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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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Contig-U11740-1
Contig ID Contig-U11740-1
Contig update 2002.12.18
Contig sequence 
>Contig-U11740-1 (Contig-U11740-1Q) /CSM_Contig/Contig-U11740-1Q.Seq.d
ATTCTGCAAGTGGAGGTGGTGGTGTTATTTTCTATAGTAGTACACCAGGT
CCAACCATAAAGAATAATGCCATTTTCTCTGGTAATACTGCTTCCTATGG
AAATAATACTGCAACCGATGCTGCTCTTATCGATGTAGAGGATCCTTTCC
CCTCAAGTTTCAGATCAGGTCAAGATACATACTCTGGTAGAATCTATATC
AAAGATGAAGAAGGTCAAATCGTATCTGGTTTTGAAGTGAAAATTTTCCT
TCAAATTTCTGGTAATACAATTGATTCCACCTCAACCTATAATGGTATTG
CCATTTTTTCAAATACAACTCTCTATGGTCCGATCAATACAACAGTTGAT
GTTGAATTCCTTAGTAATAACCCAAATTTACCAGTGAATCAAACTGTAAG
TAATGTATTGAAATGCAGTCCTGGTCAAATTCCATCCACTACAAAGATTG
AATGTACTGAATGTCGTACTGGTTCCTATGGTTACAATGGTGAAACCTGT
GTTCAATGTCCATCAATTCATGCCTATTGTCCAGGTGGTGCTAAAGTGAA
TCAATTCGAAGGTTGGTGGTATGATGTCAATCAAACTGATAAACCCTATG
TTTTNNNNNNNNN----------GAGCTCACTTCATTATCACTTCTTTTT
ATNTGTGTGTTTATCCCNATAATACAGTCTATCAATCGATTGAACAATGG
ATTGTANTCTCAAGTTCAATTATCTTCTTTTTACATGCTGTCTATATCCT
CTATTCAAACTATCGTTATCAAATCATTGATTCACTTCAACATTACCTTT
ACATCATTTCAAGAGGTAAAAAAGGTAGAAAGAATTCAAATACTACTCTC
TTTGGTTCAAACTCTTATTTCCTCTATAATCAAGATCATATCTATAATGA
TGATGATTTCTCAAGAGATAGTGGAATTTTTTCAAAAAAAGATAAAAAAC
AATCAAGAACTGATAAAATTGTAAAAAAATCAAAAATTAATAATAATAAT
GAAAATAATATTGAAAATAATAATGAAAATAATGAAAATAATGAAAATAA
TAATAATAATGTAAAAGAAATTGAAAAAATTTTAGAAGAAGAATCAAAAA
CAAATTTTGAAGAATTAAATAATAATTATTATGATGATAGTGACGATTTT
GCATGAAAGATGAAAGTAGTGNATGACNTNAGNAGATGACGAA
Gap gap included
Contig length 1183
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 5070446
End point 5069271
Strand (PLUS/MINUS) MINUS
Number of clones 2
Number of EST 3
Link to clone list U11740
List of clone(s) 

est1=CHG591F,1,604
est2=SFA262Z,605,1175
est3=CHG591Z,877,1066
Translated Amino Acid sequence 
SASGGGGVIFYSSTPGPTIKNNAIFSGNTASYGNNTATDAALIDVEDPFPSSFRSGQDTY
SGRIYIKDEEGQIVSGFEVKIFLQISGNTIDSTSTYNGIAIFSNTTLYGPINTTVDVEFL
SNNPNLPVNQTVSNVLKCSPGQIPSTTKIECTECRTGSYGYNGETCVQCPSIHAYCPGGA
KVNQFEGWWYDVNQTDKPYVXXX---

---AHFIITSFYXCVYPXNTVYQSIEQWIVXSSSIIFFLHAVYILYSNYRYQIIDSLQHY
LYIISRGKKGRKNSNTTLFGSNSYFLYNQDHIYNDDDFSRDSGIFSKKDKKQSRTDKIVK
KSKINNNNENNIENNNENNENNENNNNNVKEIEKILEEESKTNFEELNNNYYDDSDDFA*
kmkvvxdxxr*r
Translated Amino Acid sequence (All Frames) 
Frame A:
ilqvevvvlfsivvhqvqp*rimpfslvillpmeiilqpmlllsm*rilspqvsdqvkih
tlvesiskmkkvksylvlk*kfsfkflviqlippqpimvlpffqiqlsmvrsiqqlmlns
lvitqiyq*ikl*vmy*navlvkfhplqrlnvlnvvlvpmvtmvkpvfnvhqfmpivqvv
lk*inskvggmmsiklinpmfxxx---

