Contig-U11697-1 |
Contig ID |
Contig-U11697-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
gap included |
Contig length |
4354 |
Chromosome number (1..6, M) |
2 |
Chromosome length |
8467578 |
Start point |
7063353 |
End point |
7058997 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
22 |
Number of EST |
39 |
Link to clone list |
U11697 |
List of clone(s) |
est1=SHI779F,1,639 est2=SHI428F,35,696 est3=CHN149F,38,657 est4=SHD250F,41,660 est5=CHM468F,51,366 est6=CHF390F,53,661 est7=CHE657F,58,698 est8=CHH438F,58,660 est9=SHL321F,60,698 est10=VFG508F,235,825 est11=VHF794F,386,702 est12=CHR479F,389,501 est13=CHL822F,718,1252 est14=VFG508Z,927,1498 est15=SHG673F,1499,2126 est16=CHM468Z,1981,2753 est17=CHF390Z,2205,2960 est18=SHL321Z,2213,2928 est19=SHD250Z,2215,2919 est20=CHE657Z,2242,2955 est21=CHH438Z,2249,2960 est22=CHR479Z,2305,2553 est23=VHF794Z,2433,2560 est24=CHN149Z,2517,2943 est25=AFL136F,2915,3282 est26=CFE234F,2991,3636 est27=CFB741F,3010,3572 est28=CHE457F,3020,3335 est29=CHC306F,3094,3746 est30=SLB571F,3231,3753 est31=SSC435Z,3434,4362 est32=SHG673Z,3559,4346 est33=CFB741Z,3591,4178 est34=CHE457Z,3623,4300 est35=SSC781Z,3646,4360 est36=CFE234Z,3895,4305 est37=SLB571Z,3907,4344 est38=AFL136Z,3982,4179 est39=CHC306Z,4058,4274
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Translated Amino Acid sequence |
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Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.25 |
Homology vs DNA |
Query= Contig-U11697-1 (Contig-U11697-1Q) /CSM_Contig/Contig-U11697-1Q.Seq.d (4364 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ395126) Dictyostelium discoideum cDNA clone:dds37a20, 5' ... 1245 0.0 1 (BJ413106) Dictyostelium discoideum cDNA clone:ddv14o01, 5' ... 1168 0.0 1 (BJ397390) Dictyostelium discoideum cDNA clone:dds46j05, 5' ... 1144 0.0 1 (BJ364372) Dictyostelium discoideum cDNA clone:ddc31a16, 5' ... 1142 0.0 1 (BJ395830) Dictyostelium discoideum cDNA clone:dds40h08, 5' ... 1140 0.0 1 (BJ407179) Dictyostelium discoideum cDNA clone:dds37a20, 3' ... 1068 0.0 2 (BJ376902) Dictyostelium discoideum cDNA clone:ddc30b16, 3' ... 1068 0.0 2 (BJ364740) Dictyostelium discoideum cDNA clone:ddc32d23, 5' ... 1061 0.0 1 (BJ365729) Dictyostelium discoideum cDNA clone:ddc36l10, 5' ... 1059 0.0 1 (BJ368892) Dictyostelium discoideum cDNA clone:ddc48a13, 5' ... 1053 0.0 1 (BJ396243) Dictyostelium discoideum cDNA clone:dds41n19, 5' ... 1027 0.0 1 (BJ373643) Dictyostelium discoideum cDNA clone:ddc4b11, 3' e... 928 0.0 3 (BJ363341) Dictyostelium discoideum cDNA clone:ddc26l01, 5' ... 890 0.0 3 (BJ361006) Dictyostelium discoideum cDNA clone:ddc9c10, 5' e... 817 0.0 2 (BJ383019) Dictyostelium discoideum cDNA clone:ddc46h18, 3' ... 773 0.0 2 (BJ360097) Dictyostelium discoideum cDNA clone:ddc4b11, 5' e... 690 0.0 2 (BJ408529) Dictyostelium discoideum cDNA clone:dds46j05, 3' ... 617 0.0 3 (BJ405069) Dictyostelium discoideum cDNA clone:dds30c14, 3' ... 617 0.0 3 (BJ378770) Dictyostelium discoideum cDNA clone:ddc32d23, 3' ... 617 0.0 4 (BJ378301) Dictyostelium discoideum cDNA clone:ddc31a16, 3' ... 617 0.0 4 (BJ379910) Dictyostelium discoideum cDNA clone:ddc36l10, 3' ... 609 0.0 4 (C84102) Dictyostelium discoideum slug cDNA, clone SSC781. 987 0.0 3 (BJ393208) Dictyostelium discoideum cDNA clone:dds30c14, 5' ... 603 0.0 2 (AU060812) Dictyostelium discoideum slug cDNA, clone SLB571. 880 0.0 2 (BJ409263) Dictyostelium discoideum cDNA clone:dds40h08, 3' ... 617 0.0 5 (AU051938) Dictyostelium discoideum slug cDNA, clone SSC435. 743 0.0 6 (BJ382564) Dictyostelium discoideum cDNA clone:ddc45l06, 3' ... 617 0.0 4 (BJ431443) Dictyostelium discoideum cDNA clone:ddv14o01, 3' ... 545 0.0 2 (BJ368069) Dictyostelium discoideum cDNA clone:ddc45l06, 5' ... 605 0.0 2 (BJ384163) Dictyostelium discoideum cDNA clone:ddc48a13, 3' ... 410 0.0 2 (BJ374609) Dictyostelium discoideum cDNA clone:ddc9c10, 3' e... 626 e-174 1 (AU033887) Dictyostelium discoideum slug cDNA, clone SLB571. 620 e-172 1 (BJ421507) Dictyostelium discoideum cDNA clone:ddv42l23, 5' ... 589 e-163 1 (BJ364181) Dictyostelium discoideum cDNA clone:ddc30b16, 5' ... 373 e-160 2 (BJ328206) Dictyostelium discoideum cDNA clone:dda23g09, 5' ... 264 e-150 3 (BJ368412) Dictyostelium discoideum cDNA clone:ddc46h18, 5' ... 480 e-130 1 (AF202725) Dictyostelium discoideum NPC1 protein mRNA, compl... 129 e-125 23 (AF202726) Dictyostelium discoideum NPC1 protein gene, compl... 129 e-125 23 (BJ377844) Dictyostelium discoideum cDNA clone:ddc26l01, 3' ... 311 1e-79 1 (BJ345319) Dictyostelium discoideum cDNA clone:dda23g09, 3' ... 248 2e-60 1 (BJ440183) Dictyostelium discoideum cDNA clone:ddv42l23, 3' ... 242 9e-59 1 (BJ386029) Dictyostelium discoideum cDNA clone:ddc56n20, 3' ... 159 8e-44 3 (BJ371168) Dictyostelium discoideum cDNA clone:ddc56n20, 5' ... 123 4e-39 2 (BJ359736) Dictyostelium discoideum cDNA clone:ddc2a10, 5' e... 119 1e-26 3 (BJ370002) Dictyostelium discoideum cDNA clone:ddc52f20, 5' ... 117 5e-26 3 (BJ362121) Dictyostelium discoideum cDNA clone:ddc20i12, 5' ... 129 6e-25 2 (BJ360383) Dictyostelium discoideum cDNA clone:ddc5h22, 5' e... 129 1e-24 1 (BJ371005) Dictyostelium discoideum cDNA clone:ddc56e10, 5' ... 68 6e-20 4 (BJ406756) Dictyostelium discoideum cDNA clone:dds36h07, 3' ... 62 3e-19 6 (BJ401781) Dictyostelium discoideum cDNA clone:dds19j12, 3' ... 62 3e-18 5 (BJ405544) Dictyostelium discoideum cDNA clone:dds32e04, 3' ... 62 4e-18 5 (BJ379874) Dictyostelium discoideum cDNA clone:ddc36d09, 3' ... 62 4e-18 5 (BJ407885) Dictyostelium discoideum cDNA clone:dds43p22, 3' ... 