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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U01797-1
Contig ID Contig-U01797-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U01797-1 (Contig-U01797-1Q) /CSM_Contig/Contig-U01797-1Q.Seq.d
CAAAAAAAAAAAAAAAAAAACTATAAAAATAGTTGTAGTATTAGTACACA
AATTATATTAAATTTACACAAATTTTTTTTTTCCAAATCAATAATAAAAA
AAATAAACCCACACCACCAAAAATTTGTATACATAAATAATTTAACACAA
TAAGCTTTTTTGTGCAGGAATAAAAAAAAAAAAAAAAAAAAACTTTTTTT
ATTAAATTAAAGAAGAAAAA----------GCGGNAACCTTTTTTTATTG
AATTTGGGGGGCANCCCGGTGGGGTGCTCTTNTATTGTAAACTTTTGGGA
TCTTTAAACATATAAAAAAAAAAGAACACAATTGTCAGACCCAGTTAATA
AGGTTAGCCAAACTCAACACACAGGTTGATGATGTTACAAATCCCATGCC
CATTGCCGTTGGTAAAATGTTGGGTAATCCACCAAAGGTTTCGGGATTTC
CGAGGTAGAGGGTGAAAATTTGAACCAGGGTGCTCAACAATTCCAAAGGG
GGGCTAATGAAATCAAACGTTTAATGTGGTGTGGAAATTTAAAACTTACT
CTTATCATTATTGCAGTAGTTGTGCTCTTATTGGTTGTTATTATTGTACC
AATTGTTCTCAAATTTACATAAATCAATTTCAAAAAGGGGAAAACAACGT
TCATATATATATTTAGGAATTCAAAAAATTAAAAAAAAAAAAAAAAAGTT
ATAACTCAAAATAATAAATAAGTAATAATAACCAAAAAAAAAAAAAAGAA
ACAAATAATAACTAGTAGCAAATAATAAATAATAATAATAAATAACAAAT
AATACAATATAAATTCATTTTTTATATACAGTGCAAACTATAGTATTTAA
ACAATAGCACACAAATATATATATTTGTAAATATAATAACCCAATATCAA
AAAAAAAAAAACAAAAATAAAAAAAAAAAGAAAAAAAAAAAAAAAAGAAA
ATAAAATCA
Gap gap included
Contig length 949
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 2915971
End point 2916925
Strand (PLUS/MINUS) PLUS
Number of clones 17
Number of EST 18
Link to clone list U01797
List of clone(s) 

est1=SSH580F,1,221
est2=SSH351F,4,192
est3=SSL764Z,222,908
est4=SSM718Z,237,672
est5=SSM361E,253,671
est6=SSB132F,254,542
est7=SSH266E,263,724
est8=SSH785F,263,594
est9=SSK419Z,265,724
est10=SSM735Z,269,673
est11=SSC615F,315,782
est12=SSJ122Z,324,728
est13=SSC384Z,385,916
est14=SSB627Z,415,922
est15=SSH177Z,462,953
est16=SSH580Z,499,904
est17=SSM796Z,499,917
est18=SSI885Z,644,951
Translated Amino Acid sequence 
kkkkkkl*k*l*y*ytnyikftqifffqinnkknkptppkicihk*fntisffvqe*KKK
KKKTFFIKLKKK---

---RXPFFIEFGGXPGGVLXYCKLLGSLNI*kkkntivrps**g*pnsthrlmmlqipcp
lplvkcwvihqrfrdfrgrg*kfepgcstipkgg**nqtfnvvwkfktysyhycsscali
gcyyctncsqiyinqfqkgennvhiyi*efkklkkkkksynsk**isnnnqkkkketnnn
**qiinnnnk*qiiqykfifyiqckl*ylnnstqiyifvniitqyqkkknknkkkkkkkk
krk*n
Translated Amino Acid sequence (All Frames) 
Frame A:
qkkkkknyknscsistqiilnlhkfffsksiikkinphhqkfvyinnltq*aflcrnkkk
kkkklflln*rrk---

---axtffy*iwgaxrwgalxl*tfgifkhikkkehncqtqlirlaklntqvddvtnpmp
iavgkmlgnppkvsgfpr*rvki*trvlnnskgglmksnv*cgvei*nlllsllq*lcsy
wllllyqlfsnlhksiskrgkqrsyiylgiqkikkkkkkl*lkiink***pkkkkrnk**
lvannk****itnnti*ihflytvqtivfkq*htniyickynnpiskkkkqk*kkkekkk
kkkiks

Frame B:
kkkkkktikivvvlvhkly*iytnfffpnq**kk*thttknlyt*ii*hnklfcagikkk
kkknffy*ikeek---

---RXPFFIEFGGXPGGVLXYCKLLGSLNI*kkkntivrps**g*pnsthrlmmlqipcp
lplvkcwvihqrfrdfrgrg*kfepgcstipkgg**nqtfnvvwkfktysyhycsscali
gcyyctncsqiyinqfqkgennvhiyi*efkklkkkkksynsk**isnnnqkkkketnnn
**qiinnnnk*qiiqykfifyiqckl*ylnnstqiyifvniitqyqkkknknkkkkkkkk
krk*n

