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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U11615-1
Contig ID Contig-U11615-1
Contig update 2002.12.18
Contig sequence 
>Contig-U11615-1 (Contig-U11615-1Q) /CSM_Contig/Contig-U11615-1Q.Seq.d
ATTTTGTTTTTATTTATTTGTATCATTAATATAAATTTATATCTATATCA
CACATTGTTTTTATTTCATAATTTCATACACCCACTTTTTTTTTTTATGA
CACAAAAACAATTTAAATAAAAATAAATTTACCGCTCTTTGTAAAAATAA
ATAAAAAAAAAACCAATTAAAAAACCCCTTAAAAAAAAAA----------
CACACATAATTTTTTTTATTTCATTTTTCTTTTTTATTTTTTTTTTTTTT
ATTTTTTATAAAAACAATATAAAATAAAACTCAATATTTCAATTTAAAAA
AAAAAAAAAAAAATGGATACAATAGTTTCATCCTCAACAACTAATCCACC
AACAACAACAGAGTCAACAATAAATAGTATAATAACAACAACAGATTCTA
ATAGTAATAACACAAATGATAACACTACAACTAATACCACTACTACAACT
ACAACAACAACAACAACTAATATTATAAATGACTCTGATTTAAAAACAAA
AACAACCACAACAACAACAACAATAATAAATGAAGAAAATTCAAAAATTA
CAATAAAAACCAAATGGAATGGTAAAGAATATAAAGTATTGATTTCAAAG
AGTTCAACAGTTTTTGATTTAAAGAGACAATTGGAAACAATGACAAATGT
ATTATCAAAGAGACAAAAAATTTTAGGATTATCAAAAGGTAAACAACCAA
CTGATGAAATGATAATAGAATCATTATCAATTCAAGATAATCATAGTATC
ATTATGATGGGGTACCCCCAGAGTCAAATATTATTGCTGACGTTCCCAAA
AACAAGTGGTGATACCGATGAGGTATTCAATGATTTCGAATTTGATTATA
TCCCAGATTCTGATGAAATCTCTCATATTGAAAAAAATAAAAATCAATTA
CTTGCAATGATTGAACGTTCCAAATGATATCTCTTTAATTAATGACCCAA
GACCAAATAAAAAATTATTAGTTTTAGATTTAGATCATACAATTTTAGAT
TTTAAAGATCAAGATGTTGAAAATATGAAAAGACCACATTTAGAAGAATT
TTTAGTACAATCCTATCAACATTATGATATTGGAATTTGGTCTCAAACTA
GTTGGAAATGGATTGAAATTAAATTAACAGAGTTGGGATTATTAACTAAT
CCACGTTTTAAAATTTGTTTTGTAATGGATCAAACATTAATGTTTAAGGT
AACAACCTATAGAACCATCAATGGTAAAGAGAGAACTAAAATTAAACATA
ATGTAAAAGCATTGGAAGTAATTTGGAAACATCAACATTTAGGTAAATTC
TTTAGTATGAAAAATACTTTACATGTTGATGATCTCTCCAAAAACTTTGC
AATGAATCCAAAGAATGGTGTACATGTTCCACCTTTTAAAATTAAAGATG
CTAAAAAGTATGGTGATAATGTCTTATTCCATCTAACAAAATATTTAAAA
TCAATTTCAAATGAAGAAGATATAACTCTTATTGATCATAAGGAATGGAT
TAGAAAAATTTTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGTAAAT
AAATAAAAAAAGTTGTAATTTTTTTAAAAACAAAAAA
Gap gap included
Contig length 1577
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 2515155
End point 2516651
Strand (PLUS/MINUS) PLUS
Number of clones 71
Number of EST 74
Link to clone list U11615
List of clone(s) 

est1=SHK444F,-5,131
est2=CFJ276F,-1,125
est3=CHJ461F,1,190
est4=SHH160F,12,190
est5=CHO107F,15,190
est6=AHQ818F,20,190
est7=SHI538F,25,190
est8=AHE218F,28,190
est9=CFJ128F,28,174
est10=SHA357F,28,190
est11=SHA609F,28,190
est12=SHH228F,30,190
est13=VHA608F,45,190
est14=SHK127F,47,190
est15=SHL188F,75,189
est16=SSD374F,191,844
est17=AFO262F,250,750
est18=SLK190F,264,576
est19=CFD743F,303,961
est20=CFA370E,338,1461
est21=CFF616Z,690,1372
est22=CFJ228Z,692,1299
est23=CHC329Z,697,1344
est24=AFG517Z,703,1363
est25=CFA592Z,703,1365
est26=CFC380Z,704,1379
est27=CFF165Z,705,1372
est28=CHE112Z,706,1367
est29=SFC166Z,706,1346
est30=CFE567Z,707,1380
est31=CHB163Z,707,1370
est32=SFD820Z,707,1344
est33=VFA658Z,708,1352
est34=SFF548Z,709,1358
est35=AFF213Z,716,1355
est36=AFI882Z,717,1341
est37=SFL188Z,727,1378
est38=CHC367Z,728,1384
est39=CFF647Z,729,1357
est40=SFG712Z,730,1359
est41=CHD154Z,731,1359
est42=SFH658Z,732,1387
est43=CFA289Z,762,1372
est44=CFJ135Z,763,1363
est45=SFD652Z,764,1357
est46=CFA488Z,765,1364
est47=CFJ577Z,765,1357
est48=SFE232Z,765,1347
est49=SFF186Z,769,1366
est50=CFJ128Z,772,1432
est51=SHE447Z,781,1378
est52=SSK715Z,789,1513
est53=CFJ276Z,791,1255
est54=CFF607Z,794,1400
est55=AFI261Z,795,1364
est56=SFF746Z,803,1367
est57=CHK657Z,807,1472
est58=SFE318Z,813,1345
est59=CFB630Z,816,1372
est60=SFG351Z,850,1374
est61=CFF555Z,860,1364
est62=CFH501Z,870,1363
est63=SFB575Z,870,1359
est64=CFC336Z,901,1364
est65=CHA353Z,903,1364
est66=SSM888Z,955,1579
est67=SFB773Z,957,1357
est68=SSD374Z,962,1576
est69=SFH521Z,1006,1352
est70=CHB871Z,1095,1376
est71=VFC457Z,1097,1361
est72=CHE204Z,1098,1366
est73=SLK190Z,1295,1506
est74=FC-IC1323F,1362,1549
Translated Amino Acid sequence 
ilflficiininlylyhtlflfhnfihplfffmtqkqfk*k*iyrsl*k*IKKKPIKKPL
KKK---

---HIIFFISFFFFIFFFFIFYKNNIK*nsifqfkkkkkkwiq*fhpqqlihqqqqsqq*
iv**qqqilivitqmitlqlipllqlqqqqqlil*mtli*kqkqpqqqqq**mkkiqklq
*kpngmvkniky*fqrvqqfli*rdnwkq*qmyyqrdkkf*dyqkvnnqlmk***nhyqf
kiiivsl*wgtprvkyyc*rsqkqvvipmrysmisnliisqilmkslilkkikinylq*l
nvpndislindprpnkkllvldldhtildfkdqdvenmkrphleeflvqsyqhydigiws
qtswkwieikltelglltnprfkicfvmdqtlmfkvttyrtingkertkikhnvkalevi
wkhqhlgkffsmkntlhvddlsknfamnpkngvhvppfkikdakkygdnvlfhltkylks
isneeditlidhkewirkil*kkkkkkkkkck*ikkvviflktk
Translated Amino Acid sequence (All Frames) 
Frame A:
ilflficiininlylyhtlflfhnfihplfffmtqkqfk*k*iyrsl*k*IKKKPIKKPL
KKK---

---ht*fflfhfsflfffflffikti*nktqyfnlkkkkkngynsfilnn*stnnnrvnn
k*ynnnnrf****hk**hyn*yhyynynnnnn*yyk*l*fknknnhnnnnnnk*rkfkny
nknqmew*ri*sidfkefnsf*fketignndkciiketknfriikr*ttn**ndnriiin
sr*s*yhydgvppesniiadvpknkw*yr*giq*fri*lyprf**nlsy*kk*ksitcnd
*tfqmisl*lmtqdqikny*f*i*iiqf*ilkikmlki*kdhi*knf*ynpinimilefg
lklvgnglkln*qswdy*lihvlkfvl*wikh*clr*qpiepsmvkrelklnim*khwk*
fgnini*vnslv*kilymlmispktlq*iqrmvymfhllklkmlksmvimsysi*qni*n
qfqmkki*llliirnglekfykkkkkkkkknvnk*kkl*ff*kqk

Frame B:
fcfylfvsli*iyiyithcfyfiisythfffl*hknnlnknkftalcknk*kknqlknpl
kkk---

---thnffyfiflfyffffyfl*kqykiklnisi*kkkkkmdtivsssttnpptttesti
nsiitttdsnsnntndntttntttttttttttniindsdlktktttttttiineenskit
iktkwngkeykvlisksstvfdlkrqletmtnvlskrqkilglskgkqptdemiieslsi
qdnhsiimmgypqsqillltfpktsgdtdevfndfefdyipdsdeishieknknqllami
ersk*ylfn**pktk*kiisfrfrsynfrf*rsrc*kyekttfrrifstilstl*ywnlv
sn*lemd*n*inrvgiin*stf*nlfcngsninv*gnnl*nhqw*ren*n*t*cksigsn
letstfr*il*yekyftc**slqklcneskewctcstf*n*rc*kvw**clipsnkifki
nfk*rrynsy*s*gmd*knfikkkkkkkkkm*inkkscnffknkk

Frame C:
fvfiylyh*ykfisishivfis*fhtptfffydtkti*ikinlplfvkinkkktn*ktp*
kk---

---HIIFFISFFFFIFFFFIFYKNNIK*nsifqfkkkkkkwiq*fhpqqlihqqqqsqq*
iv**qqqilivitqmitlqlipllqlqqqqqlil*mtli*kqkqpqqqqq**mkkiqklq
*kpngmvkniky*fqrvqqfli*rdnwkq*qmyyqrdkkf*dyqkvnnqlmk***nhyqf
kiiivsl*wgtprvkyyc*rsqkqvvipmrysmisnliisqilmkslilkkikinylq*l
nvpndislindprpnkkllvldldhtildfkdqdvenmkrphleeflvqsyqhydigiws
qtswkwieikltelglltnprfkicfvmdqtlmfkvttyrtingkertkikhnvkalevi
wkhqhlgkffsmkntlhvddlsknfamnpkngvhvppfkikdakkygdnvlfhltkylks
isneeditlidhkewirkil*kkkkkkkkkck*ikkvviflktk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U11615-1 (Contig-U11615-1Q)
/CSM_Contig/Contig-U11615-1Q.Seq.d
         (1587 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U11615-1 (Contig-U11615-1Q) /CSM_Contig/Conti...  1231  0.0
Contig-U12197-1 (Contig-U12197-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U09958-1 (Contig-U09958-1Q) /CSM_Contig/Conti...    40  0.007
Contig-U09585-1 (Contig-U09585-1Q) /CSM_Contig/Conti...    40  0.007
Contig-U13902-1 (Contig-U13902-1Q) /CSM_Contig/Conti...    38  0.029
Contig-U11815-1 (Contig-U11815-1Q) /CSM_Contig/Conti...    38  0.029
Contig-U11472-1 (Contig-U11472-1Q) /CSM_Contig/Conti...    38  0.029
Contig-U06829-1 (Contig-U06829-1Q) /CSM_Contig/Conti...    38  0.029
Contig-U03798-1 (Contig-U03798-1Q) /CSM_Contig/Conti...    38  0.029
Contig-U03296-1 (Contig-U03296-1Q) /CSM_Contig/Conti...    38  0.029

>Contig-U11615-1 (Contig-U11615-1Q) /CSM_Contig/Contig-U11615-1Q.Seq.d
          Length = 1587

 Score = 1231 bits (621), Expect = 0.0
 Identities = 621/621 (100%)
 Strand = Plus / Plus

                                                                        
Query: 894  tcaattacttgcaatgattgaacgttccaaatgatatctctttaattaatgacccaagac 953
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 894  tcaattacttgcaatgattgaacgttccaaatgatatctctttaattaatgacccaagac 953

                                                                        
Query: 954  caaataaaaaattattagttttagatttagatcatacaattttagattttaaagatcaag 1013
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 954  caaataaaaaattattagttttagatttagatcatacaattttagattttaaagatcaag 1013

                                                                        
Query: 1014 atgttgaaaatatgaaaagaccacatttagaagaatttttagtacaatcctatcaacatt 1073
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1014 atgttgaaaatatgaaaagaccacatttagaagaatttttagtacaatcctatcaacatt 1073

                                                                        
Query: 1074 atgatattggaatttggtctcaaactagttggaaatggattgaaattaaattaacagagt 1133
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1074 atgatattggaatttggtctcaaactagttggaaatggattgaaattaaattaacagagt 1133

                                                                        
Query: 1134 tgggattattaactaatccacgttttaaaatttgttttgtaatggatcaaacattaatgt 1193
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1134 tgggattattaactaatccacgttttaaaatttgttttgtaatggatcaaacattaatgt 1193

                                                                        
Query: 1194 ttaaggtaacaacctatagaaccatcaatggtaaagagagaactaaaattaaacataatg 1253
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1194 ttaaggtaacaacctatagaaccatcaatggtaaagagagaactaaaattaaacataatg 1253

                                                                        
Query: 1254 taaaagcattggaagtaatttggaaacatcaacatttaggtaaattctttagtatgaaaa 1313
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1254 taaaagcattggaagtaatttggaaacatcaacatttaggtaaattctttagtatgaaaa 1313

                                                                        
Query: 1314 atactttacatgttgatgatctctccaaaaactttgcaatgaatccaaagaatggtgtac 1373
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1314 atactttacatgttgatgatctctccaaaaactttgcaatgaatccaaagaatggtgtac 1373

                                                                        
Query: 1374 atgttccaccttttaaaattaaagatgctaaaaagtatggtgataatgtcttattccatc 1433
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1374 atgttccaccttttaaaattaaagatgctaaaaagtatggtgataatgtcttattccatc 1433

                                                                        
Query: 1434 taacaaaatatttaaaatcaatttcaaatgaagaagatataactcttattgatcataagg 1493
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1434 taacaaaatatttaaaatcaatttcaaatgaagaagatataactcttattgatcataagg 1493

                                 
Query: 1494 aatggattagaaaaattttat 1514
            |||||||||||||||||||||
Sbjct: 1494 aatggattagaaaaattttat 1514


 Score =  634 bits (320), Expect = 0.0
 Identities = 320/320 (100%)
 Strand = Plus / Plus

                                                                       
Query: 561 caaatggaatggtaaagaatataaagtattgatttcaaagagttcaacagtttttgattt 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caaatggaatggtaaagaatataaagtattgatttcaaagagttcaacagtttttgattt 620

                                                                       
Query: 621 aaagagacaattggaaacaatgacaaatgtattatcaaagagacaaaaaattttaggatt 680
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaagagacaattggaaacaatgacaaatgtattatcaaagagacaaaaaattttaggatt 680

                                                                       
Query: 681 atcaaaaggtaaacaaccaactgatgaaatgataatagaatcattatcaattcaagataa 740
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atcaaaaggtaaacaaccaactgatgaaatgataatagaatcattatcaattcaagataa 740

                                                                       
Query: 741 tcatagtatcattatgatggggtacccccagagtcaaatattattgctgacgttcccaaa 800
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcatagtatcattatgatggggtacccccagagtcaaatattattgctgacgttcccaaa 800

                                                                       
Query: 801 aacaagtggtgataccgatgaggtattcaatgatttcgaatttgattatatcccagattc 860
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aacaagtggtgataccgatgaggtattcaatgatttcgaatttgattatatcccagattc 860

                               
Query: 861 tgatgaaatctctcatattg 880
           ||||||||||||||||||||
Sbjct: 861 tgatgaaatctctcatattg 880


 Score =  188 bits (95), Expect = 1e-47
 Identities = 95/95 (100%)
 Strand = Plus / Plus

                                                                       
Query: 314 tggatacaatagtttcatcctcaacaactaatccaccaacaacaacagagtcaacaataa 373
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tggatacaatagtttcatcctcaacaactaatccaccaacaacaacagagtcaacaataa 373

                                              
Query: 374 atagtataataacaacaacagattctaatagtaat 408
           |||||||||||||||||||||||||||||||||||
Sbjct: 374 atagtataataacaacaacagattctaatagtaat 408


 Score = 75.8 bits (38), Expect = 1e-13
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                 
Query: 258 ataaaaacaatataaaataaaactcaatatttcaattt 295
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ataaaaacaatataaaataaaactcaatatttcaattt 295


 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 468 taatattataaatgactctgatt 490
           |||||||||||||||||||||||
Sbjct: 468 taatattataaatgactctgatt 490


 Score = 42.1 bits (21), Expect = 0.002
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 65 ttcataatttcatacacccac 85
          |||||||||||||||||||||
Sbjct: 65 ttcataatttcatacacccac 85


>Contig-U12197-1 (Contig-U12197-1Q) /CSM_Contig/Contig-U12197-1Q.Seq.d
          Length = 1896

 Score = 42.1 bits (21), Expect = 0.002
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 260 aaaaacaatataaaataaaactcaa 284
           |||||||| ||||||||||||||||
Sbjct: 40  aaaaacaaaataaaataaaactcaa 64


>Contig-U09958-1 (Contig-U09958-1Q) /CSM_Contig/Contig-U09958-1Q.Seq.d
          Length = 1206

 Score = 40.1 bits (20), Expect = 0.007
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 638 caatgacaaatgtattatca 657
           ||||||||||||||||||||
Sbjct: 362 caatgacaaatgtattatca 381


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 29,839
Number of Sequences: 6905
Number of extensions: 29839
Number of successful extensions: 2953
Number of sequences better than 10.0: 355
length of query: 1587
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1571
effective length of database: 5,564,391
effective search space: 8741658261
effective search space used: 8741658261
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.25
Homology vs DNA 
Query= Contig-U11615-1 (Contig-U11615-1Q) /CSM_Contig/Contig-U11615-1Q.Seq.d
         (1587 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C94024) Dictyostelium discoideum slug cDNA, clone SSK715.       1178   0.0    3
(BJ381968) Dictyostelium discoideum cDNA clone:ddc43a16, 3' ...  1092   0.0    3
(C93262) Dictyostelium discoideum slug cDNA, clone SSM888.       1084   0.0    1
(C84884) Dictyostelium discoideum slug cDNA, clone SSD374.       1078   0.0    1
(BJ371827) Dictyostelium discoideum cDNA clone:ddc1l17, 3' e...  1074   0.0    4
(BJ401648) Dictyostelium discoideum cDNA clone:dds23o21, 3' ...   979   0.0    4
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...   975   0.0    8
(BJ405655) Dictyostelium discoideum cDNA clone:dds32n12, 3' ...   971   0.0    3
(BJ372331) Dictyostelium discoideum cDNA clone:ddc12m02, 3' ...   967   0.0    3
(BJ402362) Dictyostelium discoideum cDNA clone:dds16c16, 3' ...   940   0.0    5
(BJ377960) Dictyostelium discoideum cDNA clone:ddc26f17, 3' ...   940   0.0    5
(BJ374032) Dictyostelium discoideum cDNA clone:ddc5p19, 3' e...   930   0.0    5
(BJ371958) Dictyostelium discoideum cDNA clone:ddc10e17, 3' ...   930   0.0    5
(BJ373160) Dictyostelium discoideum cDNA clone:ddc1a24, 3' e...   916   0.0    4
(BJ372339) Dictyostelium discoideum cDNA clone:ddc12o04, 3' ...   916   0.0    5
(BJ372156) Dictyostelium discoideum cDNA clone:ddc11a17, 3' ...   916   0.0    5
(BJ377464) Dictyostelium discoideum cDNA clone:ddc24m15, 3' ...   912   0.0    5
(BJ376821) Dictyostelium discoideum cDNA clone:ddc30g03, 3' ...   906   0.0    5
(BJ398425) Dictyostelium discoideum cDNA clone:dds12l11, 3' ...   904   0.0    3
(BJ375607) Dictyostelium discoideum cDNA clone:ddc19g07, 3' ...   904   0.0    4
(BJ342438) Dictyostelium discoideum cDNA clone:dda14a05, 3' ...   904   0.0    4
(BJ398298) Dictyostelium discoideum cDNA clone:dds11k21, 3' ...   902   0.0    4
(BJ373328) Dictyostelium discoideum cDNA clone:ddc2g23, 3' e...   902   0.0    5
(BJ373213) Dictyostelium discoideum cDNA clone:ddc1p22, 3' e...   900   0.0    4
(BJ376463) Dictyostelium discoideum cDNA clone:ddc28k13, 3' ...   890   0.0    5
(BJ400630) Dictyostelium discoideum cDNA clone:dds14h03, 3' ...   888   0.0    4
(BJ398439) Dictyostelium discoideum cDNA clone:dds12o11, 3' ...   886   0.0    5
(BJ376010) Dictyostelium discoideum cDNA clone:ddc20i19, 3' ...   886   0.0    3
(BJ429149) Dictyostelium discoideum cDNA clone:ddv2c16, 3' e...   884   0.0    5
(BJ372388) Dictyostelium discoideum cDNA clone:ddc12m12, 3' ...   884   0.0    5
(BJ400039) Dictyostelium discoideum cDNA clone:dds8g14, 3' e...   876   0.0    3
(BJ400251) Dictyostelium discoideum cDNA clone:dds9o08, 3' e...   864   0.0    4
(BJ375602) Dictyostelium discoideum cDNA clone:ddc19e09, 3' ...   864   0.0    4
(BJ399338) Dictyostelium discoideum cDNA clone:dds5c17, 3' e...   862   0.0    5
(BJ377906) Dictyostelium discoideum cDNA clone:ddc26j07, 3' ...   860   0.0    5
(BJ339963) Dictyostelium discoideum cDNA clone:dda11i04, 3' ...   860   0.0    4
(BJ344214) Dictyostelium discoideum cDNA clone:dda18d22, 3' ...   852   0.0    5
(BJ399933) Dictyostelium discoideum cDNA clone:dds8h06, 3' e...   844   0.0    5
(BJ347143) Dictyostelium discoideum cDNA clone:dda26b07, 3' ...   672   0.0    5
(BJ343915) Dictyostelium discoideum cDNA clone:dda17i16, 3' ...   906   0.0    3
(BJ373666) Dictyostelium discoideum cDNA clone:ddc4k08, 3' e...   908   0.0    3
(BJ375608) Dictyostelium discoideum cDNA clone:ddc19g08, 3' ...   678   0.0    5
(BJ400163) Dictyostelium discoideum cDNA clone:dds9d05, 3' e...   860   0.0    3
(BJ400505) Dictyostelium discoideum cDNA clone:dds13f13, 3' ...   918   0.0    3
(BJ372451) Dictyostelium discoideum cDNA clone:ddc12m13, 3' ...   900   0.0    2
(BJ374708) Dictyostelium discoideum cDNA clone:ddc16a01, 3' ...   898   0.0    2
(BJ399211) Dictyostelium discoideum cDNA clone:dds4e19, 3' e...   884   0.0    2
(BJ377105) Dictyostelium discoideum cDNA clone:ddc22j13, 3' ...   900   0.0    1
(BJ375745) Dictyostelium discoideum cDNA clone:ddc19g20, 3' ...   684   0.0    3
(BJ373912) Dictyostelium discoideum cDNA clone:ddc5h09, 3' e...   783   0.0    2
(BJ399202) Dictyostelium discoideum cDNA clone:dds4b19, 3' e...   795   0.0    1
(BJ347395) Dictyostelium discoideum cDNA clone:dda27a02, 3' ...   656   0.0    1
(BJ360864) Dictyostelium discoideum cDNA clone:ddc8f11, 5' e...   349   0.0    5
(BJ358462) Dictyostelium discoideum cDNA clone:ddc1l17, 5' e...   349   e-170  5
(BJ402284) Dictyostelium discoideum cDNA clone:dds16i05, 3' ...   529   e-145  1
(BJ377743) Dictyostelium discoideum cDNA clone:ddc25n18, 3' ...   511   e-140  1
(BJ429948) Dictyostelium discoideum cDNA clone:ddv5b16, 3' e...   297   e-127  3
(BJ376820) Dictyostelium discoideum cDNA clone:ddc30g02, 3' ...   446   e-120  1
(AU053936) Dictyostelium discoideum slug cDNA, clone SLK190.      418   e-112  1
(BJ328817) Dictyostelium discoideum cDNA clone:dda29k16, 5' ...   347   e-109  3
(AU272409) Dictyostelium discoideum gamete cDNA clone:FC-IC1...   283   1e-71  1
(AU072081) Dictyostelium discoideum slug cDNA, clone SSD374.       76   6e-16  2
(AU060505) Dictyostelium discoideum slug cDNA, clone SLK190.       44   3e-04  2
(EK293352) 1095462337870 Global-Ocean-Sampling_GS-31-01-01-1...    46   0.12   2
(AC194706) Zea mays chromosome 4 clone ZMMBBb-163I11; ZMMBBb...    50   0.26   1
(AC190774) Zea mays chromosome 4 clone ZMMBBb-368M16; ZMMBBb...    50   0.26   1
(CG689884) ZMMBBc0133O14f ZMMBBc (EcoRI) Zea mays subsp. may...    50   0.26   1
(BZ642107) OGAMO39TM ZM_0.7_1.5_KB Zea mays genomic clone ZM...    50   0.26   1
(BZ642098) OGAMO39TC ZM_0.7_1.5_KB Zea mays genomic clone ZM...    50   0.26   1
(EJ473407) 1095403426358 Global-Ocean-Sampling_GS-28-01-01-1...    42   0.36   2
(BJ414835) Dictyostelium discoideum cDNA clone:ddv20f16, 5' ...    32   0.70   3
(AC187019) Canis Familiaris chromosome 29, clone XX-120N4, c...    48   1.0    1
(AC147784) Canis Familiaris, clone XX-25F3, complete sequence.     48   1.0    1
(CU407288) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   1.0    1
(AC194057) Zea mays chromosome 8 clone CH201-22M24; ZMMBBc00...    48   1.0    1
(EJ482980) 1095403482048 Global-Ocean-Sampling_GS-28-01-01-1...    48   1.0    1
(EJ425599) 1093012270570 Global-Ocean-Sampling_GS-28-01-01-1...    48   1.0    1
(EJ214110) 1092351029167 Global-Ocean-Sampling_GS-27-01-01-1...    48   1.0    1
(ED904272) OA_CBa0068F01.r OA_CBa Oryza australiensis genomi...    48   1.0    1
(AL137191) Human chromosome 14 DNA sequence BAC R-1112J20 of...    36   1.3    7
(EJ979644) 1093022144796 Global-Ocean-Sampling_GS-30-02-01-1...    42   1.3    2
(EK284556) 1095462308352 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.3    2
(BD452780) Diagnosis of Diseases Associated with tumor suppr...    40   1.4    4
(AX251259) Sequence 227 from Patent WO0168912.                     40   1.4    4
(EJ860392) 1093017972986 Global-Ocean-Sampling_GS-30-02-01-1...    42   1.6    2
(BA000016) Clostridium perfringens str. 13 DNA, complete gen...    38   1.6    20
(BX649595) Zebrafish DNA sequence from clone RP71-81O21 in l...    44   2.5    2
(AC230985) Bos taurus clone CH240-493P4, WORKING DRAFT SEQUE...    44   2.7    4
(AX346177) Sequence 1248 from Patent WO0200928.                    42   3.4    4
(CQ575129) Sequence 2887 from Patent WO0171042.                    46   4.1    1
(AE013599) Drosophila melanogaster chromosome 2R, complete s...    46   4.1    1
(AC093046) Drosophila melanogaster, chromosome 2R, region 43...    46   4.1    1
(AC007301) Drosophila melanogaster, chromosome 2R, region 43...    46   4.1    1
(AC004283) Drosophila melanogaster DNA sequence (P1 DS05557 ...    46   4.1    1
(AL137183) Human DNA sequence from clone RP1-319D23 on chrom...    46   4.1    1
(AC226666) Monodelphis domestica clone VMRC18-517A12, WORKIN...    46   4.1    1
(AC213774) Zea mays chromosome 4 clone CH201-305L14; ZMMBBc0...    46   4.1    1
(AC205118) Zea mays chromosome 4 clone CH201-528O7; ZMMBBc05...    46   4.1    1
(AC020003) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    46   4.1    1
(ER567667) 1093015776429 Global-Ocean-Sampling_GS-36-01-01-2...    46   4.1    1

>(C94024) Dictyostelium discoideum slug cDNA, clone SSK715.
          Length = 723

 Score = 1178 bits (594), Expect(3) = 0.0
 Identities = 594/594 (100%)
 Strand = Plus / Plus


Query: 921  caaatgatatctctttaattaatgacccaagaccaaataaaaaattattagttttagatt 980
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122  caaatgatatctctttaattaatgacccaagaccaaataaaaaattattagttttagatt 181


Query: 981  tagatcatacaattttagattttaaagatcaagatgttgaaaatatgaaaagaccacatt 1040
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182  tagatcatacaattttagattttaaagatcaagatgttgaaaatatgaaaagaccacatt 241


Query: 1041 tagaagaatttttagtacaatcctatcaacattatgatattggaatttggtctcaaacta 1100
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242  tagaagaatttttagtacaatcctatcaacattatgatattggaatttggtctcaaacta 301


Query: 1101 gttggaaatggattgaaattaaattaacagagttgggattattaactaatccacgtttta 1160
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302  gttggaaatggattgaaattaaattaacagagttgggattattaactaatccacgtttta 361


Query: 1161 aaatttgttttgtaatggatcaaacattaatgtttaaggtaacaacctatagaaccatca 1220
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362  aaatttgttttgtaatggatcaaacattaatgtttaaggtaacaacctatagaaccatca 421


Query: 1221 atggtaaagagagaactaaaattaaacataatgtaaaagcattggaagtaatttggaaac 1280
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422  atggtaaagagagaactaaaattaaacataatgtaaaagcattggaagtaatttggaaac 481


Query: 1281 atcaacatttaggtaaattctttagtatgaaaaatactttacatgttgatgatctctcca 1340
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482  atcaacatttaggtaaattctttagtatgaaaaatactttacatgttgatgatctctcca 541


Query: 1341 aaaactttgcaatgaatccaaagaatggtgtacatgttccaccttttaaaattaaagatg 1400
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542  aaaactttgcaatgaatccaaagaatggtgtacatgttccaccttttaaaattaaagatg 601


Query: 1401 ctaaaaagtatggtgataatgtcttattccatctaacaaaatatttaaaatcaatttcaa 1460
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602  ctaaaaagtatggtgataatgtcttattccatctaacaaaatatttaaaatcaatttcaa 661


Query: 1461 atgaagaagatataactcttattgatcataaggaatggattagaaaaattttat 1514
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662  atgaagaagatataactcttattgatcataaggaatggattagaaaaattttat 715

 Score =  155 bits (78), Expect(3) = 0.0
 Identities = 81/82 (98%)
 Strand = Plus / Plus


Query: 799 aaaacaagtggtgataccgatgaggtattcaatgatttcgaatttgattatatcccagat 858
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1   aaaacaagtggtgataccgatgaggtattcaaggatttcgaatttgattatatcccagat 60


Query: 859 tctgatgaaatctctcatattg 880
           ||||||||||||||||||||||
Sbjct: 61  tctgatgaaatctctcatattg 82

 Score = 54.0 bits (27), Expect(3) = 0.0
 Identities = 27/27 (100%)
 Strand = Plus / Plus


Query: 894 tcaattacttgcaatgattgaacgttc 920
           |||||||||||||||||||||||||||
Sbjct: 96  tcaattacttgcaatgattgaacgttc 122

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,403,604,711
Number of extensions: 91030506
Number of successful extensions: 7744948
Number of sequences better than 10.0: 132
Length of query: 1587
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1563
Effective length of database: 97,308,875,965
Effective search space: 152093773133295
Effective search space used: 152093773133295
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.30
Homology vs Protein 
Query= Contig-U11615-1 (Contig-U11615-1Q) /CSM_Contig/Contig-U11615-1Q.Seq.d
         (1587 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116984_106(AC116984|pid:none) Dictyostelium discoideum chromos...   406   e-171
(Q8BGR9) RecName: Full=Ubiquitin-like domain-containing CTD phos...   149   3e-51
AY893165_1(AY893165|pid:none) Synthetic construct Homo sapiens c...   150   4e-51
(Q2KJD7) RecName: Full=Ubiquitin-like domain-containing CTD phos...   150   4e-51
(Q28EX9) RecName: Full=Ubiquitin-like domain-containing CTD phos...   152   6e-49
(Q8W3M6) RecName: Full=Ubiquitin-like domain-containing CTD phos...   139   2e-43
CP001327_139(CP001327|pid:none) Micromonas sp. RCC299 chromosome...   136   1e-41
EU961853_1(EU961853|pid:none) Zea mays clone 238650 ubiquitin-li...   149   2e-40
AC183497_2(AC183497|pid:none) Brassica oleracea, *** SEQUENCING ...   132   3e-40
AE017344_321(AE017344|pid:none) Cryptococcus neoformans var. neo...   145   4e-39
AE014297_3394(AE014297|pid:none) Drosophila melanogaster chromos...   129   1e-38
FN357429_7(FN357429|pid:none) Schistosoma mansoni genome sequenc...   106   1e-28
CR954201_293(CR954201|pid:none) Ostreococcus tauri strain OTTH05...   129   3e-28
AK342082_1(AK342082|pid:none) Acyrthosiphon pisum ACYPI008191 mR...   123   2e-26
BT077279_1(BT077279|pid:none) Caligus rogercresseyi clone crog-e...    82   2e-25
EF502302_1(EF502302|pid:none) Arabidopsis lyrata subsp. lyrata i...    81   9e-14
EF502284_1(EF502284|pid:none) Arabidopsis halleri subsp. halleri...    81   9e-14
EF502316_1(EF502316|pid:none) Arabidopsis lyrata subsp. petraea ...    76   3e-12
EF502311_1(EF502311|pid:none) Arabidopsis lyrata subsp. petraea ...    72   6e-11
BC002236_1(BC002236|pid:none) Mus musculus ubiquitin-like domain...    70   3e-10
EF502317_1(EF502317|pid:none) Arabidopsis lyrata subsp. petraea ...    61   1e-07
CU640366_1296(CU640366|pid:none) Podospora anserina genomic DNA ...    59   4e-07
AY815021_1(AY815021|pid:none) Schistosoma japonicum SJCHGC02906 ...    59   4e-07
DQ643392_104(DQ643392|pid:none) Aedes taeniorhynchus iridescent ...    55   9e-06
EF502295_1(EF502295|pid:none) Arabidopsis lyrata subsp. lyrata i...    53   4e-05
EF502285_1(EF502285|pid:none) Arabidopsis lyrata subsp. petraea ...    53   4e-05
(Q92353) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 6; ...    50   3e-04
CP000585_3(CP000585|pid:none) Ostreococcus lucimarinus CCE9901 c...    49   4e-04
EF133465_108(EF133465|pid:none) Heliothis virescens ascovirus 3e...    47   0.002
CP001326_597(CP001326|pid:none) Micromonas sp. RCC299 chromosome...    47   0.003
AY013245_7(AY013245|pid:none) Oryza sativa (japonica cultivar-gr...    46   0.003
AC141107_17(AC141107|pid:none) Medicago truncatula clone mth2-34...    45   0.007
AM398843_109(AM398843|pid:none) Spodoptera frugiperda ascovirus ...    45   0.007
AM442494_1(AM442494|pid:none) Vitis vinifera contig VV78X059448....    45   0.010
CP001114_1065(CP001114|pid:none) Deinococcus deserti VCD115, com...    44   0.017
AY380826_147(AY380826|pid:none) Lymphocystis disease virus - iso...    42   0.048
AM270284_15(AM270284|pid:none) Aspergillus niger contig An12c028...    42   0.083
AC087326_9(AC087326|pid:none) Trypanosoma brucei chromosome 4 cl...    41   0.11
CR382130_117(CR382130|pid:none) Yarrowia lipolytica strain CLIB1...    41   0.14
CP001576_118(CP001576|pid:none) Micromonas sp. RCC299 chromosome...    40   0.24
AP008216_747(AP008216|pid:none) Oryza sativa (japonica cultivar-...    40   0.31
EF144673_1(EF144673|pid:none) Populus trichocarpa clone WS01116_...    39   0.41
DQ517337_93(DQ517337|pid:none) Trichoplusia ni ascovirus 2c, com...    39   0.41
CR548612_84(CR548612|pid:none) Paramecium tetraurelia macronucle...    39   0.41
AM494957_128(AM494957|pid:none) Leishmania braziliensis chromoso...    39   0.53
EF103394_1(EF103394|pid:none) Haliotis discus discus ubiquitin-l...    39   0.70
AM494968_14(AM494968|pid:none) Leishmania braziliensis chromosom...    39   0.70
AY751577_1(AY751577|pid:none) Phytophthora sojae nuclear LIM fac...    38   0.91
(P0C895) RecName: Full=LRR repeats and ubiquitin-like domain-con...    38   0.91
CR380957_447(CR380957|pid:none) Candida glabrata strain CBS138 c...    38   0.91
U32223_1(U32223|pid:none) Caenorhabditis elegans tRNA-guanine tr...    38   1.2
(Q17361) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 14;...    38   1.2
CR382139_412(CR382139|pid:none) Debaryomyces hansenii strain CBS...    38   1.2
AM502249_158(AM502249|pid:none) Leishmania infantum chromosome 31.     38   1.2
CU633445_62(CU633445|pid:none) Podospora anserina genomic DNA ch...    38   1.2
CP001033_1126(CP001033|pid:none) Streptococcus pneumoniae CGSP14...    37   1.6
AE005672_1104(AE005672|pid:none) Streptococcus pneumoniae TIGR4,...    37   1.6
AY954817_1(AY954817|pid:none) Arabidopsis thaliana hypothetical ...    37   1.6
AY144454_1(AY144454|pid:none) Arabidopsis thaliana hypothetical ...    37   1.6
BX842617_1(BX842617|pid:none) Neurospora crassa DNA linkage grou...    37   1.6
CP000918_1148(CP000918|pid:none) Streptococcus pneumoniae 70585,...    37   1.6
CP000919_1035(CP000919|pid:none) Streptococcus pneumoniae JJA, c...    37   1.6
AM502252_120(AM502252|pid:none) Leishmania infantum chromosome 34.     37   2.0
AB028618_21(AB028618|pid:none) Arabidopsis thaliana genomic DNA,...    37   2.0
AC006919_16(AC006919|pid:none) Arabidopsis thaliana chromosome 2...    37   2.0
(P43593) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 6; ...    37   2.0
AE014187_630(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    37   2.0
FM992689_179(FM992689|pid:none) Candida dubliniensis CD36 chromo...    37   2.0
T18721(T18721)hypothetical protein B0379.4 - Caenorhabditis eleg...    37   2.7
Z83316_7(Z83316|pid:none) Caenorhabditis elegans Cosmid B0379, c...    37   2.7
Z83316_8(Z83316|pid:none) Caenorhabditis elegans Cosmid B0379, c...    37   2.7
Z83316_6(Z83316|pid:none) Caenorhabditis elegans Cosmid B0379, c...    37   2.7
CT005268_122(CT005268|pid:none) Leishmania major strain Friedlin...    37   2.7
BC161365_1(BC161365|pid:none) Xenopus tropicalis hypothetical pr...    37   2.7
EF147487_1(EF147487|pid:none) Populus trichocarpa clone WS01231_...    36   3.5
(Q78JW9) RecName: Full=Ubiquitin domain-containing protein UBFD1...    36   3.5
CR954212_284(CR954212|pid:none) Ostreococcus tauri strain OTTH05...    36   4.5
AY751569_1(AY751569|pid:none) Phytophthora infestans putative nu...    36   4.5
CP000936_1171(CP000936|pid:none) Streptococcus pneumoniae Hungar...    35   5.9
AC008030_16(AC008030|pid:none) Arabidopsis thaliana chromosome I...    35   5.9
AJ871339_1(AJ871339|pid:none) Nyctotherus ovalis partial gene fo...    35   5.9
(Q10169) RecName: Full=Deubiquitination-protection protein dph1;...    35   5.9
BT042785_1(BT042785|pid:none) Zea mays full-length cDNA clone ZM...    35   7.7
FM992691_563(FM992691|pid:none) Candida dubliniensis CD36 chromo...    35   7.7
EU967553_1(EU967553|pid:none) Zea mays clone 304391 import inner...    35   7.7
AK092696_1(AK092696|pid:none) Homo sapiens cDNA FLJ35377 fis, cl...    35   7.7
AJ320541_1(AJ320541|pid:none) Candida albicans fab1 gene for pho...    35   7.7
BC149886_1(BC149886|pid:none) Bos taurus ubiquitin family domain...    35   7.7

