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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U11652-1
Contig ID Contig-U11652-1
Contig update 2002.12.18
Contig sequence 
>Contig-U11652-1 (Contig-U11652-1Q) /CSM_Contig/Contig-U11652-1Q.Seq.d
ACCTTCTTGAAGCGTCTCGCTTTGATCATGTGTAGTATCTGTTCTAGAAA
GCTTAATCTCTTTCTGCCATCACACGTTGATGTGCATATTCGATTAAACT
TATTTTTCTTCGAGGTGAGGTCATATGTTTGGTGCTTGCATCATTCGACC
TCTACGCATTCGCTCTGTATTGCACAACTTCAGAGATTTACGAGAGTGCG
CCTCACAAAATTAAAAAAAAAA----------AAAAAAGATTCAATTTAA
AGGGACAACAGGCCAAAGCGCAACACGTTGGGAAAAAAGATGGATAAATG
TCGGACATATGAAACTTTTAAAATGGGTACCAACAAAAATAAAGAGACCA
ACACCAACACAAGGTAATGTTAGAAAAGAAGGTGGATTAACAACTAGACA
AACACCTTCACAAAATATGGAAACTAGATACACAAGATCAAATCGTAGAG
TTATTGGTGATAAAAAGAATGCAGAACATGATGAAGCATTTGAAATGATG
TATTTAAATAGTTTACCAAAAACAAGAAGAACCACTAAAAAGATGGATTT
ACTCCAAAAGAAACATTTACAAGATGCAGGTTTAGTTGATACTGATTTAC
ATGCCTCATCTGCTGATGAAAAATCCTCAACACCAAATAAAAATAATTAA
AACACCTCCACCAAAAAGAGCACCAGGTAGAGTTAAATCAATGTTATCAC
CTTCTCAAGATACAGCAATGTCAAATATAGGTTCAGATAGTGAATTAACT
TCAAAATCAAATGATGAACAAGAAACTGTTAAAAGTCCTTCAAGAAATTC
TAGAATAACTCCAAAAAGAAACAGTAATACAGGTTCATCAACTCCAACAA
CAACAACTACAACTACAACACAAACACCACAACCAACAACAACAGCATTA
AACACTCCAACTACTACTACTACTACTACTACCACTACACCAACTACAAA
ATCAAAAACTAATTTAGATGAATCAATGGATGATAAAGATAGTGGTGTCA
GTGAAGACGAATCAAAAAAATCTAAAAACAACAACAACACAAATAATACC
GATAATAAAAAAGATGAAAGTTTAAATAATAATAATAATAATAATAATAA
CAATAATAATAATAGTTCAAATGAAAAAATGGAAATTGAATCATCAAATA
ATTTAGACAATGGAAAAAATAGTGAATCTTCTTCAAACTTTTAATTTATA
AAAGTAATAATAAAAAACAAACA
Gap gap included
Contig length 1213
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 3246603
End point 3247610
Strand (PLUS/MINUS) PLUS
Number of clones 6
Number of EST 7
Link to clone list U11652
List of clone(s) 

est1=CHB551F,1,222
est2=CHB651F,1,222
est3=SLB353E,223,1214
est4=CHB551Z,423,902
est5=CFE633Z,861,1135
est6=VSH174Z,861,1197
est7=SFC506Z,866,1162
Translated Amino Acid sequence 
TFLKRLALIMCSICSRKLNLFLPSHVDVHIRLNLFFFEVRSYVWCLHHSTSTHSLCIAQL
QRFTRVRLTKLKKK---