Frame C:
kkkkkkl*k*l*y*ytnyikftqifffqinnkknkptppkicihk*fntisffvqe*KKK
KKKTFFIKLKKK---

---gnlfllnlggxpvgcsxivnfwdl*tykkkrtqlsdpvnkvsqtqhtg**cykshah
crw*nvg*stkgfgisevegenlnqgaqqfqrganeikrlmwcgnlkltliiiavvvlll
vviivpivlkft*infkkgkttfiyifrnskn*kkkkkvitqnnk*viitkkkkkkqiit
ssk**iiiinnk*yninsffiysanysi*tiahkyiyl*i**pnikkkktkikkkrkkkk
kenki
own update 2004. 6. 7
Homology vs CSM-cDNA 
Query= Contig-U01797-1 (Contig-U01797-1Q)
/CSM_Contig/Contig-U01797-1Q.Seq.d
         (959 letters)

Database: CSM
           8361 sequences; 7,895,291 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U01797-1 (Contig-U01797-1Q) /CSM_Contig/Conti...   773  0.0
Contig-U05712-1 (Contig-U05712-1Q) /CSM_Contig/Conti...   333  3e-91
Contig-U11801-1 (Contig-U11801-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U09533-1 (Contig-U09533-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U12785-1 (Contig-U12785-1Q) /CSM_Contig/Conti...    38  0.024
Contig-U12594-1 (Contig-U12594-1Q) /CSM_Contig/Conti...    38  0.024
Contig-U10938-1 (Contig-U10938-1Q) /CSM_Contig/Conti...    38  0.024
Contig-U10594-1 (Contig-U10594-1Q) /CSM_Contig/Conti...    38  0.024
Contig-U06916-1 (Contig-U06916-1Q) /CSM_Contig/Conti...    38  0.024
Contig-U14382-1 (Contig-U14382-1Q) /CSM_Contig/Conti...    36  0.094

>Contig-U01797-1 (Contig-U01797-1Q) /CSM_Contig/Contig-U01797-1Q.Seq.d
          Length = 959

 Score =  773 bits (390), Expect = 0.0
 Identities = 416/426 (97%)
 Strand = Plus / Plus

                                                                       
Query: 247 attgaatttggggggcancccggtggggtgctcttntattgtaaacttttgggatcttta 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 attgaatttggggggcancccggtggggtgctcttntattgtaaacttttgggatcttta 306

                                                                       
Query: 307 aacatatnnnnnnnnnngaacacaattgtcagacccagttaataaggttagccaaactca 366
           |||||||          |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 aacatataaaaaaaaaagaacacaattgtcagacccagttaataaggttagccaaactca 366

                                                                       
Query: 367 acacacaggttgatgatgttacaaatcccatgcccattgccgttggtaaaatgttgggta 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 acacacaggttgatgatgttacaaatcccatgcccattgccgttggtaaaatgttgggta 426

                                                                       
Query: 427 atccaccaaaggtttcgggatttccgaggtagagggtgaaaatttgaaccagggtgctca 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 atccaccaaaggtttcgggatttccgaggtagagggtgaaaatttgaaccagggtgctca 486

                                                                       
Query: 487 acaattccaaaggggggctaatgaaatcaaacgtttaatgtggtgtggaaatttaaaact 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 acaattccaaaggggggctaatgaaatcaaacgtttaatgtggtgtggaaatttaaaact 546

                                                                       
Query: 547 tactcttatcattattgcagtagttgtgctcttattggttgttattattgtaccaattgt 606
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 tactcttatcattattgcagtagttgtgctcttattggttgttattattgtaccaattgt 606

                                                                       
Query: 607 tctcaaatttacataaatcaatttcaaaaaggggaaaacaacgttcatatatatatttag 666
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 tctcaaatttacataaatcaatttcaaaaaggggaaaacaacgttcatatatatatttag 666

                 
Query: 667 gaattc 672
           ||||||
Sbjct: 667 gaattc 672


 Score =  192 bits (97), Expect = 7e-49
 Identities = 133/151 (88%)
 Strand = Plus / Plus

                                                                       
Query: 21  ctataaaaatagttgtagtattagtacacaaattatattaaatttacacaaannnnnnnn 80
           ||||||||||||||||||||||||||||||||||||||||||||||||||||        
Sbjct: 21  ctataaaaatagttgtagtattagtacacaaattatattaaatttacacaaatttttttt 80

                                                                       
Query: 81  nnccaaatcaataatnnnnnnnntaaacccacaccaccaaaaatttgtatacataaataa 140
             |||||||||||||        |||||||||||||||||||||||||||||||||||||
Sbjct: 81  ttccaaatcaataataaaaaaaataaacccacaccaccaaaaatttgtatacataaataa 140

                                          
Query: 141 tttaacacaataagcttttttgtgcaggaat 171
           |||||||||||||||||||||||||||||||
Sbjct: 141 tttaacacaataagcttttttgtgcaggaat 171


 Score =  167 bits (84), Expect = 4e-41
 Identities = 84/84 (100%)
 Strand = Plus / Plus

