NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U11731-1
Contig ID Contig-U11731-1
Contig update 2002.12.18
Contig sequence 
>Contig-U11731-1 (Contig-U11731-1Q) /CSM_Contig/Contig-U11731-1Q.Seq.d
TTACAATTTTGAAATGAGTGGTTCGATTTACAAAATTGTGGGGCTTGTTT
GTTATTTTTATTTTTATTATTAATTATTTATTTTTATTTTTATTTTTGAT
TTTGATTCTATTTTTAAGTATTTAAATAAAATAAAATCAAAAAAAAAANN
NNNNNNN----------NNNNNNNNNNATTTGATTCAAAATTAACTTTAA
TTTTAAATTCAAAGATTACTAGAGAATCATTATTTTTTGGTTTAAAATAT
TTAGAACTTTCAACATTTAATCAATCATTTGTAACTTTACCAATTCCTGA
AACTGTTGAATACTTAAAGTTACCAATGTATAACCAGCCATTAACNCCAA
AATTATTACCAAGCGGAATTAAATTTTTAATATTACCATCATTTAATCAT
CCAATTAGGGGTGAATNTATTCCNCCATCTGTAATTCACCTAGTTTTCAA
TAAACTTTTTTCAGTTATTGAATCAATACCTTCATCAGTTAAATATTTGG
ATTTGGGTGATGAATATTATGTTTATCCAGGTCATTTGTTACATTCAGTT
NTATCATTTANAAGTGGATTAAAATTTAGAGTTACAGACCCCATTCCATA
TTTTCAATCGTTAACAAATTTAAATCTTTATAATTTTAATATTGAATTAT
TAAAAAATGGTATTTCATCAAATGTAACCATCGTTAACANTTGGNTCAAA
TTTT
Gap gap included
Contig length 694
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 3189650
End point 3190325
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 2
Link to clone list U11731
List of clone(s) 

est1=CHG271F,1,148
est2=CHG271Z,149,676
Translated Amino Acid sequence 
ynfemsgsiykivglvcyfyfyy*LFIFIFIFDFDSIFKYLNKIKSKKKXXX---

---XXXFDSKLTLILNSKITRESLFFGLKYLELSTFNQSFVTLPIPETVEYLKLPMYNQP
LTPKLLPSGIKFLILPSFNHPIRGEXIPPSVIHLVFNKLFSVIESIPSSVKYLDLGDEYY
VYPGHLLHSVXSFXSGLKFRVTDPIPYFQSLTNLNLYNFNIELLKNGISSNVTIVNXWXK
F
Translated Amino Acid sequence (All Frames) 
Frame A:
lqf*newfdlqncgacllflfllliiyfyfyf*f*fyf*vfk*nkikkkxxx---

---xxxxliqn*l*f*iqrllenhyflv*ni*nfqhlinhl*lyqflkllnt*syqcits
h*xqnyyqaelnf*yyhhliiqlgvnxfxhl*ft*fsinffqllnqylhqlniwiwvmni
mfiqvicyiqxyhlxvd*nlelqtpfhifnr*qi*ifiililny*kmvfhqm*psltxgs
nf

Frame B:
ynfemsgsiykivglvcyfyfyy*LFIFIFIFDFDSIFKYLNKIKSKKKXXX---

---xxxi*fkinfnfkfkdy*riiifwfkifrtfni*siicnftns*nc*ilkvtnv*pa
inxkiitkrn*ifnitii*ssn*g*xysxicnspsfq*tffsy*intfis*ifgfg**il
clsrsfvtfsxiixkwiki*syrphsifsivnkfksl*f*y*iikkwyfikcnhr*xlxq
i

