| Contig-U11681-1 |
| Contig ID |
Contig-U11681-1 |
| Contig update |
2002.12.18 |
| Contig sequence |
 |
| Gap |
gap included |
| Contig length |
1313 |
| Chromosome number (1..6, M) |
3 |
| Chromosome length |
6358359 |
| Start point |
510057 |
| End point |
508763 |
| Strand (PLUS/MINUS) |
MINUS |
| Number of clones |
1 |
| Number of EST |
2 |
| Link to clone list |
U11681 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2008.11.25 |
| Homology vs DNA |
Query= Contig-U11681-1 (Contig-U11681-1Q) /CSM_Contig/Contig-U11681-1Q.Seq.d
(1323 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ376703) Dictyostelium discoideum cDNA clone:ddc29g15, 3' ... 823 0.0 2
(BJ364022) Dictyostelium discoideum cDNA clone:ddc29g15, 5' ... 603 0.0 2
(BJ414738) Dictyostelium discoideum cDNA clone:ddv20c10, 5' ... 60 1e-06 2
(BJ363276) Dictyostelium discoideum cDNA clone:ddc25j24, 5' ... 52 2e-04 2
(BJ387339) Dictyostelium discoideum cDNA clone:dds1e24, 5' e... 52 2e-04 2
(AU269683) Dictyostelium discoideum vegetative cDNA clone:VS... 52 2e-04 2
(BJ359001) Dictyostelium discoideum cDNA clone:ddc12j07, 5' ... 52 2e-04 2
(BJ387685) Dictyostelium discoideum cDNA clone:dds4o05, 5' e... 52 2e-04 2
(BJ324231) Dictyostelium discoideum cDNA clone:dda5l07, 5' e... 52 3e-04 2
(BJ326385) Dictyostelium discoideum cDNA clone:dda16e12, 5' ... 52 3e-04 2
(BJ359778) Dictyostelium discoideum cDNA clone:ddc2o12, 5' e... 52 3e-04 2
(BJ324904) Dictyostelium discoideum cDNA clone:dda8k16, 5' e... 52 3e-04 2
(BJ391120) Dictyostelium discoideum cDNA clone:dds15l03, 5' ... 52 3e-04 2
(AU061557) Dictyostelium discoideum slug cDNA, clone SLE631. 52 3e-04 2
(L49527) Dictyostelium discoideum cortexillin I mRNA, comple... 52 6e-04 2
(AE014839) Plasmodium falciparum 3D7 chromosome 11 section 4... 42 0.013 10
(AL360354) Plasmodium vivax telomeric YAC clone, complete fi... 38 0.24 6
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 38 0.26 10
(AC176913) Strongylocentrotus purpuratus clone R3-32H4, WORK... 42 0.67 3
(BX530079) Zebrafish DNA sequence from clone DKEY-51A16 in l... 48 0.86 1
(AM472639) Vitis vinifera contig VV78X137172.4, whole genome... 48 0.86 1
(L46371) Dictyostelium discoideum cortexillin II mRNA, compl... 48 0.86 1
(AC117080) Dictyostelium discoideum chromosome 2 map complem... 48 0.86 1
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 48 0.86 1
(AC115581) Dictyostelium discoideum chromosome 2 map complem... 48 0.86 1
(BX321918) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 48 0.86 1
(EJ480562) 1095403466224 Global-Ocean-Sampling_GS-28-01-01-1... 48 0.86 1
(AU267522) Dictyostelium discoideum vegetative cDNA clone:VS... 48 0.86 1
(AU264217) Dictyostelium discoideum vegetative cDNA clone:VS... 48 0.86 1
(AU033507) Dictyostelium discoideum slug cDNA, clone SLB112. 48 0.86 1
(BJ415401) Dictyostelium discoideum cDNA clone:ddv22o12, 5' ... 48 0.86 1
(BJ410805) Dictyostelium discoideum cDNA clone:ddv1n19, 5' e... 48 0.86 1
(BJ410557) Dictyostelium discoideum cDNA clone:ddv1b05, 5' e... 48 0.86 1
(EX124978) BR108808 mature green leaf cDNA library KHLM Bras... 48 0.86 1
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 34 0.89 10
(AY160106) Dictyostelium discoideum nucleotide exchange fact... 38 1.2 3
(AC189290) Brassica rapa subsp. pekinensis clone KBrB025O08,... 42 1.4 4