                                                                       
Query: 815 tcattttttatatacagtgcaaactatagtatttaaacaatagcacacaaatatatatat 874
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 tcattttttatatacagtgcaaactatagtatttaaacaatagcacacaaatatatatat 874

                                   
Query: 875 ttgtaaatataataacccaatatc 898
           ||||||||||||||||||||||||
Sbjct: 875 ttgtaaatataataacccaatatc 898


 Score = 71.9 bits (36), Expect = 2e-12
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 698 gttataactcaaaataataaataagtaataataacc 733
           ||||||||||||||||||||||||||||||||||||
Sbjct: 698 gttataactcaaaataataaataagtaataataacc 733


 Score = 40.1 bits (20), Expect = 0.006
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 201 attaaattaaagaagaaaaa 220
           ||||||||||||||||||||
Sbjct: 201 attaaattaaagaagaaaaa 220


 Score = 36.2 bits (18), Expect = 0.094
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 861 acaaatatatatatttgt 878
           ||||||||||||||||||
Sbjct: 878 acaaatatatatatttgt 861


 Score = 30.2 bits (15), Expect = 5.8
 Identities = 22/23 (95%), Gaps = 1/23 (4%)
 Strand = Plus / Plus

                                  
Query: 709 aaataataaataagtaataataa 731
           ||||||||||||| |||||||||
Sbjct: 770 aaataataaataa-taataataa 791


>Contig-U05712-1 (Contig-U05712-1Q) /CSM_Contig/Contig-U05712-1Q.Seq.d
          Length = 786

 Score =  333 bits (168), Expect = 3e-91
 Identities = 294/332 (88%), Gaps = 3/332 (0%)
 Strand = Plus / Plus

                                                                       
Query: 333 tgtcagacccagttaataaggttagccaaactcaacacacaggttgatgatgttacaaat 392
           ||||||| ||||||||||| || |  ||||||||||| ||| ||||||||||||||||||
Sbjct: 72  tgtcagaaccagttaataaagtaaaacaaactcaaca-acaagttgatgatgttacaaat 130

                                                                       
Query: 393 cccatgcccattgccgttggtaaaatgttgggtaatccaccaaaggtttcgggatttccg 452
            |||||| |||||| |||||||||||||| | ||||| || ||| ||||| | |||  | 
Sbjct: 131 accatgcacattgcagttggtaaaatgttagataatcaacaaaaagtttcagaattaac- 189

                                                                       
Query: 453 aggtagagggtgaaaatttgaaccagggtgctcaacaattccaaaggggggctaatgaaa 512
           || || || |||||||| |||| || ||||||||||||||| ||| |  | |||||||||
Sbjct: 190 agata-agagtgaaaatatgaaacaaggtgctcaacaattcaaaaagaagactaatgaaa 248

                                                                       
Query: 513 tcaaacgtttaatgtggtgtggaaatttaaaacttactcttatcattattgcagtagttg 572
           |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 249 tcaaacgtttaatgtggtgtagaaatataaaacttactcttatcattattgcagtagttg 308

                                                                       
Query: 573 tgctcttattggttgttattattgtaccaattgttctcaaatttacataaatcaatttca 632
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 309 tgctcttattggttgttattattgtaccaattgttctcaaatttacataaatcaatttaa 368

                                           
Query: 633 aaaaggggaaaacaacgttcatatatatattt 664
           |||| || |||||||| || ||||||||||||
Sbjct: 369 aaaaaggaaaaacaacattaatatatatattt 400


 Score =  167 bits (84), Expect = 4e-41
 Identities = 84/84 (100%)
 Strand = Plus / Plus

                                                                       
Query: 815 tcattttttatatacagtgcaaactatagtatttaaacaatagcacacaaatatatatat 874
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tcattttttatatacagtgcaaactatagtatttaaacaatagcacacaaatatatatat 668

                                   
Query: 875 ttgtaaatataataacccaatatc 898
           ||||||||||||||||||||||||
Sbjct: 669 ttgtaaatataataacccaatatc 692


 Score = 71.9 bits (36), Expect = 2e-12
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 698 gttataactcaaaataataaataagtaataataacc 733
           ||||||||||||||||||||||||||||||||||||
Sbjct: 433 gttataactcaaaataataaataagtaataataacc 468


 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 709 aaataataaataagtaataataacc 733
           |||||||||||||||||||||||||
Sbjct: 504 aaataataaataagtaataataacc 528


 Score = 36.2 bits (18), Expect = 0.094
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 861 acaaatatatatatttgt 878
           ||||||||||||||||||
Sbjct: 672 acaaatatatatatttgt 655


 Score = 30.2 bits (15), Expect = 5.8
 Identities = 22/23 (95%), Gaps = 1/23 (4%)
 Strand = Plus / Plus

                                  
Query: 709 aaataataaataagtaataataa 731
           ||||||||||||| |||||||||
Sbjct: 564 aaataataaataa-taataataa 585


>Contig-U11801-1 (Contig-U11801-1Q) /CSM_Contig/Contig-U11801-1Q.Seq.d
          Length = 1466

