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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U11589-1
Contig ID Contig-U11589-1
Contig update 2002.12.18
Contig sequence 
>Contig-U11589-1 (Contig-U11589-1Q) /CSM_Contig/Contig-U11589-1Q.Seq.d
TAACAACAGTAATAGTGGTTCAATAAAAATNAACCAATTAAAAGAGATTA
TTTAACATTAGAAGATTTAAAATTTGAAAATTCAAGTCAACTAATTTTAC
ATTTTCAACCAAATAATAATTGTCATAGTAGTAGTAATTCTTCATCATCA
GCGTCGTCATCAGATCAATCTTCTTCACATCATAATCCAAAATTAATGAA
TAAAATTAGTAAAAAGATTGGTAATATTTTTAAAAAGAAAACACATCCTG
GTAGATCTTATTCAGATCCATCTTATTATCAAAATAATGGAAGTAGTAAC
AACAATAATAGTAATGGTAATGGTGGTAATAATGGTAATCAAAGTGGTGG
AGCAAGTACAACTAATGGTGGTATGAATATAAGAGATAATAGTTC-----
-----ATAAAGTAATAAAGAAACCCTATCAAGAGGAGAAAGATGAACCAA
AGGAACCACGTGAAGACATTGTTGTCGCCAATGAACAGTGGGATAATCAT
ATTAAACGTAATCAATCGATCATTGTCAATCTCTTTCAAGGTCAATATAA
ATCAACATTGGTTTGTGCAAAATGTTCAAAAGTTAGTATCACCTTTGACC
CCTATATGTTTGTCACTCTACCCATACCTGTACCAACCGAGAGACTATTC
GATGTGTTACTCTTTCGTAGGAAGCCACAAATGGGTTCAGAAGCATTGGG
TCCCTGACCCAAATGGTATCTACTGTCTAAACAATGCAATGTCACCAATT
AAATATTGTCTAAAGCTACCAAAACGTGAAGATGTAGAAACTTTACGTGT
TGAACTTTCAAAGATCGTTGGAATTGAATCATCTTGTATTGCATTGGCTG
AAACTTTCAAAAATAGAATCTACACCTTTTTAAATGATCAAAAGAATCTC
ATCTCCATCAAAGATAAAGATGTTACAATAGCCTATGAATTACCACATGC
TGGTGATGATATCTCAAGAATTCATGTTATGCATAGAAAAAAGAATGATC
TGACCCTACTTCCTTATGTATTATTATTAAATTATTACTGAAACAACTTG
TAAAGATTTATATAGGATGGTTTGGGAACGTGTTGGTCATAGAGTTAAAA
AAGGTTGGAAATCTGCATTANAACAAAAACTTTCAA
Gap gap included
Contig length 1126
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 1921591
End point 1922720
Strand (PLUS/MINUS) PLUS
Number of clones 3
Number of EST 4
Link to clone list U11589
List of clone(s) 

est1=CFG851F,1,396
est2=CHP737Z,397,1066
est3=CFG851Z,406,1058
est4=CHJ750Z,581,1128
Translated Amino Acid sequence 
*qq**WFNKNXPIKRDYLTLEDLKFENSSQLILHFQPNNNCHSSSNSSSSASSSDQSSSH
HNPKLMNKISKKIGNIFKKKTHPGRSYSDPSYYQNNGSSNNNNSNGNGGNNGNQSGGAST
TNGGMNIRDNS---

---KVIKKPYQEEKDEPKEPREDIVVANEQWDNHIKRNQSIIVNLFQGQYKSTLVCAKCS
KVSITFDPYMFVTLPIPVPTERLFDVLLFRRKPQMGSEALGP*pkwyllskqcnvtn*il
skatkt*rcrnftc*tfkdrwn*iilycig*nfqk*nlhlfk*skeshlhqr*rcynsl*
ittcw**ylknscya*kke*sdptslciiiklllkqlvkiyigwfgnvlvielkkvgnlh
xnknfq
Translated Amino Acid sequence (All Frames) 
Frame A:
*qq**WFNKNXPIKRDYLTLEDLKFENSSQLILHFQPNNNCHSSSNSSSSASSSDQSSSH
HNPKLMNKISKKIGNIFKKKTHPGRSYSDPSYYQNNGSSNNNNSNGNGGNNGNQSGGAST
TNGGMNIRDNS---

---ik**rnpikrrkmnqrnhvktllspmnsgiiilnvinrslsisfkvninqhwfvqnv
qklvspltpiclslypylyqprdysmcysfvgshkwvqkhwvpdpngiyclnnamspiky
clklpkredvetlrvelskivgiesscialaetfknriytflndqknlisikdkdvtiay
elphagddisrihvmhrkkndltllpyvlllnyy*nnl*rfi*dglgtcws*s*krleic
ixtktf

Frame B:
nnsnsgsikxnqlkeii*h*ki*nlkiqvn*fyifnqiiivivvvilhhqrrhqinllhi
iiqn**iklvkrlviflkrkhilvdliqihliikimevvttiivmvmvvimvikvveqvq
lmvv*i*eiiv---

---*snketlsrger*tkgtt*rhccrq*tvg*sy*t*sidhcqslsrsi*iniglckmf
ks*yhl*plyvchsthtctnretircvtls*eatngfrsigsltqmvstv*tmqchqlni
v*syqnvkm*klyvlnfqrslelnhlvlhwlklskiestpf*mikrisspskikmlq*pm
nyhmlvmisqefmlciekrmi*pyflmyyy*iitettckdlyrmvwervghrvkkgwksa
lxqkls

Frame C:
ttvivvq*kxtn*krlfnirrfki*kfkstnftfstk**ls****ffiisvvirsiffts
*skine*n**kdw*yf*kentsw*ilfrsillsk*wk**qq***w*ww**w*skwwskyn
*wwyeykr**f---