(AC009132) Homo sapiens chromosome 16 clone RP11-503F24, com... 34 1.7 2
(AC182361) Spermophilus tridecemlineatus clone VMRC20-433G18... 46 1.9 5
(AC198259) Aotus nancymaae clone CH258-156J10, WORKING DRAFT... 44 2.6 2
(AM434186) Vitis vinifera contig VV78X002583.2, whole genome... 42 3.0 3
(D26597) Gallus gallus mRNA for alpha-actinin, complete cds. 46 3.4 1
(AC203964) Gasterosteus aculeatus clone VMRC28-143C19, compl... 46 3.4 1
(AL732572) Mouse DNA sequence from clone RP23-32C16 on chrom... 46 3.4 1
(EU116373) Phialocephala fortinii strain 6_70_1 microsatelli... 46 3.4 1
(AY178291) Trifolium repens microsatellite agr1001 sequence. 46 3.4 1
(AC160207) Bos taurus clone CH240-81K22, WORKING DRAFT SEQUE... 46 3.4 1
(AC217277) Zea mays chromosome 1 clone ZMMBBb-166D22; ZMMBBb... 46 3.4 1
(AC024113) Mus musculus chromosome 11 clone RP23-277F6, WORK... 46 3.4 1
(EJ952728) 1093018956418 Global-Ocean-Sampling_GS-30-02-01-1... 46 3.4 1
(EJ952654) 1093018956226 Global-Ocean-Sampling_GS-30-02-01-1... 46 3.4 1
(EJ368898) 1092963716587 Global-Ocean-Sampling_GS-28-01-01-1... 46 3.4 1
(EL469485) CHTS8099.b2_E09.ab1 CHT(LMS) Jerusalem artichoke ... 46 3.4 1
(CU555986) Spc_25YD18 cDNA clone of Developmental Stages Lib... 46 3.4 1
(CB341895) CA32EN0002_IIaF_D10 Cabernet Sauvignon Leaf - CA3... 46 3.4 1
(BU245758) 603780281F1 CSEQCHN34 Gallus gallus cDNA clone Ch... 46 3.4 1
(EY328281) CAWY1466.rev CAWY Helobdella robusta Subtracted E... 46 3.4 1
(EY326900) CAWY11894.rev CAWY Helobdella robusta Subtracted ... 46 3.4 1
(EK402978) 1095469551058 Global-Ocean-Sampling_GS-31-01-01-1... 42 3.9 2
(DY892395) CeleSEQ10611 Cunninghamella elegans pBluescript (... 42 4.0 2
(EJ829687) 1093017576314 Global-Ocean-Sampling_GS-30-02-01-1... 42 4.0 2
(EJ832758) 1093017586730 Global-Ocean-Sampling_GS-30-02-01-1... 42 4.1 2
(AC117082) Dictyostelium discoideum chromosome 2 map complem... 38 4.6 4
(ER481617) 1093015266770 Global-Ocean-Sampling_GS-35-01-01-1... 36 4.7 2
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098... 36 4.7 10
(AF090533) Dictyostelium discoideum unconventional myosin he... 42 4.9 3
(AC202476) Medicago truncatula clone mth2-154p10, WORKING DR... 40 5.3 5
(BY943049) Bombyx mori cDNA, clone:E_FL_e100_06N12_R_0, 3' e... 34 5.4 3
(AM477487) Vitis vinifera contig VV78X122270.6, whole genome... 40 5.5 2
(AC127294) Mus musculus BAC clone RP23-386L1 from chromosome... 34 5.9 7
(AC154190) Mus musculus BAC clone RP24-465P16 from chromosom... 40 6.3 4
(AB017910) Dictyostelium discoideum myoM gene, complete cds. 42 6.4 3
(AC164978) Mus musculus BAC clone RP23-342O10 from chromosom... 38 6.4 5
(AC189198) Brassica rapa subsp. pekinensis clone KBrB004O19,... 40 7.0 4
(DU713956) pyl52a11.b1 HK104 Caenorhabditis briggsae genomic... 38 7.3 2
(U23477) Dictyostelium discoideum phosphatidylinositol-4,5-d... 36 7.8 4
(C90544) Dictyostelium discoideum slug cDNA, clone SSI704. 34 8.0 2
(EK033462) 1092957693290 Global-Ocean-Sampling_GS-31-01-01-1... 32 8.5 2
(EK010499) 1092955168362 Global-Ocean-Sampling_GS-31-01-01-1... 32 8.5 2
(CD836877) BN45.050E01F020103 BN45 Brassica napus cDNA clone... 40 9.0 2
(AM662855) Entamoeba moshkovskii FIC GSS, clone mosh128g05.q1k. 34 9.2 3
(EV085967) BNSCS5CT_UP_115_C09_30MAY2007_075 Brassica napus ... 40 9.6 2
>(BJ376703) Dictyostelium discoideum cDNA clone:ddc29g15, 3' end,
single read.
