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Dicty_cDB
Contig List | Clone List | cDNA Library List
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U01805-1
Contig ID Contig-U01805-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U01805-1 (Contig-U01805-1Q) /CSM_Contig/Contig-U01805-1Q.Seq.d
ACATACTTATATAAAAGTACATATAAGTAAATTTATTATATGTTAAAACA
TATTATTTATAAATTTTATTTATAAATTTTAAAAATTAAACAATTAATAA
AAAAAATTGTTTATTTACATTCTACACACACACAAATACAAATAAATTCG
CACACAAAAAAAAAAACACAGTATCCACAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA
Gap no gap
Contig length 220
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 4322005
End point 4322225
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U01805
List of clone(s) 

est1=SSH663F,1,221
Translated Amino Acid sequence 
tylykstyk*iyymlkhiiykfyl*ILKIKQLIKKIVYLHSTHTQIQINSHTKKKTQYPQ
KKKKKKKKKKKKK
Translated Amino Acid sequence (All Frames) 
Frame A:
tylykstyk*iyymlkhiiykfyl*ILKIKQLIKKIVYLHSTHTQIQINSHTKKKTQYPQ
KKKKKKKKKKKKK


Frame B:
htyikvhiskfiic*nilfinfiykf*klnn**kklfiyilhthkyk*irtqkkkhsihk
kkkkkkkkkkkkk


Frame C:
ili*kyi*vnllyvktyyl*ilfinfkn*tinkknclftfythtntnkfahkkkntvstk
kkkkkkkkkkkk
own update 2004. 6. 7
Homology vs CSM-cDNA 
Query= Contig-U01805-1 (Contig-U01805-1Q)
/CSM_Contig/Contig-U01805-1Q.Seq.d
         (220 letters)

Database: CSM
           8361 sequences; 7,895,291 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U01805-1 (Contig-U01805-1Q) /CSM_Contig/Conti...    98  7e-21
Contig-U10913-1 (Contig-U10913-1Q) /CSM_Contig/Conti...    38  0.005
Contig-U06925-1 (Contig-U06925-1Q) /CSM_Contig/Conti...    36  0.021
Contig-U11052-1 (Contig-U11052-1Q) /CSM_Contig/Conti...    34  0.081
Contig-U10997-1 (Contig-U10997-1Q) /CSM_Contig/Conti...    32  0.32
Contig-U14740-1 (Contig-U14740-1Q) /CSM_Contig/Conti...    30  1.3
Contig-U12145-1 (Contig-U12145-1Q) /CSM_Contig/Conti...    30  1.3
Contig-U11858-1 (Contig-U11858-1Q) /CSM_Contig/Conti...    30  1.3
Contig-U11460-1 (Contig-U11460-1Q) /CSM_Contig/Conti...    30  1.3
Contig-U10807-1 (Contig-U10807-1Q) /CSM_Contig/Conti...    30  1.3

>Contig-U01805-1 (Contig-U01805-1Q) /CSM_Contig/Contig-U01805-1Q.Seq.d
          Length = 220

 Score = 97.6 bits (49), Expect = 7e-21
 Identities = 49/49 (100%)
 Strand = Plus / Plus

                                                            
Query: 107 ttgtttatttacattctacacacacacaaatacaaataaattcgcacac 155
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 ttgtttatttacattctacacacacacaaatacaaataaattcgcacac 155


 Score = 63.9 bits (32), Expect = 9e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                          
Query: 1  acatacttatataaaagtacatataagtaaat 32
          ||||||||||||||||||||||||||||||||
Sbjct: 1  acatacttatataaaagtacatataagtaaat 32


>Contig-U10913-1 (Contig-U10913-1Q) /CSM_Contig/Contig-U10913-1Q.Seq.d
          Length = 1285

 Score = 38.2 bits (19), Expect = 0.005
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 125 cacacacacaaatacaaataaat 147
           |||||||||||||||| ||||||
Sbjct: 44  cacacacacaaatacatataaat 66


>Contig-U06925-1 (Contig-U06925-1Q) /CSM_Contig/Contig-U06925-1Q.Seq.d
          Length = 368

 Score = 36.2 bits (18), Expect = 0.021
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 123 tacacacacacaaataca 140
           ||||||||||||||||||
Sbjct: 201 tacacacacacaaataca 218