---KVIKKPYQEEKDEPKEPREDIVVANEQWDNHIKRNQSIIVNLFQGQYKSTLVCAKCS
KVSITFDPYMFVTLPIPVPTERLFDVLLFRRKPQMGSEALGP*pkwyllskqcnvtn*il
skatkt*rcrnftc*tfkdrwn*iilycig*nfqk*nlhlfk*skeshlhqr*rcynsl*
ittcw**ylknscya*kke*sdptslciiiklllkqlvkiyigwfgnvlvielkkvgnlh
xnknfq
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U11589-1 (Contig-U11589-1Q)
/CSM_Contig/Contig-U11589-1Q.Seq.d
         (1136 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U11589-1 (Contig-U11589-1Q) /CSM_Contig/Conti...  2181  0.0
Contig-U11862-1 (Contig-U11862-1Q) /CSM_Contig/Conti...    50  5e-06
Contig-U12435-1 (Contig-U12435-1Q) /CSM_Contig/Conti...    48  2e-05
Contig-U12494-1 (Contig-U12494-1Q) /CSM_Contig/Conti...    46  8e-05
Contig-U12474-1 (Contig-U12474-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U09122-1 (Contig-U09122-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U08884-1 (Contig-U08884-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U13206-1 (Contig-U13206-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U12060-1 (Contig-U12060-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U11770-1 (Contig-U11770-1Q) /CSM_Contig/Conti...    40  0.005

>Contig-U11589-1 (Contig-U11589-1Q) /CSM_Contig/Contig-U11589-1Q.Seq.d
          Length = 1136

 Score = 2181 bits (1100), Expect = 0.0
 Identities = 1136/1136 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1    taacaacagtaatagtggttcaataaaaatnaaccaattaaaagagattatttaacatta 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    taacaacagtaatagtggttcaataaaaatnaaccaattaaaagagattatttaacatta 60

                                                                        
Query: 61   gaagatttaaaatttgaaaattcaagtcaactaattttacattttcaaccaaataataat 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   gaagatttaaaatttgaaaattcaagtcaactaattttacattttcaaccaaataataat 120

                                                                        
Query: 121  tgtcatagtagtagtaattcttcatcatcagcgtcgtcatcagatcaatcttcttcacat 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121  tgtcatagtagtagtaattcttcatcatcagcgtcgtcatcagatcaatcttcttcacat 180

                                                                        
Query: 181  cataatccaaaattaatgaataaaattagtaaaaagattggtaatatttttaaaaagaaa 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181  cataatccaaaattaatgaataaaattagtaaaaagattggtaatatttttaaaaagaaa 240

                                                                        
Query: 241  acacatcctggtagatcttattcagatccatcttattatcaaaataatggaagtagtaac 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241  acacatcctggtagatcttattcagatccatcttattatcaaaataatggaagtagtaac 300

                                                                        
Query: 301  aacaataatagtaatggtaatggtggtaataatggtaatcaaagtggtggagcaagtaca 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301  aacaataatagtaatggtaatggtggtaataatggtaatcaaagtggtggagcaagtaca 360

                                                                        
Query: 361  actaatggtggtatgaatataagagataatagttcnnnnnnnnnnataaagtaataaaga 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361  actaatggtggtatgaatataagagataatagttcnnnnnnnnnnataaagtaataaaga 420

                                                                        
Query: 421  aaccctatcaagaggagaaagatgaaccaaaggaaccacgtgaagacattgttgtcgcca 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421  aaccctatcaagaggagaaagatgaaccaaaggaaccacgtgaagacattgttgtcgcca 480

                                                                        
Query: 481  atgaacagtgggataatcatattaaacgtaatcaatcgatcattgtcaatctctttcaag 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481  atgaacagtgggataatcatattaaacgtaatcaatcgatcattgtcaatctctttcaag 540

                                                                        
Query: 541  gtcaatataaatcaacattggtttgtgcaaaatgttcaaaagttagtatcacctttgacc 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541  gtcaatataaatcaacattggtttgtgcaaaatgttcaaaagttagtatcacctttgacc 600

                                                                        
Query: 601  cctatatgtttgtcactctacccatacctgtaccaaccgagagactattcgatgtgttac 660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601  cctatatgtttgtcactctacccatacctgtaccaaccgagagactattcgatgtgttac 660

                                                                        
Query: 661  tctttcgtaggaagccacaaatgggttcagaagcattgggtccctgacccaaatggtatc 720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661  tctttcgtaggaagccacaaatgggttcagaagcattgggtccctgacccaaatggtatc 720

                                                                        
Query: 721  tactgtctaaacaatgcaatgtcaccaattaaatattgtctaaagctaccaaaacgtgaa 780
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721  tactgtctaaacaatgcaatgtcaccaattaaatattgtctaaagctaccaaaacgtgaa 780

                                                                        
Query: 781  gatgtagaaactttacgtgttgaactttcaaagatcgttggaattgaatcatcttgtatt 840
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781  gatgtagaaactttacgtgttgaactttcaaagatcgttggaattgaatcatcttgtatt 840

                                                                        
Query: 841  gcattggctgaaactttcaaaaatagaatctacacctttttaaatgatcaaaagaatctc 900
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841  gcattggctgaaactttcaaaaatagaatctacacctttttaaatgatcaaaagaatctc 900

                                                                        
Query: 901  atctccatcaaagataaagatgttacaatagcctatgaattaccacatgctggtgatgat 960
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901  atctccatcaaagataaagatgttacaatagcctatgaattaccacatgctggtgatgat 960

                                                                        
Query: 961  atctcaagaattcatgttatgcatagaaaaaagaatgatctgaccctacttccttatgta 1020
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961  atctcaagaattcatgttatgcatagaaaaaagaatgatctgaccctacttccttatgta 1020

                                                                        
Query: 1021 ttattattaaattattactgaaacaacttgtaaagatttatataggatggtttgggaacg 1080
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 ttattattaaattattactgaaacaacttgtaaagatttatataggatggtttgggaacg 1080

                                                                    
Query: 1081 tgttggtcatagagttaaaaaaggttggaaatctgcattanaacaaaaactttcaa 1136
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 tgttggtcatagagttaaaaaaggttggaaatctgcattanaacaaaaactttcaa 1136