Length = 697
Score = 823 bits (415), Expect(2) = 0.0
Identities = 415/415 (100%)
Strand = Plus / Minus
Query: 761 gagaaatctgaaaaccaattgctattggagcaagtcaaagaattggcagagcaagagcgt 820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gagaaatctgaaaaccaattgctattggagcaagtcaaagaattggcagagcaagagcgt 505
Query: 821 gttaatatcagtaaagagtttcatttggaatcaatgttaaatatgtacacacaggaatta 880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gttaatatcagtaaagagtttcatttggaatcaatgttaaatatgtacacacaggaatta 445
Query: 881 tcaaatcaaagattcgaacgtttggtaatggaacgtatgataaaggagcaagagaatcaa 940
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcaaatcaaagattcgaacgtttggtaatggaacgtatgataaaggagcaagagaatcaa 385
Query: 941 tcattattaaataatcttttattattaagagatcaattagaagatcatcaaattaaatta 1000
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcattattaaataatcttttattattaagagatcaattagaagatcatcaaattaaatta 325
Query: 1001 tgtaaattacaacaaaatgttcaagaggaagcaactggtaaacgtgctccattatggggt 1060
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgtaaattacaacaaaatgttcaagaggaagcaactggtaaacgtgctccattatggggt 265
Query: 1061 tgtcctttaatctctgctgatctctcaaaagatcaatttgaacaaattcaacttttaggt 1120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgtcctttaatctctgctgatctctcaaaagatcaatttgaacaaattcaacttttaggt 205
Query: 1121 gatctcctagaagaggaatcaaatcgtatcaatagaatagttcaagtttctgaag 1175
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gatctcctagaagaggaatcaaatcgtatcaatagaatagttcaagtttctgaag 150
Score = 250 bits (126), Expect(2) = 0.0
Identities = 126/126 (100%)
Strand = Plus / Minus
Query: 628 tctcaatatccccaaattgttggatgccgaggaccttgtcaatggcaatgccgacgaccg 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 tctcaatatccccaaattgttggatgccgaggaccttgtcaatggcaatgccgacgaccg 638
Query: 688 taccgtgatgttgtacacatccatgttttacaatgcctatgagatggccacaaagaaagt 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 taccgtgatgttgtacacatccatgttttacaatgcctatgagatggccacaaagaaagt 578
Query: 748 ggtttc 753
||||||
Sbjct: 577 ggtttc 572
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,359,801,889
Number of extensions: 85289729
Number of successful extensions: 7971206
Number of sequences better than 10.0: 83
Length of query: 1323
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1299
Effective length of database: 97,308,875,965
Effective search space: 126404229878535
Effective search space used: 126404229878535
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 6.30 |
| Homology vs Protein |
Query= Contig-U11681-1 (Contig-U11681-1Q) /CSM_Contig/Contig-U11681-1Q.Seq.d
(1323 letters)
Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
(Q9Y0T4) RecName: Full=Cortexillin-1; AltName: Full=Cortexillin ... 77 8e-28
L08068_1(L08068|pid:none) Physarum polycephalum actin-binding pr... 63 1e-20
AE014296_690(AE014296|pid:none) Drosophila melanogaster chromoso... 52 1e-13
X53992_1(X53992|pid:none) D.melanogaster mRNA for beta-H spectrin. 52 1e-13
BC108564_1(BC108564|pid:none) Xenopus laevis hypothetical protei... 53 9e-13
AK150044_1(AK150044|pid:none) Mus musculus bone marrow macrophag... 53 1e-12
(Q9QXQ0) RecName: Full=Alpha-actinin-4; AltName: Full=Non-muscle... 53 1e-12
(Q5RCS6) RecName: Full=Alpha-actinin-4; AltName: Full=Non-muscle... 53 1e-12
(O43707) RecName: Full=Alpha-actinin-4; AltName: Full=Non-muscle... 53 1e-12
BC076687_1(BC076687|pid:none) Xenopus tropicalis actinin, alpha ... 53 1e-12
BC054901_1(BC054901|pid:none) Danio rerio actinin, alpha 4, mRNA... 53 1e-12
D89980_1(D89980|pid:none) Homo sapiens mRNA for alpha actinin 4,... 53 1e-12
AK304554_1(AK304554|pid:none) Homo sapiens cDNA FLJ58087 complet... 53 1e-12
AK299955_1(AK299955|pid:none) Homo sapiens cDNA FLJ61380 complet... 53 1e-12
BC077918_1(BC077918|pid:none) Xenopus laevis actinin, alpha 4, m... 52 2e-12
CR361558_3(CR361558|pid:none) Zebrafish DNA sequence from clone ... 53 2e-12