>AC116984_106(AC116984|pid:none) Dictyostelium discoideum chromosome 2
            map 2567470-3108875 strain AX4, complete sequence.
          Length = 399

 Score =  406 bits (1043), Expect(2) = e-171
 Identities = 194/194 (100%), Positives = 194/194 (100%)
 Frame = +2

Query: 923  NDISLINDPRPNKKLLVLDLDHTILDFKDQDVENMKRPHLEEFLVQSYQHYDIGIWSQTS 1102
            NDISLINDPRPNKKLLVLDLDHTILDFKDQDVENMKRPHLEEFLVQSYQHYDIGIWSQTS
Sbjct: 203  NDISLINDPRPNKKLLVLDLDHTILDFKDQDVENMKRPHLEEFLVQSYQHYDIGIWSQTS 262

Query: 1103 WKWIEIKLTELGLLTNPRFKICFVMDQTLMFKVTTYRTINGKERTKIKHNVKALEVIWKH 1282
            WKWIEIKLTELGLLTNPRFKICFVMDQTLMFKVTTYRTINGKERTKIKHNVKALEVIWKH
Sbjct: 263  WKWIEIKLTELGLLTNPRFKICFVMDQTLMFKVTTYRTINGKERTKIKHNVKALEVIWKH 322

Query: 1283 QHLGKFFSMKNTLHVDDLSKNFAMNPKNGVHVPPFKIKDAKKYGDNVLFHLTKYLKSISN 1462
            QHLGKFFSMKNTLHVDDLSKNFAMNPKNGVHVPPFKIKDAKKYGDNVLFHLTKYLKSISN
Sbjct: 323  QHLGKFFSMKNTLHVDDLSKNFAMNPKNGVHVPPFKIKDAKKYGDNVLFHLTKYLKSISN 382

Query: 1463 EEDITLIDHKEWIR 1504
            EEDITLIDHKEWIR
Sbjct: 383  EEDITLIDHKEWIR 396

 Score =  220 bits (561), Expect(2) = e-171
 Identities = 113/121 (93%), Positives = 115/121 (95%)
 Frame = +1

Query: 559 TKWNGKEYKVLISKSSTVFDLKRQLETMTNVLSKRQKILGLSKGKQPTDEMIIESLSIQD 738
           TKWNGKEYKVLISKSSTVFDLKRQLETMTNVLSKRQKILGLSKGKQPTDEMIIESLSIQD
Sbjct: 83  TKWNGKEYKVLISKSSTVFDLKRQLETMTNVLSKRQKILGLSKGKQPTDEMIIESLSIQD 142

Query: 739 NHSIIMMGYPQSQILLLTFPKTSGDTDEVFNDFEFDYIPDSDEISHIEKNKNQLLAMIER 918
           NHSIIMMG P+S I +   PKTSGDTDEVFNDFEFDYIPDSDEISHIEKNKNQLLAMIER
Sbjct: 143 NHSIIMMGTPESNI-IADVPKTSGDTDEVFNDFEFDYIPDSDEISHIEKNKNQLLAMIER 201

Query: 919 S 921
           S
Sbjct: 202 S 202

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,700,792,987
Number of extensions: 31026320
Number of successful extensions: 72007
Number of sequences better than 10.0: 88
Number of HSP's gapped: 71908
Number of HSP's successfully gapped: 103
Length of query: 529
Length of database: 1,051,180,864
Length adjustment: 133
Effective length of query: 396
Effective length of database: 620,718,517
Effective search space: 245804532732
Effective search space used: 245804532732
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.71  gvh: 0.46  alm: 0.12  top: 0.03  tms: 0.07  mit: 0.46  mip: 0.00
 nuc: 0.23  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: mitochondrial
	 20.0 %: cytoplasmic
	 20.0 %: endoplasmic reticulum
	 16.0 %: Golgi
	 16.0 %: nuclear
	  4.0 %: extracellular, including cell wall

>> prediction for Contig-U11615-1 is mit
VS (DIR, S) 0
VH (FL, L) 1
VF (FL, S) 2
AH (FL, L) 2
AF (FL, S) 5
SL (DIR, L) 1
SS (DIR, S) 3
SH (FL, L) 9
SF (FL, S) 15
CH (FL, L) 11
CF (FL, S) 20
FCL (DIR, L) 0
FC (DIR, S) 1
FC-IC (SUB) 1