 Score = 40.1 bits (20), Expect = 0.006
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 708 aaaataataaataagtaataataa 731
           |||||||||||||| |||||||||
Sbjct: 154 aaaataataaataactaataataa 177


 Score = 38.2 bits (19), Expect = 0.024
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 709 aaataataaataagtaataataa 731
           ||||||||||||| |||||||||
Sbjct: 133 aaataataaataactaataataa 155


  Database: CSM
    Posted date:  Jun 7, 2004  8:33 AM
  Number of letters in database: 7,895,291
  Number of sequences in database:  8361
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,888
Number of Sequences: 8361
Number of extensions: 18888
Number of successful extensions: 2090
Number of sequences better than 10.0: 247
length of query: 959
length of database: 7,895,291
effective HSP length: 16
effective length of query: 943
effective length of database: 7,761,515
effective search space: 7319108645
effective search space used: 7319108645
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 5. 7
Homology vs DNA 
Query= Contig-U01797-1 (Contig-U01797-1Q) /CSM_Contig/Contig-U01797-1Q.Seq.d
         (959 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C93829) Dictyostelium discoideum slug cDNA, clone SSL764.        692   0.0    3
(AY392436) Dictyostelium discoideum synaptobrevin gene, comp...   291   e-130  3
(C84160) Dictyostelium discoideum slug cDNA, clone SSC384.        289   e-123  3
(AU038029) Dictyostelium discoideum slug cDNA, clone SSH177.      285   e-114  2
(AU038337) Dictyostelium discoideum slug cDNA, clone SSH580.      266   e-109  2
(C93402) Dictyostelium discoideum slug cDNA, clone SSM796.        264   e-108  2
(C90766) Dictyostelium discoideum slug cDNA, clone SSJ122.        291   3e-98  3
(AU037221) Dictyostelium discoideum slug cDNA, clone SSB627.      224   3e-96  2
(AU038096) Dictyostelium discoideum slug cDNA, clone SSH266.      291   4e-94  3
(C91544) Dictyostelium discoideum slug cDNA, clone SSK419.        291   4e-94  3
(C93376) Dictyostelium discoideum slug cDNA, clone SSM718.        291   4e-94  3
(AU039082) Dictyostelium discoideum slug cDNA, clone SSM361.      291   4e-94  3
(C93170) Dictyostelium discoideum slug cDNA, clone SSM735.        276   3e-92  4
(AU073576) Dictyostelium discoideum slug cDNA, clone SSH580.      135   1e-58  3
(AU073491) Dictyostelium discoideum slug cDNA, clone SSH351.      135   2e-52  3
(AU071839) Dictyostelium discoideum slug cDNA, clone SSC615.      129   1e-45  3
(C90660) Dictyostelium discoideum slug cDNA, clone SSI885.        167   6e-39  2
(C94425) Dictyostelium discoideum slug cDNA, clone SSK783.        167   1e-36  1
(AU073670) Dictyostelium discoideum slug cDNA, clone SSH785.       72   6e-20  3
(AU074459) Dictyostelium discoideum slug cDNA, clone SSK783.       72   2e-19  3
(AU071285) Dictyostelium discoideum slug cDNA, clone SSB132.       72   2e-19  3
(AC107670) Mus musculus chromosome 14, clone RP23-54K15, com...    50   0.16   1
(FP102563) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    50   0.16   1
(CU655951) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    50   0.16   1
(AC225959) Tupaia belangeri clone CH275-553P8, WORKING DRAFT...    50   0.16   1
(AC225956) Tupaia belangeri clone CH275-118H15, WORKING DRAF...    50   0.16   1
(EL498304) PFLAB1-M_F3_-P11A_A12_02.AB1 Blood stage Plasmodi...    38   0.28   2
(EE560957) BNZB_UP_064_D11_14MAY2004_089 Brassica napus BNZB...    46   0.49   2
(CR847531) Zebrafish DNA sequence from clone CH211-145N14 in...    36   0.62   5
(AC226792) Pan troglodytes chromosome X clone CH251-177J6 ma...    48   0.63   1
(AC230782) Bos taurus clone CH240-499F13, WORKING DRAFT SEQU...    48   0.63   1
(AC223917) Bos taurus clone CH240-454O16, WORKING DRAFT SEQU...    48   0.63   1
(AC223899) Bos taurus clone CH240-455E17, WORKING DRAFT SEQU...    48   0.63   1
(AC164759) Bos taurus clone CH240-155K9, *** SEQUENCING IN P...    48   0.63   1
(AY108161) Zea mays PCO128916 mRNA sequence.                       48   0.63   1
(FH808717) OSB_1198003xd16f1.ab1 OSB_1198 Nicotiana tabacum ...    48   0.63   1
(DV550124) 1000054-G01.GAD10-F UGI-Reseq Zea mays cDNA, mRNA...    48   0.63   1
(CX010180) io45a11.b1 Whole Heart Library (DOGEST5) Canis lu...    48   0.63   1
(CO718769) DG14-70g19 DG14-muscle Canis lupus familiaris cDN...    48   0.63   1
(CO718402) DG14-64j15 DG14-muscle Canis lupus familiaris cDN...    48   0.63   1