BT058991_1(BT058991|pid:none) Salmo salar clone ssal-rgf-518-135... 53 2e-12
BC070594_1(BC070594|pid:none) Xenopus laevis hypothetical protei... 53 2e-12
BC167879_1(BC167879|pid:none) Xenopus tropicalis cDNA clone MGC:... 53 2e-12
DQ496098_1(DQ496098|pid:none) Homo sapiens actinin alpha 1 isofo... 53 2e-12
AY437436_1(AY437436|pid:none) Rattus norvegicus brain-specific a... 53 2e-12
(Q2PFV7) RecName: Full=Alpha-actinin-1; AltName: Full=Alpha-acti... 53 2e-12
AY892038_1(AY892038|pid:none) Synthetic construct Homo sapiens c... 53 2e-12
A42162(A42162;S02033;A29555;A28450) alpha-actinin 1 - chicken &... 53 2e-12
(P05094) RecName: Full=Alpha-actinin-1; AltName: Full=Alpha-acti... 53 2e-12
(Q7TPR4) RecName: Full=Alpha-actinin-1; AltName: Full=Alpha-acti... 53 2e-12
(P12814) RecName: Full=Alpha-actinin-1; AltName: Full=Alpha-acti... 53 2e-12
AK295099_1(AK295099|pid:none) Homo sapiens cDNA FLJ59209 complet... 53 2e-12
DQ288940_1(DQ288940|pid:none) Mus musculus alpha actinin 1a (Act... 53 2e-12
BC074001_1(BC074001|pid:none) Rattus norvegicus actinin, alpha 1... 53 2e-12
AJ720670_1(AJ720670|pid:none) Gallus gallus partial mRNA for hyp... 53 2e-12
BC099647_1(BC099647|pid:none) Homo sapiens actinin, alpha 3, mRN... 52 3e-12
AK313556_1(AK313556|pid:none) Homo sapiens cDNA, FLJ94117, highl... 52 3e-12
AF450248_1(AF450248|pid:none) Rattus norvegicus skeletal muscle-... 52 3e-12
(Q0III9) RecName: Full=Alpha-actinin-3; AltName: Full=Alpha-acti... 52 3e-12
(Q08043) RecName: Full=Alpha-actinin-3; AltName: Full=Alpha-acti... 52 3e-12
EF512630_1(EF512630|pid:none) Bos taurus alpha-actinin 1 (ACTN1)... 53 3e-12
AY096238_1(AY096238|pid:none) Rattus norvegicus truncated alpha-... 52 3e-12
BC167932_1(BC167932|pid:none) Xenopus tropicalis cDNA clone MGC:... 51 6e-12
BC076640_1(BC076640|pid:none) Xenopus laevis actinin, alpha 3, m... 51 6e-12
BC065595_1(BC065595|pid:none) Danio rerio actinin alpha 3b, mRNA... 51 6e-12
(P20111) RecName: Full=Alpha-actinin-2; AltName: Full=Alpha-acti... 51 7e-12
(Q9JI91) RecName: Full=Alpha-actinin-2; AltName: Full=Alpha-acti... 51 7e-12
AY036877_1(AY036877|pid:none) Mus musculus actinin alpha 2 (Actn... 51 7e-12
AK315250_1(AK315250|pid:none) Homo sapiens cDNA, FLJ96254, highl... 51 7e-12
(P35609) RecName: Full=Alpha-actinin-2; AltName: Full=Alpha-acti... 51 7e-12
AK297886_1(AK297886|pid:none) Homo sapiens cDNA FLJ55401 complet... 51 8e-12
BC076938_1(BC076938|pid:none) Xenopus tropicalis actinin, alpha ... 50 1e-11
U19893_1(U19893|pid:none) Rattus norvegicus alpha actinin mRNA, ... 49 1e-11
FM200072_1(FM200072|pid:none) Histomonas meleagridis partial mRN... 53 4e-11
FADOAA(S00103;A29006) alpha-actinin - slime mold (Dictyostelium ... 56 5e-11
(Q7PKQ5) RecName: Full=Alpha-actinin, sarcomeric; AltName: Full=... 50 6e-11
FN357368_13(FN357368|pid:none) Schistosoma mansoni genome sequen... 52 6e-11
T26147(T26147) hypothetical protein W04D2.1a - Caenorhabditis el... 47 1e-10
A48403(A48403)alpha-actinin - Caenorhabditis elegans (fragment) 47 1e-10
AF208390_1(AF208390|pid:none) Entamoeba histolytica actinin-like... 37 1e-10
(P18091) RecName: Full=Alpha-actinin, sarcomeric; AltName: Full=... 49 2e-10
AE014298_321(AE014298|pid:none) Drosophila melanogaster chromoso... 49 2e-10
AE014298_320(AE014298|pid:none) Drosophila melanogaster chromoso... 49 2e-10
FAFFAA(A35598;S10436)alpha-actinin - fruit fly (Drosophila melan... 49 2e-10
BX248020_1(BX248020|pid:none) human full-length cDNA clone CS0DB... 44 8e-10
AK303044_1(AK303044|pid:none) Homo sapiens cDNA FLJ58651 complet... 44 2e-09
(Q80X90) RecName: Full=Filamin-B; Short=FLN-B; AltName:... 56 4e-09
EU714150_1(EU714150|pid:none) Epinephelus coioides alpha actinin... 45 4e-09
AF043045_1(AF043045|pid:none) Homo sapiens actin-binding protein... 56 5e-09