---KKIQFKGTTGQSATRWEKRWINVGHMKLLKWVPTKIKRPTPTQGNVRKEGGLTTRQT
PSQNMETRYTRSNRRVIGDKKNAEHDEAFEMMYLNSLPKTRRTTKKMDLLQKKHLQDAGL
VDTDLHASSADEKSSTPNKNN*ntstkkstr*s*invitfsrysnvkyrfr**infkik*
*trnc*ksfkkf*nnskkkq*yrfinsnnnnynyntntttnnnsikhsnyyyyyyyhytn
ykikn*fr*ing**r*wcq*rrikki*kqqqhk*yr**kr*kfk********q****fk*
kngn*iik*frqwkk**iffklliyksnnkkqt
Translated Amino Acid sequence (All Frames) 
Frame A:
TFLKRLALIMCSICSRKLNLFLPSHVDVHIRLNLFFFEVRSYVWCLHHSTSTHSLCIAQL
QRFTRVRLTKLKKK---

---kkdsi*rdnrpkrntlgkkmdkcrtyetfkmgtnknketntntr*c*krrwinn*tn
tftkygn*ihkiks*syw**kecrt**si*ndvfk*ftknkknh*kdgftpketftrcrf
s*y*ftclic**kilntk*k*lkhlhqkehqvelnqcyhllkiqqcqi*vqivn*lqnqm
mnkkllkvlqeile*lqketviqvhqlqqqqlqlqhkhhnqqqqh*tlqlllllllplhq
lqnqkli*mnqwmikivvsvktnqknlkttttqiipiikkmkv*iiiiiiiitiiiivqm
kkwklnhqii*tmekivnllqtfnl*k***ktn

Frame B:
ps*svsl*scvvsvleslisfchhtlmcifd*tyfssr*ghmfgaciirplrirsvlhnf
rdlrecasqn*kk---

---KKIQFKGTTGQSATRWEKRWINVGHMKLLKWVPTKIKRPTPTQGNVRKEGGLTTRQT
PSQNMETRYTRSNRRVIGDKKNAEHDEAFEMMYLNSLPKTRRTTKKMDLLQKKHLQDAGL
VDTDLHASSADEKSSTPNKNN*ntstkkstr*s*invitfsrysnvkyrfr**infkik*
*trnc*ksfkkf*nnskkkq*yrfinsnnnnynyntntttnnnsikhsnyyyyyyyhytn
ykikn*fr*ing**r*wcq*rrikki*kqqqhk*yr**kr*kfk********q****fk*
kngn*iik*frqwkk**iffklliyksnnkkqt

Frame C:
lleasrfdhv*ylf*ka*slsaitr*caysikliflrgeviclvlasfdlyafalyctts
eiyesaphkikkk---

---krfnlkgqqakaqhvgkkdg*msdi*nf*ngyqqk*rdqhqhkvmlekkvd*qldkh
lhkiwkldtqdqivellvikrmqnmmkhlk*ci*ivyqkqeeplkrwiyskrniykmqv*
liliymphllmknpqhqikiiktpppkrapgrvksmlspsqdtamsnigsdseltsksnd
eqetvkspsrnsritpkrnsntgsstpttttttttqtpqptttalntpttttttttttpt
tksktnldesmddkdsgvsedeskksknnnntnntdnkkdeslnnnnnnnnnnnnnssne
kmeiessnnldngknsesssnf*fikviiknk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U11652-1 (Contig-U11652-1Q)
/CSM_Contig/Contig-U11652-1Q.Seq.d
         (1223 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U11652-1 (Contig-U11652-1Q) /CSM_Contig/Conti...  1201  0.0
Contig-U04608-1 (Contig-U04608-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U03464-1 (Contig-U03464-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U14510-1 (Contig-U14510-1Q) /CSM_Contig/Conti...    38  0.022
Contig-U13396-1 (Contig-U13396-1Q) /CSM_Contig/Conti...    38  0.022
Contig-U11757-1 (Contig-U11757-1Q) /CSM_Contig/Conti...    38  0.022
Contig-U10800-1 (Contig-U10800-1Q) /CSM_Contig/Conti...    38  0.022
Contig-U08784-1 (Contig-U08784-1Q) /CSM_Contig/Conti...    38  0.022
Contig-U04879-1 (Contig-U04879-1Q) /CSM_Contig/Conti...    38  0.022
Contig-U04077-1 (Contig-U04077-1Q) /CSM_Contig/Conti...    38  0.022

