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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U01796-1
Contig ID Contig-U01796-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U01796-1 (Contig-U01796-1Q) /CSM_Contig/Contig-U01796-1Q.Seq.d
CTTAATAATAACCTTAATAATAACCTTAACAATAACCTTAATAATATTAA
TACAATTGATAAAAGTGTAGTTGAGGATATAGTAATGAAAACTCAAGATA
ATAATAATACTAATAATAATAATAATAATACCCAAGAAAATAATTCAACC
GAGAATAAAATTGTAAATGATGAAATAACAAAAACTAAAGGTAAAGGTAG
AGGTAGAAAAGCTAATAAAAATAAATTTAAAGAGGGTGATGAAGAAATGA
TGGAGGAGGAACAACAACAAAAAATAGAAAATGAAGAGAAAGAGATGATG
GATGAAGAGGAAGC----------TAAAGGAATATCAAACAACTTTTCAT
TGTACATTCGATGAGTTATCACAAATTAAAAGAATTAAAAGATCCAAAGA
ATTACCATTGGTAGATGATAAAGTTTTAAAGGAAACCATTGAGAGAGGTA
TGACCGATTTTCCAGCTCGTTTTCAAAGAGATAGTAAATCCCCAAATATA
TGGCACTCTTCTACAAAAACAATTCATTCAACTCGTTCAACTAGCTCAAG
AACACTTTCACCACCATTTCAATCAAATATTTTAATTAGATCAAAAAATA
AGCAAAGAAATATAAAATCAAATTCTGTTACAAATTTTTCAACAAAACAA
AAATAACAAAAAAAAAAAAAAAAAAATAGTTAACAACTTCGACTCTTTAA
CAATTTGTGAAACCACTAAAAAATCCAATAATTAAATATTCTCAATGAAT
ATTTTTGTATAGTCTTAATTATTGTATTTGTATTAAAAAAAAAAAAAAAA
ATTCCAAAAAAAGAAAAAAAAAAAGTTCCAAAAAAAAAAAAAATTCAACA
CTACAATTGTCAATATAACAATAATAAAATAAAATAAAATAAAAAAAATT
TATAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gap gap included
Contig length 937
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 4865569
End point 4864631
Strand (PLUS/MINUS) MINUS
Number of clones 2
Number of EST 3
Link to clone list U01796
List of clone(s) 

est1=SSH542F,1,315
est2=SSH542Z,316,799
est3=VSA746Z,319,939
Translated Amino Acid sequence 
LNNNLNNNLNNNLNNINTIDKSVVEDIVMKTQDNNNTNNNNNNTQENNSTENKIVNDEIT
KTKGKGRGRKANKNKFKEGDEEMMEEEQQQKIENEEKEMMDEEE---

---KEYQTTFHCTFDELSQIKRIKRSKELPLVDDKVLKETIERGMTDFPARFQRDSKSPN
IWHSSTKTIHSTRSTSSRTLSPPFQSNILIRSKNKQRNIKSNSVTNFSTKQK*qkkkkkn
s*qlrlfnnl*nh*kiq*lnilneyfcivliivfvlkkkkkipkkekkkvpkkkkiqhyn
cqynnnkik*nkknl*nkkkkkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
LNNNLNNNLNNNLNNINTIDKSVVEDIVMKTQDNNNTNNNNNNTQENNSTENKIVNDEIT
KTKGKGRGRKANKNKFKEGDEEMMEEEQQQKIENEEKEMMDEEE---

---*rnikqlfivhsmsyhklkelkdpknyhw*mikf*rkplrev*pifqlvfkeivnpq
iygtllqkqfiqlvqlaqehfhhhfnqif*ldqkiskei*nqillqifqqnknnkkkkkk
ivnnfdslticettkksnn*ifsmnifv*s*llyly*kkkkkfqkkkkkkfqkkkkfntt
ivnitiik*nkikkiyktkkkkkkkkkkkk

Frame B:
liitliitltitliiliqlikv*lri***klkiiiiliiiiiipkkiiqprikl*mmk*q
klkvkveveklikinlkrvmkk*wrrnnnkk*kmkrkr*wmkrk---