(Q9NRB5) RecName: Full=Filamin-B; Short=FLN-B; AltName:... 56 5e-09
AF484962_1(AF484962|pid:none) Biomphalaria glabrata alpha-actini... 45 5e-09
(P21333) RecName: Full=Filamin-A; AltName: Full=Alpha-filamin; A... 55 6e-09
AL807376_2(AL807376|pid:none) Mouse DNA sequence from clone RP23... 55 6e-09
(Q8BTM8) RecName: Full=Filamin-A; AltName: Full=Alpha-filamin; A... 55 6e-09
A37098(A37098;A35939;S37776;S37777;A54771;S12115) gelation facto... 55 6e-09
BC151024_1(BC151024|pid:none) Mus musculus filamin, alpha, mRNA ... 55 6e-09
FJ416060_1(FJ416060|pid:none) Rattus norvegicus filamin alpha (F... 55 6e-09
AL807376_1(AL807376|pid:none) Mouse DNA sequence from clone RP23... 55 6e-09
AB191259_1(AB191259|pid:none) Homo sapiens FLNA mRNA for filamin... 55 6e-09
BX664723_1(BX664723|pid:none) Human DNA sequence from clone WI2-... 55 6e-09
AL807376_3(AL807376|pid:none) Mouse DNA sequence from clone RP23... 55 6e-09
AB371577_1(AB371577|pid:none) Homo sapiens FLNA mRNA for filamin... 55 6e-09
AK089311_1(AK089311|pid:none) Mus musculus B6-derived CD11 +ve d... 55 7e-09
AP007164_653(AP007164|pid:none) Aspergillus oryzae RIB40 genomic... 44 7e-09
BC172825_1(BC172825|pid:none) Synthetic construct Mus musculus c... 55 7e-09
A84513_1(A84513|pid:none) Sequence 128 from Patent WO9845704. &... 53 7e-09
AX781306_1(AX781306|pid:none) Sequence 7 from Patent WO03029827. 53 7e-09
(Q14315) RecName: Full=Filamin-C; AltName: Full=Gamma-filamin; A... 53 1e-08
BC151097_1(BC151097|pid:none) Mus musculus filamin C, gamma, mRN... 53 1e-08
(Q8VHX6) RecName: Full=Filamin-C; AltName: Full=Gamma-filamin; A... 53 1e-08
BC158128_1(BC158128|pid:none) Mus musculus filamin C, gamma, mRN... 53 1e-08
AJ012737_1(AJ012737|pid:none) Homo sapiens mRNA for filamin, mus... 53 2e-08
AB056475_1(AB056475|pid:none) Gallus gallus mRNA for cgABP260, c... 54 7e-08
AB056474_1(AB056474|pid:none) Gallus gallus mRNA for filamin, co... 51 7e-08
AF262336_1(AF262336|pid:none) Danio rerio beta-spectrin (sptb) m... 43 7e-08
AB023438_1(AB023438|pid:none) Gallus gallus mRNA for cgABP260 ac... 54 7e-08
AJ534876_1(AJ534876|pid:none) Salmo salar partial mRNA for alpha... 45 2e-07
AF100673_6(AF100673|pid:none) Caenorhabditis elegans cosmid Y66H... 48 3e-07
Z75956_1(Z75956|pid:none) Caenorhabditis elegans Cosmid R31, com... 40 1e-06
T23630(T23630;T24242)hypothetical protein R31.1 - Caenorhabditis... 40 1e-06
AF053496_1(AF053496|pid:none) Caenorhabditis elegans beta chain ... 40 1e-06
AL590451_29(AL590451|pid:none) chromosome IX of strain GB-M1 of ... 42 1e-06
(O76329) RecName: Full=Interaptin; AltName: Full=Alpha-actinin B... 45 2e-06
U70560_1(U70560|pid:none) Entamoeba histolytica actin binding pr... 45 3e-06
AE017343_609(AE017343|pid:none) Cryptococcus neoformans var. neo... 38 3e-06
(Q1ZXH8) RecName: Full=Guanine exchange factor for Rac 30; 55 4e-06
AJ505816_1(AJ505816|pid:none) Caenorhabditis elegans mRNA for VA... 41 5e-06
AL031637_4(AL031637|pid:none) Caenorhabditis elegans YAC Y47H9B,... 41 5e-06
AJ505905_1(AJ505905|pid:none) Caenorhabditis elegans mRNA for VA... 41 5e-06
AJ505815_1(AJ505815|pid:none) Caenorhabditis elegans mRNA for VA... 41 5e-06
AJ505903_1(AJ505903|pid:none) Caenorhabditis elegans mRNA for VA... 41 5e-06
Z92788_8(Z92788|pid:none) Caenorhabditis elegans Cosmid F53B8, c... 41 5e-06
Z92788_6(Z92788|pid:none) Caenorhabditis elegans Cosmid F53B8, c... 41 5e-06
Z92788_2(Z92788|pid:none) Caenorhabditis elegans Cosmid F53B8, c... 41 5e-06
AK044856_1(AK044856|pid:none) Mus musculus 9.5 days embryo parth... 55 6e-06
AL031542_3(AL031542|pid:none) Human DNA sequence from clone RP5-... 40 7e-06
(Q9NRC6) RecName: Full=Spectrin beta chain, brain 4; AltName: Fu... 41 9e-06
AF072678_1(AF072678|pid:none) Trichomonas vaginalis alpha-actini... 54 1e-05
AL031542_1(AL031542|pid:none) Human DNA sequence from clone RP5-... 39 1e-05