(CO708910) DG14-11e21 DG14-muscle Canis lupus familiaris cDN...    48   0.63   1
(CO702200) DG32-224i22 DG32-liver Canis lupus familiaris cDN...    48   0.63   1
(CO697989) DG32-126j11 DG32-liver Canis lupus familiaris cDN...    48   0.63   1
(CO693417) DG11-62b20 DG11-kidney Canis lupus familiaris cDN...    48   0.63   1
(CO691517) DG11-33j24 DG11-kidney Canis lupus familiaris cDN...    48   0.63   1
(CO686864) DG11-222h6 DG11-kidney Canis lupus familiaris cDN...    48   0.63   1
(CO680264) DG11-113a3 DG11-kidney Canis lupus familiaris cDN...    48   0.63   1
(CO680252) DG11-112n19 DG11-kidney Canis lupus familiaris cD...    48   0.63   1
(CO654299) DG10-1m18 DG10-liver Canis lupus familiaris cDNA ...    48   0.63   1
(AW424422) 707014B04.y1 707 - Mixed adult tissues from Walbo...    48   0.63   1
(AW355832) 707014B04.x1 707 - Mixed adult tissues from Walbo...    48   0.63   1
(GC633755) Sequence 37205 from patent US 7432049.                  38   0.96   2
(CQ692279) Sequence 37205 from Patent WO02070737.                  38   0.96   2
(AL929353) Plasmodium falciparum strain 3D7, chromosome 5, s...    42   1.1    6
(AE014827) Plasmodium falciparum 3D7 chromosome 14 section 1...    38   1.7    9
(ED005004) MUGQ_CH252P086E19Sp6_CP84_028 CHORI-252 Vervet Mo...    42   1.7    2
(EJ688814) 1092955237132 Global-Ocean-Sampling_GS-30-02-01-1...    36   1.7    2
(DX932266) MUGQ_CH252P086B21Sp6_CP88_047 CHORI-252 Vervet Mo...    42   2.0    2
(CR848029) Zebrafish DNA sequence from clone DKEY-46I24 in l...    46   2.5    1
(CR847782) Zebrafish DNA sequence from clone DKEY-149H12 in ...    46   2.5    1
(BX248130) Zebrafish DNA sequence from clone CH211-236E5 in ...    46   2.5    1
(AJ621744) Gallus gallus gene for hypothetical protein, BAC ...    46   2.5    1
(BV252832) S234P6396RC5.T0 EnglishShepherd Canis familiaris ...    46   2.5    1
(AL606746) Mouse DNA sequence from clone RP23-423J10 on chro...    46   2.5    1
(AC137708) Mus musculus chromosome 3, clone RP24-277H8, comp...    46   2.5    1
(AC130546) Mus musculus BAC clone RP24-303D11 from chromosom...    46   2.5    1
(GC697757) Sequence 13002 from patent US 6812339.                  46   2.5    1
(AC097486) Homo sapiens BAC clone RP11-213L8 from 4, complet...    46   2.5    1
(AC013444) Homo sapiens BAC clone RP11-470B22 from 2, comple...    46   2.5    1
(AC118854) Rattus norvegicus clone CH230-489M7, *** SEQUENCI...    46   2.5    1
(AC112038) Rattus norvegicus clone CH230-61D4, *** SEQUENCIN...    46   2.5    1
(AC107128) Rattus norvegicus clone CH230-133F6, *** SEQUENCI...    46   2.5    1
(CU074301) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.5    1
(AC223021) Bos taurus clone CH240-432B6, WORKING DRAFT SEQUE...    46   2.5    1
(AC172261) Bos taurus clone CH240-508E4, WORKING DRAFT SEQUE...    46   2.5    1
(AC168239) Bos taurus clone CH240-209H21, WORKING DRAFT SEQU...    46   2.5    1
(AC163805) Bos taurus clone CH240-147H11, *** SEQUENCING IN ...    46   2.5    1
(AC025003) Homo sapiens chromosome 2 clone RP11-206J24 map 2...    46   2.5    1
(AC012547) Homo sapiens clone RP11-11K1, WORKING DRAFT SEQUE...    46   2.5    1
(EJ311527) 1095403004024 Global-Ocean-Sampling_GS-27-01-01-1...    46   2.5    1
(ED948381) OA_CBa0159B10.r OA_CBa Oryza australiensis genomi...    46   2.5    1
(CC548788) CH240_432B6.TARBAC13P2 CHORI-240 Bos taurus genom...    46   2.5    1
(BX221953) Danio rerio genomic clone DKEY-242I13, genomic su...    46   2.5    1
(DR869616) JGI_CABG10702.fwd NIH_XGC_tropSto1 Xenopus (Silur...    46   2.5    1
(CX968639) JGI_CAAP3080.fwd NIH_XGC_tropInt1 Xenopus (Silura...    46   2.5    1
(CX442953) JGI_XZG8590.fwd NIH_XGC_tropGas7 Xenopus (Siluran...    46   2.5    1
(CJ269116) Mus musculus bone marrow macrophage cDNA, RIKEN f...    46   2.5    1
(FG290675) 1108793326078 New World Screwworm Egg 9261 ESTs C...    46   2.5    1
(CU683869) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   2.8    3
(AE014134) Drosophila melanogaster chromosome 2L, complete s...    32   3.3    2
(FF374614) TN-07.F_E10 Trichoplusia ni larval non-normalized...    40   3.5    2
(FF375661) TN-29-lipF_E12 Trichoplusia ni larval non-normali...    40   3.6    2
(FF375705) TN-30-lipF_B06 Trichoplusia ni larval non-normali...    40   3.7    2
(FF378292) TN38-pDNRlibR_B07 Trichoplusia ni larval non-norm...    40   3.7    2