Frame C:
tilk*vvrftklwglfvififiinylflflflililflsi*ik*nqkkxxx---

---XXXFDSKLTLILNSKITRESLFFGLKYLELSTFNQSFVTLPIPETVEYLKLPMYNQP
LTPKLLPSGIKFLILPSFNHPIRGEXIPPSVIHLVFNKLFSVIESIPSSVKYLDLGDEYY
VYPGHLLHSVXSFXSGLKFRVTDPIPYFQSLTNLNLYNFNIELLKNGISSNVTIVNXWXK
F
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U11731-1 (Contig-U11731-1Q)
/CSM_Contig/Contig-U11731-1Q.Seq.d
         (704 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U11731-1 (Contig-U11731-1Q) /CSM_Contig/Conti...  1003  0.0
Contig-U11381-1 (Contig-U11381-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U11300-1 (Contig-U11300-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U04913-1 (Contig-U04913-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U02425-1 (Contig-U02425-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U09459-1 (Contig-U09459-1Q) /CSM_Contig/Conti...    38  0.012
Contig-U08834-1 (Contig-U08834-1Q) /CSM_Contig/Conti...    38  0.012
Contig-U04737-1 (Contig-U04737-1Q) /CSM_Contig/Conti...    38  0.012
Contig-U11930-1 (Contig-U11930-1Q) /CSM_Contig/Conti...    36  0.049

>Contig-U11731-1 (Contig-U11731-1Q) /CSM_Contig/Contig-U11731-1Q.Seq.d
          Length = 704

 Score = 1003 bits (506), Expect = 0.0
 Identities = 527/527 (100%)
 Strand = Plus / Plus

                                                                       
Query: 178 atttgattcaaaattaactttaattttaaattcaaagattactagagaatcattattttt 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 atttgattcaaaattaactttaattttaaattcaaagattactagagaatcattattttt 237

                                                                       
Query: 238 tggtttaaaatatttagaactttcaacatttaatcaatcatttgtaactttaccaattcc 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tggtttaaaatatttagaactttcaacatttaatcaatcatttgtaactttaccaattcc 297

                                                                       
Query: 298 tgaaactgttgaatacttaaagttaccaatgtataaccagccattaacnccaaaattatt 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tgaaactgttgaatacttaaagttaccaatgtataaccagccattaacnccaaaattatt 357

                                                                       
Query: 358 accaagcggaattaaatttttaatattaccatcatttaatcatccaattaggggtgaatn 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 accaagcggaattaaatttttaatattaccatcatttaatcatccaattaggggtgaatn 417

                                                                       
Query: 418 tattccnccatctgtaattcacctagttttcaataaacttttttcagttattgaatcaat 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tattccnccatctgtaattcacctagttttcaataaacttttttcagttattgaatcaat 477

                                                                       
Query: 478 accttcatcagttaaatatttggatttgggtgatgaatattatgtttatccaggtcattt 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 accttcatcagttaaatatttggatttgggtgatgaatattatgtttatccaggtcattt 537

                                                                       
Query: 538 gttacattcagttntatcatttanaagtggattaaaatttagagttacagaccccattcc 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gttacattcagttntatcatttanaagtggattaaaatttagagttacagaccccattcc 597

                                                                       
Query: 598 atattttcaatcgttaacaaatttaaatctttataattttaatattgaattattaaaaaa 657
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 atattttcaatcgttaacaaatttaaatctttataattttaatattgaattattaaaaaa 657

                                                          
Query: 658 tggtatttcatcaaatgtaaccatcgttaacanttggntcaaatttt 704
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 tggtatttcatcaaatgtaaccatcgttaacanttggntcaaatttt 704


 Score =  101 bits (51), Expect = 1e-21
 Identities = 51/51 (100%)
 Strand = Plus / Plus

                                                             
Query: 1  ttacaattttgaaatgagtggttcgatttacaaaattgtggggcttgtttg 51
          |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ttacaattttgaaatgagtggttcgatttacaaaattgtggggcttgtttg 51


>Contig-U11381-1 (Contig-U11381-1Q) /CSM_Contig/Contig-U11381-1Q.Seq.d
          Length = 1270

 Score = 40.1 bits (20), Expect = 0.003
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 484 atcagttaaatatttggatttgggtgatgaat 515
           ||||||||||||||| ||||| ||| ||||||
Sbjct: 836 atcagttaaatatttagatttaggtaatgaat 867