---eltslsllfxcvfipiiqsinrlnnglxsqvqlssfymlsissiqtivikslihfni
tftsfqevkkveriqillslvqtlissiikiisimmmisqeiveffqkkiknnqelikl*
knqkliiimkiilkiimkimkimkiiiim*kklkkf*kknqkqilkn*iiiimmivtilh
er*k*xmtxxdde

Frame B:
fckwrwwcyfl**ytrsnhke*chflw*ycflwk*ycnrccsyrcrgsfplkfqirsryi
lw*nlyqr*rrsnriwf*senfpsnfw*yn*fhlnl*wychffkynslwsdqyns*c*ip
***pkftsesnck*ciemqswsnsihykd*my*msywflwlqw*nlcsmsinscllsrwc
*sesirrlvv*cqsn**tlcfxxx---

---sslhyhfflxvclsx*yslsid*tmdcxlkfnyllftcclyplfklslsnh*ftstl
plhhfkr*kr*kefkyyslwfkllfpl*srsyl****flkr*wnffkkr*ktikn**nck
kikn*****k*y*k***k**k**k****ckrn*knfrrriknkf*rik**ll****rfcm
kdessx*xxxmt

Frame C:
SASGGGGVIFYSSTPGPTIKNNAIFSGNTASYGNNTATDAALIDVEDPFPSSFRSGQDTY
SGRIYIKDEEGQIVSGFEVKIFLQISGNTIDSTSTYNGIAIFSNTTLYGPINTTVDVEFL
SNNPNLPVNQTVSNVLKCSPGQIPSTTKIECTECRTGSYGYNGETCVQCPSIHAYCPGGA
KVNQFEGWWYDVNQTDKPYVXXX---

---AHFIITSFYXCVYPXNTVYQSIEQWIVXSSSIIFFLHAVYILYSNYRYQIIDSLQHY
LYIISRGKKGRKNSNTTLFGSNSYFLYNQDHIYNDDDFSRDSGIFSKKDKKQSRTDKIVK
KSKINNNNENNIENNNENNENNENNNNNVKEIEKILEEESKTNFEELNNNYYDDSDDFA*
kmkvvxdxxr*r
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U11740-1 (Contig-U11740-1Q)
/CSM_Contig/Contig-U11740-1Q.Seq.d
         (1193 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U11740-1 (Contig-U11740-1Q) /CSM_Contig/Conti...  1197  0.0
Contig-U11018-1 (Contig-U11018-1Q) /CSM_Contig/Conti...    36  0.084
Contig-U05879-1 (Contig-U05879-1Q) /CSM_Contig/Conti...    36  0.084
Contig-U05711-1 (Contig-U05711-1Q) /CSM_Contig/Conti...    36  0.084
Contig-U13856-1 (Contig-U13856-1Q) /CSM_Contig/Conti...    34  0.33
Contig-U12706-1 (Contig-U12706-1Q) /CSM_Contig/Conti...    34  0.33
Contig-U11567-1 (Contig-U11567-1Q) /CSM_Contig/Conti...    34  0.33
Contig-U11253-1 (Contig-U11253-1Q) /CSM_Contig/Conti...    34  0.33
Contig-U05142-1 (Contig-U05142-1Q) /CSM_Contig/Conti...    34  0.33
Contig-U03849-1 (Contig-U03849-1Q) /CSM_Contig/Conti...    34  0.33

>Contig-U11740-1 (Contig-U11740-1Q) /CSM_Contig/Contig-U11740-1Q.Seq.d
          Length = 1193

 Score = 1197 bits (604), Expect = 0.0
 Identities = 604/604 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctgcaagtggaggtggtggtgttattttctatagtagtacaccaggtccaaccataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   attctgcaagtggaggtggtggtgttattttctatagtagtacaccaggtccaaccataa 60

                                                                       
Query: 61  agaataatgccattttctctggtaatactgcttcctatggaaataatactgcaaccgatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  agaataatgccattttctctggtaatactgcttcctatggaaataatactgcaaccgatg 120

                                                                       
Query: 121 ctgctcttatcgatgtagaggatcctttcccctcaagtttcagatcaggtcaagatacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctgctcttatcgatgtagaggatcctttcccctcaagtttcagatcaggtcaagatacat 180