>Contig-U11862-1 (Contig-U11862-1Q) /CSM_Contig/Contig-U11862-1Q.Seq.d
          Length = 1881

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                     
Query: 315  tggtaatggtggtaataatggtaat 339
            |||||||||||||||||||||||||
Sbjct: 1099 tggtaatggtggtaataatggtaat 1123


>Contig-U12435-1 (Contig-U12435-1Q) /CSM_Contig/Contig-U12435-1Q.Seq.d
          Length = 1808

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                
Query: 304  aataatagtaatggtaatggtggtaataatggtaat 339
            |||||| ||||||||||||||||||||  |||||||
Sbjct: 1587 aataatggtaatggtaatggtggtaatggtggtaat 1622


 Score = 32.2 bits (16), Expect = 1.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                            
Query: 324  tggtaataatggtaat 339
            ||||||||||||||||
Sbjct: 1583 tggtaataatggtaat 1598


 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                           
Query: 127  agtagtagtaattct 141
            |||||||||||||||
Sbjct: 1515 agtagtagtaattct 1529


 Score = 30.2 bits (15), Expect = 5.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                           
Query: 315  tggtaatggtggtaa 329
            |||||||||||||||
Sbjct: 1616 tggtaatggtggtaa 1630


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 29,085
Number of Sequences: 6905
Number of extensions: 29085
Number of successful extensions: 2740
Number of sequences better than 10.0: 386
length of query: 1136
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1120
effective length of database: 5,564,391
effective search space: 6232117920
effective search space used: 6232117920
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.25
Homology vs DNA 
Query= Contig-U11589-1 (Contig-U11589-1Q) /CSM_Contig/Contig-U11589-1Q.Seq.d
         (1136 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ383535) Dictyostelium discoideum cDNA clone:ddc53j09, 3' ...  1078   0.0    2
(BJ372857) Dictyostelium discoideum cDNA clone:ddc14f14, 3' ...   581   0.0    4
(BJ381439) Dictyostelium discoideum cDNA clone:ddc41d13, 3' ...   662   0.0    3
(BJ359428) Dictyostelium discoideum cDNA clone:ddc14f14, 5' ...   367   e-139  3
(AC109522) Rattus norvegicus clone CH230-3M3, *** SEQUENCING...    52   0.047  1
(EB139187) 010701AAZA003378HT (AAZA) M9 xylem Malus x domest...    52   0.047  1
(EB137000) 010611AAYA001779HT (AAYA) Royal Gala 126 DAFB fru...    52   0.047  1
(BM389657) UI-R-CN1-cjo-m-07-0-UI.s1 UI-R-CN1 Rattus norvegi...    52   0.047  1
(AL288176) Tetraodon nigroviridis genome survey sequence PUC...    50   0.19   1
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124...    36   0.28   9
(AC221992) Bos taurus clone CH240-375A13, WORKING DRAFT SEQU...    48   0.73   1
(AC221174) Bos taurus clone CH240-396A6, WORKING DRAFT SEQUE...    48   0.73   1
(EA169734) Sequence 34049 from patent US 7214786.                  46   1.1    2
(CC156997) ig16h04.g1 WGS-ZmaysF (DH5a methyl filtered) Zea ...    36   1.3    3
(AY107773) Zea mays PCO137126 mRNA sequence.                       36   1.7    3
(EI285377) GM_WBc0004N07.r GM_WBc Glycine max genomic clone ...    44   2.5    2
(AC189288) Brassica rapa subsp. pekinensis clone KBrB025K04,...    36   2.7    5
(EU626553) Triticum urartu clone BAC 261N5, complete sequence.     40   2.8    3
(DQ811787) PRCV ISU-1, complete genome.                            46   2.9    1
(AM434400) Vitis vinifera contig VV78X049740.5, whole genome...    46   2.9    1
(CZ882437) OC__Ba0285H21.f OC__Ba Oryza coarctata genomic cl...    46   2.9    1
(CZ839648) OC__Ba0224E11.f OC__Ba Oryza coarctata genomic cl...    46   2.9    1
(CZ823079) OC__Ba0202D04.r OC__Ba Oryza coarctata genomic cl...    46   2.9    1
(CZ821563) OC__Ba0200D01.f OC__Ba Oryza coarctata genomic cl...    46   2.9    1
(CZ802577) OC__Ba0174I21.f OC__Ba Oryza coarctata genomic cl...    46   2.9    1
(CK285959) EST748681 Nicotiana benthamiana mixed tissue cDNA...    46   2.9    1
(CK281183) EST743905 Nicotiana benthamiana mixed tissue cDNA...    46   2.9    1
(CK281182) EST743904 Nicotiana benthamiana mixed tissue cDNA...    46   2.9    1
(CK280487) EST743209 Nicotiana benthamiana mixed tissue cDNA...    46   2.9    1
(CK280486) EST743208 Nicotiana benthamiana mixed tissue cDNA...    46   2.9    1
(FK838422) K01142E09 Karenia brevis Multi-strain Library Kar...    46   2.9    1
(EX958792) CAGO1119.rev CAGO Karenia brevis Karbr Stressed (...    46   2.9    1
(EX867877) AUAO2659.rev AUAO Karenia brevis Karbr Dark-phase...    46   2.9    1
(CP000865) Acinetobacter baumannii ACICU plasmid pACICU2, co...    46   2.9    1
(AC198582) Spermophilus tridecemlineatus clone VMRC20-645D19...    44   3.1    3
(AC177604) Strongylocentrotus purpuratus clone R3-1023L14, W...    38   4.8    6
(AC115684) Dictyostelium discoideum chromosome 2 map 3108975...    32   6.0    8
(BX248231) Zebrafish DNA sequence from clone CH211-137C4 in ...    44   6.0    2
(AC159567) Otolemur garnettii clone CH256-366N13, WORKING DR...    40   6.1    6
(AC149027) Alligator mississippiensis clone VMRC8-346L1, WOR...    40   7.2    4
(AC165135) Medicago truncatula clone mth2-20f2, complete seq...    32   9.0    9