>Contig-U11652-1 (Contig-U11652-1Q) /CSM_Contig/Contig-U11652-1Q.Seq.d
          Length = 1223

 Score = 1201 bits (606), Expect = 0.0
 Identities = 606/606 (100%)
 Strand = Plus / Plus

                                                                       
Query: 233 aaaaaagattcaatttaaagggacaacaggccaaagcgcaacacgttgggaaaaaagatg 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 aaaaaagattcaatttaaagggacaacaggccaaagcgcaacacgttgggaaaaaagatg 292

                                                                       
Query: 293 gataaatgtcggacatatgaaacttttaaaatgggtaccaacaaaaataaagagaccaac 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 gataaatgtcggacatatgaaacttttaaaatgggtaccaacaaaaataaagagaccaac 352

                                                                       
Query: 353 accaacacaaggtaatgttagaaaagaaggtggattaacaactagacaaacaccttcaca 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 accaacacaaggtaatgttagaaaagaaggtggattaacaactagacaaacaccttcaca 412

                                                                       
Query: 413 aaatatggaaactagatacacaagatcaaatcgtagagttattggtgataaaaagaatgc 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 aaatatggaaactagatacacaagatcaaatcgtagagttattggtgataaaaagaatgc 472

                                                                       
Query: 473 agaacatgatgaagcatttgaaatgatgtatttaaatagtttaccaaaaacaagaagaac 532
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 agaacatgatgaagcatttgaaatgatgtatttaaatagtttaccaaaaacaagaagaac 532

                                                                       
Query: 533 cactaaaaagatggatttactccaaaagaaacatttacaagatgcaggtttagttgatac 592
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 cactaaaaagatggatttactccaaaagaaacatttacaagatgcaggtttagttgatac 592

                                                                       
Query: 593 tgatttacatgcctcatctgctgatgaaaaatcctcaacaccaaataaaaataattaaaa 652
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 tgatttacatgcctcatctgctgatgaaaaatcctcaacaccaaataaaaataattaaaa 652

                                                                       
Query: 653 cacctccaccaaaaagagcaccaggtagagttaaatcaatgttatcaccttctcaagata 712
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 cacctccaccaaaaagagcaccaggtagagttaaatcaatgttatcaccttctcaagata 712

                                                                       
Query: 713 cagcaatgtcaaatataggttcagatagtgaattaacttcaaaatcaaatgatgaacaag 772
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 cagcaatgtcaaatataggttcagatagtgaattaacttcaaaatcaaatgatgaacaag 772

                                                                       
Query: 773 aaactgttaaaagtccttcaagaaattctagaataactccaaaaagaaacagtaatacag 832
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 aaactgttaaaagtccttcaagaaattctagaataactccaaaaagaaacagtaatacag 832

                 
Query: 833 gttcat 838
           ||||||
Sbjct: 833 gttcat 838


 Score =  420 bits (212), Expect = e-117
 Identities = 212/212 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   accttcttgaagcgtctcgctttgatcatgtgtagtatctgttctagaaagcttaatctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   accttcttgaagcgtctcgctttgatcatgtgtagtatctgttctagaaagcttaatctc 60

                                                                       
Query: 61  tttctgccatcacacgttgatgtgcatattcgattaaacttatttttcttcgaggtgagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tttctgccatcacacgttgatgtgcatattcgattaaacttatttttcttcgaggtgagg 120

                                                                       
Query: 121 tcatatgtttggtgcttgcatcattcgacctctacgcattcgctctgtattgcacaactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcatatgtttggtgcttgcatcattcgacctctacgcattcgctctgtattgcacaactt 180

                                           
Query: 181 cagagatttacgagagtgcgcctcacaaaatt 212
           ||||||||||||||||||||||||||||||||
Sbjct: 181 cagagatttacgagagtgcgcctcacaaaatt 212