                                                                       
Query: 181 actctggtagaatctatatcaaagatgaagaaggtcaaatcgtatctggttttgaagtga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 actctggtagaatctatatcaaagatgaagaaggtcaaatcgtatctggttttgaagtga 240

                                                                       
Query: 241 aaattttccttcaaatttctggtaatacaattgattccacctcaacctataatggtattg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaattttccttcaaatttctggtaatacaattgattccacctcaacctataatggtattg 300

                                                                       
Query: 301 ccattttttcaaatacaactctctatggtccgatcaatacaacagttgatgttgaattcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccattttttcaaatacaactctctatggtccgatcaatacaacagttgatgttgaattcc 360

                                                                       
Query: 361 ttagtaataacccaaatttaccagtgaatcaaactgtaagtaatgtattgaaatgcagtc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttagtaataacccaaatttaccagtgaatcaaactgtaagtaatgtattgaaatgcagtc 420

                                                                       
Query: 421 ctggtcaaattccatccactacaaagattgaatgtactgaatgtcgtactggttcctatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ctggtcaaattccatccactacaaagattgaatgtactgaatgtcgtactggttcctatg 480

                                                                       
Query: 481 gttacaatggtgaaacctgtgttcaatgtccatcaattcatgcctattgtccaggtggtg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gttacaatggtgaaacctgtgttcaatgtccatcaattcatgcctattgtccaggtggtg 540

                                                                       
Query: 541 ctaaagtgaatcaattcgaaggttggtggtatgatgtcaatcaaactgataaaccctatg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ctaaagtgaatcaattcgaaggttggtggtatgatgtcaatcaaactgataaaccctatg 600

               
Query: 601 tttt 604
           ||||
Sbjct: 601 tttt 604


 Score =  595 bits (300), Expect = e-170
 Identities = 309/309 (100%)
 Strand = Plus / Plus

                                                                       
Query: 624 gagctcacttcattatcacttctttttatntgtgtgtttatcccnataatacagtctatc 683
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gagctcacttcattatcacttctttttatntgtgtgtttatcccnataatacagtctatc 683

                                                                       
Query: 684 aatcgattgaacaatggattgtantctcaagttcaattatcttctttttacatgctgtct 743
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aatcgattgaacaatggattgtantctcaagttcaattatcttctttttacatgctgtct 743

                                                                       
Query: 744 atatcctctattcaaactatcgttatcaaatcattgattcacttcaacattacctttaca 803
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 atatcctctattcaaactatcgttatcaaatcattgattcacttcaacattacctttaca 803

                                                                       
Query: 804 tcatttcaagaggtaaaaaaggtagaaagaattcaaatactactctctttggttcaaact 863
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tcatttcaagaggtaaaaaaggtagaaagaattcaaatactactctctttggttcaaact 863

                                                                       
Query: 864 cttatttcctctataatcaagatcatatctataatgatgatgatttctcaagagatagtg 923
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 cttatttcctctataatcaagatcatatctataatgatgatgatttctcaagagatagtg 923

                    
Query: 924 gaatttttt 932
           |||||||||
Sbjct: 924 gaatttttt 932


 Score =  121 bits (61), Expect = 2e-27
 Identities = 73/73 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1121 aataattattatgatgatagtgacgattttgcatgaaagatgaaagtagtgnatgacntn 1180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1121 aataattattatgatgatagtgacgattttgcatgaaagatgaaagtagtgnatgacntn 1180

                         
Query: 1181 agnagatgacgaa 1193
            |||||||||||||
Sbjct: 1181 agnagatgacgaa 1193


>Contig-U11018-1 (Contig-U11018-1Q) /CSM_Contig/Contig-U11018-1Q.Seq.d
          Length = 1393

 Score = 36.2 bits (18), Expect = 0.084
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 783 cacttcaacattaccttt 800
           ||||||||||||||||||
Sbjct: 54  cacttcaacattaccttt 71


>Contig-U05879-1 (Contig-U05879-1Q) /CSM_Contig/Contig-U05879-1Q.Seq.d
          Length = 560

 Score = 36.2 bits (18), Expect = 0.084
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 1121 aataattattatgatgat 1138
            ||||||||||||||||||
Sbjct: 82   aataattattatgatgat 65