  Database: CSM
    Posted date:  Jun 7, 2004  8:33 AM
  Number of letters in database: 7,895,291
  Number of sequences in database:  8361
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1613
Number of Sequences: 8361
Number of extensions: 1613
Number of successful extensions: 511
Number of sequences better than 10.0: 57
length of query: 220
length of database: 7,895,291
effective HSP length: 15
effective length of query: 205
effective length of database: 7,769,876
effective search space: 1592824580
effective search space used: 1592824580
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 5. 8
Homology vs DNA 
Query= Contig-U01805-1 (Contig-U01805-1Q) /CSM_Contig/Contig-U01805-1Q.Seq.d
         (220 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU073611) Dictyostelium discoideum slug cDNA, clone SSH663.       76   6e-10  1
(CU468254) Zebrafish DNA sequence from clone CH73-374J3 in l...    48   0.13   1
(CR974568) Mouse DNA sequence from clone RP23-39N20 on chrom...    48   0.13   1
(AL807823) Mouse DNA sequence from clone RP23-328E6 on chrom...    48   0.13   1
(AL731833) Mouse DNA sequence from clone RP23-72P19 on chrom...    48   0.13   1
(AC105611) Rattus norvegicus clone CH230-225K16, WORKING DRA...    48   0.13   1
(AC101533) Mus musculus clone RP23-191J14, LOW-PASS SEQUENCE...    48   0.13   1
(AC096416) Rattus norvegicus clone CH230-74F14, *** SEQUENCI...    48   0.13   1
(FP236684) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.13   1
(CU915569) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    48   0.13   1
(AC165566) Bos taurus clone CH240-161I3, WORKING DRAFT SEQUE...    48   0.13   1
(AC163068) Bos taurus clone CH240-124M18, WORKING DRAFT SEQU...    48   0.13   1
(BE569627) 601328276F1 NCI_CGAP_Mam6 Mus musculus cDNA clone...    48   0.13   1
(AL334409) Tetraodon nigroviridis genome survey sequence T7 ...    38   0.38   2
(CT485613) Mouse DNA sequence from clone RP23-140I12 on chro...    46   0.52   1
(CT009662) Mouse DNA sequence from clone CH29-511O15 on chro...    46   0.52   1
(BX530725) Mouse DNA sequence from clone RP23-49E16 on chrom...    46   0.52   1
(AC167363) Mus musculus BAC clone RP23-73N16 from chromosome...    46   0.52   1
(AC161538) Mus musculus 6 BAC RP23-1D15 (Roswell Park Cancer...    46   0.52   1
(AC153632) Mus musculus 6 BAC RP23-450O1 (Roswell Park Cance...    46   0.52   1
(AC151994) Mus musculus BAC clone RP23-188B20 from 14, compl...    46   0.52   1
(AC125158) Mus musculus BAC clone RP24-391P1 from chromosome...    46   0.52   1
(AC124745) Mus musculus BAC clone RP23-236O12 from 14, compl...    46   0.52   1
(AC124632) Mus musculus chromosome 19, clone RP23-445I14, co...    46   0.52   1
(AC115640) Rattus norvegicus  BAC CH230-210B21 () complete s...    46   0.52   1
(AC099636) Mus musculus chromosome 19, clone RP24-149H13, co...    46   0.52   1
(AC196300) Pan troglodytes BAC clone CH251-385B7 from chromo...    46   0.52   1
(AL162591) Human DNA sequence from clone RP11-350G8 on chrom...    46   0.52   1
(AC073487) Homo sapiens 12 BAC RP11-762I7 (Roswell Park Canc...    46   0.52   1
(AC156619) Mus musculus chromosome 5 clone RP23-1J16 map 5, ...    46   0.52   1
(AC136247) Rattus norvegicus clone CH230-244I17, *** SEQUENC...    46   0.52   1
(AC135877) Rattus norvegicus clone CH230-92M12, WORKING DRAF...    46   0.52   1
(AC134077) Rattus norvegicus clone CH230-200P3, *** SEQUENCI...    46   0.52   1
(AC120915) Homo sapiens, WORKING DRAFT SEQUENCE, 2 ordered p...    46   0.52   1
(AC119007) Rattus norvegicus clone CH230-301P23, WORKING DRA...    46   0.52   1
(AC117294) Rattus norvegicus clone CH230-251M17, WORKING DRA...    46   0.52   1
(AC113685) Rattus norvegicus clone CH230-121M1, *** SEQUENCI...    46   0.52   1
(AC106372) Rattus norvegicus clone CH230-119G1, WORKING DRAF...    46   0.52   1
(AC098325) Rattus norvegicus clone CH230-1M6, *** SEQUENCING...    46   0.52   1
(AC094738) Rattus norvegicus clone CH230-5C5, WORKING DRAFT ...    46   0.52   1
(CU550672) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   0.52   1
(AC079476) Mus musculus clone RP23-140I12, WORKING DRAFT SEQ...    46   0.52   1