>Contig-U11300-1 (Contig-U11300-1Q) /CSM_Contig/Contig-U11300-1Q.Seq.d
          Length = 2060

 Score = 40.1 bits (20), Expect = 0.003
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 233  ttttttggtttaaaatatttagaa 256
            ||||||||| ||||||||||||||
Sbjct: 1100 ttttttggtataaaatatttagaa 1123


 Score = 30.2 bits (15), Expect = 3.0
 Identities = 24/27 (88%)
 Strand = Plus / Plus

                                       
Query: 376  tttaatattaccatcatttaatcatcc 402
            ||||||||||| |||||| || |||||
Sbjct: 1181 tttaatattacaatcattcaaccatcc 1207


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,618
Number of Sequences: 6905
Number of extensions: 16618
Number of successful extensions: 2764
Number of sequences better than 10.0: 232
length of query: 704
length of database: 5,674,871
effective HSP length: 16
effective length of query: 688
effective length of database: 5,564,391
effective search space: 3828301008
effective search space used: 3828301008
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.26
Homology vs DNA 
Query= Contig-U11731-1 (Contig-U11731-1Q) /CSM_Contig/Contig-U11731-1Q.Seq.d
         (704 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC115684) Dictyostelium discoideum chromosome 2 map 3108975...   948   0.0    3
(BJ379377) Dictyostelium discoideum cDNA clone:ddc34m18, 3' ...  1003   0.0    1
(BJ365251) Dictyostelium discoideum cDNA clone:ddc34m18, 5' ...   101   3e-17  1
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-...    40   1e-04  8
(AC128568) Rattus norvegicus clone CH230-329D18, WORKING DRA...    54   0.007  1
(AY534144) Saprolegnia ferax strain ATCC 36051 mitochondion,...    40   0.012  7
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    42   0.017  11
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    36   0.020  11
(EB595674) AGENCOURT_51779356 D. ananassae EST Drosophila an...    34   0.024  3
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp...    34   0.025  15
(ED716531) GM_WBb0066G09.f GM_WBb Glycine max genomic clone ...    52   0.029  1
(CZ523852) GMW2-66G9a.b2 GMW2 Glycine max genomic, genomic s...    52   0.029  1
(CZ508362) GMW2-66G9a.b1 GMW2 Glycine max genomic, genomic s...    52   0.029  1
(FG233107) pvrebac010002_C23_M1321_phred13_vc root hairs of ...    52   0.029  1
(AC115604) Dictyostelium discoideum chromosome 2 map 4354771...    32   0.054  8
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701...    34   0.054  8
(L77117) Methanocaldococcus jannaschii DSM 2661, complete ge...    38   0.13   17
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    34   0.17   11
(EU494508) Drosophila hystricosa voucher 109444 16S ribosoma...    34   0.20   3
(EK402822) 1095469550115 Global-Ocean-Sampling_GS-31-01-01-1...    44   0.22   2
(AE017263) Mesoplasma florum L1 complete genome.                   32   0.23   17
(AJ012289) Plasmodium falciparum gene for IRP-like protein (...    44   0.25   2
(AY301620) Bombyx mandarina from China mitochondrial DNA, co...    34   0.29   6
(AX344573) Sequence 24 from Patent WO0200932.                      36   0.31   8