(P11532) RecName: Full=Dystrophin; 39 1e-05
(Q5GN48) RecName: Full=Dystrophin; &AJ865385_1(AJ865385|pid:none) 39 1e-05
AL031542_2(AL031542|pid:none) Human DNA sequence from clone RP5-... 39 1e-05
CR858564_1(CR858564|pid:none) Pongo abelii mRNA; cDNA DKFZp468A1... 39 1e-05
BC009242_1(BC009242|pid:none) Homo sapiens dystrophin, mRNA (cDN... 39 1e-05
CR859459_1(CR859459|pid:none) Pongo abelii mRNA; cDNA DKFZp468E2... 39 1e-05
AF014928_1(AF014928|pid:none) Trichomonas vaginalis alpha actini... 54 1e-05
AY382663_1(AY382663|pid:none) Hirudo medicinalis filamin mRNA, c... 54 2e-05
T22552(T22552;T27703)hypothetical protein ZK1151.1 - Caenorhabdi... 41 1e-04
AF500275_1(AF500275|pid:none) Gadus morhua fast skeletal muscle ... 50 1e-04
(P11531) RecName: Full=Dystrophin; &S28916(S28916;B27162;S10922... 37 2e-04
T15570(T15570)hypothetical protein C23F12.2 - Caenorhabditis ele... 35 2e-04
U39676_3(U39676|pid:none) Caenorhabditis elegans cosmid C23F12, ... 35 2e-04
AE014297_2391(AE014297|pid:none) Drosophila melanogaster chromos... 49 4e-04
AF174492_1(AF174492|pid:none) Drosophila melanogaster filamin1 m... 49 4e-04
FN357485_1(FN357485|pid:none) Schistosoma mansoni genome sequenc... 49 4e-04
AF521597_1(AF521597|pid:none) Drosophila melanogaster MSP-300 (M... 44 6e-04
AF435011_1(AF435011|pid:none) Homo sapiens NUANCE (NUA) mRNA, co... 40 9e-04
(Q8WXH1) RecName: Full=Nesprin-2; AltName: Full=Nuclear envelope... 40 9e-04
AF495911_1(AF495911|pid:none) Homo sapiens nesprin-2 mRNA, compl... 40 9e-04
AK298496_1(AK298496|pid:none) Homo sapiens cDNA FLJ54739 complet... 45 0.004
AY811720_1(AY811720|pid:none) Schistosoma japonicum clone SJCHGC... 45 0.008
AE013599_3674(AE013599|pid:none) Drosophila melanogaster chromos... 33 0.009
AL954831_1(AL954831|pid:none) Zebrafish DNA sequence from clone ... 39 0.010
AB020745_9(AB020745|pid:none) Arabidopsis thaliana genomic DNA, ... 32 0.013
U77673_1(U77673|pid:none) Arabidopsis thaliana fimbrin-like prot... 32 0.013
AK294906_1(AK294906|pid:none) Homo sapiens cDNA FLJ51840 complet... 44 0.013
J02666_1(J02666|pid:none) Chicken alpha-actinin mRNA, partial cds. 44 0.013
BX511069_3(BX511069|pid:none) Zebrafish DNA sequence from clone ... 44 0.017
AM459664_1(AM459664|pid:none) Vitis vinifera contig VV78X045040.... 36 0.056
(P15508) RecName: Full=Spectrin beta chain, erythrocyte; AltName... 41 0.11
CR382135_291(CR382135|pid:none) Debaryomyces hansenii strain CBS... 31 0.16
T06799(T06799) fimbrin/plastin-like protein - wheat (fragment) ... 30 0.17
FM992689_450(FM992689|pid:none) Candida dubliniensis CD36 chromo... 32 0.21
BT064193_1(BT064193|pid:none) Zea mays full-length cDNA clone ZM... 34 0.27
AL845550_2(AL845550|pid:none) Zebrafish DNA sequence from clone ... 35 0.29
AB209415_1(AB209415|pid:none) Homo sapiens mRNA for spectrin, be... 39 0.55
J05500_1(J05500|pid:none) Human beta-spectrin (SPTB) mRNA, compl... 39 0.55
BC150783_1(BC150783|pid:none) Mus musculus spectrin beta 1, mRNA... 39 0.55
BC136284_1(BC136284|pid:none) Homo sapiens spectrin, beta, eryth... 39 0.55
AY238343_1(AY238343|pid:none) Rattus norvegicus erythroid spectr... 39 0.55
AB384944_1(AB384944|pid:none) Synthetic construct DNA, clone: pF... 39 0.55
J05500_2(J05500|pid:none) Human beta-spectrin (SPTB) mRNA, compl... 39 0.55
AP003202_3(AP003202|pid:none) Oryza sativa Japonica Group genomi... 33 0.58
(Q9FKI0) RecName: Full=Fimbrin-like protein 2; &AB011485_5(AB01... 31 0.58
AL096699_4(AL096699|pid:none) Human DNA sequence from clone RP5-... 33 0.74
(A8G2I8) RecName: Full=Putative metalloprotease P9215_02001; ... 38 0.93
X14183_1(X14183|pid:none) Rat 5' mRNA for Duchenne muscular dyst... 37 1.2
S06461(S06461)dystrophin, brain - rat (fragment) 37 1.2
AP005643_13(AP005643|pid:none) Oryza sativa Japonica Group genom... 33 1.3
AB179173_1(AB179173|pid:none) Macaca fascicularis testis cDNA cl... 29 1.3