---kgisnnfslyir*vitn*kn*kiqritigr**sfkgnh*erydrfsssfskr**ipk
ymalfyknnsfnsfn*lkntfttisikyfn*ikk*akkykikfcykffnktkitkkkkkk
*lttstl*qfvkplknpiikysq*iflyslnycicikkkkknskkrkkksskkkknstlq
lsi*q**nkik*kkfikqkkkkkkkkkkkk

Frame C:
***p***p*q*p**y*yn**kcs*gysnensr***y******yprk*fnre*nck**nnk
n*r*r*r*ks**k*i*rg**rndgggtttknrk*rerddg*rgs---

---KEYQTTFHCTFDELSQIKRIKRSKELPLVDDKVLKETIERGMTDFPARFQRDSKSPN
IWHSSTKTIHSTRSTSSRTLSPPFQSNILIRSKNKQRNIKSNSVTNFSTKQK*qkkkkkn
s*qlrlfnnl*nh*kiq*lnilneyfcivliivfvlkkkkkipkkekkkvpkkkkiqhyn
cqynnnkik*nkknl*nkkkkkkkkkkkkk
own update 2004. 6. 7
Homology vs CSM-cDNA 
Query= Contig-U01796-1 (Contig-U01796-1Q)
/CSM_Contig/Contig-U01796-1Q.Seq.d
         (947 letters)

Database: CSM
           8361 sequences; 7,895,291 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U01796-1 (Contig-U01796-1Q) /CSM_Contig/Conti...   985  0.0
Contig-U12168-1 (Contig-U12168-1Q) /CSM_Contig/Conti...    48  2e-05
Contig-U04785-1 (Contig-U04785-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U02712-1 (Contig-U02712-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U13636-1 (Contig-U13636-1Q) /CSM_Contig/Conti...    38  0.024
Contig-U12756-1 (Contig-U12756-1Q) /CSM_Contig/Conti...    38  0.024
Contig-U11705-1 (Contig-U11705-1Q) /CSM_Contig/Conti...    38  0.024
Contig-U11421-1 (Contig-U11421-1Q) /CSM_Contig/Conti...    38  0.024
Contig-U11098-1 (Contig-U11098-1Q) /CSM_Contig/Conti...    38  0.024
Contig-U11213-1 (Contig-U11213-1Q) /CSM_Contig/Conti...    32  1.5

>Contig-U01796-1 (Contig-U01796-1Q) /CSM_Contig/Contig-U01796-1Q.Seq.d
          Length = 947

 Score =  985 bits (497), Expect = 0.0
 Identities = 527/527 (100%)
 Strand = Plus / Plus

                                                                       
Query: 131 cccaagaaaataattcaaccgagaataaaattgtaaatgatgaaataacaaaaactaaag 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 cccaagaaaataattcaaccgagaataaaattgtaaatgatgaaataacaaaaactaaag 190

                                                                       
Query: 191 gtaaaggtagaggtagaaaagctaataaaaataaatttaaagagggtgatgaagaaatga 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 gtaaaggtagaggtagaaaagctaataaaaataaatttaaagagggtgatgaagaaatga 250

                                                                       
Query: 251 tggaggaggaacaacaacaaaaaatagaaaatgaagagaaagagatgatggatgaagagg 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tggaggaggaacaacaacaaaaaatagaaaatgaagagaaagagatgatggatgaagagg 310

                                                                       
Query: 311 aagcnnnnnnnnnntaaaggaatatcaaacaacttttcattgtacattcgatgagttatc 370
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 aagcnnnnnnnnnntaaaggaatatcaaacaacttttcattgtacattcgatgagttatc 370

                                                                       
Query: 371 acaaattaaaagaattaaaagatccaaagaattaccattggtagatgataaagttttaaa 430
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 acaaattaaaagaattaaaagatccaaagaattaccattggtagatgataaagttttaaa 430

                                                                       
Query: 431 ggaaaccattgagagaggtatgaccgattttccagctcgttttcaaagagatagtaaatc 490
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ggaaaccattgagagaggtatgaccgattttccagctcgttttcaaagagatagtaaatc 490

