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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U11662-1
Contig ID Contig-U11662-1
Contig update 2002.12.18
Contig sequence 
>Contig-U11662-1 (Contig-U11662-1Q) /CSM_Contig/Contig-U11662-1Q.Seq.d
AATTGCCCTGNGGATGTCTCAGAAAAGAAAAGTAGTAATGATGAAAATTT
AGAGACCATAGTCCGAGTTTGCTTGCCCACGGAAACCTTTTCAAGAAATG
ATGGTGTCGTTAATAATAATAATAATAATGAAGATACAACCTCACGTTCA
AAGGAAATTACTCCTATTCCTCCTCCATTAGGTCTTGAGGAGATGGGTAT
CCCAATTACCAATGGTGAAGGTAATTTAATACAATGGAGTATTGATTTTG
ACGAGTTTGCAAATGCTTATTCATCACGTATTAAAAAGAAGCTCTTAAAG
GCCGGTTTTAGCAATCAACAATTAGAAGAAAGTTCAAGATCCTTCTTTGG
CCATGGGCAAGTGCTTGGCTCAACCAATGAATTAACAATTTATGATTCGA
GGTGGAATCCGATTAAGAGTCAACTAACAGATTCAAGTACACTCACTTTC
TTTGTGTCAACCGATTTAGATTCAGTAGAACAAATAACTGCAAAGATCGT
AAAACCAAAAGATATCTCGTTTGAAGGTGGTAAATTTTCAATAGAACCAA
ATAAAGATTTTTCTGTTCAAAAGCTTCNNNNNNNNN----------NNNN
NNNNNNGATGGTTGTCATCGCAAAAACAAAAAACCTAGACCCCAACCAAA
CATTTATAGTCTGGCGCTACCAGAGATTAAGTTTGTTGGGAAACCACACA
GAGTCGAACCTCCAAAATCAGGTGAAGTAATAGCAATAGCTAGAAAAATT
GATGGTGTGGAATGTAAAATAGCTGGCCTCTGCTTTTATAAATTATTTTT
ACTTTCCAATTATTTCAAGGCTGGAAGATCACATAACCCTAATAAACCAA
GTGAATATGATAGAAGTGGTGGTTTTCAAGTTGTCCTTACCATTAAAGAA
ACAAATGATCCCTCTAGCATTTTCTTGGTGAAACAATTTAGAAATTCTCA
ACTACATGGGAATCGTTTTGTTAATACTGCTCAAAGCTATGACGATAACG
ATTTGTTCCCCCATTTCGGTAATCATTTTACAATAGGTGGTGAATCTTAT
AAAAAAAATCAAAATAAATTATTAAGGTTCACAGATCAAAATATTGCTGA
AGTTATTTTGGCCTTAAAAGAGAATAGCTTATACTGTTTAAATGTATCAT
ACGACAATAAGAATTTAATTCAACCAAATGTGCCCCAATGCACATTTAAT
ACATAGTGATCTCTCACAATTGTCTGCGAGTTAAATCCATAATCAAATTT
TTAAATAATCA
Gap gap included
Contig length 1251
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 4002700
End point 4001465
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 2
Link to clone list U11662
List of clone(s) 

est1=CHC327F,1,577
est2=CHC327Z,578,1233
Translated Amino Acid sequence 
NCPXDVSEKKSSNDENLETIVRVCLPTETFSRNDGVVNNNNNNEDTTSRSKEITPIPPPL
GLEEMGIPITNGEGNLIQWSIDFDEFANAYSSRIKKKLLKAGFSNQQLEESSRSFFGHGQ
VLGSTNELTIYDSRWNPIKSQLTDSSTLTFFVSTDLDSVEQITAKIVKPKDISFEGGKFS
IEPNKDFSVQKLXXX---