FN357316_44(FN357316|pid:none) Schistosoma mansoni genome sequen... 37 1.6
AJ544618_1(AJ544618|pid:none) Takifugu rubripes utrn gene for pu... 37 1.6
AP004040_3(AP004040|pid:none) Oryza sativa Japonica Group genomi... 28 2.1
BC105483_1(BC105483|pid:none) Bos taurus plastin 3 (T isoform), ... 30 2.1
(A7E3Q8) RecName: Full=Plastin-3; AltName: Full=T-plastin; &BT0... 30 2.1
AY893127_1(AY893127|pid:none) Synthetic construct Homo sapiens c... 30 2.1
(P13797) RecName: Full=Plastin-3; AltName: Full=T-plastin; &A34... 30 2.1
AK222801_1(AK222801|pid:none) Homo sapiens mRNA for plastin 3 va... 30 2.1
AL589842_1(AL589842|pid:none) Human DNA sequence from clone RP11... 30 2.1
AK300575_1(AK300575|pid:none) Homo sapiens cDNA FLJ50683 complet... 30 2.1
M22299_1(M22299|pid:none) Human T-plastin polypeptide mRNA, comp... 30 2.1
CR859218_1(CR859218|pid:none) Pongo abelii mRNA; cDNA DKFZp459D0... 30 2.1
BC008588_1(BC008588|pid:none) Homo sapiens, Similar to plastin 3... 30 2.2
AK294385_1(AK294385|pid:none) Homo sapiens cDNA FLJ61108 complet... 30 2.2
(A3PAQ0) RecName: Full=Putative metalloprotease P9301_02021; ... 36 2.7
X04324_1(X04324|pid:none) Dictyostelium discoideum gene fragment... 36 2.7
BX276181_2(BX276181|pid:none) Zebrafish DNA sequence from clone ... 36 3.6
CT025939_3(CT025939|pid:none) Zebrafish DNA sequence from clone ... 36 3.6
(O88818) RecName: Full=Plastin-3; AltName: Full=T-plastin; &AB0... 28 4.5
(Q99K51) RecName: Full=Plastin-3; AltName: Full=T-plastin; &AB1... 28 4.5
AK160501_1(AK160501|pid:none) Mus musculus adult male tongue cDN... 28 4.5
(Q63598) RecName: Full=Plastin-3; AltName: Full=T-plastin; 28 4.5
AJ720945_1(AJ720945|pid:none) Gallus gallus mRNA for hypothetica... 29 4.5
BC076470_1(BC076470|pid:none) Danio rerio plastin 3 (T isoform),... 29 4.5
S31765(S31765) T-plastin - rat (fragment) &X70706_1(X70706|pid:... 28 4.5
(A2BNX7) RecName: Full=Putative metalloprotease A9601_02001; ... 35 4.6
AM910987_245(AM910987|pid:none) Plasmodium knowlesi strain H chr... 35 4.6
AF225960_1(AF225960|pid:none) Rattus norvegicus spectrin-like pr... 35 4.6
BC139788_1(BC139788|pid:none) Homo sapiens spectrin, beta, non-e... 35 4.6
(Q9QWN8) RecName: Full=Spectrin beta chain, brain 2; AltName: Fu... 35 4.6
(O15020) RecName: Full=Spectrin beta chain, brain 2; AltName: Fu... 35 4.6
BC079860_1(BC079860|pid:none) Mus musculus spectrin beta 3, mRNA... 35 4.6
DQ989326_2(DQ989326|pid:none) Papaya leaf curl virus isolate AD ... 35 4.6
AK147671_1(AK147671|pid:none) Mus musculus adult male brain UNDE... 35 4.6
BC089653_1(BC089653|pid:none) Xenopus tropicalis MGC107867 prote... 28 5.7
(P62287) RecName: Full=Abnormal spindle-like microcephaly-associ... 35 6.0
(P62297) RecName: Full=Abnormal spindle-like microcephaly-associ... 35 6.0
AL353809_4(AL353809|pid:none) Human DNA sequence from clone RP11... 35 6.0
(P62285) RecName: Full=Abnormal spindle-like microcephaly-associ... 35 6.0
AY099891_1(AY099891|pid:none) Homo sapiens clone JBASP002 abnorm... 35 6.0
AY488938_1(AY488938|pid:none) Gorilla gorilla ASPM (ASPM) gene, ... 35 6.0
(P62286) RecName: Full=Abnormal spindle-like microcephaly-associ... 35 6.0
AY508451_1(AY508451|pid:none) Gorilla gorilla abnormal spindle-l... 35 6.0
(P62291) RecName: Full=Abnormal spindle-like microcephaly-associ... 35 6.0
(Q9NVS1) RecName: Full=Abnormal spindle-like microcephaly-associ... 35 6.0
AK001380_1(AK001380|pid:none) Homo sapiens cDNA FLJ10518 fis, cl... 35 6.0
(P62289) RecName: Full=Abnormal spindle-like microcephaly-associ... 35 6.0
AF509326_1(AF509326|pid:none) Homo sapiens abnormal spindles mRN... 35 6.0
(P62293) RecName: Full=Abnormal spindle-like microcephaly-associ... 35 6.0
AY367067_1(AY367067|pid:none) Pongo pygmaeus abnormal spindle-li... 35 6.0