                                                                       
Query: 491 cccaaatatatggcactcttctacaaaaacaattcattcaactcgttcaactagctcaag 550
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 cccaaatatatggcactcttctacaaaaacaattcattcaactcgttcaactagctcaag 550

                                                                       
Query: 551 aacactttcaccaccatttcaatcaaatattttaattagatcaaaaaataagcaaagaaa 610
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 aacactttcaccaccatttcaatcaaatattttaattagatcaaaaaataagcaaagaaa 610

                                                          
Query: 611 tataaaatcaaattctgttacaaatttttcaacaaaacaaaaataac 657
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tataaaatcaaattctgttacaaatttttcaacaaaacaaaaataac 657


 Score =  214 bits (108), Expect = 2e-55
 Identities = 108/108 (100%)
 Strand = Plus / Plus

                                                                       
Query: 677 tagttaacaacttcgactctttaacaatttgtgaaaccactaaaaaatccaataattaaa 736
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tagttaacaacttcgactctttaacaatttgtgaaaccactaaaaaatccaataattaaa 736

                                                           
Query: 737 tattctcaatgaatatttttgtatagtcttaattattgtatttgtatt 784
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 tattctcaatgaatatttttgtatagtcttaattattgtatttgtatt 784


 Score = 89.7 bits (45), Expect = 7e-18
 Identities = 45/45 (100%)
 Strand = Plus / Plus

                                                       
Query: 53 caattgataaaagtgtagttgaggatatagtaatgaaaactcaag 97
          |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53 caattgataaaagtgtagttgaggatatagtaatgaaaactcaag 97


 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 844 ttcaacactacaattgtcaatataac 869
           ||||||||||||||||||||||||||
Sbjct: 844 ttcaacactacaattgtcaatataac 869


>Contig-U12168-1 (Contig-U12168-1Q) /CSM_Contig/Contig-U12168-1Q.Seq.d
          Length = 2480

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                            
Query: 260  aacaacaacaaaaaatagaaaatgaagagaaa 291
            ||||||||||| |||||||||| |||||||||
Sbjct: 1358 aacaacaacaacaaatagaaaaagaagagaaa 1389


 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 260 aacaacaacaaaaaatagaaaatgaagagaaa 291
           ||||||||||| |||||||||| |||||||||
Sbjct: 640 aacaacaacaacaaatagaaaaagaagagaaa 671


>Contig-U04785-1 (Contig-U04785-1Q) /CSM_Contig/Contig-U04785-1Q.Seq.d
          Length = 1280

 Score = 40.1 bits (20), Expect = 0.006
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 373 aaattaaaagaattaaaaga 392
           ||||||||||||||||||||
Sbjct: 62  aaattaaaagaattaaaaga 81