(FF376687) TN-46-pDNRlibF_D05 Trichoplusia ni larval non-nor...    40   3.9    2
(FF375400) TN-25-libf_B09 Trichoplusia ni larval non-normali...    40   3.9    2
(FF375209) TN-21-libf_C03 Trichoplusia ni larval non-normali...    40   3.9    2
(FF374550) TN-06.F_G01 Trichoplusia ni larval non-normalized...    40   3.9    2
(CR940348) Theileria annulata genomic DNA chromosome 2.            34   4.0    2
(FF374275) TN-03.F_B12 Trichoplusia ni larval non-normalized...    40   4.2    2
(CF258149) 92 Trichoplusia ni fifth instar digestive system ...    40   4.2    2
(AL034557) Plasmodium falciparum MAL4P1.                           34   4.5    2
(AC115483) Drosophila melanogaster clone BACR20D18, complete...    32   4.7    2
(AC005139) Plasmodium falciparum chromosome 12, *** SEQUENCI...    40   4.9    9
(CQ588086) Sequence 15844 from Patent WO0171042.                   32   4.9    2
(BM273757) PfESToaa59b03.y1 Plasmodium falciparum 3D7 gameto...    42   5.1    2
(AC014600) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    32   5.2    2
(BM275981) PfESToaa88f01.y1 Plasmodium falciparum 3D7 gameto...    42   5.3    2
(CU914731) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   5.7    2
(CR388368) Zebrafish DNA sequence from clone DKEY-21E5 in li...    42   5.9    3
(GH246151) EST_eluc_evq_1020140 elucevq mixed_tissue Esox lu...    32   6.4    2
(GH246150) EST_eluc_evq_1001324 elucevq mixed_tissue Esox lu...    32   6.4    2
(FE132074) LV_HP_RA18E19r Litopenaeus vannamei hepatopancrea...    34   6.5    2
(FE132075) LV_HP_RA01F08f Litopenaeus vannamei hepatopancrea...    34   6.5    2
(FE132593) LV_HP_RA19I19f Litopenaeus vannamei hepatopancrea...    34   6.5    2
(FE132592) LV_HP_RA19E19r Litopenaeus vannamei hepatopancrea...    34   6.5    2
(AE001377) Plasmodium falciparum 3D7 chromosome 2 section 14...    38   6.6    2
(FE127508) LV_HP_RA07M18f Litopenaeus vannamei hepatopancrea...    34   6.6    2
(FE127507) LV_HP_RA07G18r Litopenaeus vannamei hepatopancrea...    34   6.6    2
(CB962896) AGENCOURT_13444999 NIH_MGC_187 Homo sapiens cDNA ...    42   6.8    2
(GD204966) G1045P341FE15.T1 Aplysia californica Pooled Norma...    38   7.0    2
(FG753345) G1146P335FP8.T0 Anolis carolinensis pooled normal...    34   7.3    2
(GD222269) G1045P343FO15.T1 Aplysia californica Pooled Norma...    38   7.3    2
(FG741400) G1145P325FG12.T0 Anolis carolinensis pooled norma...    34   7.5    2
(FG741448) G1145P325RG12.T0 Anolis carolinensis pooled norma...    34   7.6    2
(AC134661) Homo sapiens chromosome 15, clone CTD-3098H5, com...    36   8.6    4
(AC190400) Pan troglodytes BAC clone CH251-651K12 from chrom...    42   9.3    7
(AC168555) Strongylocentrotus purpuratus clone R3-3091F3, WO...    34   9.4    7
(AE014838) Plasmodium falciparum 3D7 chromosome 11 section 3...    34   9.4    8
(BX784025) Zebrafish DNA sequence from clone DKEY-72L14 in l...    36   9.7    6
(CU695199) Zebrafish DNA sequence from clone CH1073-473I7 in...    44   9.8    1
(CU571326) Zebrafish DNA sequence from clone CH73-311B20 in ...    44   9.8    1
(CT573264) Zebrafish DNA sequence from clone DKEY-262J3 in l...    44   9.8    1
(CR925742) Zebrafish DNA sequence from clone CH211-135H12 in...    44   9.8    1
(CR394540) Zebrafish DNA sequence from clone DKEYP-10E10 in ...    44   9.8    1
(BX296519) Zebrafish DNA sequence from clone CH211-278N7 in ...    44   9.8    1
(BX248320) Zebrafish DNA sequence from clone CH211-146A1 in ...    44   9.8    1
(BX248120) Zebrafish DNA sequence from clone CH211-160J6 in ...    44   9.8    1
(BT059020) Salmo salar clone ssal-rgf-520-248 Interferon reg...    44   9.8    1
(AB075928) Danio rerio CNR family (zCNRv1, zCNRv2, zCNRv3, z...    44   9.8    1
(AL844161) Mouse DNA sequence from clone RP23-343K11 on chro...    44   9.8    1
(AC170189) Mus musculus BAC clone RP23-103L12 from chromosom...    44   9.8    1
(AC127685) Mus musculus BAC clone RP24-176M3 from chromosome...    44   9.8    1
(AC126030) Mus musculus BAC clone RP23-452N11 from chromosom...    44   9.8    1
(AC123935) Mus musculus BAC clone RP23-354J3 from chromosome...    44   9.8    1
(AC205921) Pongo abelii BAC clone CH276-479M4 from chromosom...    44   9.8    1
(AC200676) Pongo abelii BAC clone CH276-308O15 from chromoso...    44   9.8    1
(EF146999) Populus trichocarpa clone WS01225_O08.                  44   9.8    1