(AC073720) Mus musculus clone RP23-208E9, WORKING DRAFT SEQU...    46   0.52   1
(AK014593) Mus musculus 0 day neonate skin cDNA, RIKEN full-...    46   0.52   1
(AZ953573) 2M0218F21R Mouse 10kb plasmid UUGC2M library Mus ...    46   0.52   1
(ET968286) CHO_OF469xg04f1.ab1 CHO_OF Nicotiana tabacum geno...    46   0.52   1
(EF888701) Mus musculus C57BL/6N IST11853H4HMF1 gene trap em...    46   0.52   1
(EF888700) Mus musculus C57BL/6N IST11853H4BBF1 gene trap em...    46   0.52   1
(EF873919) Mus musculus C57BL/6N IST12087E10BBF1 gene trap e...    46   0.52   1
(AG426631) Mus musculus molossinus DNA, clone:MSMg01-300A11....    46   0.52   1
(DY267906) IC0AAA22DA01RM1 CitNFL Citrus clementina cDNA 5',...    46   0.52   1
(DY226703) ID0AAI9YB20RM1 ID0AEE Acyrthosiphon pisum cDNA cl...    46   0.52   1
(BY714043) Mus musculus 0 day neonate skin cDNA, RIKEN full-...    46   0.52   1
(CU207238) Zebrafish DNA sequence from clone CH211-221G5 in ...    44   2.1    1
(CT573233) Zebrafish DNA sequence from clone DKEY-191G9 in l...    44   2.1    1
(CR536604) Zebrafish DNA sequence from clone DKEY-57A22 in l...    44   2.1    1
(BX248325) Zebrafish DNA sequence from clone CH211-233I11 in...    44   2.1    1
(AL929020) Mouse DNA sequence from clone RP23-291L24 on chro...    44   2.1    1
(AL662887) Mouse DNA sequence from clone RP23-400P17 on chro...    44   2.1    1
(AC186278) Spermophilus tridecemlineatus clone VMRC20-243P12...    44   2.1    1
(AC164626) Mus musculus 6 BAC RP23-472D18 (Roswell Park Canc...    44   2.1    1
(AC163008) Mus musculus chromosome 15, clone RP23-105P11, co...    44   2.1    1
(AC157784) Mus musculus chromosome 18, clone RP24-163C18, co...    44   2.1    1
(AC154660) Mus musculus BAC clone RP24-271M20 from chromosom...    44   2.1    1
(AC153137) Mus musculus BAC clone RP23-471J16 from chromosom...    44   2.1    1
(AC125185) Mus musculus BAC clone RP23-301L11 from chromosom...    44   2.1    1
(AC124469) Mus musculus BAC clone RP24-172B22 from chromosom...    44   2.1    1
(AC124192) Mus musculus BAC clone RP23-275N17 from 19, compl...    44   2.1    1
(AC121977) Mus musculus BAC clone RP24-287A16 from chromosom...    44   2.1    1
(AC117810) Mus musculus chromosome 18, clone RP24-571D2, com...    44   2.1    1
(AC116380) Mus musculus chromosome 1, clone RP23-6F21, compl...    44   2.1    1
(AC102243) Mus musculus chromosome 18, clone RP24-141G8, com...    44   2.1    1
(AC101996) Mus musculus chromosome 15, clone RP24-441N7, com...    44   2.1    1
(AC090046) Mus musculus chromosome 6, clone RP23-82P24, comp...    44   2.1    1
(DJ468871) Method for analysing genome using microsatellite ...    44   2.1    1
(AC104810) Homo sapiens BAC clone RP11-641D2 from 4, complet...    44   2.1    1
(AC009878) Homo sapiens chromosome 15, clone RP11-345N11, co...    44   2.1    1
(AC161925) Mus musculus chromosome 18 clone RP23-59L5 map 18...    44   2.1    1
(AC161795) Mus musculus chromosome 18 clone RP23-121G22 map ...    44   2.1    1
(AC135089) Rattus norvegicus clone CH230-12P1, *** SEQUENCIN...    44   2.1    1
(AC134939) Rattus norvegicus clone CH230-375A21, WORKING DRA...    44   2.1    1
(AC134135) Rattus norvegicus clone CH230-71O16, WORKING DRAF...    44   2.1    1
(AC130143) Rattus norvegicus clone CH230-171A22, WORKING DRA...    44   2.1    1
(AC129417) Rattus norvegicus clone CH230-287M3, WORKING DRAF...    44   2.1    1
(AC123442) Rattus norvegicus clone CH230-396P13, *** SEQUENC...    44   2.1    1
(AC121407) Rattus norvegicus clone CH230-129H11, WORKING DRA...    44   2.1    1
(AC120762) Rattus norvegicus clone CH230-114F2, *** SEQUENCI...    44   2.1    1
(AC118817) Rattus norvegicus clone CH230-447P6, WORKING DRAF...    44   2.1    1
(AC112574) Rattus norvegicus clone CH230-245I10, *** SEQUENC...    44   2.1    1
(AC111658) Rattus norvegicus clone CH230-130F10, *** SEQUENC...    44   2.1    1
(AC103451) Rattus norvegicus clone CH230-175H14, *** SEQUENC...    44   2.1    1
(AC097989) Rattus norvegicus clone CH230-142J24, *** SEQUENC...    44   2.1    1
(FP236316) Human DNA sequence *** SEQUENCING IN PROGRESS ***...    44   2.1    1
(FP102226) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   2.1    1