>(BJ383535) Dictyostelium discoideum cDNA clone:ddc53j09, 3' end,
           single read.
          Length = 673

 Score = 1078 bits (544), Expect(2) = 0.0
 Identities = 553/557 (99%)
 Strand = Plus / Minus


Query: 406 ataaagtaataaagaaaccctatcaagaggagaaagatgaaccaaaggaaccacgtgaag 465
           |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 ataaagtaataaagaacccntatcaagaggagaaagatgaaccaaaggaaccacgtgaag 614


Query: 466 acattgttgtcgccaatgaacagtgggataatcatattaaacgtaatcaatcgatcattg 525
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 acattgttgtcgccaatgaacagtgggataatcatattaaacgtaatcaatcgatcattg 554


Query: 526 tcaatctctttcaaggtcaatataaatcaacattggtttgtgcaaaatgttcaaaagtta 585
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tcaatctctttcaaggtcaatataaatcaacattggtttgtgcaaaatgttcaaaagtta 494


Query: 586 gtatcacctttgacccctatatgtttgtcactctacccatacctgtaccaaccgagagac 645
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gtatcacctttgacccctatatgtttgtcactctacccatacctgtaccaaccgagagac 434


Query: 646 tattcgatgtgttactctttcgtaggaagccacaaatgggttcagaagcattgggtccct 705
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tattcgatgtgttactctttcgtaggaagccacaaatgggttcagaagcattgggtccct 374


Query: 706 gacccaaatggtatctactgtctaaacaatgcaatgtcaccaattaaatattgtctaaag 765
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gacccaaatggtatntactgtctaaacaatgcaatgtcaccaattaaatattgtctaaag 314


Query: 766 ctaccaaaacgtgaagatgtagaaactttacgtgttgaactttcaaagatcgttggaatt 825
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ctaccaaaacgtgaagatgtagaaactttacgtgttgaactttcaaagatcgttggaatt 254


Query: 826 gaatcatcttgtattgcattggctgaaactttcaaaaatagaatctacacctttttaaat 885
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 253 gaatcatcttgtattgcattggctgaaactttcaaaaatagaatntacacctttttaaat 194


Query: 886 gatcaaaagaatctcatctccatcaaagataaagatgttacaatagcctatgaattacca 945
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 gatcaaaagaatctcatctccatcaaagataaagatgttacaatagcctatgaattacca 134


Query: 946 catgctggtgatgatat 962
           |||||||||||||||||
Sbjct: 133 catgctggtgatgatat 117

 Score =  196 bits (99), Expect(2) = 0.0
 Identities = 99/99 (100%)
 Strand = Plus / Minus


Query: 963  ctcaagaattcatgttatgcatagaaaaaagaatgatctgaccctacttccttatgtatt 1022
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115  ctcaagaattcatgttatgcatagaaaaaagaatgatctgaccctacttccttatgtatt 56


Query: 1023 attattaaattattactgaaacaacttgtaaagatttat 1061
            |||||||||||||||||||||||||||||||||||||||
Sbjct: 55   attattaaattattactgaaacaacttgtaaagatttat 17