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,633
Number of Sequences: 6905
Number of extensions: 10633
Number of successful extensions: 1018
Number of sequences better than 10.0: 110
length of query: 1193
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1177
effective length of database: 5,564,391
effective search space: 6549288207
effective search space used: 6549288207
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.26
Homology vs DNA 
Query= Contig-U11740-1 (Contig-U11740-1Q) /CSM_Contig/Contig-U11740-1Q.Seq.d
         (1193 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...  1197   0.0    1
(BJ365565) Dictyostelium discoideum cDNA clone:ddc35e23, 5' ...  1197   0.0    1
(BJ398691) Dictyostelium discoideum cDNA clone:dds1k16, 3' e...   595   0.0    2
(BJ379725) Dictyostelium discoideum cDNA clone:ddc35e23, 3' ...    70   2e-07  1
(AC185993) Pan troglodytes BAC clone CH251-302B8 from chromo...    50   0.19   1
(AL512310) Human chromosome 14 DNA sequence BAC R-597A11 of ...    50   0.19   1
(AC171780) Homo sapiens chromosome 15, clone RP11-350K22, co...    50   0.19   1
(AC171558) Homo sapiens chromosome 15, clone RP11-983G14, co...    50   0.19   1
(AC135068) Homo sapiens chromosome 15, clone RP11-294C11, co...    50   0.19   1
(AC134981) Homo sapiens chromosome 15, clone RP11-361C13, co...    50   0.19   1
(AC134980) Homo sapiens chromosome 15, clone RP11-69H14, com...    50   0.19   1
(AC010760) Homo sapiens chromosome , clone RP11-2F9, complet...    50   0.19   1
(AC135617) Homo sapiens chromosome 15 clone CTD-3106G12 map ...    50   0.19   1
(AC091550) Homo sapiens chromosome 18 clone RP11-407C18 map ...    50   0.19   1
(AL445443) Human DNA sequence *** IN PROGRESS *** BAC R-415B...    50   0.19   1
(EI412358) F07_hs14-18190232_GGor_040416.f Gorilla gorilla N...    50   0.19   1
(AV298351) Mus musculus 8 days embryo cDNA, RIKEN full-lengt...    50   0.19   1
(AV241340) Mus musculus 10 days neonate skin cDNA, RIKEN ful...    50   0.19   1
(AC212693) Pongo abelii BAC clone CH276-454M15 from chromoso...    48   0.77   1
(AC212676) Pongo abelii chromosome 12 clone CH276-320G5, WOR...    48   0.77   1
(AC187170) Echinops telfairi clone CH238-90H2, complete sequ...    46   2.0    3
(BC085700) Rattus norvegicus nibrin, mRNA (cDNA clone MGC:93...    46   3.0    1
(BC055061) Mus musculus nibrin, mRNA (cDNA clone MGC:62605 I...    46   3.0    1
(BC044773) Mus musculus nibrin, mRNA (cDNA clone MGC:51369 I...    46   3.0    1
(AL807737) Mouse DNA sequence from clone RP23-386N10 on chro...    46   3.0    1
(AF218575) Rattus norvegicus Nbs1 (NBS1) mRNA, complete cds.       46   3.0    1
(AF092840) Mus musculus nibrin mRNA, complete cds.                 46   3.0    1
(AF076687) Mus musculus nibrin (Nbn) mRNA, complete cds.           46   3.0    1
(AB016988) Mus musculus mRNA for Nibrin, complete cds.             46   3.0    1
(DL001650) Methods for Molecular Toxicology Modeling.              46   3.0    1
(DJ018813) Molecular Nephrotoxicology Modeling.                    46   3.0    1
(DD040769) Molecular Toxicology Modeling.                          46   3.0    1
(AX401127) Sequence 803 from Patent WO0210453.                     46   3.0    1
(AX194616) Sequence 86 from Patent WO0151659.                      46   3.0    1
(AC092896) Homo sapiens 3 BAC RP11-274J15 (Roswell Park Canc...    46   3.0    1
(AC108261) Rattus norvegicus clone CH230-197C4, WORKING DRAF...    46   3.0    1
(AC188990) Aotus nancymaae clone CH258-364N5, WORKING DRAFT ...    46   3.0    1
(AC023645) Homo sapiens chromosome 3 clone RP11-274J15 map 3...    46   3.0    1
(BC003719) Mus musculus cDNA clone IMAGE:3485295, containing...    46   3.0    1
(AK160614) Mus musculus 11 days embryo whole body cDNA, RIKE...    46   3.0    1
(AK159790) Mus musculus osteoclast-like cell cDNA, RIKEN ful...    46   3.0    1
(AK132302) Mus musculus 15 days embryo head cDNA, RIKEN full...    46   3.0    1
(CG488805) OST24879 Mus musculus 129Sv/Ev Mus musculus cDNA ...    46   3.0    1
(CG488780) OST24834 Mus musculus 129Sv/Ev Mus musculus cDNA ...    46   3.0    1
(BZ120381) CH230-460J2.TJ CHORI-230 Segment 2 Rattus norvegi...    46   3.0    1
(DV726163) RVL18430 Wackym-Soares normalized rat vestibular ...    46   3.0    1
(DV717469) RVL7961 Wackym-Soares normalized rat vestibular c...    46   3.0    1