 Score =  224 bits (113), Expect = 2e-58
 Identities = 127/134 (94%)
 Strand = Plus / Plus

                                                                        
Query: 939  accaactacaaaatcaaaaactaatttagatgaatcaatggatgataaagatagtggtgt 998
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 939  accaactacaaaatcaaaaactaatttagatgaatcaatggatgataaagatagtggtgt 998

                                                                        
Query: 999  cagtgaagacgaatcnnnnnnntctaaaaacaacaacaacacaaataataccgataataa 1058
            |||||||||||||||       ||||||||||||||||||||||||||||||||||||||
Sbjct: 999  cagtgaagacgaatcaaaaaaatctaaaaacaacaacaacacaaataataccgataataa 1058

                          
Query: 1059 aaaagatgaaagtt 1072
            ||||||||||||||
Sbjct: 1059 aaaagatgaaagtt 1072


 Score =  216 bits (109), Expect = 4e-56
 Identities = 109/109 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1115 gttcaaatgaaaaaatggaaattgaatcatcaaataatttagacaatggaaaaaatagtg 1174
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1115 gttcaaatgaaaaaatggaaattgaatcatcaaataatttagacaatggaaaaaatagtg 1174

                                                             
Query: 1175 aatcttcttcaaacttttaatttataaaagtaataataaaaaacaaaca 1223
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1175 aatcttcttcaaacttttaatttataaaagtaataataaaaaacaaaca 1223


>Contig-U04608-1 (Contig-U04608-1Q) /CSM_Contig/Contig-U04608-1Q.Seq.d
          Length = 1205

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 970 gaatcaatggatgataaagatagtgg 995
           ||||||||||||||||||||| ||||
Sbjct: 55  gaatcaatggatgataaagatggtgg 80


>Contig-U03464-1 (Contig-U03464-1Q) /CSM_Contig/Contig-U03464-1Q.Seq.d
          Length = 1093

 Score = 40.1 bits (20), Expect = 0.006
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 1024 aaaaacaacaacaacacaaataat 1047
            |||||||||||||||| |||||||
Sbjct: 1040 aaaaacaacaacaacataaataat 1063