(AB070263) Bombyx mandarina mitochondrial DNA, complete genome.    34   0.31   6
(ET976203) CHO_OF687xc09r1.ab1 CHO_OF Nicotiana tabacum geno...    42   0.33   2
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    32   0.33   10
(CE815354) tigr-gss-dog-17000318375555 Dog Library Canis lup...    38   0.33   2
(AM437289) Vitis vinifera contig VV78X017796.15, whole genom...    36   0.36   3
(AB284544) Polistes variabilis gene for 16S rRNA, partial se...    36   0.37   3
(AB284545) Polistes humilis gene for 16S rRNA, partial seque...    36   0.37   3
(DQ471413) Trupanea conjuncta 16S ribosomal RNA gene, partia...    44   0.43   2
(AL808142) Mouse DNA sequence from clone RP23-84B8 on chromo...    48   0.45   1
(AL773587) Mouse DNA sequence from clone RP23-38J2 on chromo...    48   0.45   1
(AL133400) Mouse DNA sequence from clone RP21-598F11 on chro...    48   0.45   1
(AC158494) Capitella capitata clone JGIAUTO-1A7, complete se...    48   0.45   1
(CU694949) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.45   1
(CT855439) Oryza sativa Indica Group EST sequence:OSIGCPI012...    48   0.45   1
(AE010300) Leptospira interrogans serovar lai str. 56601 chr...    40   0.49   20
(AL132860) Caenorhabditis elegans YAC Y56A3A.                      36   0.52   7
(DX558685) GH_MBb0051N11r GH_MBb Gossypium hirsutum genomic ...    34   0.73   3
(AC218368) Bos taurus clone CH240-285J11, WORKING DRAFT SEQU...    44   0.81   2
(BJ353425) Dictyostelium discoideum cDNA clone:dda50j06, 3' ...    40   0.89   2
(BU894273) X005E06 Populus wood cDNA library Populus tremula...    36   0.96   3
(CP000743) Methanococcus aeolicus Nankai-3, complete genome.       34   1.1    17
(AB083339) Bombyx mori mitochondrial DNA, complete genome, s...    34   1.1    5
(AF149768) Bombyx mori mitochondrion, complete genome.             34   1.2    5
(AB070264) Bombyx mori mitochondrial DNA, complete genome, s...    34   1.2    5
(ED814653) ML__Ba0095A08f ML__Ba Mimulus lewisii genomic, ge...    34   1.2    2
(DU699876) Bst032403 lambda03 Boechera stricta genomic clone...    34   1.2    2
(DU697288) Bst029818 lambda03 Boechera stricta genomic clone...    34   1.2    2
(DU695608) Bst028138 lambda03 Boechera stricta genomic clone...    34   1.2    2
(DU681617) Bst014153 lambda03 Boechera stricta genomic clone...    34   1.2    2
(CJ457532) Macaca fascicularis mRNA, clone: QflA-23420, 5' e...    36   1.2    2
(EJ192739) 1092344212565 Global-Ocean-Sampling_GS-27-01-01-1...    36   1.2    2
(EU215224) Metanoea flavipennis voucher MF001 16S ribosomal ...    36   1.3    2
(EU215207) Drusus nigrescens voucher DNig005 16S ribosomal R...    36   1.3    2
(EU215202) Drusus monticola voucher DMon005 16S ribosomal RN...    36   1.3    2
(EU215201) Drusus monticola voucher DMon001 16S ribosomal RN...    36   1.3    2
(EU215180) Drusus alpinus voucher DAlp003 16S ribosomal RNA ...    36   1.3    2
(EU215177) Cryptothrix nebulicola voucher CN006 16S ribosoma...    36   1.3    2
(EU215179) Drusus alpinus voucher DAlp002 16S ribosomal RNA ...    36   1.3    2