(AV319679) Mus musculus 13 days embryo male testis cDNA, RIK...    46   3.0    1
(AV300641) Mus musculus 8 days embryo cDNA, RIKEN full-lengt...    46   3.0    1
(AV300079) Mus musculus 8 days embryo cDNA, RIKEN full-lengt...    46   3.0    1
(AV291823) Mus musculus 6 days neonate head cDNA, RIKEN full...    46   3.0    1
(AV271912) Mus musculus adult male testis cDNA, RIKEN full-l...    46   3.0    1
(AV270519) Mus musculus adult male testis cDNA, RIKEN full-l...    46   3.0    1
(AV256682) Mus musculus adult male testis cDNA, RIKEN full-l...    46   3.0    1
(AV253797) Mus musculus adult male testis cDNA, RIKEN full-l...    46   3.0    1
(AV240392) Mus musculus 10 days neonate skin cDNA, RIKEN ful...    46   3.0    1
(AV123137) Mus musculus 11 days embryo cDNA, RIKEN full-leng...    46   3.0    1
(AV117295) Mus musculus 10-day embryo cDNA, partial sequence...    46   3.0    1
(AV021092) Mus musculus 18-day embryo cDNA, partial sequence...    46   3.0    1
(AV019166) Mus musculus 18-day embryo cDNA, partial sequence...    46   3.0    1
(CX570587) RVL1753 Wackym-Soares normalized rat vestibular c...    46   3.0    1
(CJ311870) Mus musculus 14.5 days embryo Rathke's pouches cD...    46   3.0    1
(AJ348854) Mus musculus EST, clone 032A.                           46   3.0    1
(CF173435) B0923D11-5 NIA Mouse Unfertilized Egg cDNA Librar...    46   3.0    1
(CD807306) UI-M-GW0-cio-i-09-0-UI.r1 NIH_BMAP_GW0 Mus muscul...    46   3.0    1
(CD548064) B0287B08-3 NIA Mouse Embryonic Germ Cell cDNA Lib...    46   3.0    1
(CB733060) AMGNNUC:URRG1-00122-F10-A urrg1 (14046) Rattus no...    46   3.0    1
(BY685106) Mus musculus stroma cell cDNA, RIKEN full-length ...    46   3.0    1
(AI555268) UI-R-C2p-qv-g-12-0-UI.s1 UI-R-C2p Rattus norvegic...    46   3.0    1
(AI501388) UI-R-C2p-sa-d-06-0-UI.s1 UI-R-C2p Rattus norvegic...    46   3.0    1
(AI454138) UI-R-BT0-pu-d-12-0-UI.s1 UI-R-BT0 Rattus norvegic...    46   3.0    1
(BY469786) Mus musculus melanocyte cDNA, RIKEN full-length e...    46   3.0    1
(BX518070) RZPD Mus musculus cDNA clone IMAGp952B1448 = IMAG...    46   3.0    1
(AI236498) EST233060 Normalized rat ovary, Bento Soares Ratt...    46   3.0    1
(AI137049) UI-R-C2p-oj-d-01-0-UI.s1 UI-R-C2p Rattus norvegic...    46   3.0    1
(BP489928) Rattus norvegicus mRNA, clone:RI07204, 3' end, ex...    46   3.0    1
(BM877053) ih75a06.x1 Melton Mouse E16 5 Pancreas Library 2 ...    46   3.0    1
(BM385780) UI-R-CN1-clx-p-07-0-UI.s1 UI-R-CN1 Rattus norvegi...    46   3.0    1
(BM118836) L0916H04-3 NIA Mouse Newborn Kidney cDNA Library ...    46   3.0    1
(BM068959) id71c05.x1 Melton Normalized Mixed Mouse Pancreas...    46   3.0    1
(BG665387) DRACCB12 Rat DRG Library Rattus norvegicus cDNA c...    46   3.0    1
(AA870036) vq11a05.r1 Barstead stromal cell line MPLRB8 Mus ...    46   3.0    1
(AA674908) vq57d01.r1 Barstead mouse proximal colon MPLRB6 M...    46   3.0    1
(BF469091) UI-M-BH3-ath-a-04-0-UI.r1 NIH_BMAP_M_S4 Mus muscu...    46   3.0    1
(BF466281) UI-M-CG0p-bqv-f-03-0-UI.s1 NIH_BMAP_Ret4_S2 Mus m...    46   3.0    1
(BF017992) uw96a02.x1 Soares_mammary_gland_NMLMG Mus musculu...    46   3.0    1
(BE686294) uv74b12.x1 Soares mouse 3NbMS Mus musculus cDNA c...    46   3.0    1
(BE633207) uv74b12.y1 Soares mouse 3NbMS Mus musculus cDNA c...    46   3.0    1
(BE632198) uu11d06.x1 Soares_mammary_gland_NMLMG Mus musculu...    46   3.0    1
(BE196712) SAC139 Mouse developing pituitary gland Mus muscu...    46   3.0    1
(BB812842) Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-l...    46   3.0    1
(BB811880) Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-l...    46   3.0    1
(BB787156) Mus musculus cDNA, RIKEN full-length enriched lib...    46   3.0    1
(BB690562) Mus musculus 12 days embryo female mullerian duct...    46   3.0    1
(BB672729) Mus musculus 15 days embryo head cDNA, RIKEN full...    46   3.0    1
(BB480969) Mus musculus 13 days embryo lung cDNA, RIKEN full...    46   3.0    1
(BB028930) Mus musculus 8 days embryo cDNA, RIKEN full-lengt...    46   3.0    1
(BB023569) Mus musculus adult male pituitary gland cDNA, RIK...    46   3.0    1
(AW492612) UI-M-BH3-ath-a-04-0-UI.s1 NIH_BMAP_M_S4 Mus muscu...    46   3.0    1
(CB819248) EST 240 Green Apricot Fruit Lambda Zap II Library...    36   4.6    2