62 4e-18 5 (BJ350829) Dictyostelium discoideum cDNA clone:dda41l04, 3' ... 62 4e-18 5 (BJ442077) Dictyostelium discoideum cDNA clone:ddv48d20, 3' ... 62 4e-18 5 (BJ407141) Dictyostelium discoideum cDNA clone:dds37h17, 3' ... 62 4e-18 5 (BJ356590) Dictyostelium discoideum cDNA clone:dda60e21, 3' ... 62 4e-18 5 (BJ357289) Dictyostelium discoideum cDNA clone:dda63f04, 3' ... 62 4e-18 5 (BJ405007) Dictyostelium discoideum cDNA clone:dds30g08, 3' ... 62 4e-18 5 (BJ380014) Dictyostelium discoideum cDNA clone:ddc36p18, 3' ... 62 4e-18 5 (BJ405537) Dictyostelium discoideum cDNA clone:dds32d02, 3' ... 62 2e-17 5 (BJ348652) Dictyostelium discoideum cDNA clone:dda33l19, 3' ... 62 6e-17 4 (BJ393626) Dictyostelium discoideum cDNA clone:dds32d02, 5' ... 70 1e-16 5 (BJ395088) Dictyostelium discoideum cDNA clone:dds37h17, 5' ... 68 1e-16 3 (BJ403934) Dictyostelium discoideum cDNA clone:dds26c23, 3' ... 62 2e-16 4 (BJ405874) Dictyostelium discoideum cDNA clone:dds33h10, 3' ... 62 2e-16 4 (BJ392877) Dictyostelium discoideum cDNA clone:dds29c09, 5' ... 62 5e-16 5 (BJ439689) Dictyostelium discoideum cDNA clone:ddv41e08, 3' ... 58 3e-15 4 (BJ393973) Dictyostelium discoideum cDNA clone:dds33h10, 5' ... 68 3e-15 4 (BJ394332) Dictyostelium discoideum cDNA clone:dds34p13, 5' ... 70 4e-15 5 (BJ338790) Dictyostelium discoideum cDNA clone:dda63f04, 5' ... 70 5e-15 5 (BJ371492) Dictyostelium discoideum cDNA clone:ddc58b10, 5' ... 66 7e-15 5 (BJ404198) Dictyostelium discoideum cDNA clone:dds27p17, 3' ... 56 1e-14 4 (BJ391719) Dictyostelium discoideum cDNA clone:dds24n20, 5' ... 70 1e-14 5 (BJ348421) Dictyostelium discoideum cDNA clone:dda33m06, 3' ... 52 4e-14 4 (BJ366787) Dictyostelium discoideum cDNA clone:ddc40b11, 5' ... 60 7e-14 5 (BJ338256) Dictyostelium discoideum cDNA clone:dda60n16, 5' ... 60 8e-14 5 (BJ427627) Dictyostelium discoideum cDNA clone:ddv63e01, 5' ... 68 3e-13 3 (BJ420357) Dictyostelium discoideum cDNA clone:ddv39e02, 5' ... 68 3e-13 3 (BJ424942) Dictyostelium discoideum cDNA clone:ddv54j01, 5' ... 68 3e-13 3 (BJ423313) Dictyostelium discoideum cDNA clone:ddv48d20, 5' ... 68 3e-13 3 (BJ393633) Dictyostelium discoideum cDNA clone:dds32e04, 5' ... 68 3e-13 3 (BJ420976) Dictyostelium discoideum cDNA clone:ddv41e08, 5' ... 68 3e-13 3 (BJ393157) Dictyostelium discoideum cDNA clone:dds30g08, 5' ... 68 3e-13 3 (BJ365823) Dictyostelium discoideum cDNA clone:ddc36p18, 5' ... 70 3e-13 4 (BJ364705) Dictyostelium discoideum cDNA clone:ddc32l15, 5' ... 70 4e-13 4 (BJ395647) Dictyostelium discoideum cDNA clone:dds39k18, 5' ... 70 4e-13 4 (BJ338295) Dictyostelium discoideum cDNA clone:dda60f21, 5' ... 70 1e-12 4 (BJ336406) Dictyostelium discoideum cDNA clone:dda53f19, 5' ... 70 1e-12 4 (BJ392456) Dictyostelium discoideum cDNA clone:dds27p17, 5' ... 70 2e-12 4 (BJ392901) Dictyostelium discoideum cDNA clone:dds29i10, 5' ... 70 2e-12 4 (BJ396789) Dictyostelium discoideum cDNA clone:dds43p22, 5' ... 70 2e-12 4 (BJ394535) Dictyostelium discoideum cDNA clone:dds35e16, 5' ... 70 2e-12 4 (BJ394747) Dictyostelium discoideum cDNA clone:dds36h07, 5' ... 70 3e-12 4 (BJ339403) Dictyostelium discoideum cDNA clone:dda65p03, 5' ... 60 8e-12 5 (BJ440072) Dictyostelium discoideum cDNA clone:ddv42e17, 3' ... 46 2e-11 4 (BJ338529) Dictyostelium discoideum cDNA clone:dda61k20, 5' ... 70 3e-11 3 (BJ355543) Dictyostelium discoideum cDNA clone:dda57n10, 3' ... 48 9e-11 4 (BJ365695) Dictyostelium discoideum cDNA clone:ddc36d09, 5' ... 70 1e-08 3 (BJ337237) Dictyostelium discoideum cDNA clone:dda56a23, 5' ... 70 1e-08 3
>(BJ395126) Dictyostelium discoideum cDNA clone:dds37a20, 5' end, single read. Length = 628
Score = 1245 bits (628), Expect = 0.0 Identities = 628/628 (100%) Strand = Plus / Plus
Query: 1508 cggtccattctatcgtgttgaacaattaattttaataccaaaacaaaagaatttatcaac 1567 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 cggtccattctatcgtgttgaacaattaattttaataccaaaacaaaagaatttatcaac 60
Query: 1568 gattttcaattatgatttatttaaatcattaattgatatagagacacaactaatgaagaa 1627 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 gattttcaattatgatttatttaaatcattaattgatatagagacacaactaatgaagaa 120
Query: 1628 tacaagtgtaaagcttaatgatggttcaaataggattataacattggatcaattatgttt 1687 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 tacaagtgtaaagcttaatgatggttcaaataggattataacattggatcaattatgttt 180
Query: 1688 tgaacctactaaacgtggttgtttggttgagagtataacaggtatttttcaacgtgatca 1747 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 tgaacctactaaacgtggttgtttggttgagagtataacaggtatttttcaacgtgatca 240
Query: 1748 aaataaattaaatcaacaaaaggataatgtaattggttggtttgaacaatgtaaatcaca 1807 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 aaataaattaaatcaacaaaaggataatgtaattggttggtttgaacaatgtaaatcaca 300
Query: 1808 attactttcaccagaatgtatggattcaactggtgtacctgtaaatccaaagatagtatt 1867 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 attactttcaccagaatgtatggattcaactggtgtacctgtaaatccaaagatagtatt 360
Query: 1868 gggtggttggaatgataattcaacgttggcaaaagcatttgtcaccactttcctattgaa 1927 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 gggtggttggaatgataattcaacgttggcaaaagcatttgtcaccactttcctattgaa 420
Query: 1928 taatccagattcaatgattgatagatcaatgatgtgggaacaagtttggttaaataaaat 1987 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 taatccagattcaatgattgatagatcaatgatgtgggaacaagtttggttaaataaaat 480
Query: 1988 tcaagagatttcaaatgatccttcatgtccattcgaaatatcattcaatgctcaaagatc 2047 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 tcaagagatttcaaatgatccttcatgtccattcgaaatatcattcaatgctcaaagatc 540