(EU215174) Anomalopterygella chauviniana voucher AC001 16S r...    36   1.3    2
(EU215206) Drusus nigrescens voucher DNig001 16S ribosomal R...    36   1.3    2
(EU215199) Drusus melanchaetes voucher DMel001 16S ribosomal...    36   1.3    2
(EU215211) Drusus rectus voucher DRec005 16S ribosomal RNA g...    36   1.3    2
(EJ027076) 1095454029615 Global-Ocean-Sampling_GS-26-01-01-1...    32   1.3    3
(AC009979) Homo sapiens 12 BAC RP11-324M3 (Roswell Park Canc...    32   1.3    5
(CP000049) Borrelia turicatae 91E135, complete genome.             44   1.4    10
(AC144342) Medicago truncatula clone mth2-10n2, complete seq...    38   1.4    5
(AC129410) Rattus norvegicus clone CH230-344P5, WORKING DRAF...    40   1.5    3
(AM462825) Vitis vinifera contig VV78X214960.7, whole genome...    36   1.5    4
(AC119905) Mus musculus chromosome 17, clone RP24-238N14, co...    46   1.8    1
(AM479119) Vitis vinifera contig VV78X208416.4, whole genome...    46   1.8    1
(AC006223) Arabidopsis thaliana chromosome 2 clone F22D22 ma...    46   1.8    1
(BD093448) Sucrose binding proteins.                               46   1.8    1
(AC125568) Rattus norvegicus clone CH230-9I9, *** SEQUENCING...    46   1.8    1
(AC107437) Rattus norvegicus clone CH230-84A6, *** SEQUENCIN...    46   1.8    1
(AC094484) Rattus norvegicus clone CH230-4B15, WORKING DRAFT...    46   1.8    1
(CU463189) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.8    1
(AC189403) Brassica rapa subsp. pekinensis clone KBrB058B22,...    46   1.8    1
(EK420536) 1095515502848 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.8    1
(EK398070) 1095469528330 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.8    1
(EK353754) 1095468298419 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.8    1
(EK340585) 1095467060102 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.8    1
(EK259384) 1095462097709 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.8    1
(EK056410) 1092960027056 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.8    1
(EK008290) 1092955128644 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.8    1
(AL949434) Arabidopsis thaliana T-DNA flanking sequence GK-3...    46   1.8    1
(DX906826) KBrH041N05R KBrH, Brassica rapa HindIII BAC libra...    46   1.8    1
(CZ960553) 306237 Tomato EcoRI BAC Library Solanum lycopersi...    46   1.8    1
(CZ949198) 261858 Tomato EcoRI BAC Library Solanum lycopersi...    46   1.8    1
(CZ114675) OM__Ba0157F01.f OM__Ba Oryza minuta genomic clone...    46   1.8    1
(CW562269) OA_ABa0085F19.r OA_ABa Oryza australiensis genomi...    46   1.8    1
(CL563417) OB__Ba0025I14.f OB__Ba Oryza brachyantha genomic ...    46   1.8    1
(CL509152) SAIL_80_B08.v1 SAIL Collection Arabidopsis thalia...    46   1.8    1
(CC144163) NDL.28D11.SP6 Notre Dame Liverpool Aedes aegypti ...    46   1.8    1
(DV787900) Hw_liver_33_050725_E08 Bos taurus CF-24-HW liver ...    46   1.8    1
(CU557916) Spc_16YG08 cDNA clone of Developmental Stages Lib...    46   1.8    1
(CD322301) StrPu537.000663 Sea urchin embryo 20hr blastula s...    46   1.8    1

>(AC115684) Dictyostelium discoideum chromosome 2 map 3108975-3191114
             strain AX4, complete sequence.
          Length = 82139

 Score =  948 bits (478), Expect(3) = 0.0
 Identities = 494/501 (98%)
 Strand = Plus / Minus


Query: 178   atttgattcaaaattaactttaattttaaattcaaagattactagagaatcattattttt 237
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14199 atttgattcaaaattaactttaattttaaattcaaagattactagagaatcattattttt 14140


Query: 238   tggtttaaaatatttagaactttcaacatttaatcaatcatttgtaactttaccaattcc 297
             |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 14139 tggtttaaaatatttagaactttcaacatttaatcaatcatttgaaactttaccaattcc 14080


Query: 298   tgaaactgttgaatacttaaagttaccaatgtataaccagccattaacnccaaaattatt 357
             |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 14079 tgaaactgttgaatacttaaagttaccaatgtataaccagccattaacaccaaaattatt 14020


Query: 358   accaagcggaattaaatttttaatattaccatcatttaatcatccaattaggggtgaatn 417
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14019 accaagcggaattaaatttttaatattaccatcatttaatcatccaattaggggtgaatc 13960


Query: 418   tattccnccatctgtaattcacctagttttcaataaacttttttcagttattgaatcaat 477
             |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13959 tattccaccatctgtaattcacctagttttcaataaacttttttcagttattgaatcaat 13900


Query: 478   accttcatcagttaaatatttggatttgggtgatgaatattatgtttatccaggtcattt 537
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13899 accttcatcagttaaatatttggatttgggtgatgaatattatgtttatccaggtcattt 13840


Query: 538   gttacattcagttntatcatttanaagtggattaaaatttagagttacagaccccattcc 597
             ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 13839 gttacattcagttctatcatttagaagtggattaaaatttagagttacagaccccattcc 13780


Query: 598   atattttcaatcgttaacaaatttaaatctttataattttaatattgaattattaaaaaa 657
             ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13779 atattctcaatcgttaacaaatttaaatctttataattttaatattgaattattaaaaaa 13720


Query: 658   tggtatttcatcaaatgtaac 678
             |||||||||||||||||||||
Sbjct: 13719 tggtatttcatcaaatgtaac 13699

 Score =  101 bits (51), Expect(3) = 0.0
 Identities = 51/51 (100%)
 Strand = Plus / Minus


Query: 1     ttacaattttgaaatgagtggttcgatttacaaaattgtggggcttgtttg 51
             |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16093 ttacaattttgaaatgagtggttcgatttacaaaattgtggggcttgtttg 16043

 Score = 40.1 bits (20), Expect(3) = 0.0
 Identities = 24/26 (92%)
 Strand = Plus / Minus


Query: 679   catcgttaacanttggntcaaatttt 704
             ||||||||||| |||| |||||||||
Sbjct: 13699 catcgttaacacttggttcaaatttt 13674