(CU861909) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   2.1    1
(AC094532) Rattus norvegicus clone CH230-4L18, WORKING DRAFT...    44   2.1    1
(AC170782) Bos taurus clone CH240-237A12, WORKING DRAFT SEQU...    44   2.1    1
(AC023840) Homo sapiens chromosome 15 clone RP11-560A2 map 1...    44   2.1    1
(AC022902) Homo sapiens chromosome 4 clone RP11-641D2 map 4,...    44   2.1    1
(AK140953) Mus musculus 16 days embryo head cDNA, RIKEN full...    44   2.1    1
(EI703373) IGBR013O13TR BAC library from the recurrent gliob...    44   2.1    1
(CT327818) Sus scrofa genomic clone CH242-338A23, genomic su...    44   2.1    1
(CR166618) Reverse strand read from insert in 3'HPRT inserti...    44   2.1    1
(CT677754) Danio rerio EST, clone ZF_mu_201a13 5'.                 44   2.1    1
(AC106884) Homo sapiens BAC clone RP11-1366O24 from 4, compl...    30   3.9    2
(AC022672) Homo sapiens chromosome 4 clone RP11-684N3 map 4,...    30   3.9    2
(AC123597) Mus musculus chromosome 8, clone RP23-134A7, comp...    34   4.0    2
(AB031740) Homo sapiens PBII gene for salivary proline-rich ...    30   4.7    2
(CJ171776) Mus musculus 14.5 days embryo Rathke's pouches cD...    34   5.5    2
(BX486717) Homo sapiens mRNA; EST DKFZp686B03253_r1  (from c...    30   5.5    2
(CT027987) Zebrafish DNA sequence from clone CH211-247E2 in ...    42   8.2    1
(BX957244) Zebrafish DNA sequence from clone CH211-13C6 in l...    42   8.2    1
(BX936390) Zebrafish DNA sequence from clone DKEY-6E2 in lin...    42   8.2    1
(BX936384) Zebrafish DNA sequence from clone CH211-76M11 in ...    42   8.2    1
(BX936362) Zebrafish DNA sequence from clone DKEY-190J3 in l...    42   8.2    1
(BX649503) Zebrafish DNA sequence from clone DKEYP-90A8 in l...    42   8.2    1
(BX323042) Zebrafish DNA sequence from clone DKEYP-78G2 in l...    42   8.2    1
(BX001017) Zebrafish DNA sequence from clone RP71-15M4 in li...    42   8.2    1
(AL928556) Zebrafish DNA sequence from clone DKEY-63M7.            42   8.2    1
(BV512365) qzn50a08.g1 Clint Pan troglodytes verus STS genom...    42   8.2    1
(BV497708) S217P60761RA5.T0 Noemie Pan troglodytes troglodyt...    42   8.2    1
(BV468280) G591P606357RB1.T0 Clint Pan troglodytes verus STS...    42   8.2    1
(BV373834) S231P6546RE10.T0 BedlingtonTerrier Canis familiar...    42   8.2    1
(BV020984) S212P60226FA2.T0 CZECHII/Ei Mus musculus STS geno...    42   8.2    1
(BV004945) S208P6041FB12.T0 129S1/SvImJ Mus musculus STS gen...    42   8.2    1
(AB146978) Homo sapiens DNA, STS on chromosome 2, D2S1392i, ...    42   8.2    1
(AB135645) Homo sapiens DNA, STS on chromosome X, DXS0165i, ...    42   8.2    1
(AB135597) Homo sapiens DNA, STS on chromosome X, DXS0127i, ...    42   8.2    1
(AL928632) Mouse DNA sequence from clone RP23-303M15 on chro...    42   8.2    1
(AL844532) Mouse DNA sequence from clone RP23-221O14 on chro...    42   8.2    1
(AL611926) Mouse DNA sequence from clone RP23-28G13 on chrom...    42   8.2    1
(AL365334) Mouse DNA sequence from clone RP23-392F1 on chrom...    42   8.2    1
(AC169037) Mus musculus BAC clone RP23-85E20 from chromosome...    42   8.2    1
(AC166773) Mus musculus chromosome 7, clone RP24-303J15, com...    42   8.2    1
(AC165338) Mus musculus BAC clone RP24-456K15 from chromosom...    42   8.2    1
(AC161205) Mus musculus chromosome 7, clone RP23-53C15, comp...    42   8.2    1
(AC158138) Mus musculus chromosome 7, clone RP23-26C21, comp...    42   8.2    1
(AC157908) Mus musculus chromosome 18, clone RP24-286P2, com...    42   8.2    1
(AC157597) Mus musculus BAC clone RP23-231O9 from chromosome...    42   8.2    1
(AC156615) Mus musculus chromosome 3, clone RP23-1B20, compl...    42   8.2    1
(AC154787) Mus musculus BAC clone RP24-468J5 from chromosome...    42   8.2    1
(AC154244) Mus musculus BAC clone RP24-321P20 from 17, compl...    42   8.2    1
(AC147045) Mus musculus BAC clone RP23-100E5 from chromosome...    42   8.2    1
(AC140346) Mus musculus BAC clone RP24-260I8 from 16, comple...    42   8.2    1
(AC140186) Mus musculus BAC clone RP24-363G9 from chromosome...    42   8.2    1