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 29,261
Number of Sequences: 6905
Number of extensions: 29261
Number of successful extensions: 7025
Number of sequences better than 10.0: 474
length of query: 1223
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1207
effective length of database: 5,564,391
effective search space: 6716219937
effective search space used: 6716219937
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.25
Homology vs DNA 
Query= Contig-U11652-1 (Contig-U11652-1Q) /CSM_Contig/Contig-U11652-1Q.Seq.d
         (1223 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU060751) Dictyostelium discoideum slug cDNA, clone SLB353.      753   0.0    2
(BJ377714) Dictyostelium discoideum cDNA clone:ddc25e13, 3' ...   355   0.0    2
(AU033718) Dictyostelium discoideum slug cDNA, clone SLB353.      339   e-139  3
(AJ699380) Dictyostelium discoideum u2 snRNA, clone ddR-19.       408   e-109  1
(BJ363199) Dictyostelium discoideum cDNA clone:ddc25e13, 5' ...   408   e-109  1
(BJ363200) Dictyostelium discoideum cDNA clone:ddc25e14, 5' ...   402   e-107  1
(DQ012952) Dictyostelium discoideum U2C snRNA, partial seque...   355   3e-93  1
(AU267023) Dictyostelium discoideum vegetative cDNA clone:VS...   129   1e-35  2
(BJ399468) Dictyostelium discoideum cDNA clone:dds6k01, 3' e...   129   3e-25  1
(BJ371899) Dictyostelium discoideum cDNA clone:ddc10a10, 3' ...   125   4e-24  1
(DQ012953) Dictyostelium discoideum U2D snRNA, complete sequ...    52   2e-10  3
(AC115581) Dictyostelium discoideum chromosome 2 map complem...    52   7e-08  8
(DQ012955) Dictyostelium discoideum U2F snRNA, complete sequ...    52   2e-06  3
(BZ387550) EINCN20TF EI_10_12_KB Entamoeba invadens genomic ...    64   1e-05  1
(AZ679350) ENTMC32TF Entamoeba histolytica Sheared DNA Entam...    60   2e-04  1
(AZ668388) ENTMT49TF Entamoeba histolytica Sheared DNA Entam...    60   2e-04  1
(AM644803) Entamoeba moshkovskii FIC GSS, clone mosh016d08.p1k.    60   2e-04  1
(AM633230) Entamoeba dispar GSS, clone dispar99e05.q1k.            60   2e-04  1
(EU115964) Dictyostelium discoideum Ddi2645 RNA, complete se...    54   0.013  1
(EY479432) CBBP1027.fwd CBBP Hirudo medicinalis hermaphrodit...    54   0.013  1
(AJ438829) Plasmodium reichenowi partial eba-140 homologous ...    44   0.035  2
(BH156468) ENTRM59TR Entamoeba histolytica Sheared DNA Entam...    52   0.051  1
(AY572433) Plasmodium reichenowi erythrocyte invasion ligand...    44   0.077  2
(BQ596524) PfESToab18h10.y1 Plasmodium falciparum 3D7 asexua...    38   0.13   2
(Z50072) V.necatrix DNA for U2 snRNA gene.                         50   0.20   1
(AY033090) Plasmodium falciparum Pfs38 gene, complete cds.         38   0.30   2
(AK222378) Ciona intestinalis cDNA, clone:ciem804c24, full i...    48   0.79   1
(DX755638) 2318921 VV03 Ustilago maydis genomic clone 100800...    48   0.79   1
(DX749914) 2513560 VV03 Ustilago maydis genomic clone 108138...    48   0.79   1
(DX697308) 2118672 VV03 Ustilago maydis genomic clone 896828...    48   0.79   1
(DX696223) 2212248 VV03 Ustilago maydis genomic clone 863033...    48   0.79   1
(DX676135) 2245188 VV03 Ustilago maydis genomic clone 883673...    48   0.79   1
(DX636193) 2106994 VV02 Ustilago maydis genomic clone 812537...    48   0.79   1
(EH028505) MMN_43_E01 Haploid cells grown in Minimal Media m...    48   0.79   1
(EH028097) MMN_38_H05 Haploid cells grown in Minimal Media m...    48   0.79   1
(AV436604) Porphyra yezoensis cDNA clone:PS005h12_r, 5' end.       48   0.79   1
(FK042477) XABT72051.b2 Gateway compatible cien cDNA library...    48   0.79   1
(AZ533598) ENTCV66TF Entamoeba histolytica Sheared DNA Entam...    46   0.95   2
(DT270320) JGI_CAAV3433.rev CAAV Pimephales promelas testis ...    36   1.5    3
(AC120489) Rattus norvegicus clone CH230-118C6, *** SEQUENCI...    40   1.8    6
(CT455073) Sus scrofa genomic clone CH242-455N24, genomic su...    42   3.1    2
(CR352298) Zebrafish DNA sequence from clone CH211-150E10 in...    46   3.1    1
(CR318652) Zebrafish DNA sequence from clone CH211-128O18 in...    46   3.1    1
(BX548023) Zebrafish DNA sequence from clone DKEY-265O13 in ...    46   3.1    1
(Y15811) Xanthophyllomyces dendrorhous idi gene.                   46   3.1    1
(X71483) C.reinhardtii U2 snRNA.                                   46   3.1    1