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 785,028,888
Number of extensions: 52386027
Number of successful extensions: 4537766
Number of sequences better than 10.0: 248
Length of query: 704
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 680
Effective length of database: 97,308,875,965
Effective search space: 66170035656200
Effective search space used: 66170035656200
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.30
Homology vs Protein 
Query= Contig-U11731-1 (Contig-U11731-1Q) /CSM_Contig/Contig-U11731-1Q.Seq.d
         (704 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115684_4(AC115684|pid:none) Dictyostelium discoideum chromosom...   323   2e-87
AC115598_30(AC115598|pid:none) Dictyostelium discoideum chromoso...   111   2e-23
(Q5UP38) RecName: Full=Putative FNIP repeat-containing protein L...    59   1e-07
(Q5UPD4) RecName: Full=Putative F-box and FNIP repeat-containing...    51   3e-05
(Q554M9) RecName: Full=FNIP repeat-containing protein DDB_G02746...    49   1e-04
AC116956_26(AC116956|pid:none) Dictyostelium discoideum chromoso...    49   1e-04
AC116960_62(AC116960|pid:none) Dictyostelium discoideum chromoso...    49   1e-04
AC117176_63(AC117176|pid:none) Dictyostelium discoideum chromoso...    46   0.001
AC116957_13(AC116957|pid:none) Dictyostelium discoideum chromoso...    45   0.003
AC117075_45(AC117075|pid:none) Dictyostelium discoideum chromoso...    45   0.003
AC116305_136(AC116305|pid:none) Dictyostelium discoideum chromos...    44   0.004
(Q94481) RecName: Full=FNIP repeat-containing protein cigB;            44   0.006
U66528_1(U66528|pid:none) Dictyostelium discoideum CigB (cigB) m...    44   0.006
AC115604_12(AC115604|pid:none) Dictyostelium discoideum chromoso...    43   0.008
(Q8T126) RecName: Full=Probable inactive serine/threonine-protei...    43   0.008
(Q54FS1) RecName: Full=FNIP repeat-containing protein DDB_G02906...    43   0.011
AC116982_8(AC116982|pid:none) Dictyostelium discoideum chromosom...    42   0.018
AC116957_83(AC116957|pid:none) Dictyostelium discoideum chromoso...    42   0.024
AC116984_124(AC116984|pid:none) Dictyostelium discoideum chromos...    41   0.031
AC114265_1(AC114265|pid:none) Dictyostelium discoideum chromosom...    41   0.031
(Q54FS2) RecName: Full=FNIP repeat-containing protein DDB_G02906...    40   0.069
(Q5UQL2) RecName: Full=Putative F-box and FNIP repeat-containing...    40   0.069
AC116305_99(AC116305|pid:none) Dictyostelium discoideum chromoso...    40   0.090
AC117076_9(AC117076|pid:none) Dictyostelium discoideum chromosom...    39   0.12
AC116957_4(AC116957|pid:none) Dictyostelium discoideum chromosom...    39   0.12
AC115612_2(AC115612|pid:none) Dictyostelium discoideum chromosom...    39   0.15
(Q1ZXK1) RecName: Full=FNIP repeat-containing protein DDB_G02773...    39   0.15
(Q54JC0) RecName: Full=Calmodulin-binding protein CmbB; AltName:...    39   0.15
AC116977_30(AC116977|pid:none) Dictyostelium discoideum chromoso...    39   0.20
AC116984_17(AC116984|pid:none) Dictyostelium discoideum chromoso...    38   0.26
AC116984_74(AC116984|pid:none) Dictyostelium discoideum chromoso...    38   0.34
(Q5UR85) RecName: Full=Putative FNIP repeat-containing protein R...    38   0.34
AC116984_119(AC116984|pid:none) Dictyostelium discoideum chromos...    37   0.76
CP001127_883(CP001127|pid:none) Salmonella enterica subsp. enter...    37   0.76
CP000049_162(CP000049|pid:none) Borrelia turicatae 91E135, compl...    36   1.00
CR940347_12(CR940347|pid:none) Theileria annulata strain Ankara ...    36   1.00
CP001138_776(CP001138|pid:none) Salmonella enterica subsp. enter...    36   1.3
AC116987_15(AC116987|pid:none) Dictyostelium discoideum chromoso...    35   2.9
(Q86AH2) RecName: Full=FNIP repeat-containing protein DDB_G02719...    35   2.9
AC116032_2(AC116032|pid:none) Dictyostelium discoideum chromosom...    34   3.8
AC117081_26(AC117081|pid:none) Dictyostelium discoideum chromoso...    33   6.5
AC117267_6(AC117267|pid:none) Dictyostelium discoideum chromosom...    33   8.4

>AC115684_4(AC115684|pid:none) Dictyostelium discoideum chromosome 2
            map 3108975-3191114 strain AX4, complete sequence.
          Length = 723

 Score =  323 bits (829), Expect = 2e-87
 Identities = 163/175 (93%), Positives = 164/175 (93%)
 Frame = +2

Query: 179  FDSKLTLILNSKITRESLFFGLKYLELSTFNQSFVTLPIPETVEYLKLPMYNQPLTPKLL 358
            FDSKLTLILNSKITRESLFFGLKYLELSTFNQSF TLPIPETVEYLKLPMYNQPLTPKLL
Sbjct: 495  FDSKLTLILNSKITRESLFFGLKYLELSTFNQSFETLPIPETVEYLKLPMYNQPLTPKLL 554

Query: 359  PSGIKFLILPSFNHPIRGEXIPPSVIHLVFNKLFSVIESIPSSVKYLDLGDEYYVYPGHL 538
            PSGIKFLILPSFNHPIRGE IPPSVIHLVFNKLFSVIESIPSSVKYLDLGDEYYVYPGHL
Sbjct: 555  PSGIKFLILPSFNHPIRGESIPPSVIHLVFNKLFSVIESIPSSVKYLDLGDEYYVYPGHL 614

Query: 539  LHSVXSFXSGLKFRVTDPIPYFQSLTNLNLYNFNIELLKNGISSNVTIVNXWXKF 703
            LHSV SF SGLKFRVTDPIPY QSLTNLNLYNFNIELLKNGISSNVT +     F
Sbjct: 615  LHSVLSFRSGLKFRVTDPIPYSQSLTNLNLYNFNIELLKNGISSNVTSLTLGSNF 669