(P62292) RecName: Full=Abnormal spindle-like microcephaly-associ... 35 6.0
AY497016_1(AY497016|pid:none) Pan troglodytes abnormal spindle-l... 35 6.0
(P62283) RecName: Full=Abnormal spindle-like microcephaly-associ... 35 6.0
AY488966_1(AY488966|pid:none) Pongo pygmaeus ASPM (ASPM) gene, e... 35 6.0
FN357387_2(FN357387|pid:none) Schistosoma mansoni genome sequenc... 35 6.1
FN357387_3(FN357387|pid:none) Schistosoma mansoni genome sequenc... 35 6.1
U64854_1(U64854|pid:none) Caenorhabditis elegans cosmid K11C4, c... 35 6.1
AF166170_1(AF166170|pid:none) Caenorhabditis elegans beta-G spec... 35 6.1
AK298501_1(AK298501|pid:none) Homo sapiens cDNA FLJ50605 complet... 28 6.2
BC061655_1(BC061655|pid:none) Xenopus laevis hypothetical protei... 29 7.4
AK030996_1(AK030996|pid:none) Mus musculus adult male thymus cDN... 27 7.4
AK151542_1(AK151542|pid:none) Mus musculus bone marrow macrophag... 27 7.4
(Q61233) RecName: Full=Plastin-2; AltName: Full=L-plastin; AltNa... 27 7.4
(Q6P698) RecName: Full=Plastin-2; AltName: Full=L-plastin; AltNa... 27 7.4
AK009211_1(AK009211|pid:none) Mus musculus adult male tongue cDN... 27 7.9
M74773_1(M74773|pid:none) Mus musculus brain beta spectrin (Spnb... 35 7.9
CU595952_2(CU595952|pid:none) Zebrafish DNA sequence from clone ... 35 7.9
AK220456_1(AK220456|pid:none) Mus musculus mRNA for mKIAA4049 pr... 35 7.9
(Q01082) RecName: Full=Spectrin beta chain, brain 1; AltName: Fu... 35 7.9
BC137282_1(BC137282|pid:none) Homo sapiens spectrin, beta, non-e... 35 7.9
BC124113_1(BC124113|pid:none) Danio rerio similar to Spectrin be... 35 7.9
BC095643_1(BC095643|pid:none) Danio rerio hypothetical protein L... 35 7.9
AY238344_1(AY238344|pid:none) Rattus norvegicus non-erythroid sp... 35 7.9
AK157727_1(AK157727|pid:none) Mus musculus 9.5 days embryo parth... 35 7.9
AB209748_1(AB209748|pid:none) Homo sapiens mRNA for spectrin, be... 35 7.9
BC114848_1(BC114848|pid:none) Bos taurus spectrin, beta, non-ery... 35 7.9
(P11533) RecName: Full=Dystrophin; &S02041(S02041;S02013;S71487... 35 7.9
>(Q9Y0T4) RecName: Full=Cortexillin-1; AltName: Full=Cortexillin I;
&AF151101_1(AF151101|pid:none)
Length = 440
Score = 77.4 bits (189), Expect(2) = 8e-28
Identities = 36/71 (50%), Positives = 49/71 (69%)
Frame = +3
Query: 90 LAQSRWESAQEKAFLSWVNSLLSKKNLKIENISTDFSDGTKLIYFLELVSNKKCRRKFNP 269
+A WE QEKAF +WVNS+L K+ KI +++ D SDG KLI+FLEL+S KK +KF+
Sbjct: 1 MAGKDWEIVQEKAFTAWVNSVLDKRGEKISDVAKDLSDGVKLIFFLELISGKKFNKKFDY 60
Query: 270 EPKDKNSKYYN 302
EPK + + N
Sbjct: 61 EPKARINMIQN 71
Score = 71.2 bits (173), Expect(2) = 8e-28
Identities = 43/99 (43%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Frame = +1
Query: 304 ALWFIEEELDIKIRSISSIGAEDFYDGNKKMIFGFLWSLYRKFRILGIRANXXXXXXXXX 483
AL F+E+EL IK++ I GAEDF D NKKMI GFLW+LYRK+RI
Sbjct: 75 ALHFLEDELKIKVQGI---GAEDFVDNNKKMILGFLWTLYRKYRIA-------------- 117
Query: 484 XXXXNNHQVSMEQTEAENNLLAWCSNLT----GMNVTQF 588
+S +E LL WC N T G+NVT F
Sbjct: 118 -------VISEGDKSSEEGLLLWCKNTTTGYNGVNVTSF 149
Score = 45.8 bits (107), Expect = 0.003
Identities = 17/33 (51%), Positives = 29/33 (87%)
Frame = +2
Query: 629 LNIPKLLDAEDLVNGNADDRTVMLYTSMFYNAY 727
L +PKLL+AE+++ G D+R+++LYTS+F++AY
Sbjct: 196 LGVPKLLEAEEVMRGTTDERSLVLYTSLFFHAY 228
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,736,184,194
Number of extensions: 32601845
Number of successful extensions: 65954
Number of sequences better than 10.0: 243
Number of HSP's gapped: 65863
Number of HSP's successfully gapped: 475
Length of query: 441
Length of database: 1,051,180,864
Length adjustment: 132
Effective length of query: 309
Effective length of database: 623,955,076
Effective search space: 192802118484
Effective search space used: 192802118484
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
0 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
1 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |