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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U11717-1
Contig ID Contig-U11717-1
Contig update 2002.12.18
Contig sequence 
>Contig-U11717-1 (Contig-U11717-1Q) /CSM_Contig/Contig-U11717-1Q.Seq.d
AAAATTGTGTTTTAAAGTTCATTGTTTACATTCTTTAAAAAGAATAAAAA
CATACACACAATATCTCTAATAGAGATAACAACAAAATATGTTAACTATT
AAAAGATTACTTTTAAATCAAAACCTATTTAAAAGTAGTTGTAATTCCAC
AGGTATCATTTCAATTAATTACAATAGTAATAATAAAATTTGTTTTTTCA
GTTCTTCTTCAACATTAATAAATAAAACTAATGAAATTTTAGATATTGAA
GATAATAATAATAATAATAATGAAATATCATCATCACCATTATTTTTAAA
AGAAACAATTAAAGAATTTAAATTAAAAAAAGAATTTATTGAAAAGTATT
CAAAAAAGAAAGCACCATTTGGATTTGGAGTATTGGGTGAGATTGTATAT
AGAAGAAGTTATTCGAGAGTTAAAGAGGATAATACAAATGAACAATGGTT
TGAAACCGTTGAGAGAGTTGTAAATGGTACATATAATATTCAAAGGAAAT
GGATAGAAAGACATGGTTTAGAATGGAATCAAAATAAAGCTCAAAAATCT
GCACAAGAAATGTATAATCGTATATTTGAAATGAAGTTTTTACCACCTGG
TAGAGGTTTATATTCTTGTGGTTCTTCAACCTACTGAATCAAAA------
----CCATGAGTGGTATAGCACAGTTCATTCATTTCAATGGGGTGCATCA
ACTTAAGGATTGGTGTGTCAATGGTTTCAAGCTTTTGAATGAATTGGATG
AGAAGTATTCCGAGTGGTTGGCAATACCGAAATCAATAAAGAGAACATCG
ATTAAACCAAGTGGCACTGTGTCGTTGTTGGCTGGTGCCACACCTGGCAT
GCATTATCCGATATCTGAATATTACATTAGACGTATAAGAATTCAAAAAG
AGAGTAACCTAATTCCACCATTGGTAGAAGCCGGCTACCATGTTGAGCCA
GCCTTTGAGAATAGTACCAATGTTGTAGTTGAAATACCCATTCATTCAGG
TAAAGGTATTAGATCTGCAAATTCAATAACAATGTGGGAACAATTATCAT
TAGCTTCTTTTCTTCAAAAATATTGGGCTGATAATCAAGTGAGTTGTACA
GTCTCTTTTGATCCAATTAAAGAGGGTCCACAATTAAAACATGCCTTAGA
TTACTTTCAATATCAATTAAAAGGTGTATCATTTTTACCAAATTCTTCAA
CAACTACATCTGTTTATAAACAAATGCCTTATGAAGAAATTGATGAAACT
CGTTACAACCAAATCATTGCTAACCTAAAACCTGTTGATTTTCAAAAGTT
AAATAATTCCCCTTTAGAGCCTACTCCTGATAAATTTTGTGATTCTTCAA
GTTGTACAATTGTTTCTGATAATTCTGAAACACTTAATAATTTATAATAA
TAATAATAATAATAATAATAATAATAATAATAATAAAAATAAAAATAAAA
AACTCGATAATTTCCAAAAATTATTATAATATTAGATGGAATAATAGCGA
TTCTTATTTTGGTAATTTACATCATCAATTTTTTTAATTTTAAGAATTTA
TTTNTTTATCTTAAATAAATTTTAACTTTT
Gap gap included
Contig length 1570
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 1882306
End point 1883881
Strand (PLUS/MINUS) PLUS
Number of clones 8
Number of EST 14
Link to clone list U11717
List of clone(s) 

est1=CHF508F,1,401
est2=CHM177F,5,602
est3=VHJ714F,21,642
est4=VHP794F,21,644
est5=VHG104F,24,590
est6=VHN652F,98,390
est7=VHJ714Z,645,1465
est8=VHP794Z,645,1393
est9=SLE118F,660,921
est10=VHN652Z,749,1377
est11=CHM177Z,760,1475
est12=CHF508Z,780,1463
est13=CHM308Z,824,1572
est14=VHG104Z,858,1464
Translated Amino Acid sequence 
ncvlkfivyil*ke*khthnisnrdnnkic*llkdyf*iktylkvvvipqvsfqlitivi
ikfvfsvllqh**iklmkf*ilkiiiiiimkyhhhhyf*kkqlknln*kknllksiqkrk
hhldleywvrlyieevirelkriiqmnnglkplrel*mvhiifkgng*kdmv*ngikikl
knlhkkciivylk*SFYHLVEVYILVVLQPTESK---