Query: 2048 agtacaagatgaattggcaagagaaggtaatgcagatataccaacgattatcgttagtta 2107 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 541 agtacaagatgaattggcaagagaaggtaatgcagatataccaacgattatcgttagtta 600
Query: 2108 tttcgttatgtttttatatatctccctt 2135 |||||||||||||||||||||||||||| Sbjct: 601 tttcgttatgtttttatatatctccctt 628
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 4,674,692,867 Number of extensions: 281499247 Number of successful extensions: 23445451 Number of sequences better than 10.0: 276 Length of query: 4364 Length of database: 95,242,211,685 Length adjustment: 25 Effective length of query: 4339 Effective length of database: 97,216,030,006 Effective search space: 421820354196034 Effective search space used: 421820354196034 X1: 11 (21.8 bits) S2: 23 (46.1 bits)
|
protein update |
2009. 6.30 |
Homology vs Protein |
Query= Contig-U11697-1 (Contig-U11697-1Q) /CSM_Contig/Contig-U11697-1Q.Seq.d (4364 letters)
Database: nrp_B 3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
AF202725_1(AF202725|pid:none) Dictyostelium discoideum NPC1 prot... 783 0.0 AC025815_1(AC025815|pid:none) Arabidopsis thaliana chromosome 1 ... 172 5e-71 AE014134_1855(AE014134|pid:none) Drosophila melanogaster chromos... 201 2e-65 AF182744_1(AF182744|pid:none) Cricetulus griseus Niemann-Pick ty... 209 3e-65 BT009977_1(BT009977|pid:none) Drosophila melanogaster RE56428 fu... 201 7e-65 AL606694_11(AL606694|pid:none) Oryza sativa genomic DNA, chromos... 203 1e-64 BC151276_1(BC151276|pid:none) Bos taurus Niemann-Pick disease, t... 216 2e-64 AF299073_1(AF299073|pid:none) Bos taurus Niemann-Pick type C1 di... 211 2e-64 AB209048_1(AB209048|pid:none) Homo sapiens mRNA for Niemann-Pick... 204 2e-63 BC063302_1(BC063302|pid:none) Homo sapiens Niemann-Pick disease,... 204 2e-63 AK293779_1(AK293779|pid:none) Homo sapiens cDNA FLJ51802 complet... 164 2e-63 AM475051_1(AM475051|pid:none) Vitis vinifera contig VV78X161773.... 155 3e-63 (P56941) RecName: Full=Niemann-Pick C1 protein; Flags: Precursor... 210 4e-63 AF503634_1(AF503634|pid:none) Felis catus Niemann-Pick C1 mRNA, ... 208 9e-62 AF258783_1(AF258783|pid:none) Felis catus Niemann-Pick type C1 d... 208 9e-62 AY437865_1(AY437865|pid:none) Homo sapiens Niemann-Pick C1-like ... 189 6e-57 AE017345_256(AE017345|pid:none) Cryptococcus neoformans var. neo... 150 3e-56 (Q6T3U4) RecName: Full=Niemann-Pick C1-like protein 1; Flags: Pr... 201 7e-55 BC131788_1(BC131788|pid:none) Mus musculus NPC1-like 1, mRNA (cD... 202 7e-55 AE014298_3182(AE014298|pid:none) Drosophila melanogaster chromos... 216 7e-55 AM270237_2(AM270237|pid:none) Aspergillus niger contig An11c0200... 218 2e-54 AM920435_1530(AM920435|pid:none) Penicillium chrysogenum Wiscons... 218 2e-54 (Q6T3U3) RecName: Full=Niemann-Pick C1-like protein 1; Flags: Pr... 198 6e-54 CS723370_1(CS723370|pid:none) Sequence 1 from Patent WO200710080... 186 6e-54 AY667365_1(AY667365|pid:none) Ciona intestinalis isolate west co... 155 4e-53 AY667352_1(AY667352|pid:none) Ciona intestinalis isolate west co... 155 4e-53 AY667348_1(AY667348|pid:none) Ciona intestinalis isolate west co... 154 1e-52 CR382136_201(CR382136|pid:none) Debaryomyces hansenii strain CBS... 192 1e-51 (Q12200) RecName: Full=Niemann-Pick type C-related protein 1; Fl... 149 2e-51 CR382129_773(CR382129|pid:none) Yarrowia lipolytica strain CLIB1... 160 3e-51 AK154282_1(AK154282|pid:none) Mus musculus NOD-derived CD11c +ve... 207 4e-51 CR380958_385(CR380958|pid:none) Candida glabrata strain CBS138 c... 145 7e-50 FN357386_11(FN357386|pid:none) Schistosoma mansoni genome sequen... 167 2e-48 FN392319_472(FN392319|pid:none) Pichia pastoris GS115 chromosome... 195 1e-47 BC143756_1(BC143756|pid:none) Homo sapiens NPC1 (Niemann-Pick di... 189 8e-46 FM992688_1311(FM992688|pid:none) Candida dubliniensis CD36 chrom... 189 1e-45 AC007534_1(AC007534|pid:none) Genomic sequence for Arabidopsis t... 149 4e-42 AL035539_12(AL035539|pid:none) Arabidopsis thaliana DNA chromoso... 177 4e-42 T15961(T15961)hypothetical protein F02E8.6 - Caenorhabditis eleg... 114 9e-38 (Q19127) RecName: Full=Niemann-Pick C1 protein homolog 1; Flags:... 114 9e-38 AF192523_1(AF192523|pid:none) Homo sapiens truncated Niemann-Pic... 151 2e-34 (P34389) RecName: Full=Niemann-Pick C1 protein homolog 2; Flags:... 102 7e-34 AE016820_361(AE016820|pid:none) Ashbya gossypii (= Eremothecium ... 144 3e-32 EU886296_1(EU886296|pid:none) Monodelphis domestica Niemann-Pick... 136 6e-30 BX005238_10(BX005238|pid:none) Zebrafish DNA sequence from clone... 110 9e-24 AB210579_1(AB210579|pid:none) Ciona intestinalis mRNA for Nieman... 80 9e-24 AL935186_7(AL935186|pid:none) Zebrafish DNA sequence from clone ... 109 2e-23 DQ885491_1(DQ885491|pid:none) Arabidopsis halleri subsp. halleri... 109 1e-21 AE013599_144(AE013599|pid:none) Drosophila melanogaster chromoso... 105 1e-20 (O35595) RecName: Full=Protein patched homolog 2; Short... 104 3e-20 CR382329_1(CR382329|pid:none) Zebrafish DNA sequence from clone ... 103 7e-20 CP001333_215(CP001333|pid:none) Micromonas sp. RCC299 chromosome... 102 1e-19 (Q09614) RecName: Full=Protein patched homolog 1; &Z46812_1(Z46... 102 1e-19 T27969(T27969)hypothetical protein ZK675.1 - Caenorhabditis eleg... 102 1e-19 (Q9Y6C5) RecName: Full=Protein patched homolog 2; Short... 102 1e-19 AY358555_1(AY358555|pid:none) Homo sapiens clone DNA35621 Patche... 102 1e-19 AF087651_1(AF087651|pid:none) Homo sapiens patched 2 (PTCH2) mRN... 102 1e-19 AB037686_1(AB037686|pid:none) Xenopus laevis Xptch-1 mRNA for pa... 101 2e-19 AF302765_1(AF302765|pid:none) Xenopus laevis patched-1 (Ptc1) mR... 101 2e-19 AB188226_1(AB188226|pid:none) Meriones unguiculatus ptc mRNA for... 101 3e-19 EF442429_1(EF442429|pid:none) Apis mellifera scutellata patched-... 