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,180,692,568
Number of extensions: 74217847
Number of successful extensions: 5660607
Number of sequences better than 10.0: 41
Length of query: 1136
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1112
Effective length of database: 97,308,875,965
Effective search space: 108207470073080
Effective search space used: 108207470073080
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.30
Homology vs Protein 
Query= Contig-U11589-1 (Contig-U11589-1Q) /CSM_Contig/Contig-U11589-1Q.Seq.d
         (1136 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FB914696_1(FB914696|pid:none) Sequence 133969 from Patent WO2008...    80   2e-21
BT058766_1(BT058766|pid:none) Salmo salar clone ssal-rgf-501-332...    88   1e-20
BC042353_1(BC042353|pid:none) Xenopus laevis similar to ubiquiti...    89   1e-19
BC166460_1(BC166460|pid:none) Rattus norvegicus ubiquitin specif...    86   2e-19
BC066180_1(BC066180|pid:none) Mus musculus ubiquitin specific pe...    88   3e-19
AK089425_1(AK089425|pid:none) Mus musculus B6-derived CD11 +ve d...    88   3e-19
AK169372_1(AK169372|pid:none) Mus musculus 17 days embryo kidney...    88   3e-19
(P35123) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 4; ...    88   3e-19
AF026469_1(AF026469|pid:none) Mus musculus ubiquitin-specific pr...    88   3e-19
BC140849_1(BC140849|pid:none) Homo sapiens ubiquitin specific pe...    79   3e-19
CR858432_1(CR858432|pid:none) Pongo abelii mRNA; cDNA DKFZp468L0...    79   3e-19
BC063668_1(BC063668|pid:none) Homo sapiens ubiquitin specific pe...    79   3e-19
AB073597_1(AB073597|pid:none) Homo sapiens usp11 mRNA for deubiq...    79   3e-19
I58376(I58376)hypothetical protein unp - mouse                         88   3e-19
AK220512_1(AK220512|pid:none) Mus musculus mRNA for mKIAA4155 pr...    88   3e-19
AK294635_1(AK294635|pid:none) Homo sapiens cDNA FLJ61237 complet...    79   3e-19
AK164245_1(AK164245|pid:none) Mus musculus 9 days embryo whole b...    88   3e-19
BC011341_1(BC011341|pid:none) Mus musculus ubiquitin specific pe...    88   4e-19
BC142473_1(BC142473|pid:none) Bos taurus ubiquitin specific pept...    79   4e-19
FB914698_1(FB914698|pid:none) Sequence 133971 from Patent WO2008...    82   2e-18
BC000350_1(BC000350|pid:none) Homo sapiens ubiquitin specific pe...    75   4e-18
(Q9C585) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 8; ...    81   7e-18
CP000581_329(CP000581|pid:none) Ostreococcus lucimarinus CCE9901...    78   7e-18
FB914692_1(FB914692|pid:none) Sequence 133965 from Patent WO2008...    81   7e-18
AB011101_1(AB011101|pid:none) Homo sapiens mRNA for KIAA0529 pro...    93   2e-17
(Q9Y4E8) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 15;...    93   2e-17
AF013990_1(AF013990|pid:none) Homo sapiens ubiquitin C-terminal ...    93   2e-17
BC125123_1(BC125123|pid:none) Homo sapiens ubiquitin specific pe...    93   2e-17
AK122301_1(AK122301|pid:none) Mus musculus mRNA for mKIAA0529 pr...    93   2e-17
(Q8R5H1) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 15;...    93   2e-17
AK168755_1(AK168755|pid:none) Mus musculus 17 days pregnant adul...    93   2e-17
AK161469_1(AK161469|pid:none) Mus musculus adult male testis cDN...    93   2e-17
AJ720146_1(AJ720146|pid:none) Gallus gallus mRNA for hypothetica...    92   3e-17
(Q6J1Y9) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 19;...    80   4e-17
AL049523_5(AL049523|pid:none) Arabidopsis thaliana DNA chromosom...    77   8e-17
BC090333_1(BC090333|pid:none) Rattus norvegicus ubiquitin specif...    79   8e-17
(Q99K46) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 11;...    79   8e-17
AF118222_6(AF118222|pid:none) Arabidopsis thaliana BAC F3H7.           77   8e-17
BC105613_1(BC105613|pid:none) Rattus norvegicus ubiquitin specif...    79   8e-17
AK031767_1(AK031767|pid:none) Mus musculus 11 days embryo head c...    79   8e-17
BC005470_1(BC005470|pid:none) Mus musculus ubiquitin specific pe...    79   8e-17
AK049053_1(AK049053|pid:none) Mus musculus 0 day neonate cerebel...    79   8e-17
BC142727_1(BC142727|pid:none) Homo sapiens ubiquitin specific pe...    80   1e-16
AK294756_1(AK294756|pid:none) Homo sapiens cDNA FLJ54450 complet...    80   1e-16
AB020698_1(AB020698|pid:none) Homo sapiens mRNA for KIAA0891 pro...    80   1e-16
(Q3UJD6) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 19;...    80   1e-16
BC060613_1(BC060613|pid:none) Mus musculus ubiquitin specific pe...    80   1e-16
AK160807_1(AK160807|pid:none) Mus musculus 17 days embryo head c...    80   1e-16
(O94966) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 19;...    80   1e-16
BC082241_1(BC082241|pid:none) Homo sapiens ubiquitin specific pe...    80   1e-16
BC046824_1(BC046824|pid:none) Mus musculus ubiquitin specific pe...    80   1e-16
BC065909_1(BC065909|pid:none) Homo sapiens ubiquitin specific pe...    80   1e-16
AP008218_1389(AP008218|pid:none) Oryza sativa (japonica cultivar...    71   5e-16
BC125668_1(BC125668|pid:none) Xenopus tropicalis hypothetical pr...    77   6e-16
AF105715_1(AF105715|pid:none) Gallus gallus ubiquitous nuclear p...    87   1e-15
(Q5RCD3) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 4; ...    87   1e-15
AF017306_1(AF017306|pid:none) Homo sapiens deubiquitinating enzy...    86   3e-15
T09478(T09478) ubiquitin thiolesterase (EC 3.1.2.15) - human  &U...    86   3e-15
(A6QR55) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 4; ...    86   3e-15
(Q13107) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 4; ...    86   3e-15
AK223292_1(AK223292|pid:none) Homo sapiens mRNA for ubiquitin sp...    86   3e-15
AF350251_1(AF350251|pid:none) Homo sapiens ubiquitin specific pr...    71   5e-15
(Q8NFA0) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 32;...    70   7e-15
(P35125) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 6; ...    70   7e-15
S22158(S57868;S57875;S22156;S22158) transforming protein (clones...    70   7e-15
AF155116_1(AF155116|pid:none) Homo sapiens NY-REN-60 antigen mRN...    70   7e-15
AP003847_10(AP003847|pid:none) Oryza sativa Japonica Group genom...    84   1e-14
(P39538) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 12;...    75   2e-14
BC125131_1(BC125131|pid:none) Homo sapiens ubiquitin specific pe...    83   2e-14
(Q9MAQ3) RecName: Full=Putative ubiquitin carboxyl-terminal hydr...    82   4e-14
AC006424_5(AC006424|pid:none) Arabidopsis thaliana chromosome I ...    82   4e-14
AE016819_860(AE016819|pid:none) Ashbya gossypii (= Eremothecium ...    70   1e-13
CR954201_301(CR954201|pid:none) Ostreococcus tauri strain OTTH05...    78   5e-13
AL844504_164(AL844504|pid:none) Plasmodium falciparum 3D7 chromo...    78   5e-13
(Q9ZSB5) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 10;...    77   1e-12
(Q9USM5) RecName: Full=Probable ubiquitin carboxyl-terminal hydr...    75   6e-12
(O60079) RecName: Full=Probable ubiquitin carboxyl-terminal hydr...    72   4e-11