---MSGIAQFIHFNGVHQLKDWCVNGFKLLNELDEKYSEWLAIPKSIKRTSIKPSGTVSL
LAGATPGMHYPISEYYIRRIRIQKESNLIPPLVEAGYHVEPAFENSTNVVVEIPIHSGKG
IRSANSITMWEQLSLASFLQKYWADNQVSCTVSFDPIKEGPQLKHALDYFQYQLKGVSFL
PNSSTTTSVYKQMPYEEIDETRYNQIIANLKPVDFQKLNNSPLEPTPDKFCDSSSCTIVS
DNSETLNNL**************k*k*ktr*fpkiiiildgiiaililviyiinffnfkn
lfxylk*iltf
Translated Amino Acid sequence (All Frames) 
Frame A:
kivf*sslftffkknknihtislieittkyvny*kitfkskpi*k*l*fhryhfn*lq**
**nlffqfffnink*n**nfry*r*******niiitiifkrnn*ri*ikkriy*kvfkke
stiwiwsig*dci*kklfes*rg*yk*tmv*nr*esckwyi*yskemdrktwfrmesk*s
skictrnv*syi*nevfttw*rfiflwffnllnq---

---p*vv*hssfismgcinlrigvsmvssf*mnwmrsipsgwqyrnq*rehrlnqvalcr
cwlvphlaciirylnitldv*efkkrvt*fhhw*kpatmlsqplrivpml*lkypfiqvk
vldlqiq*qcgnnyh*llffknigliik*vvqslliqlkrvhn*nmp*itfnin*kvyhf
yqilqqlhlfinkclmkklmklvttksllt*nllifks*iipl*slllinfvilqvvqlf
liilkhliiynnnnnnnnnnnnnknknkkldnfqkll*y*me**rflfw*ftssiflilr
iyxfilnkf*l

Frame B:
klcfkvhclhslkriktytqyl**r*qqnmltikrlllnqnlfksscnstgiisinynsn
nkicffsssstlinktneildiednnnnnneisssplflketikefklkkefiekyskkk
apfgfgvlgeivyrrsysrvkedntneqwfetvervvngtyniqrkwierhglewnqnka
qksaqemynrifemkflppgrglyscgssty*ik---

---hewystvhsfqwgast*glvcqwfqafe*ig*evfrvvgnteinkenid*tkwhcvv
vgwchtwhalsdi*ilh*tyknskre*pnstigrsrlpc*asl*e*yqccs*nthsfr*r
y*ickfnnnvgtiiisffsskilg**sselyslf*sn*rgstiktclrllsisikrciif
tkffnnyicl*tnal*rn**nslqpnhc*pktc*fskvk*fpfrays**il*ffklyncf
**f*nt**fiiiiiiiiiiiiiikikiknsiisknyynirwnnsdsyfgnlhhqff*f*e
fixls*infnf

Frame C:
ncvlkfivyil*ke*khthnisnrdnnkic*llkdyf*iktylkvvvipqvsfqlitivi
ikfvfsvllqh**iklmkf*ilkiiiiiimkyhhhhyf*kkqlknln*kknllksiqkrk
hhldleywvrlyieevirelkriiqmnnglkplrel*mvhiifkgng*kdmv*ngikikl
knlhkkciivylk*SFYHLVEVYILVVLQPTESK---

---MSGIAQFIHFNGVHQLKDWCVNGFKLLNELDEKYSEWLAIPKSIKRTSIKPSGTVSL
LAGATPGMHYPISEYYIRRIRIQKESNLIPPLVEAGYHVEPAFENSTNVVVEIPIHSGKG
IRSANSITMWEQLSLASFLQKYWADNQVSCTVSFDPIKEGPQLKHALDYFQYQLKGVSFL
PNSSTTTSVYKQMPYEEIDETRYNQIIANLKPVDFQKLNNSPLEPTPDKFCDSSSCTIVS
DNSETLNNL**************k*k*ktr*fpkiiiildgiiaililviyiinffnfkn
lfxylk*iltf
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U11717-1 (Contig-U11717-1Q)
/CSM_Contig/Contig-U11717-1Q.Seq.d
         (1580 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U11717-1 (Contig-U11717-1Q) /CSM_Contig/Conti...  2028  0.0
Contig-U10660-1 (Contig-U10660-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U12792-1 (Contig-U12792-1Q) /CSM_Contig/Conti...    40  0.007
Contig-U13836-1 (Contig-U13836-1Q) /CSM_Contig/Conti...    38  0.028
Contig-U11667-1 (Contig-U11667-1Q) /CSM_Contig/Conti...    38  0.028
Contig-U11303-1 (Contig-U11303-1Q) /CSM_Contig/Conti...    38  0.028
Contig-U09481-1 (Contig-U09481-1Q) /CSM_Contig/Conti...    38  0.028
Contig-U09392-1 (Contig-U09392-1Q) /CSM_Contig/Conti...    38  0.028
Contig-U06707-1 (Contig-U06707-1Q) /CSM_Contig/Conti...    38  0.028
Contig-U06284-1 (Contig-U06284-1Q) /CSM_Contig/Conti...    38  0.028

>Contig-U11717-1 (Contig-U11717-1Q) /CSM_Contig/Contig-U11717-1Q.Seq.d
          Length = 1580