---XXXDGCHRKNKKPRPQPNIYSLALPEIKFVGKPHRVEPPKSGEVIAIARKIDGVECK
IAGLCFYKLFLLSNYFKAGRSHNPNKPSEYDRSGGFQVVLTIKETNDPSSIFLVKQFRNS
QLHGNRFVNTAQSYDDNDLFPHFGNHFTIGGESYKKNQNKLLRFTDQNIAEVILALKENS
LYCLNVSYDNKNLIQPNVPQCTFNT**sltivcelnp*snf*ii
Translated Amino Acid sequence (All Frames) 
Frame A:
NCPXDVSEKKSSNDENLETIVRVCLPTETFSRNDGVVNNNNNNEDTTSRSKEITPIPPPL
GLEEMGIPITNGEGNLIQWSIDFDEFANAYSSRIKKKLLKAGFSNQQLEESSRSFFGHGQ
VLGSTNELTIYDSRWNPIKSQLTDSSTLTFFVSTDLDSVEQITAKIVKPKDISFEGGKFS
IEPNKDFSVQKLXXX---

---xxxxwlssqkqkt*tptkhl*sgatrd*vcwettqsrtskir*snsns*kn*wcgm*
nswplll*iiftfqlfqgwkit*p**tk*i**kwwfsscpyh*rnk*sl*hflgeti*kf
sttwesfc*ycskl*r*rfvppfr*sfynrw*il*kksk*iikvhrskyc*syfglkre*
lilfkciirq*efnstkcapmhi*yivishnclrvksiikflnn

Frame B:
ialxmsqkrkvvmmki*rp*sefacprkpfqemmvsliiiiimkiqphvqrklllfllh*
vlrrwvsqlpmvkvi*yngvliltslqmlihhvlkrss*rpvlainn*kkvqdpslamgk
claqpmn*qfmirggirlrvn*qiqvhslslcqpi*iq*nk*lqrs*nqkisrlkvvnfq
*nqikiflfksfxxx---

---XXXDGCHRKNKKPRPQPNIYSLALPEIKFVGKPHRVEPPKSGEVIAIARKIDGVECK
IAGLCFYKLFLLSNYFKAGRSHNPNKPSEYDRSGGFQVVLTIKETNDPSSIFLVKQFRNS
QLHGNRFVNTAQSYDDNDLFPHFGNHFTIGGESYKKNQNKLLRFTDQNIAEVILALKENS
LYCLNVSYDNKNLIQPNVPQCTFNT**sltivcelnp*snf*ii

Frame C:
lpxgclrkek****kfrdhspsllahgnlfkk*wcr*******rynltfkgnysysssir
s*gdgypnyqw*r*fntmey*f*rvckclfity*kealkgrf*qstirrkfkillwpwas
awlnq*innl*fevesd*estnrfkythflcvnrfrfsrtnnckdrktkrylv*rw*ifn
rtk*rffcskasxx---

---xxxmvviaktknldpnqtfivwryqrlsllgnhtesnlqnqvk**q*leklmvwnvk
*lasafinyfyfpiisrledhitlinqvnmievvvfklslplkkqmiplafsw*nnleil
nymgivllillkamtiticspisviilq*vvnlikkikiny*gsqikillklfwp*kria
ytv*myhttiri*fnqmcpnahlihsdlsqlsas*ihnqifk*s
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U11662-1 (Contig-U11662-1Q)
/CSM_Contig/Contig-U11662-1Q.Seq.d
         (1261 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U11662-1 (Contig-U11662-1Q) /CSM_Contig/Conti...  1197  0.0
Contig-U11679-1 (Contig-U11679-1Q) /CSM_Contig/Conti...    36  0.089
Contig-U08875-1 (Contig-U08875-1Q) /CSM_Contig/Conti...    36  0.089
Contig-U03719-1 (Contig-U03719-1Q) /CSM_Contig/Conti...    36  0.089
Contig-U13902-1 (Contig-U13902-1Q) /CSM_Contig/Conti...    34  0.35
Contig-U13529-1 (Contig-U13529-1Q) /CSM_Contig/Conti...    34  0.35
Contig-U12146-1 (Contig-U12146-1Q) /CSM_Contig/Conti...    34  0.35
Contig-U11608-1 (Contig-U11608-1Q) /CSM_Contig/Conti...    34  0.35
Contig-U10097-1 (Contig-U10097-1Q) /CSM_Contig/Conti...    34  0.35

>Contig-U11662-1 (Contig-U11662-1Q) /CSM_Contig/Contig-U11662-1Q.Seq.d
          Length = 1261

 Score = 1197 bits (604), Expect = 0.0
 Identities = 620/628 (98%)
 Strand = Plus / Plus

                                                                        
Query: 634  cctagaccccaaccaaacatttatagtctggcgctaccagagattaagtttgttgggaaa 693
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634  cctagaccccaaccaaacatttatagtctggcgctaccagagattaagtttgttgggaaa 693

                                                                        
Query: 694  ccacacagagtcgaacctccaaaatcaggtgaagtaatagcaatagctagaaaaattgat 753
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694  ccacacagagtcgaacctccaaaatcaggtgaagtaatagcaatagctagaaaaattgat 753

                                                                        
Query: 754  ggtgtggaatgtaaaatagctggcctctgcttttataaattatttttactttccaattat 813
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754  ggtgtggaatgtaaaatagctggcctctgcttttataaattatttttactttccaattat 813

                                                                        
Query: 814  ttcaaggctggaagatcacataaccctaataaaccaagtgaatatgatagaagtggtggt 873
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814  ttcaaggctggaagatcacataaccctaataaaccaagtgaatatgatagaagtggtggt 873

                                                                        
Query: 874  tttcaagttgtccttaccattaaagaaacaaatgatccctctagcattttcttggtgaaa 933
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874  tttcaagttgtccttaccattaaagaaacaaatgatccctctagcattttcttggtgaaa 933

                                                                        
Query: 934  caatttagaaattctcaactacatgggaatcgttttgttaatactgctcaaagctatgac 993
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 934  caatttagaaattctcaactacatgggaatcgttttgttaatactgctcaaagctatgac 993

                                                                        
Query: 994  gataacgatttgttcccccatttcggtaatcattttacaataggtggtgaatcttatnnn 1053
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 994  gataacgatttgttcccccatttcggtaatcattttacaataggtggtgaatcttataaa 1053

                                                                        
Query: 1054 nnnnntcaaaataaattattaaggttcacagatcaaaatattgctgaagttattttggcc 1113
                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1054 aaaaatcaaaataaattattaaggttcacagatcaaaatattgctgaagttattttggcc 1113

                                                                        
Query: 1114 ttaaaagagaatagcttatactgtttaaatgtatcatacgacaataagaatttaattcaa 1173
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1114 ttaaaagagaatagcttatactgtttaaatgtatcatacgacaataagaatttaattcaa 1173

                                                                        
Query: 1174 ccaaatgtgccccaatgcacatttaatacatagtgatctctcacaattgtctgcgagtta 1233
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1174 ccaaatgtgccccaatgcacatttaatacatagtgatctctcacaattgtctgcgagtta 1233

                                        
Query: 1234 aatccataatcaaatttttaaataatca 1261
            ||||||||||||||||||||||||||||
Sbjct: 1234 aatccataatcaaatttttaaataatca 1261


 Score =  888 bits (448), Expect = 0.0
 Identities = 448/448 (100%)
 Strand = Plus / Plus

                                                                       
Query: 130 gaagatacaacctcacgttcaaaggaaattactcctattcctcctccattaggtcttgag 189
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 gaagatacaacctcacgttcaaaggaaattactcctattcctcctccattaggtcttgag 189

                                                                       
Query: 190 gagatgggtatcccaattaccaatggtgaaggtaatttaatacaatggagtattgatttt 249
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 gagatgggtatcccaattaccaatggtgaaggtaatttaatacaatggagtattgatttt 249

                                                                       
Query: 250 gacgagtttgcaaatgcttattcatcacgtattaaaaagaagctcttaaaggccggtttt 309
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 gacgagtttgcaaatgcttattcatcacgtattaaaaagaagctcttaaaggccggtttt 309

                                                                       
Query: 310 agcaatcaacaattagaagaaagttcaagatccttctttggccatgggcaagtgcttggc 369
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 agcaatcaacaattagaagaaagttcaagatccttctttggccatgggcaagtgcttggc 369

                                                                       
Query: 370 tcaaccaatgaattaacaatttatgattcgaggtggaatccgattaagagtcaactaaca 429
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tcaaccaatgaattaacaatttatgattcgaggtggaatccgattaagagtcaactaaca 429

                                                                       
Query: 430 gattcaagtacactcactttctttgtgtcaaccgatttagattcagtagaacaaataact 489
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gattcaagtacactcactttctttgtgtcaaccgatttagattcagtagaacaaataact 489

                                                                       
Query: 490 gcaaagatcgtaaaaccaaaagatatctcgtttgaaggtggtaaattttcaatagaacca 549
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 gcaaagatcgtaaaaccaaaagatatctcgtttgaaggtggtaaattttcaatagaacca 549

                                       
Query: 550 aataaagatttttctgttcaaaagcttc 577
           ||||||||||||||||||||||||||||
Sbjct: 550 aataaagatttttctgttcaaaagcttc 577


 Score =  212 bits (107), Expect = 7e-55
 Identities = 110/110 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattgccctgnggatgtctcagaaaagaaaagtagtaatgatgaaaatttagagaccata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aattgccctgnggatgtctcagaaaagaaaagtagtaatgatgaaaatttagagaccata 60

                                                             
Query: 61  gtccgagtttgcttgcccacggaaaccttttcaagaaatgatggtgtcgt 110
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gtccgagtttgcttgcccacggaaaccttttcaagaaatgatggtgtcgt 110


>Contig-U11679-1 (Contig-U11679-1Q) /CSM_Contig/Contig-U11679-1Q.Seq.d
          Length = 1387

 Score = 36.2 bits (18), Expect = 0.089
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 542 tagaaccaaataaagatt 559
           ||||||||||||||||||
Sbjct: 895 tagaaccaaataaagatt 878


>Contig-U08875-1 (Contig-U08875-1Q) /CSM_Contig/Contig-U08875-1Q.Seq.d
          Length = 1355

 Score = 36.2 bits (18), Expect = 0.089
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 315 tcaacaattagaagaaag 332
           ||||||||||||||||||
Sbjct: 198 tcaacaattagaagaaag 215


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,188
Number of Sequences: 6905
Number of extensions: 13188
Number of successful extensions: 1346
Number of sequences better than 10.0: 122
length of query: 1261
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1245
effective length of database: 5,564,391
effective search space: 6927666795
effective search space used: 6927666795
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.25
Homology vs DNA 
Query= Contig-U11662-1 (Contig-U11662-1Q) /CSM_Contig/Contig-U11662-1Q.Seq.d
         (1261 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ363372) Dictyostelium discoideum cDNA clone:ddc26f07, 5' ...   888   0.0    2
(BJ377888) Dictyostelium discoideum cDNA clone:ddc26f07, 3' ...   827   0.0    3
(CL597903) OB__Ba0060A07.r OB__Ba Oryza brachyantha genomic ...    52   0.052  1
(FK070116) XABT129938.g1 Gateway compatible cien cDNA librar...    44   0.47   2
(AC104362) Homo sapiens chromosome 11, clone RP11-1023E15, c...    48   0.82   1
(CU284134) Equus caballus GSS, BAC clone CH241-444N6, T7 end...    48   0.82   1
(EH016248) USDA-FP_188768 Lysiphlebus testaceipes adult whol...    48   0.82   1
(EH010191) USDA-FP_183314 Lysiphlebus testaceipes adult whol...    48   0.82   1
(EH009746) USDA-FP_182913 Lysiphlebus testaceipes adult whol...    48   0.82   1
(AC202230) Pan troglodytes chromosome X clone CH251-56K3 map...    44   2.6    4
(BV345521) S230P6284RA2.T0 Rottweiler Canis familiaris STS g...    46   3.2    1
(AC148853) Otolemur garnettii clone CH256-459E18, WORKING DR...    46   3.2    1
(AC148548) Otolemur garnettii clone CH256-81G13, WORKING DRA...    46   3.2    1
(AC130246) Rattus norvegicus clone CH230-304P9, *** SEQUENCI...    46   3.2    1
(AC117001) Rattus norvegicus clone CH230-151C12, *** SEQUENC...    46   3.2    1
(AC111255) Rattus norvegicus clone CH230-35E16, *** SEQUENCI...    46   3.2    1
(AC093994) Rattus norvegicus clone CH230-48H17, *** SEQUENCI...    46   3.2    1
(AC193177) Pan troglodytes chromosome 18 clone CH251-299A9, ...    46   3.2    1
(CL563626) OB__Ba0026B13.f OB__Ba Oryza brachyantha genomic ...    46   3.2    1
(ES649590) NVPT168TR NVPP Nasonia vitripennis cDNA, mRNA seq...    46   3.2    1
(ES648726) NVPSN53TR NVPP Nasonia vitripennis cDNA, mRNA seq...    46   3.2    1
(ES646437) NVPRL34TR NVPP Nasonia vitripennis cDNA, mRNA seq...    46   3.2    1
(ES638332) NVPD287TR NVPA Nasonia vitripennis cDNA, mRNA seq...    46   3.2    1
(ES637780) NVPCO59TR NVPA Nasonia vitripennis cDNA, mRNA seq...    46   3.2    1
(ES635190) NVPB547TR NVPA Nasonia vitripennis cDNA, mRNA seq...    46   3.2    1
(ES615316) NGPAR52TR NGPA Nasonia giraulti cDNA, mRNA sequence.    46   3.2    1
(EC825523) SME00003909 esmbsro2 Sawyeria marylandensis cDNA,...    46   3.2    1
(EC819410) SME00003415 esmbsro2 Sawyeria marylandensis cDNA,...    46   3.2    1
(EV427765) 210773916 NVP Nasonia vitripennis cDNA clone 224M...    46   3.2    1
(EV418766) 210774852 NGP Nasonia giraulti cDNA clone 128E1 3...    46   3.2    1
(EV417913) 210768463 NGP Nasonia giraulti cDNA clone 128E1 5...    46   3.2    1
(AL031585) Human DNA sequence from clone RP6-227L5 on chromo...    44   3.5    3
(ET762045) CHO_OF106xi08f1.ab1 CHO_OF Nicotiana tabacum geno...    38   4.3    2
(EJ099896) 1095467006650 Global-Ocean-Sampling_GS-26-01-01-1...    32   8.0    2
(AC022302) Homo sapiens chromosome 15 clone CTD-2019H15 map ...    38   8.8    6
(AC195640) Pan troglodytes BAC clone CH251-439N5 from chromo...    44   9.1    3
(CU694984) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   9.7    7
(AC069411) Homo sapiens 3 BAC RP11-609K13 (Roswell Park Canc...    44   9.7    3

>(BJ363372) Dictyostelium discoideum cDNA clone:ddc26f07, 5' end,
           single read.
          Length = 577

 Score =  888 bits (448), Expect(2) = 0.0
 Identities = 448/448 (100%)
 Strand = Plus / Plus


Query: 130 gaagatacaacctcacgttcaaaggaaattactcctattcctcctccattaggtcttgag 189
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 gaagatacaacctcacgttcaaaggaaattactcctattcctcctccattaggtcttgag 189


Query: 190 gagatgggtatcccaattaccaatggtgaaggtaatttaatacaatggagtattgatttt 249
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 gagatgggtatcccaattaccaatggtgaaggtaatttaatacaatggagtattgatttt 249


Query: 250 gacgagtttgcaaatgcttattcatcacgtattaaaaagaagctcttaaaggccggtttt 309
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 gacgagtttgcaaatgcttattcatcacgtattaaaaagaagctcttaaaggccggtttt 309


Query: 310 agcaatcaacaattagaagaaagttcaagatccttctttggccatgggcaagtgcttggc 369
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 agcaatcaacaattagaagaaagttcaagatccttctttggccatgggcaagtgcttggc 369


Query: 370 tcaaccaatgaattaacaatttatgattcgaggtggaatccgattaagagtcaactaaca 429
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tcaaccaatgaattaacaatttatgattcgaggtggaatccgattaagagtcaactaaca 429


Query: 430 gattcaagtacactcactttctttgtgtcaaccgatttagattcagtagaacaaataact 489
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gattcaagtacactcactttctttgtgtcaaccgatttagattcagtagaacaaataact 489


Query: 490 gcaaagatcgtaaaaccaaaagatatctcgtttgaaggtggtaaattttcaatagaacca 549
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 gcaaagatcgtaaaaccaaaagatatctcgtttgaaggtggtaaattttcaatagaacca 549


Query: 550 aataaagatttttctgttcaaaagcttc 577
           ||||||||||||||||||||||||||||
Sbjct: 550 aataaagatttttctgttcaaaagcttc 577

 Score =  212 bits (107), Expect(2) = 0.0
 Identities = 110/110 (100%)
 Strand = Plus / Plus


Query: 1   aattgccctgnggatgtctcagaaaagaaaagtagtaatgatgaaaatttagagaccata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aattgccctgnggatgtctcagaaaagaaaagtagtaatgatgaaaatttagagaccata 60


Query: 61  gtccgagtttgcttgcccacggaaaccttttcaagaaatgatggtgtcgt 110
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gtccgagtttgcttgcccacggaaaccttttcaagaaatgatggtgtcgt 110

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,410,950,181
Number of extensions: 83734658
Number of successful extensions: 6286824
Number of sequences better than 10.0: 38
Length of query: 1261
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1237
Effective length of database: 97,308,875,965
Effective search space: 120371079568705
Effective search space used: 120371079568705
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.30
Homology vs Protein 
Query= Contig-U11662-1 (Contig-U11662-1Q) /CSM_Contig/Contig-U11662-1Q.Seq.d
         (1261 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE015450_425(AE015450|pid:none) Mycoplasma gallisepticum strain ...    40   0.23
CP001142_57(CP001142|pid:none) Phaeodactylum tricornutum CCAP 10...    38   0.88
BA000028_1977(BA000028|pid:none) Oceanobacillus iheyensis HTE831...    36   2.6
CS052812_1(CS052812|pid:none) Sequence 1 from Patent EP1512693. ...    36   2.6
AL844504_25(AL844504|pid:none) Plasmodium falciparum 3D7 chromos...    36   3.3
CP000884_805(CP000884|pid:none) Delftia acidovorans SPH-1, compl...    35   5.7
AE015450_198(AE015450|pid:none) Mycoplasma gallisepticum strain ...    35   7.5

>AE015450_425(AE015450|pid:none) Mycoplasma gallisepticum strain R
           complete genome.
          Length = 697

 Score = 39.7 bits (91), Expect = 0.23
 Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 4/130 (3%)
 Frame = +1

Query: 166 IPPPLGLEEMGIPITNGEGNLIQWSIDFDEFANAYSSRIKKKLLKAGFS--NQQLEESSR 339
           +P  L + +    IT     L +W  + D+F N      KK LL+A FS  N Q +  +
Sbjct: 220 VPEVLSVTKANEDITTAVSKLTEWKTNADKFNNFE----KKSLLRANFSSENSQTQPGNW 275

Query: 340 SFFGHGQVL--GSTNELTIYDSRWNPIKSQLTDSSTLTFFVSTDLDSVEQITAKIVKPKD 513
           SF G+   L  GS+N+  +  + WN  + Q+  +       STDL      +  +    +
Sbjct: 276 SFVGYSNNLNTGSSNQTNL--ANWNFAQRQVWSARA---DGSTDLVQNPTESTDVAWIYN 330

Query: 514 ISFEGGKFSI 543
           ++ EG K+++
Sbjct: 331 LAGEGAKYTL 340

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 2,068,553,542
Number of extensions: 44637132
Number of successful extensions: 91420
Number of sequences better than 10.0: 7
Number of HSP's gapped: 91388
Number of HSP's successfully gapped: 7
Length of query: 420
Length of database: 1,051,180,864
Length adjustment: 131
Effective length of query: 289
Effective length of database: 627,191,635
Effective search space: 181258382515
Effective search space used: 181258382515
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.43  gvh: 0.54  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: extracellular, including cell wall

>> prediction for Contig-U11662-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0