100 4e-19 (Q61115) RecName: Full=Protein patched homolog 1; Short... 100 4e-19 AY357891_1(AY357891|pid:none) Rattus norvegicus patched mRNA, co... 100 4e-19 (Q90693) RecName: Full=Protein patched homolog 1; Short... 99 1e-18 U59464_1(U59464|pid:none) Human PATCHED protein (PTC) mRNA, comp... 99 2e-18 (Q13635) RecName: Full=Protein patched homolog 1; Short... 99 2e-18 (Q0EEE2) RecName: Full=Patched domain-containing protein 3; AltN... 98 2e-18 DQ885512_1(DQ885512|pid:none) Arabidopsis lyrata subsp. petraea ... 98 3e-18 AM055942_157(AM055942|pid:none) Toxoplasma gondii RH, genomic DN... 97 7e-18 AL021482_3(AL021482|pid:none) Caenorhabditis elegans YAC Y39A1B,... 94 4e-17 CP001141_266(CP001141|pid:none) Phaeodactylum tricornutum CCAP 1... 93 8e-17 AB210626_1(AB210626|pid:none) Ciona intestinalis mRNA for patche... 92 2e-16 AY810857_1(AY810857|pid:none) Schistosoma japonicum SJCHGC04467 ... 84 2e-16 AC024746_5(AC024746|pid:none) Caenorhabditis elegans cosmid Y110... 91 4e-16 CP001575_510(CP001575|pid:none) Micromonas sp. RCC299 chromosome... 87 5e-15 U80447_8(U80447|pid:none) Caenorhabditis elegans cosmid F55F8, c... 87 7e-15 U28733_1(U28733|pid:none) Caenorhabditis elegans cosmid C54A12, ... 86 9e-15 T25600(T25600) hypothetical protein C32E8.8 - Caenorhabditis ele... 86 2e-14 Z69884_8(Z69884|pid:none) Caenorhabditis elegans Cosmid F31F6, c... 86 2e-14 CR954216_208(CR954216|pid:none) Ostreococcus tauri strain OTTH05... 85 2e-14 AF117898_1(AF117898|pid:none) Junonia coenia putative hedgehog r... 80 7e-13 T21612(T21612)hypothetical protein F31F6.5 - Caenorhabditis eleg... 79 2e-12 BC090541_1(BC090541|pid:none) Danio rerio Niemann-Pick disease, ... 78 3e-12 CP000600_299(CP000600|pid:none) Ostreococcus lucimarinus CCE9901... 77 6e-12 T16126(T16126)hypothetical protein F21H12.4 - Caenorhabditis ele... 74 5e-11 AB209495_1(AB209495|pid:none) Homo sapiens mRNA for patched vari... 70 9e-10 BC151166_1(BC151166|pid:none) Mus musculus similar to CG11212-PA... 69 2e-09 AK299301_1(AK299301|pid:none) Homo sapiens cDNA FLJ56419 complet... 69 2e-09 (Q6ZW05) RecName: Full=Patched domain-containing protein C6orf138; 69 2e-09 CP001329_475(CP001329|pid:none) Micromonas sp. RCC299 chromosome... 65 2e-08 S44797(S44797)F09G8.4 protein - Caenorhabditis elegans 64 6e-08 CP001576_388(CP001576|pid:none) Micromonas sp. RCC299 chromosome... 63 8e-08 BT075948_1(BT075948|pid:none) Caligus rogercresseyi clone crog-e... 63 1e-07 (Q96NR3) RecName: Full=Patched domain-containing protein 1; 62 1e-07 BC121061_1(BC121061|pid:none) Homo sapiens patched domain contai... 62 1e-07 AK298796_1(AK298796|pid:none) Homo sapiens cDNA FLJ56413 complet... 62 1e-07 AX647477_1(AX647477|pid:none) Sequence 1669 from Patent EP1270724. 62 1e-07 BT081204_1(BT081204|pid:none) Caligus clemensi clone ccle-evs-51... 62 2e-07 (Q14B62) RecName: Full=Patched domain-containing protein 1; &BC... 61 3e-07 BX088539_3(BX088539|pid:none) Mouse DNA sequence from clone RP23... 61 3e-07 T28706(T28706)hypothetical protein C41D7.2 - Caenorhabditis eleg... 60 5e-07 AK036111_1(AK036111|pid:none) Mus musculus 16 days neonate cereb... 60 7e-07 AF409095_1(AF409095|pid:none) Gallus gallus patched 2 (PTC2) mRN... 60 7e-07 AL032639_3(AL032639|pid:none) Caenorhabditis elegans YAC Y38F1A,... 59 1e-06 CP001205_241(CP001205|pid:none) Borrelia burgdorferi ZS7, comple... 59 1e-06 CP000588_126(CP000588|pid:none) Ostreococcus lucimarinus CCE9901... 59 2e-06 AL031745_66(AL031745|pid:none) Plasmodium falciparum DNA from MA... 59 2e-06 CP000395_254(CP000395|pid:none) Borrelia afzelii PKo, complete g... 57 6e-06 AL132949_35(AL132949|pid:none) Caenorhabditis elegans YAC Y53F4B... 57 8e-06 CR954208_135(CR954208|pid:none) Ostreococcus tauri strain OTTH05... 55 2e-05 AL034393_10(AL034393|pid:none) Caenorhabditis elegans YAC Y18D10... 55 2e-05 EF100663_1(EF100663|pid:none) Leucoraja erinacea patched 2 (Ptc2... 55 2e-05 EU814484_1(EU814484|pid:none) Scyliorhinus canicula patched 2 (p... 55 2e-05 CP000013_249(CP000013|pid:none) Borrelia garinii PBi, complete g... 55 2e-05 CP001098_839(CP001098|pid:none) Halothermothrix orenii H 168, co... 55 2e-05 AF043697_2(AF043697|pid:none) Caenorhabditis elegans cosmid F56C... 54 5e-05 Z47074_2(Z47074|pid:none) Caenorhabditis elegans Cosmid K07C10, ... 54 5e-05 T23399(T23399)hypothetical protein K07C10.1 - Caenorhabditis ele... 54 5e-05 CR954210_48(CR954210|pid:none) Ostreococcus tauri strain OTTH059... 52 1e-04 BC163557_1(BC163557|pid:none) Danio rerio dispatched homolog 1 (... 52 2e-04 BC100040_1(BC100040|pid:none) Danio rerio dispatched homolog 1 (... 52 2e-04 (Q6R5J2) RecName: Full=Protein dispatched homolog 1; AltName: Fu... 52 2e-04 AY395768_1(AY395768|pid:none) Homo sapiens patched gene, exon 18... 52 3e-04 EU429800_1(EU429800|pid:none) Gallus gallus Disp3 (DISP3) mRNA, ... 51 3e-04 AY144589_1(AY144589|pid:none) Mus musculus DISP1 mRNA, partial c... 51 3e-04 AK138276_1(AK138276|pid:none) Mus musculus adult male hypothalam... 51 3e-04 (Q3TDN0) RecName: Full=Protein dispatched homolog 1; AltName: Fu... 51 3e-04 AC006618_3(AC006618|pid:none) Caenorhabditis elegans cosmid C45B... 51 3e-04 AY150577_1(AY150577|pid:none) Mus musculus dispatched (Disp) mRN... 51 3e-04 AY150698_1(AY150698|pid:none) Mus musculus dispatched A mRNA, co... 51 3e-04 AK170113_1(AK170113|pid:none) Mus musculus NOD-derived CD11c +ve... 51 3e-04 AY887138_1(AY887138|pid:none) Ambystoma mexicanum patched-1 (ptc... 50 0.001 AC006670_2(AC006670|pid:none) Caenorhabditis elegans cosmid K07A... 49 0.001 CR954209_126(CR954209|pid:none) Ostreococcus tauri strain OTTH05... 