 Score = 2028 bits (1023), Expect = 0.0
 Identities = 1053/1053 (100%)
 Strand = Plus / Plus

                                                                        
Query: 332  gaatttattgaaaagtattcaaaaaagaaagcaccatttggatttggagtattgggtgag 391
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332  gaatttattgaaaagtattcaaaaaagaaagcaccatttggatttggagtattgggtgag 391

                                                                        
Query: 392  attgtatatagaagaagttattcgagagttaaagaggataatacaaatgaacaatggttt 451
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392  attgtatatagaagaagttattcgagagttaaagaggataatacaaatgaacaatggttt 451

                                                                        
Query: 452  gaaaccgttgagagagttgtaaatggtacatataatattcaaaggaaatggatagaaaga 511
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452  gaaaccgttgagagagttgtaaatggtacatataatattcaaaggaaatggatagaaaga 511

                                                                        
Query: 512  catggtttagaatggaatcaaaataaagctcaaaaatctgcacaagaaatgtataatcgt 571
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512  catggtttagaatggaatcaaaataaagctcaaaaatctgcacaagaaatgtataatcgt 571

                                                                        
Query: 572  atatttgaaatgaagtttttaccacctggtagaggtttatattcttgtggttcttcaacc 631
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572  atatttgaaatgaagtttttaccacctggtagaggtttatattcttgtggttcttcaacc 631

                                                                        
Query: 632  tactgaatcaaaannnnnnnnnnccatgagtggtatagcacagttcattcatttcaatgg 691
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632  tactgaatcaaaannnnnnnnnnccatgagtggtatagcacagttcattcatttcaatgg 691

                                                                        
Query: 692  ggtgcatcaacttaaggattggtgtgtcaatggtttcaagcttttgaatgaattggatga 751
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692  ggtgcatcaacttaaggattggtgtgtcaatggtttcaagcttttgaatgaattggatga 751

                                                                        
Query: 752  gaagtattccgagtggttggcaataccgaaatcaataaagagaacatcgattaaaccaag 811
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752  gaagtattccgagtggttggcaataccgaaatcaataaagagaacatcgattaaaccaag 811

                                                                        
Query: 812  tggcactgtgtcgttgttggctggtgccacacctggcatgcattatccgatatctgaata 871
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812  tggcactgtgtcgttgttggctggtgccacacctggcatgcattatccgatatctgaata 871

                                                                        
Query: 872  ttacattagacgtataagaattcaaaaagagagtaacctaattccaccattggtagaagc 931
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872  ttacattagacgtataagaattcaaaaagagagtaacctaattccaccattggtagaagc 931

                                                                        
Query: 932  cggctaccatgttgagccagcctttgagaatagtaccaatgttgtagttgaaatacccat 991
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 932  cggctaccatgttgagccagcctttgagaatagtaccaatgttgtagttgaaatacccat 991

                                                                        
Query: 992  tcattcaggtaaaggtattagatctgcaaattcaataacaatgtgggaacaattatcatt 1051
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 992  tcattcaggtaaaggtattagatctgcaaattcaataacaatgtgggaacaattatcatt 1051

                                                                        
Query: 1052 agcttcttttcttcaaaaatattgggctgataatcaagtgagttgtacagtctcttttga 1111
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1052 agcttcttttcttcaaaaatattgggctgataatcaagtgagttgtacagtctcttttga 1111

                                                                        
Query: 1112 tccaattaaagagggtccacaattaaaacatgccttagattactttcaatatcaattaaa 1171
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1112 tccaattaaagagggtccacaattaaaacatgccttagattactttcaatatcaattaaa 1171

                                                                        
Query: 1172 aggtgtatcatttttaccaaattcttcaacaactacatctgtttataaacaaatgcctta 1231
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1172 aggtgtatcatttttaccaaattcttcaacaactacatctgtttataaacaaatgcctta 1231

                                                                        
Query: 1232 tgaagaaattgatgaaactcgttacaaccaaatcattgctaacctaaaacctgttgattt 1291
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1232 tgaagaaattgatgaaactcgttacaaccaaatcattgctaacctaaaacctgttgattt 1291

                                                                        
Query: 1292 tcaaaagttaaataattcccctttagagcctactcctgataaattttgtgattcttcaag 1351
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1292 tcaaaagttaaataattcccctttagagcctactcctgataaattttgtgattcttcaag 1351

                                             
Query: 1352 ttgtacaattgtttctgataattctgaaacact 1384
            |||||||||||||||||||||||||||||||||
Sbjct: 1352 ttgtacaattgtttctgataattctgaaacact 1384


 Score =  498 bits (251), Expect = e-140
 Identities = 251/251 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaattgtgttttaaagttcattgtttacattctttaaaaagaataaaaacatacacaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aaaattgtgttttaaagttcattgtttacattctttaaaaagaataaaaacatacacaca 60

                                                                       
Query: 61  atatctctaatagagataacaacaaaatatgttaactattaaaagattacttttaaatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  atatctctaatagagataacaacaaaatatgttaactattaaaagattacttttaaatca 120