(DQ235686) Xanthophyllomyces dendrorhous isopentenyl diphosp...    46   3.1    1
(AL590446) chromosome VI of strain GB-M1 of Encephalitozoon ...    46   3.1    1
(AF053589) Nosema locustae U2 snRNA gene, complete sequence.       46   3.1    1
(AC108605) Rattus norvegicus clone CH230-267P22, *** SEQUENC...    46   3.1    1
(AC103229) Rattus norvegicus clone CH230-217O18, WORKING DRA...    46   3.1    1
(BX908730) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    46   3.1    1
(AC188516) Sorex araneus clone SA_Ba-437F12, WORKING DRAFT S...    46   3.1    1
(AZ549008) ENTFK29TR Entamoeba histolytica Sheared DNA Entam...    46   3.1    1
(AZ544770) ENTFL48TF Entamoeba histolytica Sheared DNA Entam...    46   3.1    1
(ER468770) 1092963941522 Global-Ocean-Sampling_GS-35-01-01-1...    46   3.1    1
(ED231534) AUAC-aac53e10.g1 Ascaris suum whole genome shotgu...    46   3.1    1
(DU761966) ASNG3960.b2 HF200_10-06-02 uncultured marine micr...    46   3.1    1
(CT545860) A BAC library has been constructed from cultivar ...    46   3.1    1
(EG000200) EST72818 Larval Stage 1 Aedes aegypti cDNA clone ...    46   3.1    1
(AV630147) Chlamydomonas reinhardtii cDNA clone:LCL074c03_r,...    46   3.1    1
(AV628511) Chlamydomonas reinhardtii cDNA clone:LCL043a08_r,...    46   3.1    1
(AV625999) Chlamydomonas reinhardtii cDNA clone:LC100h06_r, ...    46   3.1    1
(AV621816) Chlamydomonas reinhardtii cDNA clone:LC041c12_r, ...    46   3.1    1
(AV619633) Chlamydomonas reinhardtii cDNA clone:LC011a07_r, ...    46   3.1    1
(AV618976) Chlamydomonas reinhardtii cDNA clone:LC002b02_r, ...    46   3.1    1
(EB098643) EST61075 Larval Stage 1 Aedes aegypti cDNA clone ...    46   3.1    1
(EB087203) EST49635 Larval Stage 1 Aedes aegypti cDNA clone ...    46   3.1    1
(DW995750) EST48131 Larval Stage 1 Aedes aegypti cDNA clone ...    46   3.1    1
(DW987329) EST39710 Larval Stage 1 Aedes aegypti cDNA clone ...    46   3.1    1
(DW211062) EST27326 Larval Stage 1 Aedes aegypti cDNA clone ...    46   3.1    1
(DW209158) EST25422 Larval Stage 1 Aedes aegypti cDNA clone ...    46   3.1    1
(DW208464) EST24728 Larval Stage 1 Aedes aegypti cDNA clone ...    46   3.1    1
(DW203417) EST19681 Larval Stage 1 Aedes aegypti cDNA clone ...    46   3.1    1
(DW202972) EST19242 Larval Stage 1 Aedes aegypti cDNA clone ...    46   3.1    1
(DW188938) EST05208 Larval Stage 1 Aedes aegypti cDNA clone ...    46   3.1    1
(DV437691) NAEA355TF Aedes aegypti infected with Dengue viru...    46   3.1    1
(DV436190) NADCI33TR Aedes aegypti infected with Dengue viru...    46   3.1    1
(DV436189) NADCI33TF Aedes aegypti infected with Dengue viru...    46   3.1    1
(DV424388) NADY582TF Aedes aegypti infected with Dengue viru...    46   3.1    1
(DV408912) NADWP86TF Aedes aegypti infected with Dengue viru...    46   3.1    1
(DV406017) NADWP86TR Aedes aegypti infected with Dengue viru...    46   3.1    1
(DV402748) NADVK63TR Aedes aegypti infected with Dengue viru...    46   3.1    1
(DV402746) NADVK63TF Aedes aegypti infected with Dengue viru...    46   3.1    1
(DV402671) NADWY29TF Aedes aegypti infected with Dengue viru...    46   3.1    1
(DV395509) NADEC80TR Aedes aegypti infected with Dengue viru...    46   3.1    1
(DV395508) NADEC80TF Aedes aegypti infected with Dengue viru...    46   3.1    1
(DV390753) NADBL28TF Aedes aegypti infected with Dengue viru...    46   3.1    1
(DV376464) NACNU79TO Aedes aegypti infected with Plasmodium ...    46   3.1    1
(DV376462) NACNU79TF Aedes aegypti infected with Plasmodium ...    46   3.1    1
(DV367301) NACBH39TR Aedes aegypti infected with Brugia Mala...    46   3.1    1
(DV367300) NACBH39TF Aedes aegypti infected with Brugia Mala...    46   3.1    1
(DV364875) NACA740TR Aedes aegypti infected with Brugia Mala...    46   3.1    1
(DV364874) NACA740TF Aedes aegypti infected with Brugia Mala...    46   3.1    1
(DV357299) NABZ403TF Aedes aegypti infected with Plasmodium ...    46   3.1    1
(DV350377) NABXV03TF Aedes aegypti infected with Plasmodium ...    46   3.1    1
(DV346964) NABWP29TF Aedes aegypti infected with Brugia Mala...    46   3.1    1
(DV342499) NABTY57TO Aedes aegypti infected with Plasmodium ...    46   3.1    1
(DV342498) NABTY57TF Aedes aegypti infected with Plasmodium ...    46   3.1    1
(DV341993) NABTT83TF Aedes aegypti infected with Plasmodium ...    46   3.1    1