(AC216450) Populus trichocarpa clone POP008-B21, complete se...    44   9.8    1
(AC184082) Populus trichocarpa clone Pop1-55P2, complete seq...    44   9.8    1
(CS374536) Sequence 639 from Patent WO2006034879.                  44   9.8    1
(CS374534) Sequence 637 from Patent WO2006034879.                  44   9.8    1
(AL831770) Human DNA sequence from clone RP13-297M11 on chro...    44   9.8    1
(AC109781) Homo sapiens 3 BAC RP11-317G9 (Roswell Park Cance...    44   9.8    1
(AC080033) Homo sapiens chromosome 8, clone RP11-885J16, com...    44   9.8    1
(AC008919) Homo sapiens chromosome 5 clone CTD-2276O24, comp...    44   9.8    1
(AC162082) Bos taurus clone CH240-110L19, WORKING DRAFT SEQU...    44   9.8    1
(AC158780) Mus musculus chromosome 1 clone RP23-182E14 map 1...    44   9.8    1
(AC152793) Bos taurus clone CH240-14J16, *** SEQUENCING IN P...    44   9.8    1
(AC128251) Rattus norvegicus clone CH230-523H15, *** SEQUENC...    44   9.8    1
(AC119027) Rattus norvegicus clone CH230-457H17, *** SEQUENC...    44   9.8    1
(AC106385) Rattus norvegicus clone CH230-135E6, *** SEQUENCI...    44   9.8    1
(AC097570) Rattus norvegicus clone CH230-67I19, *** SEQUENCI...    44   9.8    1
(CU993804) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   9.8    1
(CU929740) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   9.8    1
(CU914311) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   9.8    1
(CU681844) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   9.8    1
(CU550659) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   9.8    1
(CU468596) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   9.8    1
(CT027741) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    44   9.8    1
(CR940347) Theileria annulata genomic DNA chromosome 1 part 1.     44   9.8    1
(CR759823) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   9.8    1
(AC233417) Solanum tuberosum chromosome 1 clone RH066J10, **...    44   9.8    1
(AC232093) Solanum tuberosum chromosome 1 clone RH142J23, **...    44   9.8    1
(AC177784) Strongylocentrotus purpuratus clone R3-1002I8, WO...    44   9.8    1
(AC177783) Strongylocentrotus purpuratus clone R3-1002I24, W...    44   9.8    1
(AC174704) Bos taurus clone CH240-295D15, WORKING DRAFT SEQU...    44   9.8    1
(AC008811) Homo sapiens chromosome 5 clone CTD-2096K17, WORK...    44   9.8    1
(EF490848) Lepeophtheirus salmonis clone LS0029 60S ribosoma...    44   9.8    1
(ET937027) CHO_OF103xj15f2.ab1 CHO_OF Nicotiana tabacum geno...    44   9.8    1
(ER827253) POTKF24TF Solanum tuberosum RHPOTKEY BAC ends Sol...    44   9.8    1
(EI836318) POTE638TF Solanum tuberosum RHPOTKEY BAC ends Sol...    44   9.8    1
(DE882663) Macropus eugenii DNA, BAC clone: MEB1-056G16_F, 5...    44   9.8    1
(CE244618) tigr-gss-dog-17000373326801 Dog Library Canis lup...    44   9.8    1
(BX961009) Reverse strand read from insert in 5'HPRT inserti...    44   9.8    1
(BX181594) Danio rerio genomic clone DKEY-192E24, genomic su...    44   9.8    1
(BX176868) Danio rerio genomic clone DKEY-180M14, genomic su...    44   9.8    1
(DY890108) CeleSEQ7175 Cunninghamella elegans pBluescript (E...    44   9.8    1
(DY888436) CeleSEQ5414 Cunninghamella elegans pBluescript (E...    44   9.8    1
(DY887400) CeleSEQ3399 Cunninghamella elegans pBluescript (E...    44   9.8    1
(DW582480) EST_ssal_rgb2_46899 rgb2 Salmo salar cDNA clone s...    44   9.8    1
(DT783625) 125681139 TH1 Tribolium castaneum cDNA clone 19M5...    44   9.8    1
(DT483555) WS02522.B21_O21 PT-MB-N-A-15 Populus trichocarpa ...    44   9.8    1
(DT478492) WS02522.BR_O21 PT-MB-N-A-15 Populus trichocarpa c...    44   9.8    1
(DT472224) WS01225.BR.1_O08 PT-GT-FL-A-3 Populus trichocarpa...    44   9.8    1
(CV260002) WS02012.B21_O01 PTxN-IB-N-A-11 Populus trichocarp...    44   9.8    1
(CV236887) WS01225.B21.1_O08 PT-GT-FL-A-3 Populus trichocarp...    44   9.8    1
(CA060100) ssalrgb513012 mixed_tissue Salmo salar cDNA, mRNA...    44   9.8    1
(CA057629) ssalrgb507031 mixed_tissue Salmo salar cDNA, mRNA...    44   9.8    1
(CA054745) ssalrgb523343 mixed_tissue Salmo salar cDNA, mRNA...    44   9.8    1
(GE782417) EST_ssal_rgf_837272 ssalrgf mixed_tissue full-len...    44   9.8    1
(FK718589) pl_045-E10 Ilyanassa (snail) 0-48h Ilyanassa obso...    44   9.8    1
(FG682010) G1143P327RC15.T0 Anolis carolinensis pooled norma...    44   9.8    1