(AC137855) Mus musculus chromosome 16, clone RP24-444E8, com...    42   8.2    1
(AC136518) Mus musculus BAC clone RP23-304K22 from chromosom...    42   8.2    1
(AC133210) Mus musculus chromosome UNK clone RP23-27L12, com...    42   8.2    1
(AC125191) Mus musculus BAC clone RP23-262C22 from 16, compl...    42   8.2    1
(AC125168) Mus musculus BAC clone RP24-449N2 from chromosome...    42   8.2    1
(AC121794) Mus musculus BAC clone RP23-413C3 from chromosome...    42   8.2    1
(AC120779) Mus musculus strain C57BL/6J clone rp23-194d11 ma...    42   8.2    1
(AC118632) Mus musculus chromosome 18, clone RP24-94D24, com...    42   8.2    1
(AC118208) Mus musculus chromosome 18, clone RP24-559H7, com...    42   8.2    1
(AC115883) Mus musculus chromosome 3, clone RP24-376N4, comp...    42   8.2    1
(AC115761) Mus musculus chromosome 7, clone RP23-62N10, comp...    42   8.2    1
(AC113542) Mus musculus chromosome 5, clone RP23-195A18, com...    42   8.2    1
(AC113092) Mus musculus chromosome 6, clone RP23-309N11, com...    42   8.2    1
(AC110374) Mus musculus BAC clone RP23-293P18 from 15, compl...    42   8.2    1
(AC110038) Mus musculus chromosome 1, clone RP23-258M15, com...    42   8.2    1
(AC105304) Mus musculus strain C57BL/6J clone rp23-71k5 map ...    42   8.2    1
(AC099414) Mus musculus BAC clone RP23-122C18 from 3, comple...    42   8.2    1
(AC094507) Rattus norvegicus 1 BAC CH230-4E15 (Children's Ho...    42   8.2    1
(AC087899) Mus musculus strain C57BL/6J chromosome 19 clone ...    42   8.2    1
(AC195067) Pan troglodytes BAC clone CH251-510L5 from chromo...    42   8.2    1
(AC190172) Pan troglodytes BAC clone CH251-533P11 from chrom...    42   8.2    1
(AC188993) Callithrix jacchus BAC clone CH259-55H12 from chr...    42   8.2    1
(AC188597) Pan troglodytes BAC clone CH251-572L20 from chrom...    42   8.2    1
(AC173833) Pan troglodytes chromosome X clone CH251-45A9 map...    42   8.2    1
(AY484941) Fucus spiralis microsatellite F90 sequence.             42   8.2    1
(AY299197) Schizolobium parahybum clone Sp6 microsatellite s...    42   8.2    1
(AM443874) Vitis vinifera contig VV78X089951.4, whole genome...    42   8.2    1
(AC174370) Medicago truncatula chromosome 8 clone mth2-50f20...    42   8.2    1
(DJ474133) Method for analysing genome using microsatellite ...    42   8.2    1
(DJ473820) Method for analysing genome using microsatellite ...    42   8.2    1
(DJ451524) Method for analysing genome using microsatellite ...    42   8.2    1
(AX344379) Sequence 226 from Patent WO0200926.                     42   8.2    1
(AY619206) Daphnia pulicaria clone WFms0000197 microsatellit...    42   8.2    1
(AM502238) Leishmania infantum chromosome 20.                      42   8.2    1
(AL008970) Plasmodium falciparum MAL3P4.                           42   8.2    1
(AL590782) Human DNA sequence from clone CTD-2524E3 on chrom...    42   8.2    1
(AL359759) Human DNA sequence from clone RP11-285F16 on chro...    42   8.2    1
(AL136363) Human DNA sequence from clone RP6-43L17 on chromo...    42   8.2    1
(AF241729) Homo sapiens chromosome X clone RP5-817K2 map p11...    42   8.2    1
(AF001905) Homo sapiens cosmids E079, B0920 and A8 from Xq25...    42   8.2    1
(AC105014) Homo sapiens chromosome 15, clone RP11-466P9, com...    42   8.2    1
(AC097720) Homo sapiens BAC clone RP11-1422N15 from 2, compl...    42   8.2    1
(AC084064) Homo sapiens chromosome 16 clone RP11-467I17, com...    42   8.2    1
(AC025593) Homo sapiens chromosome 7 clone RP11-18L16, compl...    42   8.2    1
(AC022212) Homo sapiens BAC clone RP11-708E9 from Xq23, comp...    42   8.2    1
(AC019046) Homo sapiens BAC clone RP11-71D23 from 2, complet...    42   8.2    1
(AC008265) Homo sapiens chromosome 7 clone RP11-256C24, comp...    42   8.2    1
(AC005667) Homo sapiens chromosome 17, clone hRPK.329_E_11, ...    42   8.2    1
(AC005206) Homo sapiens chromosome 17, clone hRPC.1108_L_11,...    42   8.2    1
(AC161322) Loxodonta africana clone VMRC15-546H14, WORKING D...    42   8.2    1
(AC157600) Mus musculus chromosome 16 clone RP23-143H15, WOR...    42   8.2    1
(AC142075) Rattus norvegicus clone CH230-140G17, WORKING DRA...    42   8.2    1
(AC140796) Mus musculus clone RP23-326L6, WORKING DRAFT SEQU...    42   8.2    1
(AC135711) Rattus norvegicus clone CH230-220O4, *** SEQUENCI...    42   8.2    1
(AC133251) Rattus norvegicus clone CH230-53M6, *** SEQUENCIN...    42   8.2    1
(AC132722) Rattus norvegicus clone CH230-26C2, WORKING DRAFT...    42   8.2    1
(AC131345) Rattus norvegicus clone CH230-5F10, WORKING DRAFT...    42   8.2    1
(AC131201) Rattus norvegicus clone CH230-367K5, WORKING DRAF...    42   8.2    1
(AC130746) Rattus norvegicus clone CH230-39M21, *** SEQUENCI...    42   8.2    1
(AC130068) Rattus norvegicus clone CH230-313L4, *** SEQUENCI...    42   8.2    1
(AC129392) Rattus norvegicus clone CH230-7J12, WORKING DRAFT...    42   8.2    1
(AC126969) Rattus norvegicus clone CH230-197P4, *** SEQUENCI...    42   8.2    1
(AC120633) Rattus norvegicus clone CH230-341O2, *** SEQUENCI...    42   8.2    1
(AC119517) Rattus norvegicus clone CH230-241O9, *** SEQUENCI...    42   8.2    1
(AC119478) Rattus norvegicus clone CH230-180D3, WORKING DRAF...    42   8.2    1
(AC119444) Rattus norvegicus clone CH230-325M19, *** SEQUENC...    42   8.2    1
(AC118324) Rattus norvegicus clone CH230-499K24, WORKING DRA...    42   8.2    1
(AC112744) Rattus norvegicus clone CH230-85L2, *** SEQUENCIN...    42   8.2    1
(AC112423) Rattus norvegicus clone CH230-29O21, WORKING DRAF...    42   8.2    1
(AC111752) Rattus norvegicus clone CH230-171K17, *** SEQUENC...    42   8.2    1
(AC111359) Rattus norvegicus clone CH230-91A10, *** SEQUENCI...    42   8.2    1
(AC110342) Rattus norvegicus clone CH230-43F8, *** SEQUENCIN...    42   8.2    1
(AC109751) Rattus norvegicus clone CH230-63G19, *** SEQUENCI...    42   8.2    1
(AC108954) Rattus norvegicus clone CH230-6E11, WORKING DRAFT...    42   8.2    1
(AC106343) Rattus norvegicus clone CH230-155K1, *** SEQUENCI...    42   8.2    1
(AC105796) Rattus norvegicus clone CH230-254O2, *** SEQUENCI...    42   8.2    1
(AC104559) Mus musculus chromosome 17 clone RP24-160C12 map ...    42   8.2    1
(AC103243) Rattus norvegicus clone CH230-63P16, *** SEQUENCI...    42   8.2    1
(AC100234) Mus musculus clone RP23-63L9, LOW-PASS SEQUENCE S...    42   8.2    1
(AC098757) Rattus norvegicus clone CH230-86J1, *** SEQUENCIN...    42   8.2    1
(AC098165) Rattus norvegicus clone CH230-92A14, WORKING DRAF...    42   8.2    1
(AC097208) Rattus norvegicus clone CH230-190M10, *** SEQUENC...    42   8.2    1
(AC097129) Rattus norvegicus clone CH230-200C21, WORKING DRA...    42   8.2    1
(AC097040) Rattus norvegicus clone CH230-66A9, WORKING DRAFT...    42   8.2    1
(AC096427) Rattus norvegicus clone CH230-153F21, WORKING DRA...    42   8.2    1
(AC096331) Rattus norvegicus clone CH230-82H22, WORKING DRAF...    42   8.2    1
(AC096153) Rattus norvegicus clone CH230-10H23, *** SEQUENCI...    42   8.2    1
(AC095863) Rattus norvegicus clone CH230-9N18, *** SEQUENCIN...    42   8.2    1
(FP236484) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   8.2    1
(CU984545) Brassica rapa subsp. pekinensis clone KBrB019J20,...    42   8.2    1
(CU855648) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   8.2    1
(CU693460) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   8.2    1
(CU607084) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   8.2    1
(CU571054) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   8.2    1
(CU469344) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   8.2    1
(AC094283) Rattus norvegicus clone CH230-3H3, WORKING DRAFT ...    42   8.2    1
(AC079435) Mus musculus strain C57BL6/J chromosome 11 clone ...    42   8.2    1
(AC074106) Mus musculus strain C57BL6/J chromosome 11 clone ...    42   8.2    1
(AC027214) Homo sapiens clone RP11-521F6, *** SEQUENCING IN ...    42   8.2    1
(CU467990) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   8.2    1
(CT954212) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   8.2    1
(CT797463) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   8.2    1
(CT797460) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   8.2    1
(CT027829) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   8.2    1
(CT027763) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   8.2    1
(BX942834) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   8.2    1
(BX901911) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   8.2    1
(BX890634) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   8.2    1
(AC231238) Muntiacus reevesi clone CH245-310D7, WORKING DRAF...    42   8.2    1
(AC230272) Bos taurus clone CH240-514J13, WORKING DRAFT SEQU...    42   8.2    1
(AC223837) Bos taurus clone CH240-456N18, WORKING DRAFT SEQU...    42   8.2    1
(AC211821) Chlorocebus aethiops clone CH252-192I22, WORKING ...    42   8.2    1
(AC209673) Zea mays chromosome 9 clone CH201-318M16; ZMMBBc0...    42   8.2    1
(AC204442) Pan troglodytes chromosome 7 clone CH251-672G23, ...    42   8.2    1
(AC204179) Nomascus leucogenys leucogenys clone CH271-131K10...    42   8.2    1
(AC196897) Muntiacus reevesi clone CH245-484M16, WORKING DRA...    42   8.2    1
(AC191470) Muntiacus reevesi clone CH245-66I15, WORKING DRAF...    42   8.2    1
(AC189823) Muntiacus muntjak vaginalis clone CH244-539I19, W...    42   8.2    1
(AC186484) Felis catus clone RP86-456P14, WORKING DRAFT SEQU...    42   8.2    1
(AC186442) Cavia porcellus clone CH234-37K14, WORKING DRAFT ...    42   8.2    1
(AC182506) Cavia porcellus clone CH234-343O12, WORKING DRAFT...    42   8.2    1
(AC181684) Strongylocentrotus purpuratus clone R3-30N10, WOR...    42   8.2    1
(AC172885) Brassica rapa subsp. campestris clone KBrH134H15,...    42   8.2    1
(AC169568) Bos taurus clone CH240-223L15, WORKING DRAFT SEQU...    42   8.2    1
(AC024711) Homo sapiens chromosome 15 clone RP11-154H1, WORK...    42   8.2    1
(AK248092) Dugesia japonica mRNA for hnRNP L protein, comple...    42   8.2    1
(BH077273) RPCI-24-398J2.TV RPCI-24 Mus musculus genomic clo...    42   8.2    1
(AZ825143) 2M0100K12F Mouse 10kb plasmid UUGC1M library Mus ...    42   8.2    1
(AZ502229) 1M0341L05R Mouse 10kb plasmid UUGC1M library Mus ...    42   8.2    1
(AZ461885) 1M0267M22R Mouse 10kb plasmid UUGC1M library Mus ...    42   8.2    1
(AQ926471) RPCI-23-256N5.TJ RPCI-23 Mus musculus genomic clo...    42   8.2    1
(AQ908646) GSSTc04804 Trypanosoma cruzi random genomic libra...    42   8.2    1
(ER912381) 3SP120G11 GGTC Gene Trap Library GV09C04 Mus musc...    42   8.2    1
(ER905287) 3SD182B10 GGTC Gene Trap Library GV25C04 Mus musc...    42   8.2    1
(CR070471) Forward strand read from insert in 5'HPRT inserti...    42   8.2    1
(CR020196) Forward strand read from insert in 5'HPRT inserti...    42   8.2    1
(CL413350) RPCI44_432P4.r RPCI-44 Sus scrofa genomic clone R...    42   8.2    1
(BZ862650) CH240_259A16.TV CHORI-240 Bos taurus genomic clon...    42   8.2    1
(BX199786) Danio rerio genomic clone DKEY-218D18, genomic su...    42   8.2    1
(AG102899) Pan troglodytes DNA, clone: PTB-106F14.F.               42   8.2    1
(EB868489) 4880260 ZF03 Danio rerio cDNA clone 2150898, mRNA...    42   8.2    1
(DY733074) EST_ssal_rgb2_88813 ssalrgb2 mixed_tissue Salmo s...    42   8.2    1
(DT060439) AGENCOURT_56126616 NIH_ZGC_10 Danio rerio cDNA cl...    42   8.2    1
(DB309947) Homo sapiens cDNA clone BRHIP3038061, 3' end, mRN...    42   8.2    1
(CT948616) Phaeodactylum tricornutum 5-PRIME EST from clone ...    42   8.2    1
(CN701621) E0451H07-5 NIA Mouse E11.5 whole embryo cDNA libr...    42   8.2    1
(CD540821) B0226A05-5 NIA Mouse Embryonic Germ Cell cDNA Lib...    42   8.2    1
(BU917939) 5011-35 Mouse E14.5 retina lambda ZAP II Library ...    42   8.2    1
(BQ086687) ih88d06.y1 Melton Mouse E16 5 Pancreas Library 2 ...    42   8.2    1
(BQ086416) ih88d06.x1 Melton Mouse E16 5 Pancreas Library 2 ...    42   8.2    1
(FD752089) Afi04_86_B08_C014.g1 Aristolochia fimbriata flowe...    42   8.2    1
(EY363179) CAWZ8639.fwd CAWZ Helobdella robusta Primary Late...    42   8.2    1
(EY309974) CAWX21891.fwd CAWX Helobdella robusta Primary Ear...    42   8.2    1
(EY307894) CAWX20725.fwd CAWX Helobdella robusta Primary Ear...    42   8.2    1
(EY272750) BF01060B1H06.f1 Normalized subtracted keck librar...    42   8.2    1
(EY270419) BF01051B2C04.f1 Normalized subtracted keck librar...    42   8.2    1

>(AU073611) Dictyostelium discoideum slug cDNA, clone SSH663.
          Length = 221

 Score = 75.8 bits (38), Expect = 6e-10
 Identities = 38/38 (100%)
 Strand = Plus / Plus


Query: 118 cattctacacacacacaaatacaaataaattcgcacac 155
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 118 cattctacacacacacaaatacaaataaattcgcacac 155

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 98,795,525
Number of extensions: 38542420
Number of successful extensions: 4281985
Number of sequences better than 10.0: 303
Length of query: 220
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 197
Effective length of database: 99,442,330,388
Effective search space: 19590139086436
Effective search space used: 19590139086436
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 7.18
Homology vs Protein 
Query= Contig-U01805-1 (Contig-U01805-1Q) /CSM_Contig/Contig-U01805-1Q.Seq.d
         (220 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 131,090,328
Number of extensions: 951509
Number of successful extensions: 640
Number of sequences better than 10.0: 0
Number of HSP's gapped: 640
Number of HSP's successfully gapped: 0
Length of query: 73
Length of database: 1,051,180,864
Length adjustment: 44
Effective length of query: 29
Effective length of database: 908,772,268
Effective search space: 26354395772
Effective search space used: 26354395772
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 27 (15.0 bits)
PSORT 

 psg: 0.79  gvh: 0.49  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.43  mip: 0.00
 nuc: 1.04  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: nuclear
	 16.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for Contig-U01805-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0