                                                                       
Query: 121 aaacctatttaaaagtagttgtaattccacaggtatcatttcaattaattacaatagtaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaacctatttaaaagtagttgtaattccacaggtatcatttcaattaattacaatagtaa 180

                                                                       
Query: 181 taataaaatttgttttttcagttcttcttcaacattaataaataaaactaatgaaatttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 taataaaatttgttttttcagttcttcttcaacattaataaataaaactaatgaaatttt 240

                      
Query: 241 agatattgaag 251
           |||||||||||
Sbjct: 241 agatattgaag 251


 Score =  147 bits (74), Expect = 4e-35
 Identities = 74/74 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1453 ctcgataatttccaaaaattattataatattagatggaataatagcgattcttattttgg 1512
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1453 ctcgataatttccaaaaattattataatattagatggaataatagcgattcttattttgg 1512

                          
Query: 1513 taatttacatcatc 1526
            ||||||||||||||
Sbjct: 1513 taatttacatcatc 1526


 Score = 34.2 bits (17), Expect = 0.44
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 272 gaaatatcatcatcacc 288
           |||||||||||||||||
Sbjct: 272 gaaatatcatcatcacc 288


>Contig-U10660-1 (Contig-U10660-1Q) /CSM_Contig/Contig-U10660-1Q.Seq.d
          Length = 583

 Score = 42.1 bits (21), Expect = 0.002
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 1230 tatgaagaaattgatgaaact 1250
            |||||||||||||||||||||
Sbjct: 455  tatgaagaaattgatgaaact 475


>Contig-U12792-1 (Contig-U12792-1Q) /CSM_Contig/Contig-U12792-1Q.Seq.d
          Length = 730

 Score = 40.1 bits (20), Expect = 0.007
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 768 ttggcaataccgaaatcaat 787
           ||||||||||||||||||||
Sbjct: 336 ttggcaataccgaaatcaat 317