>(C93829) Dictyostelium discoideum slug cDNA, clone SSL764.
          Length = 686

 Score =  692 bits (349), Expect(3) = 0.0
 Identities = 349/349 (100%)
 Strand = Plus / Plus


Query: 324 gaacacaattgtcagacccagttaataaggttagccaaactcaacacacaggttgatgat 383
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94  gaacacaattgtcagacccagttaataaggttagccaaactcaacacacaggttgatgat 153


Query: 384 gttacaaatcccatgcccattgccgttggtaaaatgttgggtaatccaccaaaggtttcg 443
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 gttacaaatcccatgcccattgccgttggtaaaatgttgggtaatccaccaaaggtttcg 213


Query: 444 ggatttccgaggtagagggtgaaaatttgaaccagggtgctcaacaattccaaagggggg 503
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 ggatttccgaggtagagggtgaaaatttgaaccagggtgctcaacaattccaaagggggg 273


Query: 504 ctaatgaaatcaaacgtttaatgtggtgtggaaatttaaaacttactcttatcattattg 563
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ctaatgaaatcaaacgtttaatgtggtgtggaaatttaaaacttactcttatcattattg 333


Query: 564 cagtagttgtgctcttattggttgttattattgtaccaattgttctcaaatttacataaa 623
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 cagtagttgtgctcttattggttgttattattgtaccaattgttctcaaatttacataaa 393


Query: 624 tcaatttcaaaaaggggaaaacaacgttcatatatatatttaggaattc 672
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tcaatttcaaaaaggggaaaacaacgttcatatatatatttaggaattc 442

 Score =  167 bits (84), Expect(3) = 0.0
 Identities = 84/84 (100%)
 Strand = Plus / Plus


Query: 815 tcattttttatatacagtgcaaactatagtatttaaacaatagcacacaaatatatatat 874
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 tcattttttatatacagtgcaaactatagtatttaaacaatagcacacaaatatatatat 643


Query: 875 ttgtaaatataataacccaatatc 898
           ||||||||||||||||||||||||
Sbjct: 644 ttgtaaatataataacccaatatc 667

 Score =  109 bits (55), Expect(3) = 0.0
 Identities = 61/61 (100%)
 Strand = Plus / Plus


Query: 247 attgaatttggggggcancccggtggggtgctcttntattgtaaacttttgggatcttta 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17  attgaatttggggggcancccggtggggtgctcttntattgtaaacttttgggatcttta 76


Query: 307 a 307
           |
Sbjct: 77  a 77

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 933,510,941
Number of extensions: 61360555
Number of successful extensions: 5315940
Number of sequences better than 10.0: 207
Length of query: 959
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 935
Effective length of database: 99,340,224,878
Effective search space: 92883110260930
Effective search space used: 92883110260930
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.18
Homology vs Protein 
Query= Contig-U01797-1 (Contig-U01797-1Q) /CSM_Contig/Contig-U01797-1Q.Seq.d
         (959 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,064,668,167
Number of extensions: 17435466
Number of successful extensions: 35580
Number of sequences better than 10.0: 0
Number of HSP's gapped: 35565
Number of HSP's successfully gapped: 0
Length of query: 319
Length of database: 1,051,180,864
Length adjustment: 128
Effective length of query: 191
Effective length of database: 636,901,312
Effective search space: 121648150592
Effective search space used: 121648150592
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.42  gvh: 0.43  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.00
 nuc: 0.43  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: nuclear
	 20.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for Contig-U01797-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 17
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0