  Database: CSM
    Posted date:  Jun 7, 2004  8:33 AM
  Number of letters in database: 7,895,291
  Number of sequences in database:  8361
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 30,769
Number of Sequences: 8361
Number of extensions: 30769
Number of successful extensions: 3415
Number of sequences better than 10.0: 385
length of query: 947
length of database: 7,895,291
effective HSP length: 16
effective length of query: 931
effective length of database: 7,761,515
effective search space: 7225970465
effective search space used: 7225970465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 5. 7
Homology vs DNA 
Query= Contig-U01796-1 (Contig-U01796-1Q) /CSM_Contig/Contig-U01796-1Q.Seq.d
         (947 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU038306) Dictyostelium discoideum slug cDNA, clone SSH542.      509   0.0    2
(AU261706) Dictyostelium discoideum vegetative cDNA clone:VS...   507   0.0    2
(AU073557) Dictyostelium discoideum slug cDNA, clone SSH542.       70   2e-07  1
(CZ864760) OC__Ba0259N10.f OC__Ba Oryza coarctata genomic cl...    52   0.040  1
(AC186452) Microcebus murinus clone CH257-58G14, WORKING DRA...    50   0.16   1
(CU981669) Brassica napus GSS, clone JBnB125B07, end read, p...    50   0.16   1
(AM729656) Cucumis melo subsp. agrestis EST, clone A_39-C12-...    42   0.16   2
(AL138651) Arabidopsis thaliana DNA chromosome 3, BAC clone ...    34   0.36   2
(AQ515100) HS_5199_A1_C10_SP6E RPCI-11 Human Male BAC Librar...    38   0.46   2
(AC192933) Pan troglodytes BAC clone CH251-490G6 from chromo...    48   0.62   1
(AL136362) Human DNA sequence from clone RP13-136L2 on chrom...    48   0.62   1
(CT943653) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.62   1
(AC192510) Cavia porcellus clone CH234-497A8, WORKING DRAFT ...    48   0.62   1
(AC189897) Cavia porcellus clone CH234-489N12, WORKING DRAFT...    48   0.62   1
(AC004071) Homo sapiens, *** SEQUENCING IN PROGRESS ***.           48   0.62   1
(AY066643) Schmidtea mediterranea clone H.22.1c(T3) unknown ...    48   0.62   1
(AU061873) Dictyostelium discoideum slug cDNA, clone SLG418.       48   0.62   1
(AU061782) Dictyostelium discoideum slug cDNA, clone SLF860.       48   0.62   1
(AU061017) Dictyostelium discoideum slug cDNA, clone SLC633.       48   0.62   1
(BJ414802) Dictyostelium discoideum cDNA clone:ddv20p07, 5' ...    48   0.62   1
(BJ414014) Dictyostelium discoideum cDNA clone:ddv17b23, 5' ...    48   0.62   1
(BJ413874) Dictyostelium discoideum cDNA clone:ddv17b12, 5' ...    48   0.62   1
(CP000099) Methanosarcina barkeri str. Fusaro, complete genome.    48   0.62   1
(AM477122) Vitis vinifera contig VV78X133894.9, whole genome...    46   0.64   3
(AC168030) Bos taurus clone CH240-203K18, WORKING DRAFT SEQU...    34   1.3    2
(FG519627) 030630KAZB015161HT (KAZB) Actinidia chinensis you...    36   1.6    2
(AC224218) Bos taurus clone CH240-446J8, WORKING DRAFT SEQUE...    44   1.9    3
(AC179451) Strongylocentrotus purpuratus clone R3-63F24, WOR...    46   2.1    5
(AC207083) Pongo abelii BAC clone CH276-459F20 from chromoso...    46   2.5    1
(AC195527) Pan troglodytes BAC clone CH251-315H19 from chrom...    46   2.5    1
(AC186768) Pongo abelii chromosome UNK clone CH276-59H12, co...    46   2.5    1
(AP008212) Oryza sativa (japonica cultivar-group) genomic DN...    46   2.5    1
(AP004278) Oryza sativa Japonica Group genomic DNA, chromoso...    46   2.5    1
(EA699109) Sequence 77988 from patent US 7365185.                  46   2.5    1
(DD349238) Novel nucleic acid sequences and proteins of tumo...    46   2.5    1
(AX951701) Sequence 18 from Patent WO03093310.                     46   2.5    1
(AX951695) Sequence 12 from Patent WO03093310.                     46   2.5    1
(AL450083) Human DNA sequence from clone RP11-514P7 on chrom...    46   2.5    1