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 25,238
Number of Sequences: 6905
Number of extensions: 25238
Number of successful extensions: 3122
Number of sequences better than 10.0: 362
length of query: 1580
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1564
effective length of database: 5,564,391
effective search space: 8702707524
effective search space used: 8702707524
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.26
Homology vs DNA 
Query= Contig-U11717-1 (Contig-U11717-1Q) /CSM_Contig/Contig-U11717-1Q.Seq.d
         (1580 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ446496) Dictyostelium discoideum cDNA clone:ddv62l23, 3' ...  1407   0.0    1
(BJ442524) Dictyostelium discoideum cDNA clone:ddv50l03, 3' ...  1368   0.0    2
(BJ383095) Dictyostelium discoideum cDNA clone:ddc46i19, 3' ...  1219   0.0    1
(BJ378900) Dictyostelium discoideum cDNA clone:ddc33o01, 3' ...  1179   0.0    1
(BJ445145) Dictyostelium discoideum cDNA clone:ddv58g14, 3' ...  1152   0.0    2
(BJ382887) Dictyostelium discoideum cDNA clone:ddc46p01, 3' ...  1068   0.0    2
(BJ440237) Dictyostelium discoideum cDNA clone:ddv43g01, 3' ...  1027   0.0    1
(BJ427588) Dictyostelium discoideum cDNA clone:ddv62l23, 5' ...   559   0.0    2
(BJ423713) Dictyostelium discoideum cDNA clone:ddv50l03, 5' ...   507   0.0    2
(BJ368468) Dictyostelium discoideum cDNA clone:ddc46i19, 5' ...   476   0.0    2
(BJ421554) Dictyostelium discoideum cDNA clone:ddv43g01, 5' ...   452   0.0    2
(BJ364841) Dictyostelium discoideum cDNA clone:ddc33o01, 5' ...   426   e-130  2
(AU061403) Dictyostelium discoideum slug cDNA, clone SLE118.      365   3e-96  1
(BJ426317) Dictyostelium discoideum cDNA clone:ddv58g14, 5' ...   222   3e-59  2
(EJ504199) 1095403674431 Global-Ocean-Sampling_GS-28-01-01-1...    70   3e-07  1
(EJ387773) 1092963836260 Global-Ocean-Sampling_GS-28-01-01-1...    38   0.014  2
(EJ121741) 1092343375483 Global-Ocean-Sampling_GS-27-01-01-1...    34   0.021  3
(EK083226) 1092961120847 Global-Ocean-Sampling_GS-31-01-01-1...    52   0.066  1
(EJ439820) 1093015299699 Global-Ocean-Sampling_GS-28-01-01-1...    50   0.26   1
(EJ330771) 1092963433551 Global-Ocean-Sampling_GS-28-01-01-1...    50   0.26   1
(EJ401427) 1093012055566 Global-Ocean-Sampling_GS-28-01-01-1...    34   0.53   4
(AL354668) Human DNA sequence from clone RP11-506P24 on chro...    36   0.56   2
(CK522332) rswea0_007640.y1 swe Bombyx mori cDNA, mRNA seque...    32   0.57   4
(DC533039) Bombyx mori cDNA, clone:E_ET_J150_05A08_R_0, 3' e...    32   0.65   4
(BY647960) Mus musculus visual cortex cDNA, RIKEN full-lengt...    46   0.72   2
(AV399065) Bombyx mori cDNA clone:NV060621.                        32   0.76   4
(CT573126) Zebrafish DNA sequence from clone CH73-1O10 in li...    40   1.0    4
(BX470104) Zebrafish DNA sequence from clone DKEY-148M7.           48   1.0    1
(BX001006) Zebrafish DNA sequence from clone DKEY-148M7 in l...    48   1.0    1
(AC158380) Mus musculus BAC clone RP24-178I16 from chromosom...    48   1.0    1
(AC138621) Mus musculus BAC clone RP23-273E16 from 6, comple...    48   1.0    1
(AL627165) Human DNA sequence from clone RP11-439P9 on chrom...    48   1.0    1
(AL049175) Human DNA sequence from clone RP5-1110P6 on chrom...    48   1.0    1
(AC197515) Pan troglodytes chromosome X clone CH251-520O4, W...    48   1.0    1
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    34   1.3    13
(Z68159) Caenorhabditis elegans Cosmid C33D9.                      40   1.4    3
(EJ554411) 1092959483373 Global-Ocean-Sampling_GS-29-01-01-1...    38   1.5    2
(AC176914) Strongylocentrotus purpuratus clone R3-1104L12, W...    36   1.7    5
(AC010201) Homo sapiens 12 BAC RP11-1109F11 (Roswell Park Ca...    38   2.3    5
(AC181492) Strongylocentrotus purpuratus clone R3-1111G11, W...    36   2.7    5
(AC216521) Felis catus clone RP86-323K10, WORKING DRAFT SEQU...    46   3.0    7
(CU075912) Zebrafish DNA sequence from clone CH73-34P21 in l...    44   3.4    3
(BX571777) Zebrafish DNA sequence from clone CH211-260F1 in ...    46   4.1    1
(BX005414) Zebrafish DNA sequence from clone DKEY-21C19 in l...    46   4.1    1
(BX005387) Zebrafish DNA sequence from clone DKEY-97G16 in l...    46   4.1    1
(CT030196) Mouse DNA sequence from clone RP23-282B14 on chro...    46   4.1    1
(AC155238) Mus musculus BAC clone RP24-445E24 from chromosom...    46   4.1    1
(AC132336) Mus musculus BAC clone RP24-230N9 from chromosome...    46   4.1    1
(AC124119) Mus musculus chromosome 12, clone RP23-220M9, com...    46   4.1    1
(AC123705) Mus musculus chromosome 12, clone RP23-355K21, co...    46   4.1    1
(Z97338) Arabidopsis thaliana DNA chromosome 4, ESSA I FCA c...    46   4.1    1
(AL161541) Arabidopsis thaliana DNA chromosome 4, contig fra...    46   4.1    1
(AX509460) Sequence 4155 from Patent WO0216655.                    46   4.1    1
(AC120289) Rattus norvegicus clone CH230-72O1, WORKING DRAFT...    46   4.1    1
(AC100611) Mus musculus clone RP23-160B9, LOW-PASS SEQUENCE ...    46   4.1    1
(CR812925) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   4.1    1
(AC230511) Bos taurus clone CH240-506K18, WORKING DRAFT SEQU...    46   4.1    1
(AC215977) Felis catus clone RP86-49B19, WORKING DRAFT SEQUE...    46   4.1    1
(AC215769) Felis catus clone RP86-102C7, WORKING DRAFT SEQUE...    46   4.1    1
(AC164254) Bos taurus clone CH240-150C20, *** SEQUENCING IN ...    46   4.1    1
(DU247783) 1098574290533 CHORI-243 Ovis aries genomic clone ...    46   4.1    1
(CW983379) KBrH008L10F KBrH, Brassica rapa HindIII BAC libra...    46   4.1    1
(CU274845) Equus caballus GSS, BAC clone CH241-430H6, T7 end...    46   4.1    1
(CU009045) Equus caballus GSS, BAC clone CH241-79L11, SP6 en...    46   4.1    1
(EE487392) est_rlcom013_d08 est_rlcom Trichoderma atroviride...    46   4.1    1
(EB955150) 14782014 ZF35 Danio rerio cDNA clone 3433283, mRN...    46   4.1    1
(DY565483) AGENCOURT_69896482 NIH_ZGC_25 Danio rerio cDNA cl...    46   4.1    1
(DN899424) nap44h10.y1 Zebrafish anterior segment (minus len...    46   4.1    1
(CJ995143) Saccharomyces pastorianus mRNA, clone: B076-33, 5...    46   4.1    1
(EY676360) CS00-C1-401-021-G12-CT.F Sweet orange leaf, infec...    46   4.1    1
(AC181625) Strongylocentrotus purpuratus clone R3-1105L11, W...    42   4.4    5
(AE014826) Plasmodium falciparum 3D7 chromosome 14 section 1...    38   4.4    11
(EL527180) EST_omor_eva_6333 omoreva mixed_tissue Osmerus mo...    40   5.4    2
(EL527179) EST_omor_eva_6332 omoreva mixed_tissue Osmerus mo...    40   5.6    2
(EJ303044) 1095390048183 Global-Ocean-Sampling_GS-27-01-01-1...    44   5.7    2
(AL031745) Plasmodium falciparum DNA from MAL1P2.                  32   6.7    12
(AC113328) Mus musculus chromosome 3, clone RP23-456E2, comp...    38   7.3    6
(CU633714) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    32   7.4    2
(AM432066) Vitis vinifera contig VV78X161014.26, whole genom...    34   8.2    2
(AC123042) Mus musculus BAC clone RP24-545O17 from 10, compl...    40   9.0    6
(AM637471) Entamoeba dispar GSS, clone dispar45f10.q1k.            34   9.3    3

>(BJ446496) Dictyostelium discoideum cDNA clone:ddv62l23, 3' end,
            single read.
          Length = 749

 Score = 1407 bits (710), Expect = 0.0
 Identities = 715/717 (99%)
 Strand = Plus / Minus


Query: 655  ccatgagtggtatagcacagttcattcatttcaatggggtgcatcaacttaaggattggt 714
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749  ccatgagtggtatagcacagttcattcatttcaatggggtgcatcaacttaaggattggt 690


Query: 715  gtgtcaatggtttcaagcttttgaatgaattggatgagaagtattccgagtggttggcaa 774
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689  gtgtcaatggtttcaagcttttgaatgaattggatgagaagtattccgagtggttggcaa 630


Query: 775  taccgaaatcaataaagagaacatcgattaaaccaagtggcactgtgtcgttgttggctg 834
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629  taccgaaatcaataaagagaacatcgattaaaccaagtggcactgtgtcgttgttggctg 570


Query: 835  gtgccacacctggcatgcattatccgatatctgaatattacattagacgtataagaattc 894
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569  gtgccacacctggcatgcattatccgatatctgaatattacattagacgtataagaattc 510


Query: 895  aaaaagagagtaacctaattccaccattggtagaagccggctaccatgttgagccagcct 954
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509  aaaaagagagtaacctaattccaccattggtagaagccggctaccatgttgagccagcct 450


Query: 955  ttgagaatagtaccaatgttgtagttgaaatacccattcattcaggtaaaggtattagat 1014
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449  ttgagaatagtaccaatgttgtagttgaaatacccattcattcaggtaaaggtattagat 390


Query: 1015 ctgcaaattcaataacaatgtgggaacaattatcattagcttcttttcttcaaaaatatt 1074
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389  ctgcaaattcaataacaatgtgggaacaattatcattagcttcttttcttcaaaaatatt 330


Query: 1075 gggctgataatcaagtgagttgtacagtctcttttgatccaattaaagagggtccacaat 1134
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 329  gggctgataatcaagtgagttgtacagtctcttttgatccaattaaagagggtccgcaat 270


Query: 1135 taaaacatgccttagattactttcaatatcaattaaaaggtgtatcatttttaccaaatt 1194
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269  taaaacatgccttagattactttcaatatcaattaaaaggtgtatcatttttaccaaatt 210


Query: 1195 cttcaacaactacatctgtttataaacaaatgccttatgaagaaattgatgaaactcgtt 1254
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209  cttcaacaactacatctgtttataaacaaatgccttatgaagaaattgatgaaactcgtt 150


Query: 1255 acaaccaaatcattgctaacctaaaacctgttgattttcaaaagttaaataattcccctt 1314
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149  acaaccaaatcattgctaacctaaaacctgttgattttcaaaagttaaataattcccctt 90


Query: 1315 tagagcctactcctgataaattttgtgattcttcaagttgtacaattgtttctgata 1371
            |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 89   tagagcctactcctgataaattttgtnattcttcaagttgtacaattgtttctgata 33

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,654,283,184
Number of extensions: 101438094
Number of successful extensions: 8351682
Number of sequences better than 10.0: 81
Length of query: 1580
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1556
Effective length of database: 97,308,875,965
Effective search space: 151412611001540
Effective search space used: 151412611001540
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.30
Homology vs Protein 
Query= Contig-U11717-1 (Contig-U11717-1Q) /CSM_Contig/Contig-U11717-1Q.Seq.d
         (1580 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(A6Q367) RecName: Full=Probable adenosylcobalamin-dependent ribo...   151   6e-35
(A8YW74) RecName: Full=Adenosylcobalamin-dependent ribonucleosid...   133   2e-29
(Q03PB4) RecName: Full=Adenosylcobalamin-dependent ribonucleosid...   132   3e-29
CP000413_1442(CP000413|pid:none) Lactobacillus gasseri ATCC 3332...   130   1e-28
(Q04CQ7) RecName: Full=Adenosylcobalamin-dependent ribonucleosid...   128   5e-28
L20047_1(L20047|pid:none) Lactobacillus leichmannii ribonucleosi...   127   1e-27
EU100884_13(EU100884|pid:none) Thermus phage P74-26, complete ge...    94   1e-17
CP000804_121(CP000804|pid:none) Roseiflexus castenholzii DSM 139...    92   5e-17
CP000686_4465(CP000686|pid:none) Roseiflexus sp. RS-1, complete ...    90   2e-16
DQ398043_50(DQ398043|pid:none) Mycobacteriophage Che12, complete...    89   4e-16
CP000875_4745(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ...    87   1e-15
EU744250_49(EU744250|pid:none) Mycobacterium phage Pukovnik, com...    87   2e-15
EF101928_838(EF101928|pid:none) Acanthocystis turfacea Chlorella...    86   4e-15
(O64240) RecName: Full=Putative adenosylcobalamin-dependent ribo...    86   4e-15
AF189021_21(AF189021|pid:none) Roseophage SIO1 complete genome.        83   2e-14
CP000721_2488(CP000721|pid:none) Clostridium beijerinckii NCIMB ...    83   2e-14
(Q05262) RecName: Full=Putative adenosylcobalamin-dependent ribo...    82   5e-14
(Q857H2) RecName: Full=Putative adenosylcobalamin-dependent ribo...    80   2e-13
AP009384_3589(AP009384|pid:none) Azorhizobium caulinodans ORS 57...    78   1e-12
AP008955_1385(AP008955|pid:none) Brevibacillus brevis NBRC 10059...    67   1e-09
BX908798_111(BX908798|pid:none) Parachlamydia-related symbiont U...    67   1e-09
CP000552_735(CP000552|pid:none) Prochlorococcus marinus str. MIT...    65   7e-09
CP000576_715(CP000576|pid:none) Prochlorococcus marinus str. MIT...    65   9e-09
CP000553_713(CP000553|pid:none) Prochlorococcus marinus str. NAT...    65   9e-09
CP000825_743(CP000825|pid:none) Prochlorococcus marinus str. MIT...    65   9e-09
CP000111_693(CP000111|pid:none) Prochlorococcus marinus str. MIT...    65   9e-09
CP000878_772(CP000878|pid:none) Prochlorococcus marinus str. MIT...    64   1e-08
BA000039_1326(BA000039|pid:none) Thermosynechococcus elongatus B...    63   3e-08
CP000554_1407(CP000554|pid:none) Prochlorococcus marinus str. MI...    63   3e-08
AF496055_1(AF496055|pid:none) Lactobacillus delbrueckii subsp. l...    63   3e-08
AE017126_813(AE017126|pid:none) Prochlorococcus marinus subsp. m...    62   6e-08
BX548174_727(BX548174|pid:none) Prochlorococcus marinus MED4 com...    61   1e-07
CP000117_1667(CP000117|pid:none) Anabaena variabilis ATCC 29413,...    61   1e-07
CP000815_778(CP000815|pid:none) Paulinella chromatophora chromat...    61   1e-07
CP000097_1190(CP000097|pid:none) Synechococcus sp. CC9902, compl...    60   2e-07
CP000435_1234(CP000435|pid:none) Synechococcus sp. CC9311, compl...    60   3e-07
AD2310(AD2310) hypothetical protein all4035 [imported] - Nostoc ...    60   3e-07
AF338467_27(AF338467|pid:none) Cyanophage P60, complete genome.        60   3e-07
CP000239_2066(CP000239|pid:none) Synechococcus sp. JA-3-3Ab, com...    59   4e-07
CT971583_1496(CT971583|pid:none) Synechococcus WH7803 complete g...    56   4e-06
AF496397_1(AF496397|pid:none) Lactobacillus delbrueckii subsp. l...    52   8e-05
AE010299_1619(AE010299|pid:none) Methanosarcina acetivorans str....    44   0.022
CP000148_1283(CP000148|pid:none) Geobacter metallireducens GS-15...    43   0.037
CP001322_921(CP001322|pid:none) Desulfatibacillum alkenivorans A...    42   0.082
CP000393_355(CP000393|pid:none) Trichodesmium erythraeum IMS101,...    41   0.11
AE017180_1859(AE017180|pid:none) Geobacter sulfurreducens PCA, c...    41   0.11
CP001124_1187(CP001124|pid:none) Geobacter bemidjiensis Bem, com...    40   0.24
CP001390_2989(CP001390|pid:none) Geobacter sp. FRC-32, complete ...    40   0.31
CT573071_131(CT573071|pid:none) Kuenenia stuttgartiensis genome ...    39   0.41
CP000027_610(CP000027|pid:none) Dehalococcoides ethenogenes 195,...    39   0.53
CP000688_589(CP000688|pid:none) Dehalococcoides sp. BAV1, comple...    39   0.53
CP000923_800(CP000923|pid:none) Thermoanaerobacter sp. X514, com...    39   0.53
AJ965256_505(AJ965256|pid:none) Dehalococcoides sp. CBDB1 comple...    39   0.53
CP000698_2224(CP000698|pid:none) Geobacter uraniireducens Rf4, c...    39   0.53
CP000478_256(CP000478|pid:none) Syntrophobacter fumaroxidans MPO...    39   0.69
CP001098_2202(CP001098|pid:none) Halothermothrix orenii H 168, c...    38   0.91
AE008384_2830(AE008384|pid:none) Methanosarcina mazei strain Goe...    38   0.91
CP001229_109(CP001229|pid:none) Sulfurihydrogenibium azorense Az...    38   1.2
CP000924_325(CP000924|pid:none) Thermoanaerobacter pseudethanoli...    37   2.0
CP000252_2459(CP000252|pid:none) Syntrophus aciditrophicus SB, c...    37   2.0
CP001089_2295(CP001089|pid:none) Geobacter lovleyi SZ, complete ...    37   2.6
BX293980_812(BX293980|pid:none) Mycoplasma mycoides subsp. mycoi...    36   4.5
AB125991_1(AB125991|pid:none) Syngrapha ain mitochondrial ND5 ge...    36   4.5
CU466930_868(CU466930|pid:none) Candidatus Cloacamonas acidamino...    36   4.5
AL445565_14(AL445565|pid:none) Mycoplasma pulmonis (strain UAB C...    35   5.9
AE017245_393(AE017245|pid:none) Mycoplasma synoviae 53, complete...    35   7.7