CR380958_59(CR380958|pid:none) Candida glabrata strain CBS138 ch...    72   5e-11
T20528(T20528) hypothetical protein F07A11.4 - Caenorhabditis el...    71   6e-11
FN392321_618(FN392321|pid:none) Pichia pastoris GS115 chromosome...    71   6e-11
BC156265_1(BC156265|pid:none) Synthetic construct Mus musculus c...    70   1e-10
BC058994_1(BC058994|pid:none) Mus musculus ubiquitin specific pe...    70   1e-10
CR382123_148(CR382123|pid:none) Kluyveromyces lactis strain NRRL...    70   1e-10
CR382139_668(CR382139|pid:none) Debaryomyces hansenii strain CBS...    69   3e-10
CP000496_987(CP000496|pid:none) Pichia stipitis CBS 6054 chromos...    66   3e-09
AY812465_1(AY812465|pid:none) Schistosoma japonicum SJCHGC08139 ...    65   6e-09
CU633900_522(CU633900|pid:none) Podospora anserina genomic DNA c...    65   6e-09
FN318888_1(FN318888|pid:none) Schistosoma japonicum isolate Anhu...    65   6e-09
CR382128_569(CR382128|pid:none) Yarrowia lipolytica strain CLIB1...    64   1e-08
AP007157_155(AP007157|pid:none) Aspergillus oryzae RIB40 genomic...    63   2e-08
AL953864_3(AL953864|pid:none) Zebrafish DNA sequence from clone ...    63   2e-08
BC043910_1(BC043910|pid:none) Xenopus laevis ubiquitin specific ...    62   5e-08
AE017341_729(AE017341|pid:none) Cryptococcus neoformans var. neo...    61   8e-08
AK300590_1(AK300590|pid:none) Homo sapiens cDNA FLJ53203 complet...    58   5e-07
(P40818) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 8; ...    58   5e-07
AB179348_1(AB179348|pid:none) Macaca fascicularis testis cDNA cl...    58   5e-07
AK296480_1(AK296480|pid:none) Homo sapiens cDNA FLJ55333 complet...    58   5e-07
BC122571_1(BC122571|pid:none) Bos taurus ubiquitin specific pept...    58   5e-07
AK091775_1(AK091775|pid:none) Homo sapiens cDNA FLJ34456 fis, cl...    58   5e-07
AC124957_10(AC124957|pid:none) Medicago truncatula clone mth2-15...    57   9e-07
AF057146_1(AF057146|pid:none) Mus musculus putative deubiquitina...    57   2e-06
BC027052_1(BC027052|pid:none) Mus musculus ubiquitin specific pe...    57   2e-06
AK122195_1(AK122195|pid:none) Mus musculus mRNA for mKIAA0055 pr...    57   2e-06
BC092078_1(BC092078|pid:none) Mus musculus ubiquitin specific pe...    57   2e-06
AL732330_1(AL732330|pid:none) Mouse DNA sequence from clone RP23...    57   2e-06
BX537420_1(BX537420|pid:none) Homo sapiens mRNA; cDNA DKFZp686M2...    56   2e-06
CR380953_216(CR380953|pid:none) Candida glabrata strain CBS138 c...    56   2e-06
FM992688_1282(FM992688|pid:none) Candida dubliniensis CD36 chrom...    55   6e-06
AY190953_3(AY190953|pid:none) Drosophila virilis clone DVIF01_19...    54   1e-05
(P32571) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 4; ...    54   1e-05
L08070_1(L08070|pid:none) Saccharomyces cerevisiae vacuole bioge...    54   1e-05
CU928179_275(CU928179|pid:none) Zygosaccharomyces rouxii strain ...    54   1e-05
BC144041_1(BC144041|pid:none) Homo sapiens ubiquitin specific pe...    53   2e-05
AK126752_1(AK126752|pid:none) Homo sapiens cDNA FLJ44799 fis, cl...    53   2e-05
BC136368_1(BC136368|pid:none) Homo sapiens ubiquitin specific pe...    53   2e-05
(Q70CQ4) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 31;...    53   2e-05
AJ586135_1(AJ586135|pid:none) Homo sapiens mRNA for ubiquitin-sp...    53   2e-05
AE016819_240(AE016819|pid:none) Ashbya gossypii (= Eremothecium ...    52   3e-05
CR382132_642(CR382132|pid:none) Yarrowia lipolytica strain CLIB1...    52   3e-05
U50193_5(U50193|pid:none) Caenorhabditis elegans cosmid ZK328, c...    52   3e-05
AF469173_1(AF469173|pid:none) Caenorhabditis elegans ubiquitin c...    52   3e-05
T29010(T29010)hypothetical protein ZK328.1 - Caenorhabditis eleg...    52   3e-05
AE014298_3293(AE014298|pid:none) Drosophila melanogaster chromos...    51   9e-05
AK083271_1(AK083271|pid:none) Mus musculus adult male hippocampu...    51   9e-05
AE014298_3294(AE014298|pid:none) Drosophila melanogaster chromos...    51   9e-05
AE014298_3290(AE014298|pid:none) Drosophila melanogaster chromos...    51   9e-05
FN357441_1(FN357441|pid:none) Schistosoma mansoni genome sequenc...    51   9e-05
BC086963_1(BC086963|pid:none) Danio rerio zgc:92134, mRNA (cDNA ...    50   1e-04
BX908749_1(BX908749|pid:none) Zebrafish DNA sequence from clone ...    50   2e-04
BC167952_1(BC167952|pid:none) Xenopus tropicalis cDNA clone MGC:...    49   3e-04
AF064250_1(AF064250|pid:none) Gallus gallus ubiquitin specific p...    49   4e-04
(Q9QZL6) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 21;...    48   6e-04
AL590714_3(AL590714|pid:none) Human DNA sequence from clone RP11...    48   6e-04
AF217979_1(AF217979|pid:none) Homo sapiens clone PP1490 unknown ...    48   6e-04
AK011148_1(AK011148|pid:none) Mus musculus 10 days embryo whole ...    48   6e-04
AB170626_1(AB170626|pid:none) Macaca fascicularis brain cDNA clo...    48   6e-04
(Q9UK80) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 21;...    48   6e-04
BC090946_1(BC090946|pid:none) Homo sapiens ubiquitin specific pe...    48   6e-04
CP001142_248(CP001142|pid:none) Phaeodactylum tricornutum CCAP 1...    48   6e-04
(B2GUX4) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 21;...    48   6e-04
(O60139) RecName: Full=Probable ubiquitin carboxyl-terminal hydr...    47   0.002
AF079564_1(AF079564|pid:none) Homo sapiens ubiquitin-specific pr...    46   0.002
(O75604) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 2; ...    46   0.002
AY751540_1(AY751540|pid:none) Ubiquitin protease vector pHUsp2-c...    46   0.002
BC041366_1(BC041366|pid:none) Homo sapiens ubiquitin specific pe...    46   0.002
AF106658_1(AF106658|pid:none) Rattus norvegicus deubiquitinating...    46   0.002
AF202453_1(AF202453|pid:none) Rattus norvegicus ubiquitin specif...    46   0.002
AK138799_1(AK138799|pid:none) Mus musculus 0 day neonate thymus ...    46   0.002
DQ895743_1(DQ895743|pid:none) Synthetic construct Homo sapiens c...    46   0.002
AF079565_1(AF079565|pid:none) Mus musculus ubiquitin-specific pr...    46   0.002
AM270233_25(AM270233|pid:none) Aspergillus niger contig An11c016...    45   0.004
AP007155_236(AP007155|pid:none) Aspergillus oryzae RIB40 genomic...    45   0.004
AM920427_1084(AM920427|pid:none) Penicillium chrysogenum Wiscons...    45   0.006
AK057225_1(AK057225|pid:none) Homo sapiens cDNA FLJ32663 fis, cl...    45   0.006
(P39944) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 5; ...    45   0.006
AE014297_3055(AE014297|pid:none) Drosophila melanogaster chromos...    44   0.014
BT058062_1(BT058062|pid:none) Drosophila melanogaster MIP03335 f...    44   0.014
BT056276_1(BT056276|pid:none) Drosophila melanogaster MIP01435 f...    44   0.014
AL590446_91(AL590446|pid:none) chromosome VI of strain GB-M1 of ...    44   0.014
FJ375318_1(FJ375318|pid:none) Oryzias melastigma ubiquitin speci...    43   0.018
AF064248_1(AF064248|pid:none) Gallus gallus ubiquitin specific p...    43   0.018
FM992691_411(FM992691|pid:none) Candida dubliniensis CD36 chromo...    41   0.090
AM494964_139(AM494964|pid:none) Leishmania braziliensis chromoso...    40   0.20
(Q4R6D3) RecName: Full=Putative ubiquitin carboxyl-terminal hydr...    39   0.26
CR926290_1(CR926290|pid:none) Xenopus tropicalis finished cDNA, ...    39   0.26
BC146302_1(BC146302|pid:none) Synthetic construct Mus musculus c...    39   0.34
BC100992_1(BC100992|pid:none) Homo sapiens deubiquitinating enzy...    39   0.34
AY533200_1(AY533200|pid:none) Homo sapiens deubiquitinating enzy...    39   0.34
BC089315_1(BC089315|pid:none) Mus musculus ubiquitin specific pe...    39   0.34
AF544011_1(AF544011|pid:none) Homo sapiens deubiquitinating enzy...    39   0.34
BC100991_1(BC100991|pid:none) Homo sapiens deubiquitinating enzy...    39   0.34
(Q0WX57) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 17;...    39   0.34
BC100993_1(BC100993|pid:none) Homo sapiens deubiquitinating enzy...    39   0.34
BC031366_1(BC031366|pid:none) Mus musculus ubiquitin specific pe...    39   0.34
AK143844_1(AK143844|pid:none) Mus musculus 6 days neonate spleen...    39   0.34
BC148905_1(BC148905|pid:none) Bos taurus ubiquitin specific pept...    39   0.45
AC116956_56(AC116956|pid:none) Dictyostelium discoideum chromoso...    39   0.45
(Q7RTZ2) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 17-...    39   0.45
CR860104_1(CR860104|pid:none) Pongo abelii mRNA; cDNA DKFZp468P1...    39   0.45
(Q8TEY7) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 33;...    39   0.45
BC016663_1(BC016663|pid:none) Homo sapiens ubiquitin specific pe...    39   0.45
AB385425_1(AB385425|pid:none) Synthetic construct DNA, clone: pF...    39   0.45
AM439355_4(AM439355|pid:none) Vitis vinifera contig VV78X136610....    39   0.45
BC005506_1(BC005506|pid:none) Mus musculus ubiquitin specific pe...    39   0.45
AM502245_88(AM502245|pid:none) Leishmania infantum chromosome 27.      39   0.45
AF383174_1(AF383174|pid:none) Mus musculus pVHL-interacting deub...    39   0.45
BC102596_1(BC102596|pid:none) Bos taurus ubiquitin specific pept...    38   0.58
AM494969_316(AM494969|pid:none) Leishmania braziliensis chromoso...    38   0.58
CP001329_394(CP001329|pid:none) Micromonas sp. RCC299 chromosome...    38   0.58
(A6NCW7) RecName: Full=Inactive ubiquitin carboxyl-terminal hydr...    38   0.58
CR382137_138(CR382137|pid:none) Debaryomyces hansenii strain CBS...    38   0.58
(Q6R6M4) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 17-...    38   0.58
(A6NCW0) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 17-...    38   0.58
EU975665_1(EU975665|pid:none) Zea mays clone 496098 unknown mRNA.      38   0.76
AK301527_1(AK301527|pid:none) Homo sapiens cDNA FLJ55451 partial...    37   0.99
AY336567_1(AY336567|pid:none) Mus musculus cell-type embryonic s...    37   0.99
BC066557_1(BC066557|pid:none) Danio rerio ubiquitin specific pep...    37   0.99
BC132862_1(BC132862|pid:none) Homo sapiens ubiquitin specific pe...    37   0.99
BX649634_3(BX649634|pid:none) Zebrafish DNA sequence from clone ...    37   0.99
AM502250_343(AM502250|pid:none) Leishmania infantum chromosome 32.     37   0.99
AX882263_1(AX882263|pid:none) Sequence 17168 from Patent EP10746...    37   0.99
AY618868_1(AY618868|pid:none) Homo sapiens ubiquitin specific pr...    37   0.99
AX107851_1(AX107851|pid:none) Sequence 2 from Patent WO0123589.        37   0.99
(Q9H9J4) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 42;...    37   0.99
(Q9FPT5) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 1; ...    37   0.99
BT076091_1(BT076091|pid:none) Caligus rogercresseyi clone crog-e...    37   0.99
EF583932_1(EF583932|pid:none) Sus scrofa ubiquitin specific pept...    37   1.3
BC125749_1(BC125749|pid:none) Xenopus tropicalis ubiquitin speci...    36   2.2
(Q9Y2K6) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 20;...    36   2.2
CR380953_103(CR380953|pid:none) Candida glabrata strain CBS138 c...    36   2.2
AB385416_1(AB385416|pid:none) Synthetic construct DNA, clone: pF...    36   2.2
BC039593_1(BC039593|pid:none) Homo sapiens ubiquitin specific pe...    36   2.2
FN357331_38(FN357331|pid:none) Schistosoma mansoni genome sequen...    36   2.9
(Q70EL2) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 45;...    36   2.9
BC150648_1(BC150648|pid:none) Homo sapiens ubiquitin specific pe...    36   2.9
AL832030_1(AL832030|pid:none) Homo sapiens mRNA; cDNA DKFZp451O0...    36   2.9
CR628338_7(CR628338|pid:none) Legionella pneumophila str. Paris ...    36   2.9
BC156218_1(BC156218|pid:none) Synthetic construct Homo sapiens c...    36   2.9
AY145028_1(AY145028|pid:none) Saccharomyces kluyveri clone Conti...    36   2.9
AJ583819_1(AJ583819|pid:none) Homo sapiens mRNA for ubiquitin sp...    36   2.9
BX927184_4(BX927184|pid:none) Zebrafish DNA sequence from clone ...    35   3.8
BC075532_1(BC075532|pid:none) Xenopus tropicalis ubiquitin speci...    35   3.8
BC084261_1(BC084261|pid:none) Xenopus laevis ubiquitin specific ...    35   3.8
(Q0VA64) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 16;...    35   3.8
AB173443_1(AB173443|pid:none) Macaca fascicularis brain cDNA clo...    35   4.9
(Q8K387) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 45;...    35   6.4
AK088073_1(AK088073|pid:none) Mus musculus 2 days neonate thymus...    35   6.4
AY058707_1(AY058707|pid:none) Drosophila melanogaster LD43147 fu...    35   6.4
(Q6PAW2) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 16;...    35   6.4
(Q9VVR1) RecName: Full=Ubiquitin carboxyl-terminal hydrolase non...    35   6.4
AL772187_5(AL772187|pid:none) Mouse DNA sequence from clone RP23...    35   6.4
CP000447_2049(CP000447|pid:none) Shewanella frigidimarina NCIMB ...    35   6.4
BC057482_1(BC057482|pid:none) Danio rerio ubiquitin specific pep...    34   8.4
AB384215_1(AB384215|pid:none) Synthetic construct DNA, clone: pF...    34   8.4
BC071582_1(BC071582|pid:none) Homo sapiens ubiquitin specific pe...    34   8.4
AX107033_1(AX107033|pid:none) Sequence 2 from Patent WO0123585.        34   8.4
BC027992_1(BC027992|pid:none) Homo sapiens ubiquitin specific pe...    34   8.4
AB040886_1(AB040886|pid:none) Homo sapiens mRNA for KIAA1453 pro...    34   8.4
AK022913_1(AK022913|pid:none) Homo sapiens cDNA FLJ12851 fis, cl...    34   8.4
AL840632_1(AL840632|pid:none) Mouse DNA sequence from clone RP23...    34   8.4
(Q70EL3) RecName: Full=Inactive ubiquitin carboxyl-terminal hydr...    34   8.4
BC047168_1(BC047168|pid:none) Danio rerio ubiquitin specific pep...    34   8.4
AK173083_1(AK173083|pid:none) Mus musculus mRNA for mKIAA1003 pr...    34   8.4
AK001671_1(AK001671|pid:none) Homo sapiens cDNA FLJ10809 fis, cl...    34   8.4
(Q6P8X6) RecName: Full=Putative ubiquitin carboxyl-terminal hydr...    34   8.4
AK007018_1(AK007018|pid:none) Mus musculus adult male testis cDN...    34   8.4
AF449715_1(AF449715|pid:none) Mus musculus pVHL-interacting deub...    34   8.4

>FB914696_1(FB914696|pid:none) Sequence 133969 from Patent
           WO2008034648.  &FB920693_1(FB920693|pid:none)
           &FB925775_1(FB925775|pid:none)
          Length = 640

 Score = 80.5 bits (197), Expect(2) = 2e-21
 Identities = 35/63 (55%), Positives = 47/63 (74%)
 Frame = +3

Query: 477 ANEQWDNHIKRNQSIIVNLFQGQYKSTLVCAKCSKVSITFDPYMFVTLPIPVPTERLFDV 656
           A E W+ H  RN SIIV+ FQGQYKSTLVC  C+K+S+TFDP+M+++LP+P    R+  V
Sbjct: 146 AEECWNYHKARNDSIIVDKFQGQYKSTLVCPVCNKISVTFDPFMYLSLPLPSTVTRMITV 205

Query: 657 LLF 665
            +F
Sbjct: 206 TVF 208

 Score = 46.6 bits (109), Expect(2) = 2e-21
 Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
 Frame = +1

Query: 745 PIKYCLKLPKREDVETLRVELSKIVGIESS-CIALAETFKNRIYTFL-NDQKNLISIKDK 918
           P+ Y + + K  +   L   L+ +  +++S  + LAE ++ RIY +L N  + L  IKD+
Sbjct: 216 PMPYTVTVQKNGNCRDLTKALADVCCLKNSETLLLAEVYERRIYRYLTNPIEGLHIIKDE 275

Query: 919 DVTIAYELPHAGDDISRIHVMHRK 990
           D+ +AY LP   + + R+ ++H +
Sbjct: 276 DILVAYRLPVGHEKLLRLEILHSR 299

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,439,882,143
Number of extensions: 25894102
Number of successful extensions: 52361
Number of sequences better than 10.0: 247
Number of HSP's gapped: 52353
Number of HSP's successfully gapped: 299
Length of query: 378
Length of database: 1,051,180,864
Length adjustment: 130
Effective length of query: 248
Effective length of database: 630,428,194
Effective search space: 156346192112
Effective search space used: 156346192112
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.58  gvh: 0.45  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U11589-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 2
CF (FL, S) 1
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0