(AL135905) Human DNA sequence from clone RP5-1148A21 on chro...    46   2.5    1
(AC010883) Homo sapiens BAC clone RP11-339H12 from 2, comple...    46   2.5    1
(AC148185) Pongo abelii clone CH253-154P17, WORKING DRAFT SE...    46   2.5    1
(AC146490) Macaca mulatta clone CH250-314G9, WORKING DRAFT S...    46   2.5    1
(CU929693) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.5    1
(CU681823) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.5    1
(CU466298) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.5    1
(AC172420) Strongylocentrotus purpuratus clone R3-14I21, WOR...    46   2.5    1
(AC022656) Homo sapiens clone RP11-28P11, WORKING DRAFT SEQU...    46   2.5    1
(AZ164905) SP_0078_A1_E11_T7A Strongylocentrotus purpuratus,...    46   2.5    1
(AZ149615) SP_0047_B2_E01_SP6E Strongylocentrotus purpuratus...    46   2.5    1
(AQ256008) nbxb0014H12r CUGI Rice BAC Library Oryza sativa J...    46   2.5    1
(EJ463437) 1095383000383 Global-Ocean-Sampling_GS-28-01-01-1...    46   2.5    1
(EI340946) GM_WBc0084M04.f GM_WBc Glycine max genomic clone ...    46   2.5    1
(DX521834) GH_MBb0026K09f GH_MBb Gossypium hirsutum genomic ...    46   2.5    1
(DE207649) Branchiostoma floridae DNA, clone: CH302-095_P22_...    46   2.5    1
(DE195282) Branchiostoma floridae DNA, clone: CH302-077_O03_...    46   2.5    1
(DE040231) Branchiostoma floridae DNA, clone: CH302-063G10.R...    46   2.5    1
(CR107648) Reverse strand read from insert in 5'HPRT inserti...    46   2.5    1
(CL793788) OR_CBa0003A14.r OR_CBa Oryza rufipogon genomic cl...    46   2.5    1
(CL762716) OR_BBa0132P13.r OR_BBa Oryza nivara genomic clone...    46   2.5    1
(CL725142) OR_BBa0054P10.f OR_BBa Oryza nivara genomic clone...    46   2.5    1
(EH049642) THLCK-2299 cDNA library of Tamarix hispida leaves...    46   2.5    1
(AI868883) wc49f02.x1 NCI_CGAP_Pr28 Homo sapiens cDNA clone ...    46   2.5    1
(DV084629) 327-384-13_C12_T7 Nematostella vectensis normaliz...    40   3.0    2
(AC179242) Strongylocentrotus purpuratus clone R3-42F2, WORK...    44   4.2    2
(CU424467) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    32   4.6    2
(AC026490) Homo sapiens clone RP11-30N7, WORKING DRAFT SEQUE...    32   4.7    2
(AC105273) Homo sapiens chromosome 1 clone RP4-716B13, compl...    32   4.7    2
(AJ812236) Dictyostelium discoideum mRNA for diaphanous-rela...    34   5.7    3
(AC213823) Oryza minuta clone OM__Ba0152K21, complete sequence.    42   5.7    4
(AM446322) Vitis vinifera contig VV78X210381.15, whole genom...    42   5.9    3
(FH585181) CHO_OF4371xa17r1.ab1 CHO_OF4 Nicotiana tabacum ge...    32   6.2    2
(FH573535) CHO_OF4369xc16r1.ab1 CHO_OF4 Nicotiana tabacum ge...    32   6.2    2
(CU695177) Zebrafish DNA sequence from clone CH73-367J22.          34   6.9    5
(DW264766) UI-S-GN1-abp-n-23-0-UI.s1 UI-S-GN1 Euprymna scolo...    42   7.2    2
(EJ776333) 1093004100327 Global-Ocean-Sampling_GS-30-02-01-1...    40   7.3    2
(FF070173) G1045P311RH13.T0 Aplysia californica Pooled Norma...    36   7.3    2
(AC189270) Brassica rapa subsp. pekinensis clone KBrB023F24,...    40   8.3    5
(ED799302) MG__Ba0053H03r MG__Ba Mimulus guttatus genomic, g...    42   8.6    2
(U42832) Caenorhabditis elegans cosmid F01E11, complete sequ...    36   9.5    4
(CR926137) Zebrafish DNA sequence from clone DKEY-158A20 in ...    44   9.7    1
(CR391977) Zebrafish DNA sequence from clone DKEYP-73B11 in ...    44   9.7    1
(BX323861) Zebrafish DNA sequence from clone CH211-209F23 in...    44   9.7    1
(BX284666) Zebrafish DNA sequence from clone CH211-190K17 in...    44   9.7    1
(AL935282) Zebrafish DNA sequence from clone CH211-281O21 in...    44   9.7    1
(BV618740) S217P60437FA6.T0 Noemie Pan troglodytes troglodyt...    44   9.7    1
(BV046577) S212P6913FH5.T0 CZECHII/Ei Mus musculus STS genom...    44   9.7    1
(AL645907) Mouse DNA sequence from clone RP23-9N7 on chromos...    44   9.7    1
(AL589699) Mouse DNA sequence from clone RP23-92G13 on chrom...    44   9.7    1
(AC161510) Mus musculus chromosome 5, clone RP23-7M16, compl...    44   9.7    1
(AC161197) Mus musculus chromosome 7, clone RP23-179K11, com...    44   9.7    1
(AC132954) Mus musculus BAC clone RP24-210F23 from 12, compl...    44   9.7    1
(AC131320) Mus musculus chromosome 12, clone RP23-398E18, co...    44   9.7    1
(AC107774) Mus musculus chromosome 5, clone RP23-99A9, compl...    44   9.7    1
(AC205857) Pongo abelii BAC clone CH276-462C5 from chromosom...    44   9.7    1
(AC205044) Pongo abelii BAC clone CH276-486J7 from chromosom...    44   9.7    1
(EU169849) Sargassum sp. SEY1F tRNA-Trp gene, partial sequen...    44   9.7    1
(AM451675) Vitis vinifera contig VV78X123674.1, whole genome...    44   9.7    1
(AM428326) Vitis vinifera contig VV78X019797.8, whole genome...    44   9.7    1
(FB596527) Sequence 12250 from Patent WO2004081186.                44   9.7    1
(EA427602) Sequence 77 from patent US 7332281.                     44   9.7    1
(DL007621) NOVEL THERAPEUTIC TARGETS IN CANCER.                    44   9.7    1
(CS741926) Sequence 9922 from Patent WO2005083127.                 44   9.7    1
(CQ870165) Sequence 586 from Patent WO2004074320.                  44   9.7    1
(GC737780) Sequence 53025 from patent US 6812339.                  44   9.7    1
(GC698029) Sequence 13274 from patent US 6812339.                  44   9.7    1
(AL590328) Human chromosome 14 DNA sequence BAC R-818K5 of l...    44   9.7    1
(AL358777) Human DNA sequence from clone RP11-421M1 on chrom...    44   9.7    1
(AL355879) Human DNA sequence from clone RP11-520F9 on chrom...    44   9.7    1
(AL353734) Human DNA sequence from clone RP11-430K10 on chro...    44   9.7    1
(AC131952) Homo sapiens BAC clone RP11-617H11 from 4, comple...    44   9.7    1
(AC010223) Homo sapiens chromosome 5 clone CTC-270D5, comple...    44   9.7    1
(AC008688) Homo sapiens chromosome 5 clone CTB-60P23, comple...    44   9.7    1
(AC007057) Homo sapiens chromosome 14 clone containing genes...    44   9.7    1
(AC004776) Homo sapiens chromosome 5, BAC clone 173m17 (LBNL...    44   9.7    1
(AC156877) Bos taurus clone CH240-63J7, WORKING DRAFT SEQUEN...    44   9.7    1
(AC156414) Bos taurus clone CH240-53D21, WORKING DRAFT SEQUE...    44   9.7    1
(AC152763) Bos taurus clone CH240-15A16, WORKING DRAFT SEQUE...    44   9.7    1
(AC152635) Bos taurus clone CH240-16G11, WORKING DRAFT SEQUE...    44   9.7    1
(AC119669) Rattus norvegicus chromosome 1 clone RP32-288C19 ...    44   9.7    1
(AC118667) Rattus norvegicus chromosome 1 clone RP32-100G3 m...    44   9.7    1
(AC107497) Rattus norvegicus clone CH230-104G10, *** SEQUENC...    44   9.7    1
(FP102106) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   9.7    1
(CU914732) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   9.7    1
(AC084746) Mus musculus clone RP23-310P14, WORKING DRAFT SEQ...    44   9.7    1
(AC079583) Mus musculus clone RP23-9G1, WORKING DRAFT SEQUEN...    44   9.7    1
(AC079521) Mus musculus clone RP23-313M20, WORKING DRAFT SEQ...    44   9.7    1
(AC044871) Homo sapiens chromosome 5 clone RP11-377K5 map 5,...    44   9.7    1
(CU467649) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   9.7    1
(CT963088) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   9.7    1
(CT583640) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   9.7    1
(CT005247) Leishmania major chromosome 8 strain Friedlin, co...    44   9.7    1
(AL357077) Human DNA sequence *** SEQUENCING CANCELLED *** f...    44   9.7    1
(AC221481) Bos taurus clone CH240-409I23, WORKING DRAFT SEQU...    44   9.7    1
(AC214482) Zea mays chromosome UNKNOWN clone CH201-214F17; Z...    44   9.7    1
(AC202190) Zea mays chromosome unknown clone CH201-162F4; ZM...    44   9.7    1
(AC200374) Nomascus leucogenys leucogenys clone CH271-297G2,...    44   9.7    1
(AC196611) Otolemur garnettii clone CH256-9P22, WORKING DRAF...    44   9.7    1
(AC192914) Atelerix albiventris clone LB4-505H1, WORKING DRA...    44   9.7    1
(AC180657) Strongylocentrotus purpuratus clone R3-3089E14, W...    44   9.7    1
(AC177891) Zea mays clone CH201-209B16; gnl|WUGSC|CH201-209B...    44   9.7    1
(AC175144) Bos taurus clone CH240-524F9, WORKING DRAFT SEQUE...    44   9.7    1
(AC173538) Bos taurus clone CH240-252J7, WORKING DRAFT SEQUE...    44   9.7    1
(AC170707) Atelerix albiventris clone LB4-208I1, WORKING DRA...    44   9.7    1
(AC167317) Sorex araneus clone SA_Ba-55E16, WORKING DRAFT SE...    44   9.7    1
(AC024458) Homo sapiens chromosome 13 clone RP11-172N12 map ...    44   9.7    1
(AK309591) Homo sapiens cDNA, FLJ99632.                            44   9.7    1
(AK169548) Mus musculus 3 days neonate thymus cDNA, RIKEN fu...    44   9.7    1
(FH277502) CHO_OF4161xe14r1.ab1 CHO_OF4 Nicotiana tabacum ge...    44   9.7    1
(ET376277) S0068O04_SP6 CHORI-214 Salmo salar genomic clone ...    44   9.7    1
(ER496559) 1093015350609 Global-Ocean-Sampling_GS-35-01-01-1...    44   9.7    1
(EJ777524) 1093010224018 Global-Ocean-Sampling_GS-30-02-01-1...    44   9.7    1
(EJ769542) 1092964401106 Global-Ocean-Sampling_GS-30-02-01-1...    44   9.7    1
(EJ122265) 1092343378853 Global-Ocean-Sampling_GS-27-01-01-1...    44   9.7    1
(EI761918) CHORI510R313C13TR BAC library from the primary ov...    44   9.7    1
(EI756605) CHORI520R15B06TR BAC library from the breast cell...    44   9.7    1
(DX864642) ZMMBLi0003J17.f ZMMBLi Zea mays genomic clone ZMM...    44   9.7    1
(DX528863) GH_MBb0043K16f GH_MBb Gossypium hirsutum genomic ...    44   9.7    1
(DU315977) 1098313128054 CHORI-243 Ovis aries genomic clone ...    44   9.7    1
(CZ523094) GMW2-38M20a.g2 GMW2 Glycine max genomic, genomic ...    44   9.7    1
(AG689209) Macaca fuscata fuscata DNA, clone: MSB2-121O20_R,...    44   9.7    1
(CG102698) PUFXX44TB ZM_0.6_1.0_KB Zea mays genomic clone ZM...    44   9.7    1
(CE450102) tigr-gss-dog-17000319091323 Dog Library Canis lup...    44   9.7    1
(BZ391033) EINCN17TF EI_10_12_KB Entamoeba invadens genomic ...    44   9.7    1
(BZ091530) CH230-222A6.TV CHORI-230 Segment 1 Rattus norvegi...    44   9.7    1
(EB501091) 1099435314449 12-DrosW-norm-1P5Kb Drosophila will...    44   9.7    1
(EB490273) 1099341360042 12-DrosW-norm-1P5Kb Drosophila will...    44   9.7    1
(DY885884) CeleSEQ976 Cunninghamella elegans pBluescript (Ec...    44   9.7    1
(DY636817) PU1_plate42_E19 PU1 Prunus persica cDNA similar t...    44   9.7    1
(AU269611) Dictyostelium discoideum vegetative cDNA clone:VS...    44   9.7    1
(AU269610) Dictyostelium discoideum vegetative cDNA clone:VS...    44   9.7    1
(DN422167) LIB4216-017-R1-K1-A1 LIB4216 Canis lupus familiar...    44   9.7    1
(DN420627) LIB4216-002-Q1-K1-B2 LIB4216 Canis lupus familiar...    44   9.7    1
(DN415735) LIB4215-074-R1-K1-C6 LIB4215 Canis lupus familiar...    44   9.7    1
(DN412682) LIB4215-048-R1-K1-F3 LIB4215 Canis lupus familiar...    44   9.7    1
(DN401517) LIB4004-013-Q1-K1-D10 LIB4004 Canis lupus familia...    44   9.7    1
(AU022864) Mus musculus unfertilized egg cDNA 3'-end sequenc...    44   9.7    1
(CO613734) DG9-129b15 DG9-ovary Canis lupus familiaris cDNA ...    44   9.7    1
(CO358913) DR_ATE_ORE41_F11 adult testis ORESTES (TLL) Danio...    44   9.7    1
(CO357900) DR_ATE_ORE29_E01 adult testis ORESTES (TLL) Danio...    44   9.7    1
(AJ816765) Bos sp. EST, clone C0005209c5.                          44   9.7    1
(BQ682035) AGENCOURT_8241084 NIH_MGC_112 Homo sapiens cDNA c...    44   9.7    1
(BF390900) UI-R-CA1-bci-g-10-0-UI.s1 UI-R-CA1 Rattus norvegi...    44   9.7    1

>(AU038306) Dictyostelium discoideum slug cDNA, clone SSH542.
          Length = 484

 Score =  509 bits (257), Expect(2) = 0.0
 Identities = 264/267 (98%)
 Strand = Plus / Plus


Query: 325 taaaggaatatcaaacaacttttcattgtacattcgatgagttatcacaaattaaaagaa 384
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   taaaggaatatcaaacaacttttcattgtacattcgatgagttatcacaaattaaaagaa 60


Query: 385 ttaaaagatccaaagaattaccattggtagatgataaagttttaaaggaaaccattgaga 444
           |||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 61  ttaaaagatcaaangaattaccattggtagatgataaagttttaaaggaanccattgaga 120


Query: 445 gaggtatgaccgattttccagctcgttttcaaagagatagtaaatccccaaatatatggc 504
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gaggtatgaccgattttccagctcgttttcaaagagatagtaaatccccaaatatatggc 180


Query: 505 actcttctacaaaaacaattcattcaactcgttcaactagctcaagaacactttcaccac 564
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 actcttctacaaaaacaattcattcaactcgttcaactagctcaagaacactttcaccac 240


Query: 565 catttcaatcaaatattttaattagat 591
           |||||||||||||||||||||||||||
Sbjct: 241 catttcaatcaaatattttaattagat 267

 Score =  214 bits (108), Expect(2) = 0.0
 Identities = 108/108 (100%)
 Strand = Plus / Plus


Query: 677 tagttaacaacttcgactctttaacaatttgtgaaaccactaaaaaatccaataattaaa 736
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 tagttaacaacttcgactctttaacaatttgtgaaaccactaaaaaatccaataattaaa 412


Query: 737 tattctcaatgaatatttttgtatagtcttaattattgtatttgtatt 784
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tattctcaatgaatatttttgtatagtcttaattattgtatttgtatt 460

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 760,884,572
Number of extensions: 54033830
Number of successful extensions: 5227686
Number of sequences better than 10.0: 184
Length of query: 947
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 923
Effective length of database: 99,340,224,878
Effective search space: 91691027562394
Effective search space used: 91691027562394
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.18
Homology vs Protein 
Query= Contig-U01796-1 (Contig-U01796-1Q) /CSM_Contig/Contig-U01796-1Q.Seq.d
         (947 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 632,925,233
Number of extensions: 8057153
Number of successful extensions: 18505
Number of sequences better than 10.0: 0
Number of HSP's gapped: 18493
Number of HSP's successfully gapped: 0
Length of query: 315
Length of database: 1,051,180,864
Length adjustment: 128
Effective length of query: 187
Effective length of database: 636,901,312
Effective search space: 119100545344
Effective search space used: 119100545344
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.66  gvh: 0.09  alm: 0.55  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall

>> prediction for Contig-U01796-1 is nuc
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0