>(A6Q367) RecName: Full=Probable adenosylcobalamin-dependent
            ribonucleoside-triphosphate reductase;
            Short=RTPR;          EC=1.17.4.2;
            &AP009178_814(AP009178|pid:none)
          Length = 650

 Score =  151 bits (382), Expect = 6e-35
 Identities = 80/236 (33%), Positives = 133/236 (56%), Gaps = 1/236 (0%)
 Frame = +3

Query: 657  MSGIAQFIHFNGVHQLKDWCVNGFKLLNELDEKYSEWLAIPKSIKRTSIKPSGTVSLLAG 836
            +SG+A  I   G+  +  W   G++ +  ++E+ ++   IP S+K T +KPSGT+S+LAG
Sbjct: 420  VSGVADAIEKFGLETIIKWLRKGYEKVRTVNERLAKEAGIPVSLKVTCVKPSGTISILAG 479

Query: 837  ATPGMHYPISEYYIRRIRIQKESNLIPPLVEAGYHVEPAFENSTNVVVEIPIHSGKGIRS 1016
             +PGMHYP++ Y +RRIRI K S L   L+++G   E    +  + V   PIH     RS
Sbjct: 480  TSPGMHYPLATYALRRIRIGKTSKLAKLLIDSGLSFEEDIYDKNSYVFAFPIHYDNP-RS 538

Query: 1017 ANSITMWEQLSLASFLQKYWADNQVSCTVSFDPIK-EGPQLKHALDYFQYQLKGVSFLPN 1193
               + ++EQ+ + + LQ+ WADN VS T+ FDP + +   L   + +F   +K ++ LP
Sbjct: 539  IKEVDIYEQMLVLTMLQREWADNMVSNTIQFDPTRYDAKDLSQIVKHFLPMIKSLTLLPE 598

Query: 1194 SSTTTSVYKQMPYEEIDETRYNQIIANLKPVDFQKLNNSPLEPTPDKFCDSSSCTI 1361
              T   +Y QMP+E I +  + + +  L  V++  L+    +   ++FC + SC I
Sbjct: 599  KET---IYPQMPFESIKKEEFEKRVTQLPKVEWNTLSGHHAD--SERFCSTQSCQI 649

 Score = 85.5 bits (210), Expect = 5e-15
 Identities = 38/86 (44%), Positives = 59/86 (68%)
 Frame = +2

Query: 368 FGFGVLGEIVYRRSYSRVKEDNTNEQWFETVERVVNGTYNIQRKWIERHGLEWNQNKAQK 547
           FGFG+L E+ + RSYSR+KED TNE W +TV RV  G ++I++     + L W++ +AQ
Sbjct: 24  FGFGLLSEVTFYRSYSRLKEDGTNEHWPDTVIRVTEGIFSIRKNHALNYHLPWDEEQAQI 83

Query: 548 SAQEMYNRIFEMKFLPPGRGLYSCGS 625
            A+E    + ++++LPPGRGL+  G+
Sbjct: 84  FAKEFALSMLQLRWLPPGRGLWMMGT 109

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 2,204,366,013
Number of extensions: 43240559
Number of successful extensions: 112867
Number of sequences better than 10.0: 66
Number of HSP's gapped: 112771
Number of HSP's successfully gapped: 80
Length of query: 526
Length of database: 1,051,180,864
Length adjustment: 133
Effective length of query: 393
Effective length of database: 620,718,517
Effective search space: 243942377181
Effective search space used: 243942377181
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.75  gvh: 0.56  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: Golgi

>> prediction for Contig-U11717-1 is cyt
VS (DIR, S) 0
VH (FL, L) 4
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 3
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0