>(AU060751) Dictyostelium discoideum slug cDNA, clone SLB353.
          Length = 540

 Score =  753 bits (380), Expect(2) = 0.0
 Identities = 380/380 (100%)
 Strand = Plus / Plus


Query: 239 gattcaatttaaagggacaacaggccaaagcgcaacacgttgggaaaaaagatggataaa 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7   gattcaatttaaagggacaacaggccaaagcgcaacacgttgggaaaaaagatggataaa 66


Query: 299 tgtcggacatatgaaacttttaaaatgggtaccaacaaaaataaagagaccaacaccaac 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67  tgtcggacatatgaaacttttaaaatgggtaccaacaaaaataaagagaccaacaccaac 126


Query: 359 acaaggtaatgttagaaaagaaggtggattaacaactagacaaacaccttcacaaaatat 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 acaaggtaatgttagaaaagaaggtggattaacaactagacaaacaccttcacaaaatat 186


Query: 419 ggaaactagatacacaagatcaaatcgtagagttattggtgataaaaagaatgcagaaca 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 ggaaactagatacacaagatcaaatcgtagagttattggtgataaaaagaatgcagaaca 246


Query: 479 tgatgaagcatttgaaatgatgtatttaaatagtttaccaaaaacaagaagaaccactaa 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tgatgaagcatttgaaatgatgtatttaaatagtttaccaaaaacaagaagaaccactaa 306


Query: 539 aaagatggatttactccaaaagaaacatttacaagatgcaggtttagttgatactgattt 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 aaagatggatttactccaaaagaaacatttacaagatgcaggtttagttgatactgattt 366


Query: 599 acatgcctcatctgctgatg 618
           ||||||||||||||||||||
Sbjct: 367 acatgcctcatctgctgatg 386

 Score =  210 bits (106), Expect(2) = 0.0
 Identities = 106/106 (100%)
 Strand = Plus / Plus


Query: 668 gagcaccaggtagagttaaatcaatgttatcaccttctcaagatacagcaatgtcaaata 727
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gagcaccaggtagagttaaatcaatgttatcaccttctcaagatacagcaatgtcaaata 494


Query: 728 taggttcagatagtgaattaacttcaaaatcaaatgatgaacaaga 773
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 taggttcagatagtgaattaacttcaaaatcaaatgatgaacaaga 540

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,103,783,052
Number of extensions: 68438373
Number of successful extensions: 5695298
Number of sequences better than 10.0: 206
Length of query: 1223
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1199
Effective length of database: 97,308,875,965
Effective search space: 116673342282035
Effective search space used: 116673342282035
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.30
Homology vs Protein 
Query= Contig-U11652-1 (Contig-U11652-1Q) /CSM_Contig/Contig-U11652-1Q.Seq.d
         (1223 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT075677_1(BT075677|pid:none) Osmerus mordax clone omor-eva-516-...    36   2.4
(Q5XH61) B-cell CLL/lymphoma 7 protein family member A.  &BC0842...    35   4.2
AL445565_61(AL445565|pid:none) Mycoplasma pulmonis (strain UAB C...    35   4.2
BC123218_1(BC123218|pid:none) Xenopus laevis hypothetical protei...    35   4.2
(P13985) RecName: Full=Putative HTLV-1-related endogenous sequen...    35   5.4
BC010017_1(BC010017|pid:none) Homo sapiens cDNA clone IMAGE:2819...    35   5.4
(Q8WUZ0) RecName: Full=B-cell CLL/lymphoma 7 protein family memb...    35   5.4
FB899603_1(FB899603|pid:none) Sequence 118876 from Patent WO2008...    35   5.4
AM269894_45(AM269894|pid:none) Eimeria tenella chromosome 1, ord...    35   5.4
BC136023_1(BC136023|pid:none) Xenopus tropicalis hypothetical pr...    35   5.4
BC019071_1(BC019071|pid:none) Homo sapiens B-cell CLL/lymphoma 7...    35   5.4
FB899595_1(FB899595|pid:none) Sequence 118868 from Patent WO2008...    35   5.4
BC142100_1(BC142100|pid:none) Bos taurus B-cell CLL/lymphoma 7C,...    35   5.4
(O08664) RecName: Full=B-cell CLL/lymphoma 7 protein family memb...    35   5.4
AE014297_3952(AE014297|pid:none) Drosophila melanogaster chromos...    35   7.1
BT076916_1(BT076916|pid:none) Caligus rogercresseyi clone crog-e...    35   7.1
BT059803_1(BT059803|pid:none) Drosophila melanogaster MIP05631 f...    35   7.1

>BT075677_1(BT075677|pid:none) Osmerus mordax clone omor-eva-516-374
           B-cell CLL/lymphoma 7 protein family member B putative
           mRNA, complete cds.
          Length = 201

 Score = 36.2 bits (82), Expect = 2.4
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
 Frame = +3

Query: 264 QSATRWEKRWINVG--HMKLLKWVPT----KIKRPTPTQGNVRKEGGLTTRQTPSQNMET 425
           +   +WEK+W+ VG   +++ KWVP     +I R   T G V+    +    T S  ++
Sbjct: 26  EKVRKWEKKWVAVGDTSLRIFKWVPVTDTKQIYRSKSTGGEVQGLKDVVLENTSSALLDF 85

Query: 426 RYTRSNRRVIGD 461
           +   SN+  + D
Sbjct: 86  QDENSNQSFMSD 97

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,421,658,163
Number of extensions: 25715459
Number of successful extensions: 70892
Number of sequences better than 10.0: 17
Number of HSP's gapped: 70797
Number of HSP's successfully gapped: 17
Length of query: 407
Length of database: 1,051,180,864
Length adjustment: 131
Effective length of query: 276
Effective length of database: 627,191,635
Effective search space: 173104891260
Effective search space used: 173104891260
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.96  gvh: 0.54  alm: 0.36  top: 0.47  tms: 0.00  mit: 0.47  mip: 0.04
 nuc: 0.18  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: mitochondrial
	 20.0 %: nuclear
	 16.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: extracellular, including cell wall

>> prediction for Contig-U11652-1 is mit
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 1
CH (FL, L) 2
CF (FL, S) 1
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0