>(AC116305) Dictyostelium discoideum chromosome 2 map 1005175-1418323
              strain AX4, complete sequence.
          Length = 413138

 Score = 1197 bits (604), Expect = 0.0
 Identities = 604/604 (100%)
 Strand = Plus / Plus


Query: 1      attctgcaagtggaggtggtggtgttattttctatagtagtacaccaggtccaaccataa 60
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249883 attctgcaagtggaggtggtggtgttattttctatagtagtacaccaggtccaaccataa 249942


Query: 61     agaataatgccattttctctggtaatactgcttcctatggaaataatactgcaaccgatg 120
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249943 agaataatgccattttctctggtaatactgcttcctatggaaataatactgcaaccgatg 250002


Query: 121    ctgctcttatcgatgtagaggatcctttcccctcaagtttcagatcaggtcaagatacat 180
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250003 ctgctcttatcgatgtagaggatcctttcccctcaagtttcagatcaggtcaagatacat 250062


Query: 181    actctggtagaatctatatcaaagatgaagaaggtcaaatcgtatctggttttgaagtga 240
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250063 actctggtagaatctatatcaaagatgaagaaggtcaaatcgtatctggttttgaagtga 250122


Query: 241    aaattttccttcaaatttctggtaatacaattgattccacctcaacctataatggtattg 300
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250123 aaattttccttcaaatttctggtaatacaattgattccacctcaacctataatggtattg 250182


Query: 301    ccattttttcaaatacaactctctatggtccgatcaatacaacagttgatgttgaattcc 360
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250183 ccattttttcaaatacaactctctatggtccgatcaatacaacagttgatgttgaattcc 250242


Query: 361    ttagtaataacccaaatttaccagtgaatcaaactgtaagtaatgtattgaaatgcagtc 420
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250243 ttagtaataacccaaatttaccagtgaatcaaactgtaagtaatgtattgaaatgcagtc 250302


Query: 421    ctggtcaaattccatccactacaaagattgaatgtactgaatgtcgtactggttcctatg 480
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250303 ctggtcaaattccatccactacaaagattgaatgtactgaatgtcgtactggttcctatg 250362


Query: 481    gttacaatggtgaaacctgtgttcaatgtccatcaattcatgcctattgtccaggtggtg 540
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250363 gttacaatggtgaaacctgtgttcaatgtccatcaattcatgcctattgtccaggtggtg 250422


Query: 541    ctaaagtgaatcaattcgaaggttggtggtatgatgtcaatcaaactgataaaccctatg 600
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250423 ctaaagtgaatcaattcgaaggttggtggtatgatgtcaatcaaactgataaaccctatg 250482


Query: 601    tttt 604
              ||||
Sbjct: 250483 tttt 250486

 Score =  531 bits (268), Expect(2) = e-157
 Identities = 275/278 (98%)
 Strand = Plus / Plus


Query: 656    tgtgtttatcccnataatacagtctatcaatcgattgaacaatggattgtantctcaagt 715
              |||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 251856 tgtgtttatctcgataatacagtctatcaatcgattgaacaatggattgtaatctcaagt 251915


Query: 716    tcaattatcttctttttacatgctgtctatatcctctattcaaactatcgttatcaaatc 775
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251916 tcaattatcttctttttacatgctgtctatatcctctattcaaactatcgttatcaaatc 251975


Query: 776    attgattcacttcaacattacctttacatcatttcaagaggtaaaaaaggtagaaagaat 835
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251976 attgattcacttcaacattacctttacatcatttcaagaggtaaaaaaggtagaaagaat 252035


Query: 836    tcaaatactactctctttggttcaaactcttatttcctctataatcaagatcatatctat 895
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252036 tcaaatactactctctttggttcaaactcttatttcctctataatcaagatcatatctat 252095


Query: 896    aatgatgatgatttctcaagagatagtggaattttttc 933
              ||||||||||||||||||||||||||||||||||||||
Sbjct: 252096 aatgatgatgatttctcaagagatagtggaattttttc 252133

 Score = 58.0 bits (29), Expect(2) = e-157
 Identities = 31/32 (96%)
 Strand = Plus / Plus


Query: 625    agctcacttcattatcacttctttttatntgt 656
              |||||||||||||||||||||||||||| |||
Sbjct: 251824 agctcacttcattatcacttctttttatttgt 251855

 Score = 40.1 bits (20), Expect(2) = 0.030
 Identities = 20/20 (100%)
 Strand = Plus / Plus


Query: 1132   tgatgatagtgacgattttg 1151
              ||||||||||||||||||||
Sbjct: 252332 tgatgatagtgacgattttg 252351

 Score = 30.2 bits (15), Expect(2) = 0.030
 Identities = 15/15 (100%)
 Strand = Plus / Plus


Query: 1157   aagatgaaagtagtg 1171
              |||||||||||||||
Sbjct: 252355 aagatgaaagtagtg 252369

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,030,362,849
Number of extensions: 59817587
Number of successful extensions: 4472579
Number of sequences better than 10.0: 107
Length of query: 1193
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1169
Effective length of database: 97,308,875,965
Effective search space: 113754076003085
Effective search space used: 113754076003085
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.30
Homology vs Protein 
Query= Contig-U11740-1 (Contig-U11740-1Q) /CSM_Contig/Contig-U11740-1Q.Seq.d
         (1193 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116305_85(AC116305|pid:none) Dictyostelium discoideum chromoso...   419   e-115
AF449197_1(AF449197|pid:none) Plasmodium berghei cysteine repeat...    41   0.096
AE016877_1461(AE016877|pid:none) Bacillus cereus ATCC 14579, com...    37   1.4
AF033584_1(AF033584|pid:none) Giardia intestinalis variant-speci...    37   1.4
CP000816_491(CP000816|pid:none) Ignicoccus hospitalis KIN4/I, co...    37   1.8
(P96989) RecName: Full=Outer membrane protein B; AltName: Full=r...    37   1.8
CR382138_812(CR382138|pid:none) Debaryomyces hansenii strain CBS...    36   2.4
CP001176_1519(CP001176|pid:none) Bacillus cereus B4264, complete...    36   3.1
AE014188_107(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    36   3.1
AE002161_210(AE002161|pid:none) Chlamydophila pneumoniae AR39, c...    35   4.0
EF409983_1(EF409983|pid:none) Listeria monocytogenes strain LI05...    35   4.0
BX901962_8(BX901962|pid:none) Zebrafish DNA sequence from clone ...    35   4.0
FM242711_327(FM242711|pid:none) Listeria monocytogenes Clip81459...    35   5.3
AL844506_178(AL844506|pid:none) Plasmodium falciparum 3D7 chromo...    35   6.9
FJ839693_247(FJ839693|pid:none) Enterobacteria phage RB51, compl...    35   6.9
AM884176_382(AM884176|pid:none) Chlamydia trachomatis strain L2/...    34   9.0
AP009608_642(AP009608|pid:none) Mycoplasma fermentans PG18 DNA, ...    34   9.0

>AC116305_85(AC116305|pid:none) Dictyostelium discoideum chromosome 2
            map 1005175-1418323 strain AX4, complete sequence.
          Length = 1686

 Score =  419 bits (1076), Expect = e-115
 Identities = 200/200 (100%), Positives = 200/200 (100%)
 Frame = +3

Query: 3    SASGGGGVIFYSSTPGPTIKNNAIFSGNTASYGNNTATDAALIDVEDPFPSSFRSGQDTY 182
            SASGGGGVIFYSSTPGPTIKNNAIFSGNTASYGNNTATDAALIDVEDPFPSSFRSGQDTY
Sbjct: 841  SASGGGGVIFYSSTPGPTIKNNAIFSGNTASYGNNTATDAALIDVEDPFPSSFRSGQDTY 900

Query: 183  SGRIYIKDEEGQIVSGFEVKIFLQISGNTIDSTSTYNGIAIFSNTTLYGPINTTVDVEFL 362
            SGRIYIKDEEGQIVSGFEVKIFLQISGNTIDSTSTYNGIAIFSNTTLYGPINTTVDVEFL
Sbjct: 901  SGRIYIKDEEGQIVSGFEVKIFLQISGNTIDSTSTYNGIAIFSNTTLYGPINTTVDVEFL 960

Query: 363  SNNPNLPVNQTVSNVLKCSPGQIPSTTKIECTECRTGSYGYNGETCVQCPSIHAYCPGGA 542
            SNNPNLPVNQTVSNVLKCSPGQIPSTTKIECTECRTGSYGYNGETCVQCPSIHAYCPGGA
Sbjct: 961  SNNPNLPVNQTVSNVLKCSPGQIPSTTKIECTECRTGSYGYNGETCVQCPSIHAYCPGGA 1020

Query: 543  KVNQFEGWWYDVNQTDKPYV 602
            KVNQFEGWWYDVNQTDKPYV
Sbjct: 1021 KVNQFEGWWYDVNQTDKPYV 1040

 Score =  228 bits (581), Expect(2) = 8e-59
 Identities = 118/168 (70%), Positives = 118/168 (70%)
 Frame = +2

Query: 647  FYXCVYPXNTVYQSIEQWIVXSSSIIFFLHAVYILYSNYRYQIIDSLQHYLYIISRGKKG 826
            F  CVY  NTVYQSIEQWIV SSSIIFFLHAVYILYSNYRYQIIDSLQHYLYIISRGKKG
Sbjct: 1495 FICCVYLDNTVYQSIEQWIVISSSIIFFLHAVYILYSNYRYQIIDSLQHYLYIISRGKKG 1554

Query: 827  RKNSNTTLFGSNSYFLYNQDHIYNDDDFSRDSGIFSKKDKKQSRTDXXXXXXXXXXXXXX 1006
            RKNSNTTLFGSNSYFLYNQDHIYNDDDFSRDSGIFSKKDKKQSRTD
Sbjct: 1555 RKNSNTTLFGSNSYFLYNQDHIYNDDDFSRDSGIFSKKDKKQSRTDKIVKKSKINNNNEN 1614

Query: 1007 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNFEELNNNYYDDSDDF 1150
                                           TNFEELNNNYYDDSDDF
Sbjct: 1615 NIENNNENNENNENNNNNVKEIEKILEEESKTNFEELNNNYYDDSDDF 1662

 Score = 23.9 bits (50), Expect(2) = 8e-59
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 591  KPYVXXXXXXXELTSLSLLFXC 656
            +P+        ELTSLSLLF C
Sbjct: 1476 QPFKRISDNRLELTSLSLLFIC 1497

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,589,295,686
Number of extensions: 33237208
Number of successful extensions: 87138
Number of sequences better than 10.0: 17
Number of HSP's gapped: 86504
Number of HSP's successfully gapped: 20
Length of query: 397
Length of database: 1,051,180,864
Length adjustment: 131
Effective length of query: 266
Effective length of database: 627,191,635
Effective search space: 166832974910
Effective search space used: 166832974910
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.90  gvh: 0.29  alm: 0.29  top: 0.70  tms: 0.07  mit: 0.22  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 52.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U11740-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 1
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0