49 0.001 AY395772_1(AY395772|pid:none) Homo sapiens patched gene, exon 23... 49 0.002 AK056569_1(AK056569|pid:none) Homo sapiens cDNA FLJ32007 fis, cl... 49 0.002 AL133092_1(AL133092|pid:none) Homo sapiens mRNA; cDNA DKFZp434I0... 49 0.002 BC011542_1(BC011542|pid:none) Homo sapiens dispatched homolog 1 ... 49 0.002 CP001326_556(CP001326|pid:none) Micromonas sp. RCC299 chromosome... 49 0.002 EU480880_1(EU480880|pid:none) Caenorhabditis remanei strain PB20... 48 0.003 EU480881_1(EU480881|pid:none) Caenorhabditis remanei strain PB21... 48 0.003 CP000614_2685(CP000614|pid:none) Burkholderia vietnamiensis G4 c... 47 0.005 AB384180_1(AB384180|pid:none) Synthetic construct DNA, clone: pF... 47 0.005 (Q9P2K9) RecName: Full=Patched domain-containing protein 2; AltN... 47 0.005 CP001503_2813(CP001503|pid:none) Burkholderia glumae BGR1 chromo... 47 0.005 CP000086_677(CP000086|pid:none) Burkholderia thailandensis E264 ... 47 0.008 AM747720_2816(AM747720|pid:none) Burkholderia cenocepacia J2315 ... 47 0.008 CP000378_1983(CP000378|pid:none) Burkholderia cenocepacia AU 105... 47 0.008 CP000440_2645(CP000440|pid:none) Burkholderia ambifaria AMMD chr... 47 0.008 AM747722_767(AM747722|pid:none) Burkholderia cenocepacia J2315 c... 46 0.011 CP000960_659(CP000960|pid:none) Burkholderia cenocepacia MC0-3 c... 46 0.011 BX294149_230(BX294149|pid:none) Rhodopirellula baltica SH 1 comp... 46 0.011 CP001053_533(CP001053|pid:none) Burkholderia phytofirmans PsJN c... 46 0.014 CP000993_237(CP000993|pid:none) Borrelia recurrentis A1, complet... 46 0.014 CP001365_2646(CP001365|pid:none) Halorubrum lacusprofundi ATCC 4... 46 0.014 CP000976_246(CP000976|pid:none) Borrelia duttonii Ly, complete g... 46 0.014 CP000817_4187(CP000817|pid:none) Lysinibacillus sphaericus C3-41... 45 0.018 CP000379_2176(CP000379|pid:none) Burkholderia cenocepacia AU 105... 45 0.018 CP001133_1015(CP001133|pid:none) Vibrio fischeri MJ11 chromosome... 45 0.018 CT573072_730(CT573072|pid:none) Kuenenia stuttgartiensis genome ... 45 0.018 CP000959_1358(CP000959|pid:none) Burkholderia cenocepacia MC0-3 ... 45 0.018 CP000151_2750(CP000151|pid:none) Burkholderia sp. 383 chromosome... 45 0.018 AY458646_10(AY458646|pid:none) Uncultured marine bacterium 578 c... 45 0.024 CP000150_84(CP000150|pid:none) Burkholderia sp. 383 chromosome 3... 45 0.024 AY325270_3(AY325270|pid:none) Burkholderia pseudomallei multidru... 45 0.031 CU207417_10(CU207417|pid:none) Mouse DNA sequence from clone DN-... 45 0.031 CP000271_2136(CP000271|pid:none) Burkholderia xenovorans LB400 c... 45 0.031 BX571965_823(BX571965|pid:none) Burkholderia pseudomallei strain... 45 0.031 (A3KFU9) RecName: Full=Patched domain-containing protein 2; AltN... 45 0.031 CP000472_3301(CP000472|pid:none) Shewanella piezotolerans WP3, c... 45 0.031 CP000302_2178(CP000302|pid:none) Shewanella denitrificans OS217,... 44 0.040 AP008229_2871(AP008229|pid:none) Xanthomonas oryzae pv. oryzae M... 44 0.040 CP000774_714(CP000774|pid:none) Parvibaculum lavamentivorans DS-... 44 0.040 CP001108_1354(CP001108|pid:none) Prosthecochloris aestuarii DSM ... 44 0.040 U88182_2(U88182|pid:none) Caenorhabditis elegans cosmid C53C11, ... 44 0.053 CP000301_1881(CP000301|pid:none) Rhodopseudomonas palustris BisB... 44 0.053 T22186(T22186) hypothetical protein F44F4.4 - Caenorhabditis ele... 44 0.053 CP000781_318(CP000781|pid:none) Xanthobacter autotrophicus Py2, ... 44 0.053 T25657(T25657)hypothetical protein C53C11.3 - Caenorhabditis ele... 44 0.053 AB235901_1(AB235901|pid:none) Mus musculus mRNA for RNDEu-2, com... 44 0.069 CR954247_359(CR954247|pid:none) Pseudoalteromonas haloplanktis s... 44 0.069 AM747721_2838(AM747721|pid:none) Burkholderia cenocepacia J2315 ... 44 0.069 AK173152_1(AK173152|pid:none) Mus musculus mRNA for mKIAA1337 pr... 44 0.069 CP001157_2782(CP001157|pid:none) Azotobacter vinelandii DJ, comp... 44 0.069 AE017226_2685(AE017226|pid:none) Treponema denticola ATCC 35405,... 44 0.069 CP001392_931(CP001392|pid:none) Diaphorobacter sp. TPSY, complet... 44 0.069 CP001349_3978(CP001349|pid:none) Methylobacterium nodulans ORS 2... 44 0.069 CP000283_3314(CP000283|pid:none) Rhodopseudomonas palustris BisB... 43 0.090 CP000519_50(CP000519|pid:none) Mycobacterium sp. KMS plasmid pMK... 43 0.090 CP001074_3550(CP001074|pid:none) Rhizobium etli CIAT 652, comple... 43 0.090 BA000032_471(BA000032|pid:none) Vibrio parahaemolyticus RIMD 221... 43 0.090 CP000615_493(CP000615|pid:none) Burkholderia vietnamiensis G4 ch... 43 0.090 CP000091_866(CP000091|pid:none) Ralstonia eutropha JMP134 chromo... 43 0.090 CP001504_316(CP001504|pid:none) Burkholderia glumae BGR1 chromos... 43 0.090 CP000048_242(CP000048|pid:none) Borrelia hermsii DAH, complete g... 43 0.12 AL646053_1114(AL646053|pid:none) Ralstonia solanacearum GMI1000 ... 43 0.12 CP000969_1501(CP000969|pid:none) Thermotoga sp. RQ2, complete ge... 43 0.12 CP000738_3359(CP000738|pid:none) Sinorhizobium medicae WSM419, c... 43 0.12 EU016666_2(EU016666|pid:none) Uncultured marine microorganism HF... 43 0.12 CP000859_610(CP000859|pid:none) Desulfococcus oleovorans Hxd3, c... 42 0.15 GM955849_1(GM955849|pid:none) Sequence 2803 from Patent WO200814... 42 0.15 CP001013_3691(CP001013|pid:none) Leptothrix cholodnii SP-6, comp... 42 0.15 CP001029_4094(CP001029|pid:none) Methylobacterium populi BJ001, ... 42 0.15 BX950851_3422(BX950851|pid:none) Erwinia carotovora subsp. atros... 42 0.15 CP000353_1241(CP000353|pid:none) Ralstonia metallidurans CH34 me... 42 0.15 CU234118_5850(CU234118|pid:none) Bradyrhizobium sp. ORS278,compl... 42 0.20 BX640447_98(BX640447|pid:none) Bordetella bronchiseptica strain ... 42 0.20 AP009384_2667(AP009384|pid:none) Azorhizobium caulinodans ORS 57... 42 0.20 T21213(T21213;T27817) hypothetical protein ZK270.1 - Caenorhabdi... 42 0.20 CP001133_1234(CP001133|pid:none) Vibrio fischeri MJ11 chromosome... 42 0.20 CP001510_4446(CP001510|pid:none) Methylobacterium extorquens AM1... 42 0.20 GM955871_1(GM955871|pid:none) Sequence 2825 from Patent WO200814... 42 0.20 CP000943_1278(CP000943|pid:none) Methylobacterium sp. 4-46, comp... 42 0.20 CP000863_2505(CP000863|pid:none) Acinetobacter baumannii ACICU, ... 42 0.26 CP000152_22(CP000152|pid:none) Burkholderia sp. 383 chromosome 2... 42 0.26 CP000302_1715(CP000302|pid:none) Shewanella denitrificans OS217,... 42 0.26 AP009386_1949(AP009386|pid:none) Burkholderia multivorans ATCC 1... 42 0.26 CU468230_1388(CU468230|pid:none) Acinetobacter baumannii str. SD... 42 0.26 AP008230_2068(AP008230|pid:none) Desulfitobacterium hafniense Y5... 42 0.26 CP000503_4016(CP000503|pid:none) Shewanella sp. W3-18-1, complet... 41 0.34 CP000628_2685(CP000628|pid:none) Agrobacterium radiobacter K84 c... 41 0.34 AE009439_1008(AE009439|pid:none) Methanopyrus kandleri AV19, com... 41 0.34 AY596294_57(AY596294|pid:none) Haloarcula marismortui ATCC 43049... 41 0.34 AM260479_1730(AM260479|pid:none) Ralstonia eutropha H16 chromoso... 41 0.34 CP001172_1102(CP001172|pid:none) Acinetobacter baumannii AB307-0... 41 0.45 CP000379_30(CP000379|pid:none) Burkholderia cenocepacia AU 1054 ... 41 0.45 CP000679_228(CP000679|pid:none) Caldicellulosiruptor saccharolyt... 41 0.45 AM477086_1(AM477086|pid:none) Vitis vinifera contig VV78X109905.... 41 0.45 AP007255_1875(AP007255|pid:none) Magnetospirillum magneticum AMB... 41 0.45 (P18502) RecName: Full=Protein patched; AltName: Full=Hedgehog r... 41 0.45 CP001389_62(CP001389|pid:none) Rhizobium sp. NGR234, complete ge... 41 0.45 CP000153_1277(CP000153|pid:none) Sulfurimonas denitrificans DSM ... 40 0.58 AM167904_325(AM167904|pid:none) Bordetella avium 197N complete g... 40 0.58 CP000152_295(CP000152|pid:none) Burkholderia sp. 383 chromosome ... 40 0.58 FM954973_1116(FM954973|pid:none) Vibrio splendidus LGP32 chromos... 40 0.58 CP000394_1270(CP000394|pid:none) Granulibacter bethesdensis CGDN... 40 0.58 AM286690_2471(AM286690|pid:none) Alcanivorax borkumensis SK2, co... 40 0.58 CP000230_882(CP000230|pid:none) Rhodospirillum rubrum ATCC 11170... 40 0.58 CP000949_2924(CP000949|pid:none) Pseudomonas putida W619, comple... 40 0.58 CT573326_2127(CT573326|pid:none) Pseudomonas entomophila str. L4... 40 0.58 CP000447_2205(CP000447|pid:none) Shewanella frigidimarina NCIMB ... 40 0.58 CP000103_1716(CP000103|pid:none) Nitrosospira multiformis ATCC 2... 40 0.76 CP000884_5118(CP000884|pid:none) Delftia acidovorans SPH-1, comp... 40 0.76 AE016796_499(AE016796|pid:none) Vibrio vulnificus CMCP6 chromoso... 40 0.76 CP000485_2028(CP000485|pid:none) Bacillus thuringiensis str. Al ... 40 0.76 BX640438_102(BX640438|pid:none) Bordetella bronchiseptica strain... 40 0.76 CP001185_1814(CP001185|pid:none) Thermosipho africanus TCF52B, c... 40 0.76 AL111168_25(AL111168|pid:none) Campylobacter jejuni subsp. jejun... 40 0.76 CP001186_2210(CP001186|pid:none) Bacillus cereus G9842, complete... 40 0.76 BA000045_4028(BA000045|pid:none) Gloeobacter violaceus PCC 7421 ... 40 0.76 CP001407_2313(CP001407|pid:none) Bacillus cereus 03BB102, comple... 40 0.76 BX640424_108(BX640424|pid:none) Bordetella parapertussis strain ... 40 0.76 CT573213_412(CT573213|pid:none) Frankia alni str. ACN14A chromos... 40 0.76 CP000744_1613(CP000744|pid:none) Pseudomonas aeruginosa PA7, com... 40 0.76 CP000571_3249(CP000571|pid:none) Burkholderia pseudomallei 668 c... 40 0.99 AM746676_8263(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 40 0.99 CP000525_1095(CP000525|pid:none) Burkholderia mallei SAVP1 chrom... 40 0.99 CP000227_2230(CP000227|pid:none) Bacillus cereus Q1, complete ge... 40 0.99 AM236080_3777(AM236080|pid:none) Rhizobium leguminosarum bv. vic... 40 0.99 CP000011_2002(CP000011|pid:none) Burkholderia mallei ATCC 23344 ... 40 0.99 CP000125_1477(CP000125|pid:none) Burkholderia pseudomallei 1710b... 40 0.99 AM902716_3273(AM902716|pid:none) Bordetella petrii strain DSM 12... 40 0.99 CP000916_1287(CP000916|pid:none) Thermotoga neapolitana DSM 4359... 39 1.3 CP000821_2423(CP000821|pid:none) Shewanella sediminis HAW-EB3, c... 39 1.3 AE017355_2144(AE017355|pid:none) Bacillus thuringiensis serovar ... 39 1.3 CP000473_4099(CP000473|pid:none) Solibacter usitatus Ellin6076, ... 39 1.3 CP000884_4745(CP000884|pid:none) Delftia acidovorans SPH-1, comp... 39 1.3 CP001103_1069(CP001103|pid:none) Alteromonas macleodii 'Deep eco... 39 1.3 CP000926_2464(CP000926|pid:none) Pseudomonas putida GB-1, comple... 39 1.3 CP000076_3194(CP000076|pid:none) Pseudomonas fluorescens Pf-5, c... 39 1.3 CP000702_1465(CP000702|pid:none) Thermotoga petrophila RKU-1, co... 39 1.3 CP000662_617(CP000662|pid:none) Rhodobacter sphaeroides ATCC 170... 39 1.3 CP000680_2165(CP000680|pid:none) Pseudomonas mendocina ymp, comp... 39 1.3 AY524182_1(AY524182|pid:none) Ornithodoros moubata NPC1 precurso... 39 1.3 CP000958_1165(CP000958|pid:none) Burkholderia cenocepacia MC0-3 ... 39 1.7 AE016879_2212(AE016879|pid:none) Bacillus anthracis str. Ames, c... 39 1.7 CP000269_1565(CP000269|pid:none) Janthinobacterium sp. Marseille... 39 1.7 AE004091_2495(AE004091|pid:none) Pseudomonas aeruginosa PAO1, co... 39 1.7 CP000613_3665(CP000613|pid:none) Rhodospirillum centenum SW, com... 39 1.7 CP000148_2787(CP000148|pid:none) Geobacter metallireducens GS-15... 39 1.7 CR378677_288(CR378677|pid:none) Photobacterium profundum SS9 chr... 39 1.7 CP000075_2967(CP000075|pid:none) Pseudomonas syringae pv. syring... 39 1.7 CP001053_2947(CP001053|pid:none) Burkholderia phytofirmans PsJN ... 39 1.7 CP000085_2335(CP000085|pid:none) Burkholderia thailandensis E264... 39 1.7 CP001635_2526(CP001635|pid:none) Variovorax paradoxus S110 chrom... 39 1.7 CP000383_1481(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334... 39 2.2 AL111168_970(AL111168|pid:none) Campylobacter jejuni subsp. jeju... 39 2.2 CP000089_3797(CP000089|pid:none) Dechloromonas aromatica RCB, co... 39 2.2 CP001184_433(CP001184|pid:none) Ureaplasma urealyticum serovar 1... 39 2.2 BA000012_2531(BA000012|pid:none) Mesorhizobium loti MAFF303099 D... 39 2.2 AP008957_1084(AP008957|pid:none) Rhodococcus erythropolis PR4 DN... 39 2.2 CP000656_454(CP000656|pid:none) Mycobacterium gilvum PYR-GCK, co... 39 2.2 CP000025_1138(CP000025|pid:none) Campylobacter jejuni RM1221, co... 39 2.2 CP000142_2230(CP000142|pid:none) Pelobacter carbinolicus DSM 238... 39 2.2 AJ938182_2425(AJ938182|pid:none) Staphylococcus aureus RF122 com... 38 2.9 CP000253_2714(CP000253|pid:none) Staphylococcus aureus subsp. au... 38 2.9 CP001358_2114(CP001358|pid:none) Desulfovibrio desulfuricans sub... 38 2.9 CP000490_110(CP000490|pid:none) Paracoccus denitrificans PD1222 ... 38 2.9 CP000613_180(CP000613|pid:none) Rhodospirillum centenum SW, comp... 38 2.9 CP000255_2401(CP000255|pid:none) Staphylococcus aureus subsp. au... 38 2.9 AE017340_62(AE017340|pid:none) Idiomarina loihiensis L2TR, compl... 38 2.9 CP000703_2537(CP000703|pid:none) Staphylococcus aureus subsp. au... 38 3.8 AB219524_2(AB219524|pid:none) Pseudomonas aeruginosa MexPQ-OpmE ... 38 3.8 CP000025_23(CP000025|pid:none) Campylobacter jejuni RM1221, comp... 38 3.8 T20370(T20370;T22129)hypothetical protein F43D9.1 - Caenorhabdit... 38 3.8 CP000712_2275(CP000712|pid:none) Pseudomonas putida F1, complete... 38 3.8 CP000931_2883(CP000931|pid:none) Shewanella halifaxensis HAW-EB4... 38 3.8 AE004091_3522(AE004091|pid:none) Pseudomonas aeruginosa PAO1, co... 38 3.8 CR378680_47(CR378680|pid:none) Photobacterium profundum SS9 chro... 38 3.8 FM242711_2395(FM242711|pid:none) Listeria monocytogenes Clip8145... 38 3.8 CU458896_4495(CU458896|pid:none) Mycobacterium abscessus chromos... 38 3.8 CP000271_2941(CP000271|pid:none) Burkholderia xenovorans LB400 c... 38 3.8 CP001176_1218(CP001176|pid:none) Bacillus cereus B4264, complete... 37 4.9 AM263198_2412(AM263198|pid:none) Listeria welshimeri serovar 6b ... 37 4.9 AG1382(AG1382) transport protein homolog lmo2463 [imported] - Li... 37 4.9 CP000075_2281(CP000075|pid:none) Pseudomonas syringae pv. syring... 37 4.9 CP001252_1159(CP001252|pid:none) Shewanella baltica OS223, compl... 37 4.9 CP000563_3125(CP000563|pid:none) Shewanella baltica OS155, compl... 37 4.9 CP001175_132(CP001175|pid:none) Listeria monocytogenes HCC23, co... 37 4.9 CP000884_5722(CP000884|pid:none) Delftia acidovorans SPH-1, comp... 37 4.9 CP000109_1855(CP000109|pid:none) Thiomicrospira crunogena XCL-2,... 37 4.9 CP000378_712(CP000378|pid:none) Burkholderia cenocepacia AU 1054... 37 4.9 CP000438_1488(CP000438|pid:none) Pseudomonas aeruginosa UCBPP-PA... 37 4.9 CP000753_3137(CP000753|pid:none) Shewanella baltica OS185, compl... 37 4.9 AE014299_3398(AE014299|pid:none) Shewanella oneidensis MR-1, com... 37 4.9 CP001053_2905(CP001053|pid:none) Burkholderia phytofirmans PsJN ... 37 4.9 CP000092_364(CP000092|pid:none) Ralstonia eutropha JMP134 megapl... 37 4.9 CP000851_2797(CP000851|pid:none) Shewanella pealeana ATCC 700345... 37 4.9 EU016651_32(EU016651|pid:none) Uncultured marine microorganism H... 37 4.9 AE016853_2542(AE016853|pid:none) Pseudomonas syringae pv. tomato... 37 6.4 CR931997_148(CR931997|pid:none) Corynebacterium jeikeium K411 co... 37 6.4 CT573074_117(CT573074|pid:none) Kuenenia stuttgartiensis genome ... 37 6.4 AM181176_3142(AM181176|pid:none) Pseudomonas fluorescens SBW25 c... 37 6.4 AP006725_813(AP006725|pid:none) Klebsiella pneumoniae NTUH-K2044... 37 6.4 AM167904_2458(AM167904|pid:none) Bordetella avium 197N complete ... 37 6.4 AE017340_434(AE017340|pid:none) Idiomarina loihiensis L2TR, comp... 37 6.4 AF159510_2(AF159510|pid:none) Brevibacterium flavum carotenoid b... 37 6.4 CP001111_3605(CP001111|pid:none) Stenotrophomonas maltophilia R5... 37 6.4 CP000503_1211(CP000503|pid:none) Shewanella sp. W3-18-1, complet... 37 6.4 CP000721_2820(CP000721|pid:none) Clostridium beijerinckii NCIMB ... 37 6.4 CP001322_4232(CP001322|pid:none) Desulfatibacillum alkenivorans ... 37 6.4 AL592166_14(AL592166|pid:none) Human DNA sequence from clone RP1... 37 6.4 AY596297_2979(AY596297|pid:none) Haloarcula marismortui ATCC 430... 37 6.4 CP000388_4091(CP000388|pid:none) Pseudoalteromonas atlantica T6c... 37 8.4 (Q7N3E2) RecName: Full=Multidrug resistance protein mdtB; AltNam... 37 8.4 CU695240_624(CU695240|pid:none) Ralstonia solanacearum strain Mo... 37 8.4 AM747720_1078(AM747720|pid:none) Burkholderia cenocepacia J2315 ... 37 8.4
>AF202725_1(AF202725|pid:none) Dictyostelium discoideum NPC1 protein mRNA, complete cds. &AF202726_1(AF202726|pid:none) Length = 1342
Score = 783 bits (2023), Expect = 0.0 Identities = 406/866 (46%), Positives = 544/866 (62%), Gaps = 7/866 (0%) Frame = +3
Query: 147 QSPYPYNTTLGCSMYGVSSSFVEAKDFPPLNNTEIAPNTCQLTHPEYSIESCCNYNQTLI 326 Q P+PYNTT GCSM G+++S++E+ +PP +N +AP TCQ +HPEYS SCC QTL+ Sbjct: 28 QGPFPYNTTEGCSMNGLNASYIESGLYPPYHNQILAPGTCQYSHPEYSETSCCTNGQTLV 87