 Score = 61.6 bits (148), Expect = 2e-08
 Identities = 50/173 (28%), Positives = 89/173 (51%), Gaps = 11/173 (6%)
 Frame = +2

Query: 182 DSKLTLILNSKITRESLFFGLKYLELSTFNQSFVTLPIPETVEYLKLPMYNQPLTPKLLP 361
           D  +  + N  I +++  +G+ YL LS+F++      IPE++  L+L  +NQ + P ++P
Sbjct: 294 DGLILPLFNQPICKKTFTYGVYYLSLSSFHRQLNVGVIPESIHTLELASFNQTILPGVIP 353

Query: 362 SGIKFLILPSFNHPIRGEXIPPSVIHLV---FNKLFSVIESIPSSVKYLDLGD-----EY 517
           + ++ L LPS+N  +    IP  V  L+   FN+  +  + IP +V  L L       E+
Sbjct: 354 TSVRTLKLPSYNKTLTQGSIPKGVRTLLLSSFNQPLTT-DIIPKTVTILKLQSFNQPIEW 412

Query: 518 YVYPGHLLH-SVXSFXSGLKFRVTDPIPYFQSLTNLNLYN--FNIELLKNGIS 667
              P  L+  S+ S+   L++ V   IPY+ S   L L +  F+   + +G+S
Sbjct: 413 GALPCSLVELSLASYKQPLQWGV---IPYYISTLELPLASAPFSEGSIPSGVS 462

 Score = 38.9 bits (89), Expect = 0.15
 Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 3/108 (2%)
 Frame = +2

Query: 191 LTLILNSKITRESLFFGLKYLEL-STFNQSFVTLPIPETVEYLKLPMYNQPLTPKLLPSG 367
           LT I+++KIT        KY  L    N   + + I    + L LP++NQP+  K    G
Sbjct: 258 LTDIISNKITTSLP----KYSTLIGEPNDGLIYIGIQNNSDGLILPLFNQPICKKTFTYG 313

Query: 368 IKFLILPSFNHPIRGEXIPPSVIHLVFNKLFSVI--ESIPSSVKYLDL 505
           + +L L SF+  +    IP S+  L        I    IP+SV+ L L
Sbjct: 314 VYYLSLSSFHRQLNVGVIPESIHTLELASFNQTILPGVIPTSVRTLKL 361

 Score = 38.5 bits (88), Expect = 0.20
 Identities = 32/101 (31%), Positives = 43/101 (42%), Gaps = 21/101 (20%)
 Frame = +2

Query: 206 NSKITRESLFFGLKYLELSTFNQSFVTLPIPETVEYLKLPM------------------- 328
           N  +T+ S+  G++ L LS+FNQ   T  IP+TV  LKL
Sbjct: 365 NKTLTQGSIPKGVRTLLLSSFNQPLTTDIIPKTVTILKLQSFNQPIEWGALPCSLVELSL 424

Query: 329 --YNQPLTPKLLPSGIKFLILPSFNHPIRGEXIPPSVIHLV 445
             Y QPL   ++P  I  L LP  + P     IP  V  L+
Sbjct: 425 ASYKQPLQWGVIPYYISTLELPLASAPFSEGSIPSGVSKLI 465

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 854,629,252
Number of extensions: 18039739
Number of successful extensions: 80924
Number of sequences better than 10.0: 42
Number of HSP's gapped: 80821
Number of HSP's successfully gapped: 101
Length of query: 234
Length of database: 1,051,180,864
Length adjustment: 125
Effective length of query: 109
Effective length of database: 646,610,989
Effective search space: 70480597801
Effective search space used: 70480597801
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.75  gvh: 0.36  alm: 0.33  top: 0.53  tms: 0.00  mit: 0.14  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for Contig-U11731-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0