Query: 327 LQTNMLVAGGIFGRCSSCMVNLYNLWCASSCSPYQKSFMVPTKVDNKTDQIISIDFVLHP 506 L +NM++ +F RC +C+ N+++LWCASSCSPYQ+SFMVPT +D+KT QI+S+DFV+HP Sbjct: 88 LLSNMVMGSAVFARCPACLFNVWDLWCASSCSPYQQSFMVPTSIDSKTGQILSVDFVIHP 147
Query: 507 DFANGLYNSCRDVHANGAQPFGVMFPTAQLFFTGVFSAVNPTFKELNWVFNNEGYNDAIV 686 D+A GLYNSC V+++GA PFG +F T Q FF+G+F A+NP F +NWVFN GY Sbjct: 148 DYAWGLYNSCSGVNSDGAPPFGTIFHTPQDFFSGIF-ALNPAFS-INWVFNETGYISPTA 205
Query: 687 PCSEGCSCDQCRDACLPPPSYKDIGLLNDTIIQTHLLI-EVPHLTXXXXXXXXXXXXXXX 863 PC+E CSCDQC DAC PPP+ +IGL N+++ QT+L E+P L+ Sbjct: 206 PCAESCSCDQCGDACGPPPTVGEIGLFNNSLPQTYLFNHEIPFLSVWMIWTFIMFTLVLT 265
Query: 864 XXXXXXXXXKYSSKIRYFXGKKFKTVMMIILGILFICTVLIPFVTTHQMIDGKTASCMWK 1043 +++F K K + ++L I FI +LIPF++ + +SC WK Sbjct: 266 YGTSMGLVL--FGNVKFFDSTKVKVIASLVLSISFISAILIPFISGKVPLHD--SSCQWK 321
Query: 1044 LDDGKEWNCSFAMGVSIYIMITLLLLSIVILACIIVDKTASNXXXXXXXXXXXXXXXQQ- 1220 + + WNCS A+GV IY +IT + L ++ + I++ SN Sbjct: 322 MPSDQLWNCSLALGVGIYELITFIFLFVISIVIIVLYHIGSNNRPIPGSSSNASVVYDAL 381
Query: 1221 VXXXXXXXXXXXXXXXXXXXXXXXXIFQKVFYWYGINITKRPIIVLICCLLFTXXXXXXX 1400 + I Q+ FYWYG + +P+IV++ C++ T Sbjct: 382 ISSNSSNNDNSNSNNNEQQQQQPSTIIQRFFYWYGHKVASKPLIVILICIIITAGLGIGI 441
Query: 1401 XSLEIETDPVKLWVSPDSRSAIEKQYFDXHFGXXXXGPFYRVEQLILIPK-QKNLSTIFN 1577 LEIE DPVKLWV+PDSR+A++K YFD +FG PFYRVEQ+I+ PK Q T+ Sbjct: 442 IKLEIEQDPVKLWVAPDSRAALDKTYFDNNFG-----PFYRVEQIIITPKNQTKYPTVIE 496
Query: 1578 YDLFKSLIDIETQLMKNTSVKLNDGSNRIITLDQLCFEPTKRGCLVESITGIFQRDQNKL 1757 YDL L +IE LM + + +ITLD LCF+PTKRGCL+ES +G++QR+ +KL Sbjct: 497 YDLLLELFEIELSLMSLEA----EYEGELITLDSLCFKPTKRGCLIESTSGLWQRNISKL 552
Query: 1758 N--QQKDNVIGWFEQCKSQLLSPECMDSTGVPVNPKIVLGGW-NDNSTLAKAFVTTFLLN 1928 N Q ++ V+ ++E C+S LL P+CMDS G PV P++VLGGW N+NS+ A AFV TFLLN Sbjct: 553 NYTQSEEGVLTYYENCQSSLLQPDCMDSVGAPVQPRVVLGGWENNNSSAASAFVVTFLLN 612
Query: 1929 NPDSMIDRSMMWEQVWLNKIQEISNDPSCPFEISFNAQRSVQDELAREGNADIPTIIVSY 2108 NP M++ +M WEQVWL+ I I+ F+I+++A+RSVQDEL+REGNADIPTI++SY Sbjct: 613 NPTDMVNTAMAWEQVWLDHISAIAATSEI-FDITYSAERSVQDELSREGNADIPTILISY 671
Query: 2109 FVMFLYISLSLGSYYXXXXXXXXXXXXXXXALGLXXXXXXXXXXXXXXXXXPILRIKATL 2288 FVMF Y+SLSLGSYY ALG + +KATL Sbjct: 672 FVMFFYVSLSLGSYYPFPTRFLSLFVRSRFALGFCGIIIVAASIVISVGVCSMANLKATL 731
Query: 2289 IISEVIPFLVLAIGVDNIFILVNTFESLHVAXXXXXXXXXGFNQNHHQMPTPEESFARTL 2468 IISEVIPFLVLAIGVDNIFI+VNTFESLHV + +PT E+S ARTL Sbjct: 732 IISEVIPFLVLAIGVDNIFIIVNTFESLHVVRYDP-------HTRAAILPTSEDSLARTL 784
Query: 2469 AKVGPXXXXXXXXXXXXXXXXXXTKMPAVKAFSFYASIAVFFDFLLQISAFACLLVLDTK 2648 AKVGP TKMPAV+AFS+YA++A+F DFLLQ+SAF+ LLVLD+K Sbjct: 785 AKVGPSIALASLSESLAFLLGSLTKMPAVQAFSYYAALAIFVDFLLQVSAFSALLVLDSK 844
Query: 2649 RLQSRRVDCLPCLSL-NGDNSDLEDD 2723 R SRR+DCLPC++L +GDNSD+EDD Sbjct: 845 RASSRRIDCLPCIALEDGDNSDMEDD 870
Score = 266 bits (681), Expect(3) = e-133 Identities = 130/201 (64%), Positives = 159/201 (79%) Frame = +1
Query: 3685 TSYYLADHSDAQVFTYSIFYCYFEAYLTIKQVALKGILLALGSVFFVSLAILMNPLVSIL 3864 T+YYLAD+SD V YSI Y YF+ YLTIK VA+ ILLALG VF V L +L+NPLVS L Sbjct: 1134 TAYYLADNSDLDVEVYSIIYVYFDQYLTIKSVAIMDILLALGGVFIVCLILLLNPLVSFL 1193
Query: 3865 VVLCVGMTVVDLLAVMTLWDIFLNAISVVNLIMAVGISIEFCVHIASTFIRSPKHYSRDE 4044 VV+ VGM VDLL +M LW+I LNA+SVVN++MA+GI IEFCVHIASTFI +PKH+SRD+ Sbjct: 1194 VVISVGMICVDLLGIMALWNISLNAVSVVNVVMAIGIGIEFCVHIASTFINAPKHFSRDQ 1253
Query: 4045 KVKFAISEMGANIFSGIFITKLLGCVVLAFSKSEIFIIYYFKMYISICLLAAVHGLVLLP 4224 K K+A++EMG++I SGIFITKLLG VVL FS SEIF +YYF+MY+SI L +HGLV LP Sbjct: 1254 KAKYAVTEMGSSIISGIFITKLLGVVVLGFSTSEIFTVYYFRMYLSIVFLGGLHGLVFLP 1313
Query: 4225 VLLSIFGTNKFSFEKFLTFKK 4287 VLLS+FGT+ ++ KK Sbjct: 1314 VLLSLFGTDTLQLDRLCKSKK 1334
Score = 167 bits (424), Expect(3) = e-133 Identities = 80/152 (52%), Positives = 107/152 (70%), Gaps = 2/152 (1%) Frame = +3
Query: 3231 VVKGNYDFSIPSIQNQFCTVGGCNNNSVINTFDNAPFISPGISSWLDDMLRWSNTVG-CC 3407 V+KG+Y+++ QN+ CT+GGC+ +S++N F+NAPFI+ GISSWLDD + ++ G CC Sbjct: 983 VIKGDYNYTDFESQNKLCTMGGCDKDSIVNVFNNAPFINKGISSWLDDYISFAQAQGSCC 1042
Query: 3408 TAFDNGTYC-NSDEPGCDQQCFPLEKSGRPDPSLFKKYLPAFLNFTNTDQCPLAGLAYTG 3584 + NG+ C N +P C CF GRPDP F +YLP FLN +NT CPLAGLAYT Sbjct: 1043 LKYPNGSICYNGADPSC-APCFSNNAQGRPDPQSFIQYLPFFLNVSNTASCPLAGLAYTS 1101
Query: 3585 DVKFNSDGSIAATRFDAYHTTLRTQNDFINAL 3680 D +G+I A+RFD YHTTLRTQ+D+INA+ Sbjct: 1102 DAHI-VNGTIVASRFDGYHTTLRTQDDYINAV 1132
Score = 90.1 bits (222), Expect(3) = e-133 Identities = 42/75 (56%), Positives = 50/75 (66%) Frame = +2
Query: 3014 LFTKYYAPFLVHPISKXXXXXXXXXXXXXSINYAYQIPIGLDQKVALPRNSYLQAYFTNM 3193 +F K+YAPFL+HPI+K IN+A+Q+ IGLDQ+VALP NSYLQ YF NM Sbjct: 911 VFKKFYAPFLLHPITKMLVIIFFVGLLLTGINFAFQVSIGLDQRVALPSNSYLQGYFNNM 970
Query: 3194 NQFLEVGPPMYICCK 3238 LEVGPP YI K Sbjct: 971 ANLLEVGPPFYIVIK 985
Lambda K H 0.318 0.134 0.401
Gapped Lambda K H 0.267 0.0410 0.140
Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3236559 Number of Hits to DB: 5,945,238,143 Number of extensions: 113465314 Number of successful extensions: 287773 Number of sequences better than 10.0: 347 Number of HSP's gapped: 287036 Number of HSP's successfully gapped: 549 Length of query: 1454 Length of database: 1,051,180,864 Length adjustment: 142 Effective length of query: 1312 Effective length of database: 591,589,486 Effective search space: 776165405632 Effective search space used: 776165405632 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 32 (16.9 bits)
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
1 |
VF (FL, S) |
1 |
AH (FL, L) |
0 |
AF (FL, S) |
1 |
SL (DIR, L) |
1 |
SS (DIR, S) |
2 |
SH (FL, L) |
5 |
SF (FL, S) |
0 |
CH (FL, L) |
9 |
CF (FL, S) |
2 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |