Contig-U11582-1
Contig ID Contig-U11582-1
Contig update 2002.12.18
Contig sequence
>Contig-U11582-1 (Contig-U11582-1Q) /CSM_Contig/Contig-U11582-1Q.Seq.d
AAATAAAAAGCTGATTTATTTAAAATTATTTATTATTTGTTTAAAATAAT
ATAAATATATACATACTCACCAACAAATTAAATATATTAAAATAAAATAT
TTTAAATAAAAATTAAAAAAATTATACCCTTTTCATAAAATTAAAAAAAT
AACAATAAAAAAAAAAAAAAAAAAACCTTTAAAAAGATAAAAAAAAAAAA
ATTAAAAATNAAAAAAAAA----------AAAAAAAAGAAAAGATGGTAT
CCAATCTATTAAAAGGATTAATCCTTTTTAGCTTATTTATATCTTTTTTA
AATGGTGATGATAAAATATTCCCAGTTACAATTAGGGATTTATCACCAAT
GACAAATCCAGTATTTTGAAATTAAAAATAATAATACATTAGTTAAAGGA
ATTGTAAAATCTAAACTTAATCATAGTGATAGATCACCAGTCTATTGTTG
TGGTGATAATCATGCTCCATCAAATGATGCATATAATTTCGTAGTTCATA
ATCAAAGTACATTTCATAGCTGGTTTCATGATGTTCCAGGTGTAAATGTA
CCAGTATTAAGTAAATTAGTATTTAAACAAAACCAAACTGATCCAAGAGT
ATTCTATTATGAAACTCCATCATTCTTTCCAATTGATGATTTAGGTTTTA
AAGATCCAAATTATAAAGGTAAAAAAATTAATGAACCAAATTATATGTCA
AAAGATAAATTTGCCCATAATTACCATTTTTGTTTAGAAATGCATGCTTC
TTTCTTTTATATTGGTGGTGAAGAATTTAATTTTAAAGGTGATGATGATG
TTTGGGTATTTATTAATGGATGATTTAGTAATTGATTTGGGTGCACCACA
TACAGCAGAATCAGCAAGTGTTGATCTTGATAAACTTGGTTTAATAAAAG
GTAAAAGTTATAATTTTGATTTCTTTTATTGTGAAAGACATACAACTGAA
TCTTATATTCATATTTCAACAAGTATTGATTTAGAATGCAAATGGAAAGA
TTATTGTGGAGTTTGTGAAGGTACTGGAAAATGTTGTGATGTTTCACAAT
GTACTGGAAGTTTATCACCATGTGGTAGTTGGGAATGTCCACCACCAAAT
ATTGGTACAAAAGAATGGAAATATAATTGTATTATGAAAGAACCAAATTG
TACATTATTGGATACAATGTGTACAAGTTATGAATGTAATGCAATTTCAA
AAACTTGTGAACCAAGAGAGAATGTTGATCCATGTGCATATACTAATAGT
TGTGAAAAGAAAGTTTGTAGTGAAGAATTGGGAGGTTGTTATGAAGTTGA
AAAAAAAATGTTACTCTGAGGCATTCTCTGATCCAACATGTTATGAACTT
CCATGTGTAAATGGTACTTGCACAGTTAATAGGTTATGTGATATACCAGA
TAAATGTATAATTAGTACTTGTATCGAAGGTAATGGTTGTTCACATTTAA
AGAAACAATGCTCAGATAAGGATTATTGTACAATTGATAGTTGTTCAAGT
ATCACTGGTGAATGCTTTTTCGATAGGGTAAAAGACTGTCAACCATGTAA
TGAAACACTCTGTGCCACTGATGAAAGTAATCTTTGTGTGCGTACAGAGT
GTAATCCTTATGATAATTCCACATGTAATGAAATTAAATTGGTGGATTGT
GATGATGGCAATCTCTGTACCAATGATATTTGTGATCCAGCCACTGGAAA
ATGTTCAAACTTACCAGTGGTTTGTGAGATTAAAGATGCTTGTAACAAAA
CCACAATGTGATATGGTCACTGGTAAATGCATTGTCACCGATAATTGTAA
TGACAATAACATATGCAGTGACGATAGGTTGCTCATTGGATGGCACATGT
ATTCACACTAAAAAGACATTGTGATGATGGAAATAAATGTACAAATGATT
TTTGTAAAGTTGATATTGGCTGCGTTCATAGTAATATCACTTGTGAATCA
AGTTCAGTTTGTATGGTTGCAAGTTGTGATTCGAATAAAGGTTGTATTGA
ATCACCAATAGTCTGTCCATCAAGTGCATTTTGTTTAGTGGCTCAATGTG
ATGTAGGTTATGGTGGTTGTAATCAATATGATAAAGTTTGTATACCTGAT
GATCCTCATTGTCAATATGGTATTTGTGATAACTCAACTAAAAAATGTAC
ATTTAAAGATTTCGATCCACTTCCATTCAGATGTCAATCTGTGGCTGTAA
AAGCAGGTGTTATTGGTGGTGCTGCAATTGCTGGTGTAGTTGTTGGTGGT
GCCGTTGCACTTGGTTTAGCTTTATTTGGTGCTAAAGCTGGTTATAATCA
TTGGATGTCTTTGAAAAATAATCAGATGGCAACCTCATCTGTAAATCCAT
TATATGAACCATCACCACATCAAGGTACAAATCCCCTTTGGGAAGCTCCT
CCAACATAAAAAAAAAAAAATAATAATAATAATAATAAAGTGTTGGAAAT
ACAATCAATCGATTACTTATGATTTATTTTTGAATACAATTAAAACAATA
GTAATAATAATAATAATAATAATAATAAAAAAATAAAAAAAAATAAATAA
AAAACTGAAATTTTAGAGATATTAAATATGATATTTTAAAAATAAAAATA
AAAAAAACAATAATAATAATAATAATAAAAAAGGAAAATAAATAATAGTT
TTTATTGAAAAAAAAAAAAAAAAA

Gap gap included
Contig length 2664
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 3905816
End point 3903151
Strand (PLUS/MINUS) MINUS
Number of clones 47
Number of EST 64
Link to clone list U11582
List of clone(s)

est1=CHM422F,1,165
est2=SHG377F,8,166
est3=CHP307F,11,218
est4=CHP202F,14,218
est5=CFG268F,21,212
est6=CHJ293F,22,197
est7=CHN716F,22,197
est8=CHO622F,23,136
est9=CHE601F,28,197
est10=CHO544F,32,211
est11=SHE681F,33,166
est12=CHH607F,34,195
est13=CHG536F,35,197
est14=CHG601F,35,195
est15=CHI558F,35,197
est16=SHF720F,39,191
est17=CHE891F,41,165
est18=CHF319F,42,165
est19=CHH411F,43,197
est20=CHR428F,43,165
est21=CHO731F,44,165
est22=CHH773F,48,197
est23=CHF711F,51,165
est24=CHF794F,51,165
est25=CHH879F,53,197
est26=SHF454F,53,191
est27=CHG243F,57,165
est28=CHO162F,57,197
est29=CHI304F,220,818
est30=CHP544F,259,753
est31=SFL202F,386,819
est32=CFG268Z,578,1088
est33=CHA728F,722,1350
est34=CFJ814F,1169,1707
est35=CFH274Z,1604,2394
est36=CHG601Z,1620,2174
est37=CHH879Z,1635,2076
est38=SHB214Z,1659,1902
est39=CFH486Z,1670,2290
est40=SFE881Z,1675,2275
est41=CFJ814Z,1687,2385
est42=CHP202Z,1689,2143
est43=CHH575Z,1740,2184
est44=CFH643Z,1742,2394
est45=CHA328Z,1759,2389
est46=CHH444Z,1847,2390
est47=CHQ195Z,1869,2418
est48=CHO731Z,1930,2267
est49=CHF794Z,1931,2306
est50=CHE891Z,1932,2295
est51=SHF454Z,1971,2309
est52=SHE681Z,1996,2269
est53=CHN716Z,1998,2207
est54=CHO482Z,1999,2431
est55=CHI304Z,2003,2485
est56=SFL202Z,2003,2299
est57=CHL136Z,2037,2336
est58=CHG243Z,2039,2269
est59=CHG536Z,2039,2288
est60=CHF711Z,2041,2306
est61=CHK686Z,2122,2404
est62=CHP544Z,2219,2547
est63=CHL305Z,2326,2457
est64=SSA834F,2358,2665
Translated Amino Acid sequence
k*kadlfkiiyylfkii*iytysptn*iy*nkif*ikikkiipfs*n*KNNNKKKKKKTF
KKIKKKKLKXKKK---

---KKEKMVSNLLKGLILFSLFISFLNGDDKIFPVTIRDLSPMTNPVF*n*k**yis*rn
cki*t*s***itslllw**scsik*ci*frss*skyis*lvs*csrckctsik*isi*tk
pn*sksill*nsiilsn**frf*rskl*r*kn**tklyvkr*icp*lpflfrnacfflly
ww*ri*f*r***clgiy*wmi**liwvhhiqqnqqvlilinlv**kvkviilisfivkdi
qlnlififqqvli*nangkiivefvkvlenvvmfhnvlevyhhvvvgnvhhqilvqkngn
iivl*knqivhywiqcvqvmnvmqfqklvnqermlihvhilivvkrkfvvknwevvmklk
kkcyseafsdptcyelpcvngtctvnrlcdipdkciistciegngcshlkkqcsdkdyct
idscssitgecffdrvkdcqpcnetlcatdesnlcvrtecnpydnstcneiklvdcddgn
lctndicdpatgkcsnlpvvceikdacnkttm*yghw*mhchr*l**q*hmq*r*vahwm
ahvftlkrhcddgnkctndfckvdigcvhsnitcesssvcmvascdsnkgciespivcps
safclvaqcdvgyggcnqydkvcipddphcqygicdnstkkctfkdfdplpfrcqsvavk
agviggaaiagvvvggavalglalfgakagynhwmslknnqmatssvnplyepsphqgtn
plweappt*kkknnnnnnkvleiqsidyl*fifeyn*nnsnnnnnnnnkkikknk*ktei
leilnmif*k*k*kkq******krkinnsfy*kkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
k*kadlfkiiyylfkii*iytysptn*iy*nkif*ikikkiipfs*n*KNNNKKKKKKTF
KKIKKKKLKXKKK---

---kkkkrwypiy*kd*sflaylylf*mvmikysqlqlgiyhq*qiqyfeiknnntlvkg
ivksklnhsdrspvyccgdnhapsndaynfvvhnqstfhswfhdvpgvnvpvlsklvfkq
nqtdprvfyyetpsffpiddlgfkdpnykgkkinepnymskdkfahnyhfclemhasffy
iggeefnfkgdddvwvfing*fsn*fgcttysriskc*s**twfnkr*kl*f*flll*kt
yn*ilysyfnky*frmqmerllwsl*rywkml*cftmywkfitmw*lgmsttkywykrme
i*lyyertklyiigynvykl*m*cnfknl*tkrec*smciy**l*kesl**rigrll*s*
kknvtlrhsliqhvmnfhv*mvlaqligyviyqinv*lvlvskvmvvhi*rnnaqiriiv
qlivvqvslvnafsig*ktvnhvmkhsvplmkvifvcvqsvilmiiphvmklnwwivmma
isvpmifviqplenvqtyqwfvrlkmlvtkpqcdmvtgkcivtdncndnnicsddrllig
whmysh*kdivmmeinvqmifvklilaafivislvnqvqfvwlqvvirikvvlnhq*svh
qvhfv*wlnvm*vmvvvinmikfvylmilivnmvfvitqlknvhlkisihfhsdvnlwl*
kqvllvvlqllv*llvvplhlv*lylvlklviiigcl*kiirwqphl*ihymnhhhikvq
ipfgkllqhkkkkiiiiiikcwkynqsitydlflntiktiviiiiiiiikk*kkinkklk
f*ry*i*yfknknkknnnnnnnkkgk*iivfiekkkkk

Frame B:
nkkliylklfiiclk*ykyihthqqikyikikyfk*klkklypfhkikkitikkkkkkpl
kr*kkkn*kxkk---

---kkrkdgiqsikrinpf*liyiffkw***nipsyn*gfitndkssilklkiiih*lke
l*nlnliividhqsivvviimlhqmmhiis*fiikvhfiagfmmfqv*myqy*vn*ylnk
tkliqeysimklhhsfqlmi*vlkiqiikvkklmnqiicqkinlpiitifv*kcmllsfi
lvvknlilkvmmmfgyllmddlvidlgaphtaesasvdldklglikgksynfdffycerh
ttesyihistsidleckwkdycgvcegtgkccdvsqctgslspcgswecpppnigtkewk
yncimkepnctlldtmctsyecnaisktceprenvdpcaytnscekkvcseelggcyeve
kkmll*gil*snml*tsmckwylhs**vm*ytr*myn*ylyrr*wlftfketmlr*glly
n**lfkyhw*mlfr*gkrlstm**ntlch**k*slcayrv*sl**fhm**n*iggl**wq
slyq*yl*sshwkmfkltsgl*d*rcl*qnhnviwslvnalspiivmtityavtigcsld
gtcihtkktl**wk*myk*fl*s*ywlrs**yhl*ikfslygckl*fe*rly*itnslsi
kcilfsgsm*crlwwl*si**slyt**sslsiwyl**ln*kmyi*rfrstsiqmsicgck
srcywwccncwcscwwcrctwfsfiwc*swl*sldvfek*sdgnlicksii*tittsryk
splgsssnikkkk******svgntinrllmiyf*iqlkq**********knkkk*ikn*n
frdikydilkikikktiiiiiikkenk**fllkkkkk

Frame C:
iks*fi*nyllfv*nniniyiltnklnilk*nilnkn*knytlfiklkk*q*kkkkknl*
kdkkkkiknxkk---

---KKEKMVSNLLKGLILFSLFISFLNGDDKIFPVTIRDLSPMTNPVF*n*k**yis*rn
cki*t*s***itslllw**scsik*ci*frss*skyis*lvs*csrckctsik*isi*tk
pn*sksill*nsiilsn**frf*rskl*r*kn**tklyvkr*icp*lpflfrnacfflly
ww*ri*f*r***clgiy*wmi**liwvhhiqqnqqvlilinlv**kvkviilisfivkdi
qlnlififqqvli*nangkiivefvkvlenvvmfhnvlevyhhvvvgnvhhqilvqkngn
iivl*knqivhywiqcvqvmnvmqfqklvnqermlihvhilivvkrkfvvknwevvmklk
kkcyseafsdptcyelpcvngtctvnrlcdipdkciistciegngcshlkkqcsdkdyct
idscssitgecffdrvkdcqpcnetlcatdesnlcvrtecnpydnstcneiklvdcddgn
lctndicdpatgkcsnlpvvceikdacnkttm*yghw*mhchr*l**q*hmq*r*vahwm
ahvftlkrhcddgnkctndfckvdigcvhsnitcesssvcmvascdsnkgciespivcps
safclvaqcdvgyggcnqydkvcipddphcqygicdnstkkctfkdfdplpfrcqsvavk
agviggaaiagvvvggavalglalfgakagynhwmslknnqmatssvnplyepsphqgtn
plweappt*kkknnnnnnkvleiqsidyl*fifeyn*nnsnnnnnnnnkkikknk*ktei
leilnmif*k*k*kkq******krkinnsfy*kkkkk

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U11582-1 (Contig-U11582-1Q)
/CSM_Contig/Contig-U11582-1Q.Seq.d
(2674 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U11582-1 (Contig-U11582-1Q) /CSM_Contig/Conti... 4207 0.0
Contig-U10692-1 (Contig-U10692-1Q) /CSM_Contig/Conti... 78 6e-14
Contig-U14636-1 (Contig-U14636-1Q) /CSM_Contig/Conti... 66 2e-10
Contig-U13974-1 (Contig-U13974-1Q) /CSM_Contig/Conti... 66 2e-10
Contig-U14682-1 (Contig-U14682-1Q) /CSM_Contig/Conti... 60 1e-08
Contig-U13238-1 (Contig-U13238-1Q) /CSM_Contig/Conti... 60 1e-08
Contig-U13473-1 (Contig-U13473-1Q) /CSM_Contig/Conti... 56 2e-07
Contig-U12894-1 (Contig-U12894-1Q) /CSM_Contig/Conti... 54 8e-07
Contig-U00689-1 (Contig-U00689-1Q) /CSM_Contig/Conti... 54 8e-07
Contig-U11926-1 (Contig-U11926-1Q) /CSM_Contig/Conti... 46 2e-04

>Contig-U11582-1 (Contig-U11582-1Q) /CSM_Contig/Contig-U11582-1Q.Seq.d
Length = 2674

Score = 4207 bits (2122), Expect = 0.0
Identities = 2154/2170 (99%)
Strand = Plus / Plus


Query: 238 gaaaagatggtatccaatctattaaaaggattaatcctttttagcttatttatatctttt 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 gaaaagatggtatccaatctattaaaaggattaatcctttttagcttatttatatctttt 297


Query: 298 ttaaatggtgatgataaaatattcccagttacaattagggatttatcaccaatgacaaat 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ttaaatggtgatgataaaatattcccagttacaattagggatttatcaccaatgacaaat 357


Query: 358 ccagtattttgaaattaaaaataataatacattagttaaaggaattgtaaaatctaaact 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ccagtattttgaaattaaaaataataatacattagttaaaggaattgtaaaatctaaact 417


Query: 418 taatcatagtgatagatcaccagtctattgttgtggtgataatcatgctccatcaaatga 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 taatcatagtgatagatcaccagtctattgttgtggtgataatcatgctccatcaaatga 477


Query: 478 tgcatataatttcgtagttcataatcaaagtacatttcatagctggtttcatgatgttcc 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tgcatataatttcgtagttcataatcaaagtacatttcatagctggtttcatgatgttcc 537


Query: 538 aggtgtaaatgtaccagtattaagtaaattagtatttaaacaaaaccaaactgatccaag 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 aggtgtaaatgtaccagtattaagtaaattagtatttaaacaaaaccaaactgatccaag 597


Query: 598 agtattctattatgaaactccatcattctttccaattgatgatttaggttttaaagatcc 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 agtattctattatgaaactccatcattctttccaattgatgatttaggttttaaagatcc 657


Query: 658 aaattataaaggtnnnnnnnttaatgaaccaaattatatgtcaaaagataaatttgccca 717
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 aaattataaaggtaaaaaaattaatgaaccaaattatatgtcaaaagataaatttgccca 717


Query: 718 taattaccatttttgtttagaaatgcatgcttctttcttttatattggtggtgaagaatt 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 taattaccatttttgtttagaaatgcatgcttctttcttttatattggtggtgaagaatt 777


Query: 778 taattttaaaggtgatgatgatgtttgggtatttattaatggatgatttagtaattgatt 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 taattttaaaggtgatgatgatgtttgggtatttattaatggatgatttagtaattgatt 837


Query: 838 tgggtgcaccacatacagcagaatcagcaagtgttgatcttgataaacttggtttaataa 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 tgggtgcaccacatacagcagaatcagcaagtgttgatcttgataaacttggtttaataa 897


Query: 898 aaggtaaaagttataattttgatttcttttattgtgaaagacatacaactgaatcttata 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 aaggtaaaagttataattttgatttcttttattgtgaaagacatacaactgaatcttata 957


Query: 958 ttcatatttcaacaagtattgatttagaatgcaaatggaaagattattgtggagtttgtg 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 958 ttcatatttcaacaagtattgatttagaatgcaaatggaaagattattgtggagtttgtg 1017


Query: 1018 aaggtactggaaaatgttgtgatgtttcacaatgtactggaagtttatcaccatgtggta 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1018 aaggtactggaaaatgttgtgatgtttcacaatgtactggaagtttatcaccatgtggta 1077


Query: 1078 gttgggaatgtccaccaccaaatattggtacaaaagaatggaaatataattgtattatga 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1078 gttgggaatgtccaccaccaaatattggtacaaaagaatggaaatataattgtattatga 1137


Query: 1138 aagaaccaaattgtacattattggatacaatgtgtacaagttatgaatgtaatgcaattt 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1138 aagaaccaaattgtacattattggatacaatgtgtacaagttatgaatgtaatgcaattt 1197


Query: 1198 caaaaacttgtgaaccaagagagaatgttgatccatgtgcatatactaatagttgtgaaa 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1198 caaaaacttgtgaaccaagagagaatgttgatccatgtgcatatactaatagttgtgaaa 1257


Query: 1258 agaaagtttgtagtgaagaattgggaggttgttatgaagttgnnnnnnnnntgttactct 1317
|||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1258 agaaagtttgtagtgaagaattgggaggttgttatgaagttgaaaaaaaaatgttactct 1317


Query: 1318 gaggcattctctgatccaacatgttatgaacttccatgtgtaaatggtacttgcacagtt 1377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1318 gaggcattctctgatccaacatgttatgaacttccatgtgtaaatggtacttgcacagtt 1377


Query: 1378 aataggttatgtgatataccagataaatgtataattagtacttgtatcgaaggtaatggt 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1378 aataggttatgtgatataccagataaatgtataattagtacttgtatcgaaggtaatggt 1437


Query: 1438 tgttcacatttaaagaaacaatgctcagataaggattattgtacaattgatagttgttca 1497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1438 tgttcacatttaaagaaacaatgctcagataaggattattgtacaattgatagttgttca 1497


Query: 1498 agtatcactggtgaatgctttttcgatagggtaaaagactgtcaaccatgtaatgaaaca 1557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1498 agtatcactggtgaatgctttttcgatagggtaaaagactgtcaaccatgtaatgaaaca 1557


Query: 1558 ctctgtgccactgatgaaagtaatctttgtgtgcgtacagagtgtaatccttatgataat 1617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1558 ctctgtgccactgatgaaagtaatctttgtgtgcgtacagagtgtaatccttatgataat 1617


Query: 1618 tccacatgtaatgaaattaaattggtggattgtgatgatggcaatctctgtaccaatgat 1677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1618 tccacatgtaatgaaattaaattggtggattgtgatgatggcaatctctgtaccaatgat 1677


Query: 1678 atttgtgatccagccactggaaaatgttcaaacttaccagtggtttgtgagattaaagat 1737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1678 atttgtgatccagccactggaaaatgttcaaacttaccagtggtttgtgagattaaagat 1737


Query: 1738 gcttgtaacaaaaccacaatgtgatatggtcactggtaaatgcattgtcaccgataattg 1797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1738 gcttgtaacaaaaccacaatgtgatatggtcactggtaaatgcattgtcaccgataattg 1797


Query: 1798 taatgacaataacatatgcagtgacgataggttgctcattggatggcacatgtattcaca 1857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1798 taatgacaataacatatgcagtgacgataggttgctcattggatggcacatgtattcaca 1857


Query: 1858 ctaaaaagacattgtgatgatggaaataaatgtacaaatgatttttgtaaagttgatatt 1917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1858 ctaaaaagacattgtgatgatggaaataaatgtacaaatgatttttgtaaagttgatatt 1917


Query: 1918 ggctgcgttcatagtaatatcacttgtgaatcaagttcagtttgtatggttgcaagttgt 1977
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1918 ggctgcgttcatagtaatatcacttgtgaatcaagttcagtttgtatggttgcaagttgt 1977


Query: 1978 gattcgaataaaggttgtattgaatcaccaatagtctgtccatcaagtgcattttgttta 2037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1978 gattcgaataaaggttgtattgaatcaccaatagtctgtccatcaagtgcattttgttta 2037


Query: 2038 gtggctcaatgtgatgtaggttatggtggttgtaatcaatatgataaagtttgtatacct 2097
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2038 gtggctcaatgtgatgtaggttatggtggttgtaatcaatatgataaagtttgtatacct 2097


Query: 2098 gatgatcctcattgtcaatatggtatttgtgataactcaactaaaaaatgtacatttaaa 2157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2098 gatgatcctcattgtcaatatggtatttgtgataactcaactaaaaaatgtacatttaaa 2157


Query: 2158 gatttcgatccacttccattcagatgtcaatctgtggctgtaaaagcaggtgttattggt 2217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2158 gatttcgatccacttccattcagatgtcaatctgtggctgtaaaagcaggtgttattggt 2217


Query: 2218 ggtgctgcaattgctggtgtagttgttggtggtgccgttgcacttggtttagctttattt 2277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2218 ggtgctgcaattgctggtgtagttgttggtggtgccgttgcacttggtttagctttattt 2277


Query: 2278 ggtgctaaagctggttataatcattggatgtctttgaaaaataatcagatggcaacctca 2337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2278 ggtgctaaagctggttataatcattggatgtctttgaaaaataatcagatggcaacctca 2337


Query: 2338 tctgtaaatccattatatgaaccatcaccacatcaaggtacaaatcccctttgggaagct 2397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2338 tctgtaaatccattatatgaaccatcaccacatcaaggtacaaatcccctttgggaagct 2397


Query: 2398 cctccaacat 2407
||||||||||
Sbjct: 2398 cctccaacat 2407


Score = 125 bits (63), Expect = 3e-28
Identities = 63/63 (100%)
Strand = Plus / Plus


Query: 2439 agtgttggaaatacaatcaatcgattacttatgatttatttttgaatacaattaaaacaa 2498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2439 agtgttggaaatacaatcaatcgattacttatgatttatttttgaatacaattaaaacaa 2498


Query: 2499 tag 2501
|||
Sbjct: 2499 tag 2501


Score = 63.9 bits (32), Expect = 8e-10
Identities = 32/32 (100%)
Strand = Plus / Plus


Query: 2555 ctgaaattttagagatattaaatatgatattt 2586
||||||||||||||||||||||||||||||||
Sbjct: 2555 ctgaaattttagagatattaaatatgatattt 2586


Score = 36.2 bits (18), Expect = 0.19
Identities = 18/18 (100%)
Strand = Plus / Minus


Query: 261 aaaaggattaatcctttt 278
||||||||||||||||||
Sbjct: 278 aaaaggattaatcctttt 261


>Contig-U10692-1 (Contig-U10692-1Q) /CSM_Contig/Contig-U10692-1Q.Seq.d
Length = 1964

Score = 77.8 bits (39), Expect = 6e-14
Identities = 39/39 (100%)
Strand = Plus / Plus


Query: 908 ttataattttgatttcttttattgtgaaagacatacaac 946
|||||||||||||||||||||||||||||||||||||||
Sbjct: 756 ttataattttgatttcttttattgtgaaagacatacaac 794


Score = 42.1 bits (21), Expect = 0.003
Identities = 33/37 (89%)
Strand = Plus / Plus


Query: 1869 ttgtgatgatggaaataaatgtacaaatgatttttgt 1905
|||||||||||| ||| |||||||| ||||||||||
Sbjct: 1353 ttgtgatgatggtaatgaatgtacatttgatttttgt 1389


Score = 42.1 bits (21), Expect = 0.003
Identities = 33/37 (89%)
Strand = Plus / Plus


Query: 1869 ttgtgatgatggaaataaatgtacaaatgatttttgt 1905
|||||||||||| ||| |||||||| ||||||||||
Sbjct: 903 ttgtgatgatggtaatgaatgtacatttgatttttgt 939


Score = 34.2 bits (17), Expect = 0.75
Identities = 20/21 (95%)
Strand = Plus / Plus


Query: 716 cataattaccatttttgttta 736
|||||||| ||||||||||||
Sbjct: 550 cataattatcatttttgttta 570


Score = 32.2 bits (16), Expect = 3.0
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 788 ggtgatgatgatgttt 803
||||||||||||||||
Sbjct: 634 ggtgatgatgatgttt 649


Score = 32.2 bits (16), Expect = 3.0
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 622 attctttccaattgat 637
||||||||||||||||
Sbjct: 462 attctttccaattgat 477


>Contig-U14636-1 (Contig-U14636-1Q) /CSM_Contig/Contig-U14636-1Q.Seq.d
Length = 639

Score = 65.9 bits (33), Expect = 2e-10
Identities = 42/45 (93%)
Strand = Plus / Plus


Query: 915 tttgatttcttttattgtgaaagacatacaactgaatcttatatt 959
||||||||||||||||||||| | ||||||||||||||| |||||
Sbjct: 548 tttgatttcttttattgtgaacgccatacaactgaatctcatatt 592


Score = 60.0 bits (30), Expect = 1e-08
Identities = 33/34 (97%)
Strand = Plus / Plus


Query: 780 attttaaaggtgatgatgatgtttgggtatttat 813
||||||| ||||||||||||||||||||||||||
Sbjct: 414 attttaatggtgatgatgatgtttgggtatttat 447


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 33,789
Number of Sequences: 6905
Number of extensions: 33789
Number of successful extensions: 4165
Number of sequences better than 10.0: 184
length of query: 2674
length of database: 5,674,871
effective HSP length: 17
effective length of query: 2657
effective length of database: 5,557,486
effective search space: 14766240302
effective search space used: 14766240302
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)
dna update 2008.11.25
Homology vs DNA
Query= Contig-U11582-1 (Contig-U11582-1Q) /CSM_Contig/Contig-U11582-1Q.Seq.d
(2674 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ375829) Dictyostelium discoideum cDNA clone:ddc20l04, 3' ... 965 0.0 3
(BJ373109) Dictyostelium discoideum cDNA clone:ddc15c20, 3' ... 965 0.0 5
(BJ362752) Dictyostelium discoideum cDNA clone:ddc23h07, 5' ... 954 0.0 3
(BJ374792) Dictyostelium discoideum cDNA clone:ddc16e12, 3' ... 878 0.0 6
(BJ377032) Dictyostelium discoideum cDNA clone:ddc22h07, 3' ... 872 0.0 5
(BJ373140) Dictyostelium discoideum cDNA clone:ddc15l22, 3' ... 862 0.0 4
(BJ398045) Dictyostelium discoideum cDNA clone:dds10b22, 3' ... 833 0.0 4
(BJ379473) Dictyostelium discoideum cDNA clone:ddc35a02, 3' ... 632 0.0 4
(BJ366186) Dictyostelium discoideum cDNA clone:ddc38h01, 5' ... 611 0.0 3
(BJ362093) Dictyostelium discoideum cDNA clone:ddc20l04, 5' ... 813 0.0 2
(BJ372660) Dictyostelium discoideum cDNA clone:ddc13g18, 3' ... 557 0.0 3
(BJ379895) Dictyostelium discoideum cDNA clone:ddc36h12, 3' ... 920 0.0 1
(BJ385430) Dictyostelium discoideum cDNA clone:ddc54m23, 3' ... 914 0.0 1
(BJ383144) Dictyostelium discoideum cDNA clone:ddc52c02, 3' ... 569 0.0 4
(BJ380321) Dictyostelium discoideum cDNA clone:ddc37e19, 3' ... 652 0.0 3
(BJ390597) Dictyostelium discoideum cDNA clone:dds23c02, 5' ... 490 0.0 3
(BJ380364) Dictyostelium discoideum cDNA clone:ddc37n20, 3' ... 438 0.0 4
(BJ370215) Dictyostelium discoideum cDNA clone:ddc53g11, 5' ... 658 0.0 2
(BJ384804) Dictyostelium discoideum cDNA clone:ddc50d22, 3' ... 533 e-146 1
(BJ401365) Dictyostelium discoideum cDNA clone:dds23c02, 3' ... 505 e-138 1
(BJ378400) Dictyostelium discoideum cDNA clone:ddc31f24, 3' ... 502 e-137 1
(BJ379141) Dictyostelium discoideum cDNA clone:ddc33l23, 3' ... 494 e-135 1
(BJ380416) Dictyostelium discoideum cDNA clone:ddc38h01, 3' ... 426 e-122 3
(BJ403744) Dictyostelium discoideum cDNA clone:dds26k04, 3' ... 172 e-118 3
(BJ384986) Dictyostelium discoideum cDNA clone:ddc51n07, 3' ... 410 e-109 1
(BJ406250) Dictyostelium discoideum cDNA clone:dds34l14, 3' ... 408 e-109 1
(BJ405983) Dictyostelium discoideum cDNA clone:dds33a22, 3' ... 359 4e-94 1
(BJ382308) Dictyostelium discoideum cDNA clone:ddc44g09, 3' ... 341 8e-89 1
(BJ378859) Dictyostelium discoideum cDNA clone:ddc33f03, 3' ... 335 5e-87 1
(BJ382101) Dictyostelium discoideum cDNA clone:ddc43k22, 3' ... 301 7e-77 1
(BJ379581) Dictyostelium discoideum cDNA clone:ddc35g09, 3' ... 299 3e-76 1
(BJ384371) Dictyostelium discoideum cDNA clone:ddc49p03, 3' ... 283 2e-71 1
(BJ379270) Dictyostelium discoideum cDNA clone:ddc34e12, 3' ... 258 1e-63 1
(U67940) Dictyostelium discoideum ORFveg106 mRNA, complete cds. 84 4e-31 9
(BJ378923) Dictyostelium discoideum cDNA clone:ddc33c08, 3' ... 143 4e-29 1
(AU061530) Dictyostelium discoideum slug cDNA, clone SLE572. 84 8e-22 4
(BJ383523) Dictyostelium discoideum cDNA clone:ddc53g11, 3' ... 103 2e-21 3
(AU072773) Dictyostelium discoideum slug cDNA, clone SSA834. 103 2e-20 2
(BJ356107) Dictyostelium discoideum cDNA clone:dda59c12, 3' ... 78 7e-20 4
(BJ324749) Dictyostelium discoideum cDNA clone:dda7e24, 5' e... 64 2e-19 5
(BJ336429) Dictyostelium discoideum cDNA clone:dda53k20, 5' ... 64 2e-19 5
(AC115684) Dictyostelium discoideum chromosome 2 map 3108975... 62 2e-18 12
(BJ396092) Dictyostelium discoideum cDNA clone:dds41h08, 5' ... 68 8e-18 4
(BJ335530) Dictyostelium discoideum cDNA clone:dda50g18, 5' ... 66 6e-16 2
(BJ333601) Dictyostelium discoideum cDNA clone:dda43g07, 5' ... 66 6e-16 2
(BJ335396) Dictyostelium discoideum cDNA clone:dda50e03, 5' ... 66 6e-16 2
(BJ392786) Dictyostelium discoideum cDNA clone:dds28n21, 5' ... 66 6e-16 2
(BJ337906) Dictyostelium discoideum cDNA clone:dda59j12, 5' ... 66 6e-16 2
(BJ396067) Dictyostelium discoideum cDNA clone:dds41b12, 5' ... 66 6e-16 2
(BJ331109) Dictyostelium discoideum cDNA clone:dda33m21, 5' ... 66 6e-16 2
(BJ338957) Dictyostelium discoideum cDNA clone:dda63k13, 5' ... 66 6e-16 2
(BJ339485) Dictyostelium discoideum cDNA clone:dda65c17, 5' ... 66 7e-16 2
(BJ392417) Dictyostelium discoideum cDNA clone:dds27h16, 5' ... 68 1e-15 4
(BJ366688) Dictyostelium discoideum cDNA clone:ddc39k24, 5' ... 68 1e-15 4
(BJ392365) Dictyostelium discoideum cDNA clone:dds27k07, 5' ... 68 1e-15 4
(BJ367530) Dictyostelium discoideum cDNA clone:ddc43f04, 5' ... 68 1e-15 4
(BJ393035) Dictyostelium discoideum cDNA clone:dds29i24, 5' ... 68 1e-15 4
(BJ394582) Dictyostelium discoideum cDNA clone:dds35p16, 5' ... 68 1e-15 4
(BJ370394) Dictyostelium discoideum cDNA clone:ddc53p21, 5' ... 68 1e-15 4
(BJ395020) Dictyostelium discoideum cDNA clone:dds37j09, 5' ... 68 1e-15 4
(BJ397519) Dictyostelium discoideum cDNA clone:dds46i17, 5' ... 68 1e-15 4
(BJ334020) Dictyostelium discoideum cDNA clone:dda44h19, 5' ... 66 2e-15 2
(BJ333754) Dictyostelium discoideum cDNA clone:dda43l23, 5' ... 62 1e-14 2
(BJ397162) Dictyostelium discoideum cDNA clone:dds45e09, 5' ... 68 2e-14 4
(BJ334814) Dictyostelium discoideum cDNA clone:dda47m21, 5' ... 60 3e-14 2
(BJ382249) Dictyostelium discoideum cDNA clone:ddc44j01, 3' ... 64 6e-14 2
(BJ411976) Dictyostelium discoideum cDNA clone:ddv6d13, 5' e... 54 2e-13 4
(BJ396356) Dictyostelium discoideum cDNA clone:dds42k16, 5' ... 68 2e-13 3
(BJ395286) Dictyostelium discoideum cDNA clone:dds38g07, 5' ... 68 2e-13 3
(BJ371282) Dictyostelium discoideum cDNA clone:ddc57i09, 5' ... 68 2e-13 3
(BJ395438) Dictyostelium discoideum cDNA clone:dds38j22, 5' ... 68 2e-13 3
(BJ368980) Dictyostelium discoideum cDNA clone:ddc48f23, 5' ... 68 3e-13 3
(BJ393169) Dictyostelium discoideum cDNA clone:dds30j10, 5' ... 68 3e-13 3
(BJ425093) Dictyostelium discoideum cDNA clone:ddv54i18, 5' ... 84 3e-13 3
(BJ396692) Dictyostelium discoideum cDNA clone:dds43g18, 5' ... 68 3e-13 3
(BJ396774) Dictyostelium discoideum cDNA clone:dds43l22, 5' ... 68 3e-13 3
(BJ396627) Dictyostelium discoideum cDNA clone:dds43i11, 5' ... 68 3e-13 3
(BJ333164) Dictyostelium discoideum cDNA clone:dda41m13, 5' ... 66 8e-13 3
(BJ386933) Dictyostelium discoideum cDNA clone:dds11o11, 5' ... 66 1e-12 3
(BJ391180) Dictyostelium discoideum cDNA clone:dds15p11, 5' ... 66 1e-12 3
(BJ362824) Dictyostelium discoideum cDNA clone:ddc23l15, 5' ... 54 1e-12 5
(BJ331260) Dictyostelium discoideum cDNA clone:dda34h13, 5' ... 68 3e-12 3
(BJ393735) Dictyostelium discoideum cDNA clone:dds32n08, 5' ... 68 3e-12 4
(AB053203) Dictyostelium discoideum psiA mRNA for Psi facor,... 52 6e-12 5
(BJ367041) Dictyostelium discoideum cDNA clone:ddc41j06, 5' ... 68 1e-11 2
(BJ370536) Dictyostelium discoideum cDNA clone:ddc54p10, 5' ... 68 2e-11 2
(BJ367439) Dictyostelium discoideum cDNA clone:ddc42b19, 5' ... 68 2e-11 2
(BJ369352) Dictyostelium discoideum cDNA clone:ddc50b08, 5' ... 68 2e-11 2
(BJ331198) Dictyostelium discoideum cDNA clone:dda34f07, 5' ... 68 2e-11 2
(BJ337295) Dictyostelium discoideum cDNA clone:dda56n22, 5' ... 68 3e-11 2
(BJ392644) Dictyostelium discoideum cDNA clone:dds28m08, 5' ... 68 3e-11 2
(BJ395048) Dictyostelium discoideum cDNA clone:dds37p11, 5' ... 68 3e-11 2
(BJ369009) Dictyostelium discoideum cDNA clone:ddc48o20, 5' ... 68 3e-11 2
(BJ395245) Dictyostelium discoideum cDNA clone:dds38l03, 5' ... 68 3e-11 2
(BJ338490) Dictyostelium discoideum cDNA clone:dda61p18, 5' ... 68 3e-11 2
(BJ366819) Dictyostelium discoideum cDNA clone:ddc40i09, 5' ... 68 3e-11 2
(BJ396129) Dictyostelium discoideum cDNA clone:dds41p11, 5' ... 68 3e-11 2
(BJ392302) Dictyostelium discoideum cDNA clone:dds27k05, 5' ... 68 3e-11 2
(BJ395554) Dictyostelium discoideum cDNA clone:dds39e12, 5' ... 68 3e-11 2
(BJ364494) Dictyostelium discoideum cDNA clone:ddc31n22, 5' ... 68 3e-11 2

>(BJ375829) Dictyostelium discoideum cDNA clone:ddc20l04, 3' end,
single read.
Length = 696

Score = 965 bits (487), Expect(3) = 0.0
Identities = 487/487 (100%)
Strand = Plus / Minus


Query: 1868 attgtgatgatggaaataaatgtacaaatgatttttgtaaagttgatattggctgcgttc 1927
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 attgtgatgatggaaataaatgtacaaatgatttttgtaaagttgatattggctgcgttc 468


Query: 1928 atagtaatatcacttgtgaatcaagttcagtttgtatggttgcaagttgtgattcgaata 1987
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 atagtaatatcacttgtgaatcaagttcagtttgtatggttgcaagttgtgattcgaata 408


Query: 1988 aaggttgtattgaatcaccaatagtctgtccatcaagtgcattttgtttagtggctcaat 2047
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 aaggttgtattgaatcaccaatagtctgtccatcaagtgcattttgtttagtggctcaat 348


Query: 2048 gtgatgtaggttatggtggttgtaatcaatatgataaagtttgtatacctgatgatcctc 2107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 gtgatgtaggttatggtggttgtaatcaatatgataaagtttgtatacctgatgatcctc 288


Query: 2108 attgtcaatatggtatttgtgataactcaactaaaaaatgtacatttaaagatttcgatc 2167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 attgtcaatatggtatttgtgataactcaactaaaaaatgtacatttaaagatttcgatc 228


Query: 2168 cacttccattcagatgtcaatctgtggctgtaaaagcaggtgttattggtggtgctgcaa 2227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 cacttccattcagatgtcaatctgtggctgtaaaagcaggtgttattggtggtgctgcaa 168


Query: 2228 ttgctggtgtagttgttggtggtgccgttgcacttggtttagctttatttggtgctaaag 2287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 ttgctggtgtagttgttggtggtgccgttgcacttggtttagctttatttggtgctaaag 108


Query: 2288 ctggttataatcattggatgtctttgaaaaataatcagatggcaacctcatctgtaaatc 2347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 ctggttataatcattggatgtctttgaaaaataatcagatggcaacctcatctgtaaatc 48


Query: 2348 cattata 2354
|||||||
Sbjct: 47 cattata 41

Score = 335 bits (169), Expect(3) = 0.0
Identities = 169/169 (100%)
Strand = Plus / Minus


Query: 1698 aaaatgttcaaacttaccagtggtttgtgagattaaagatgcttgtaacaaaaccacaat 1757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 aaaatgttcaaacttaccagtggtttgtgagattaaagatgcttgtaacaaaaccacaat 637


Query: 1758 gtgatatggtcactggtaaatgcattgtcaccgataattgtaatgacaataacatatgca 1817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 gtgatatggtcactggtaaatgcattgtcaccgataattgtaatgacaataacatatgca 577


Query: 1818 gtgacgataggttgctcattggatggcacatgtattcacactaaaaaga 1866
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 gtgacgataggttgctcattggatggcacatgtattcacactaaaaaga 528

Score = 52.0 bits (26), Expect(3) = 0.0
Identities = 28/29 (96%)
Strand = Plus / Minus


Query: 2356 gaaccatcaccacatcaaggtacaaatcc 2384
|||||||||||||| ||||||||||||||
Sbjct: 40 gaaccatcaccacancaaggtacaaatcc 12

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 2,719,968,434
Number of extensions: 164391387
Number of successful extensions: 14102104
Number of sequences better than 10.0: 507
Length of query: 2674
Length of database: 95,242,211,685
Length adjustment: 25
Effective length of query: 2649
Effective length of database: 97,216,030,006
Effective search space: 257525263485894
Effective search space used: 257525263485894
X1: 11 (21.8 bits)
S2: 23 (46.1 bits)

protein update 2009. 6.30
Homology vs Protein
Query= Contig-U11582-1 (Contig-U11582-1Q) /CSM_Contig/Contig-U11582-1Q.Seq.d
(2674 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor; 630 0.0
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor; 261 e-170
(Q557E9) RecName: Full=Protein psiG; Flags: Precursor; &AC11568... 155 3e-76
(Q94494) RecName: Full=Protein psiH; Flags: Precursor; &U67940_... 134 2e-71
(Q54VS2) RecName: Full=Protein psiP; Flags: Precursor; 113 7e-62
(Q54P69) RecName: Full=Protein psiM; Flags: Precursor; 152 2e-59
(Q54C31) RecName: Full=Protein psiR; Flags: Precursor; 134 2e-56
(Q54FD8) RecName: Full=Protein psiD; Flags: Precursor; 135 3e-56
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor; 115 5e-51
(Q1ZXC5) RecName: Full=Protein psiC; Flags: Precursor; 130 7e-51
(Q55FQ4) RecName: Full=Protein psiB; Flags: Precursor; 99 2e-48
(Q86HT1) RecName: Full=Protein psiL; Flags: Precursor; &AC11695... 127 8e-43
(Q968Z6) RecName: Full=Protein psiA; AltName: Full=Prespore-cell... 97 8e-33
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos... 141 1e-31
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso... 132 5e-29
(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell... 127 2e-27
A26838(A26838)prestalk protein precursor - slime mold (Dictyoste... 127 2e-27
(Q55FQ5) RecName: Full=Protein psiS; Flags: Precursor; 80 2e-27
S44208(S44208) extracellular matrix protein B - Dictyostelium mi... 127 3e-27
AM746676_9122(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 82 3e-25
A27020(A27020)DIF-induced prestalk pDd63 protein precursor - sli... 117 2e-24
CP001614_1628(CP001614|pid:none) Teredinibacter turnerae T7901, ... 86 2e-23
AM746676_5746(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 86 5e-23
AM746676_3288(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 72 1e-16
DQ384333_1(DQ384333|pid:none) Physarum polycephalum prestalk pro... 71 1e-14
CP001281_1144(CP001281|pid:none) Thauera sp. MZ1T, complete geno... 59 2e-14
AM746676_5248(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 70 7e-14
EU055603_1(EU055603|pid:none) Fibrobacter succinogenes subsp. su... 52 3e-11
CP000155_6215(CP000155|pid:none) Hahella chejuensis KCTC 2396, c... 49 1e-10
AM746676_3456(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 70 3e-10
CP000113_6294(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 54 2e-05
AX045117_1(AX045117|pid:none) Sequence 25 from Patent WO0066730. 46 3e-05
AB385108_1(AB385108|pid:none) Synthetic construct DNA, clone: pF... 46 3e-05
AX045119_1(AX045119|pid:none) Sequence 27 from Patent WO0066730. 46 3e-05
AY289606_1(AY289606|pid:none) Danio rerio progranulin-b mRNA, co... 39 2e-04
AM746676_5360(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 51 2e-04
BX510920_1(BX510920|pid:none) Zebrafish DNA sequence from clone ... 40 3e-04
(P02468) RecName: Full=Laminin subunit gamma-1; AltName: Full=La... 42 3e-04
BC165945_1(BC165945|pid:none) Synthetic construct Mus musculus c... 42 3e-04
AX045121_1(AX045121|pid:none) Sequence 29 from Patent WO0066730.... 41 4e-04
AX045123_1(AX045123|pid:none) Sequence 31 from Patent WO0066730.... 41 4e-04
AJ133651_1(AJ133651|pid:none) Trichoderma harzianum cmp1 gene. 50 6e-04
AB255883_1(AB255883|pid:none) Rhyparobia maderae VgR mRNA for vi... 50 6e-04
(P35953) RecName: Full=Very low-density lipoprotein receptor; ... 48 0.002
M61131_1(M61131|pid:none) T.brucei acidic integral membrane prot... 47 0.003
L33417_1(L33417|pid:none) Mus musculus very low density lipoprot... 47 0.004
L22431_1(L22431|pid:none) Human very low density lipoprotein rec... 47 0.005
BC013622_1(BC013622|pid:none) Mus musculus very low density lipo... 47 0.005
AL450467_2(AL450467|pid:none) Human DNA sequence from clone RP11... 47 0.005
AY265357_1(AY265357|pid:none) Homo sapiens glycoprotein receptor... 47 0.005
(P98156) RecName: Full=Very low-density lipoprotein receptor; ... 47 0.005
(P98155) RecName: Full=Very low-density lipoprotein receptor; ... 47 0.005
AB208822_1(AB208822|pid:none) Homo sapiens mRNA for Very low-den... 47 0.005
(A8MX34) RecName: Full=Putative keratin-associated protein 10-li... 39 0.005
AC115680_32(AC115680|pid:none) Dictyostelium discoideum chromoso... 42 0.005
AF373841_1(AF373841|pid:none) Gallus gallus laminin gamma 1 mRNA... 37 0.005
AY265358_1(AY265358|pid:none) Homo sapiens glycoprotein receptor... 46 0.006
AK295005_1(AK295005|pid:none) Homo sapiens cDNA FLJ61253 complet... 46 0.006
AC007556_2(AC007556|pid:none) Homo sapiens BAC clone RP11-18C9 f... 46 0.006
(P98164) RecName: Full=Low-density lipoprotein receptor-related ... 46 0.006
U28735_10(U28735|pid:none) Caenorhabditis elegans cosmid F48E3, ... 46 0.006
EU972808_1(EU972808|pid:none) Zea mays clone 388422 unknown mRNA. 46 0.008
BC129830_1(BC129830|pid:none) Homo sapiens tenascin R (restricti... 46 0.008
X98085_1(X98085|pid:none) H.sapiens mRNA for tenascin-R. 46 0.008
AK295823_1(AK295823|pid:none) Homo sapiens cDNA FLJ60578 complet... 46 0.008
(Q8BYI9) RecName: Full=Tenascin-R; Short=TN-R; AltName:... 46 0.008
(Q05546) RecName: Full=Tenascin-R; Short=TN-R; AltName:... 46 0.008
BC132392_1(BC132392|pid:none) Mus musculus tenascin R, mRNA (cDN... 46 0.008
Z94055_1(Z94055|pid:none) Human DNA sequence from clone RP1-24M1... 46 0.008
AE017349_30(AE017349|pid:none) Cryptococcus neoformans var. neof... 45 0.011
AB031297_1(AB031297|pid:none) Sarcophaga peregrina mRNA for 120-... 45 0.014
AM746676_6052(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 45 0.014
AB006906_1(AB006906|pid:none) Xenopus laevis mRNA for vitellogen... 45 0.018
AM050637_1(AM050637|pid:none) Blattella germanica mRNA for vitel... 45 0.018
U73710_1(U73710|pid:none) Entamoeba dispar Gal/GalNAc-inhibitabl... 45 0.018
A56136(A56136)jagged protein precursor - rat 44 0.024
AF374376_24(AF374376|pid:none) Oikopleura dioica clone BAC clone... 35 0.036
CP000113_1974(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 44 0.040
DQ900934_1(DQ900934|pid:none) Ciona intestinalis gamma-carboxygl... 44 0.040
CP000113_6723(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 44 0.040
I48952(I48952;S48217) VLDL receptor precursor, long splice form ... 43 0.053
EU072824_1(EU072824|pid:none) Drosophila americana isolate IR04.... 43 0.053
AB073427_1(AB073427|pid:none) Ciona savignyi mRNA for Delta, com... 36 0.062
(P98157) RecName: Full=Low-density lipoprotein receptor-related ... 43 0.069
(A8MXZ3) RecName: Full=Putative keratin-associated protein 9-2-l... 39 0.086
BC166351_1(BC166351|pid:none) Xenopus tropicalis fibrillin 3, mR... 42 0.090
EF648000_1(EF648000|pid:none) Ginglymostoma cirratum complement ... 42 0.090
EF647999_1(EF647999|pid:none) Ginglymostoma cirratum complement ... 42 0.090
AB001327_1(AB001327|pid:none) Halocynthia roretzi mRNA for HrNot... 42 0.090
AM746676_7160(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 42 0.090
EF647997_1(EF647997|pid:none) Ginglymostoma cirratum complement ... 42 0.090
AY262832_1(AY262832|pid:none) Solenopsis invicta vitellogenin re... 39 0.099
BX293980_512(BX293980|pid:none) Mycoplasma mycoides subsp. mycoi... 42 0.12
U88173_9(U88173|pid:none) Caenorhabditis elegans cosmid F46F11, ... 42 0.12
AB210518_1(AB210518|pid:none) Ciona intestinalis mRNA for jagged... 42 0.15
AF369477_1(AF369477|pid:none) Mus musculus strain 129P3/J lipopr... 42 0.15
EU974210_1(EU974210|pid:none) Zea mays clone 442907 keratin-asso... 42 0.15
AF016537_1(AF016537|pid:none) Bos taurus very low density lipopr... 42 0.15
AK154429_1(AK154429|pid:none) Mus musculus NOD-derived CD11c +ve... 42 0.15
AB052951_1(AB052951|pid:none) Homo sapiens mRNA for SRECRP-1, co... 42 0.15
(Q91ZX7) RecName: Full=Prolow-density lipoprotein receptor-relat... 42 0.15
AF522196_1(AF522196|pid:none) Homo sapiens scavenger receptor ty... 42 0.15
AB112441_1(AB112441|pid:none) Ciona intestinalis Ci-VWFL1 mRNA f... 42 0.15
AF489912_1(AF489912|pid:none) Chikusichloa aquatica maturase (ma... 42 0.15
AF483029_1(AF483029|pid:none) Boltenia villosa tenascin-x like p... 42 0.15
CR352252_1(CR352252|pid:none) Zebrafish DNA sequence from clone ... 34 0.16
AK137635_1(AK137635|pid:none) Mus musculus adult female vagina c... 41 0.20
(Q07954) RecName: Full=Prolow-density lipoprotein receptor-relat... 41 0.20
AF501275_1(AF501275|pid:none) Entamoeba histolytica clone C3 Gal... 41 0.20
AF148671_1(AF148671|pid:none) Oryza ridleyi maturase (matK) gene... 41 0.20
AM746676_2497(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 41 0.20
(P59222) RecName: Full=Scavenger receptor class F member 2; AltN... 41 0.20
AF148674_1(AF148674|pid:none) Oryza granulata maturase (matK) ge... 41 0.20
D87558_1(D87558|pid:none) Gallus gallus mRNA for C-Serrate-2, pa... 41 0.20
S25111(S25111;S32554) alpha-2-macroglobulin receptor precursor -... 41 0.20
AK147303_1(AK147303|pid:none) Mus musculus adult male brain UNDE... 41 0.20
(A8MUX0) RecName: Full=Putative keratin-associated protein 10-li... 41 0.26
AC116967_8(AC116967|pid:none) Dictyostelium discoideum chromosom... 41 0.26
AF312356_1(AF312356|pid:none) Muhlenbergia wrightii maturase (ma... 41 0.26
AF148669_1(AF148669|pid:none) Porteresia coarctata maturase (mat... 41 0.26
AP007155_961(AP007155|pid:none) Aspergillus oryzae RIB40 genomic... 40 0.34
AF312337_1(AF312337|pid:none) Lintonia nutans maturase (matK) ge... 40 0.34
AE014298_1834(AE014298|pid:none) Drosophila melanogaster chromos... 40 0.34
AF312330_1(AF312330|pid:none) Chloris truncata maturase (matK) g... 40 0.34
AC116960_45(AC116960|pid:none) Dictyostelium discoideum chromoso... 40 0.34
AF312332_1(AF312332|pid:none) Enteropogon dolichostachyus matura... 40 0.34
AB095016_1(AB095016|pid:none) Cynops pyrrhogaster Notch-1 mRNA f... 40 0.34
X68794_1(X68794|pid:none) Drosophila melanogaster mRNA for type ... 40 0.34
DQ310728_1(DQ310728|pid:none) Xenopus laevis fibrillin mRNA, par... 40 0.34
AM270078_56(AM270078|pid:none) Aspergillus niger contig An04c017... 40 0.44
AX647833_1(AX647833|pid:none) Sequence 2025 from Patent EP1270724. 40 0.45
AF312336_1(AF312336|pid:none) Tetrapogon tenellus maturase (matK... 40 0.45
CP000513_277(CP000513|pid:none) Dichelobacter nodosus VCS1703A, ... 40 0.45
AF489916_1(AF489916|pid:none) Prosphytochloa prehensilis maturas... 40 0.45
AY765220_1(AY765220|pid:none) Tetrahymena pyriformis GL metallot... 40 0.45
(Q8MCM1) RecName: Full=Maturase K; AltName: Full=Intron maturase... 40 0.45
AB201472_1(AB201472|pid:none) Bombyx mori LpR2 mRNA for lipophor... 40 0.45
AB201474_1(AB201474|pid:none) Bombyx mori LpR4 mRNA for lipophor... 40 0.45
AF148677_1(AF148677|pid:none) Leersia perrieri maturase (matK) g... 40 0.45
AK142929_1(AK142929|pid:none) Mus musculus 0 day neonate lung cD... 40 0.45
AY792567_1(AY792567|pid:none) Luziola fluitans maturase K (matK)... 40 0.45
AF148653_1(AF148653|pid:none) Oryza glumaepatula maturase (matK)... 40 0.58
AF148651_1(AF148651|pid:none) Oryza rufipogon maturase (matK) ge... 40 0.58
AF148652_1(AF148652|pid:none) Oryza nivara maturase (matK) gene,... 40 0.58
AF148662_1(AF148662|pid:none) Oryza punctata 105607 maturase (ma... 40 0.58
AM746676_9116(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 40 0.58
AF148661_1(AF148661|pid:none) Oryza punctata 104071 maturase (ma... 40 0.58
AK128694_1(AK128694|pid:none) Homo sapiens cDNA FLJ46861 fis, cl... 40 0.58
AF144578_1(AF144578|pid:none) Bouteloua curtipendula maturase (m... 40 0.58
AF148650_1(AF148650|pid:none) Oryza sativa maturase (matK) gene,... 40 0.58
AF501273_1(AF501273|pid:none) Entamoeba histolytica clone C1 Gal... 40 0.58
EU325680_3(EU325680|pid:none) Brachypodium distachyon cultivar B... 40 0.58
AF148659_1(AF148659|pid:none) Oryza eichingeri maturase (matK) g... 40 0.58
AC092750_16(AC092750|pid:none) Oryza sativa (japonica cultivar-g... 40 0.58
AF148665_1(AF148665|pid:none) Oryza latifolia maturase (matK) ge... 40 0.58
AF144595_1(AF144595|pid:none) Trichoneura grandiglumis maturase ... 40 0.58
EU955480_1(EU955480|pid:none) Zea mays clone 1534022 unknown mRNA. 40 0.58
AM746676_988(AM746676|pid:none) Sorangium cellulosum 'So ce 56' ... 40 0.58
(P0C381) RecName: Full=Maturase K; AltName: Full=Intron maturase... 40 0.58
AL592545_3(AL592545|pid:none) Mouse DNA sequence from clone RP23... 40 0.58
AF148654_1(AF148654|pid:none) Oryza glaberrima maturase (matK) g... 40 0.58
AF489917_1(AF489917|pid:none) Zizaniopsis villanensis maturase (... 40 0.58
AF489528_1(AF489528|pid:none) Homo sapiens transforming growth f... 39 0.76
AF312345_1(AF312345|pid:none) Diplachne malabarica maturase (mat... 39 0.76
(A2ARV4) RecName: Full=Low-density lipoprotein receptor-related ... 39 0.76
A35626(A35626) transforming growth factor beta-1-binding protein... 39 0.76
BC144128_1(BC144128|pid:none) Homo sapiens latent transforming g... 39 0.76
AF144603_1(AF144603|pid:none) Plectrachne pungens maturase (matK... 39 0.76
AM746676_4329(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 39 0.76
AK298027_1(AK298027|pid:none) Homo sapiens cDNA FLJ51010 complet... 39 0.76
AK049346_1(AK049346|pid:none) Mus musculus ES cells cDNA, RIKEN ... 39 0.76
AF312338_1(AF312338|pid:none) Dactyloctenium radulans maturase (... 39 0.76
AB208801_1(AB208801|pid:none) Homo sapiens mRNA for latent trans... 39 0.76
FJ222591_1(FJ222591|pid:none) Periplaneta americana Notch protei... 39 0.76
L14815_1(L14815|pid:none) Entamoeba histolytica HM-1:IMSS galact... 39 0.76
(Q9QXX0) RecName: Full=Protein jagged-1; Short=Jagged1;... 39 0.76
AC115680_25(AC115680|pid:none) Dictyostelium discoideum chromoso... 31 0.85
AK302554_1(AK302554|pid:none) Homo sapiens cDNA FLJ51576 complet... 39 0.99
Z98877_8(Z98877|pid:none) Caenorhabditis elegans YAC Y69H2, comp... 39 0.99
AF144596_1(AF144596|pid:none) Tridens brasiliensis maturase (mat... 39 0.99
AF164428_1(AF164428|pid:none) Kengia songorica maturase (matK) g... 39 0.99
(Q8MCN0) RecName: Full=Maturase K; AltName: Full=Intron maturase... 39 0.99
AF312350_1(AF312350|pid:none) Reederochloa eludens maturase (mat... 39 0.99
CP000113_6200(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 39 0.99
(Q99087) RecName: Full=Low-density lipoprotein receptor 1; ... 39 0.99
(P78504) RecName: Full=Protein jagged-1; Short=Jagged1;... 39 0.99
AF312351_1(AF312351|pid:none) Neostapfia colusana maturase (matK... 39 0.99
AF164391_1(AF164391|pid:none) Sasa kurilensis maturase (matK) ge... 39 0.99
AF144591_1(AF144591|pid:none) Tragus berteronianus maturase (mat... 39 0.99
(P98159) RecName: Full=Serine protease nudel; EC=3.4.21... 39 0.99
(Q9Y5Q5) RecName: Full=Atrial natriuretic peptide-converting enz... 39 0.99
AK312722_1(AK312722|pid:none) Homo sapiens cDNA, FLJ93126, highl... 39 0.99
AF312333_1(AF312333|pid:none) Gymnopogon brevifolius maturase (m... 39 0.99
A57096(A57096) nudel protein precursor - fruit fly (Drosophila m... 39 0.99
QRXLL1(A40388)LDL receptor 1 precursor - African clawed frog 39 0.99
AB077047_1(AB077047|pid:none) Periplaneta americana VgR mRNA for... 39 0.99
EF125165_1(EF125165|pid:none) Arundinaria tecta maturase K (matK... 39 0.99
(Q9TIA9) RecName: Full=Maturase K; AltName: Full=Intron maturase... 39 0.99
AF312348_1(AF312348|pid:none) Vaseyochloa multinervosa maturase ... 39 0.99
T25768(T25768)hypothetical protein F46F11.7 - Caenorhabditis ele... 39 0.99
(P98158) RecName: Full=Low-density lipoprotein receptor-related ... 39 0.99
U61276_1(U61276|pid:none) Human transmembrane protein Jagged 1 (... 39 0.99
EU285556_1(EU285556|pid:none) Amphimedon queenslandica hedgling ... 39 0.99
BC098393_1(BC098393|pid:none) Homo sapiens jagged 1 (Alagille sy... 39 0.99
EU326305_1(EU326305|pid:none) Homo sapiens corin, serine peptida... 39 0.99
AL662830_12(AL662830|pid:none) Human DNA sequence from clone XXb... 32 1.2
BX927239_21(BX927239|pid:none) Human DNA sequence from clone DAM... 32 1.2
CR933878_21(CR933878|pid:none) Human DNA sequence from clone DAM... 32 1.2
U89335_1(U89335|pid:none) Homo sapiens chromosome 6 notch4 (NOTC... 32 1.2
AB041857_1(AB041857|pid:none) Ciona intestinalis mRNA for Ci-MET... 31 1.3
AF097183_1(AF097183|pid:none) Cryptosporidium parvum HC-10 gene,... 39 1.3
U00046_2(U00046|pid:none) Caenorhabditis elegans cosmid R13F6, c... 39 1.3
(Q8MCN3) RecName: Full=Maturase K; AltName: Full=Intron maturase... 39 1.3
AM746676_2014(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 39 1.3
AF028816_1(AF028816|pid:none) Homo sapiens laminin beta-4 chain ... 39 1.3
AY540953_1(AY540953|pid:none) Strongylocentrotus purpuratus prot... 39 1.3
AY189778_1(AY189778|pid:none) Caragana korshinskii maturase-like... 39 1.3
EF125172_1(EF125172|pid:none) Himalayacalamus asper maturase K (... 39 1.3
AF375477_1(AF375477|pid:none) Danio rerio granulin-A precursor, ... 39 1.3
BC151354_1(BC151354|pid:none) Bos taurus latent transforming gro... 39 1.3
AB078090_1(AB078090|pid:none) Hordeum brachyantherum subsp. brac... 39 1.3
BC140725_1(BC140725|pid:none) Homo sapiens keratin associated pr... 39 1.3
BC096854_1(BC096854|pid:none) Danio rerio granulin b, mRNA (cDNA... 39 1.3
AB206835_1(AB206835|pid:none) Caenorhabditis elegans ten-1 mRNA ... 39 1.3
A30363(A30363)glycoprotein GP330, renal - rat (fragments) 39 1.3
AK300385_1(AK300385|pid:none) Homo sapiens cDNA FLJ61398 complet... 39 1.3
T16743(T16743)hypothetical protein R13F6.4 - Caenorhabditis eleg... 39 1.3
BC045172_1(BC045172|pid:none) Homo sapiens laminin, beta 4, mRNA... 39 1.3
AF312326_1(AF312326|pid:none) Melanocenchris abyssinica maturase... 39 1.3
U00046_1(U00046|pid:none) Caenorhabditis elegans cosmid R13F6, c... 39 1.3
(A4D0S4) RecName: Full=Laminin subunit beta-4; AltName: Full=Lam... 39 1.3
AB201473_1(AB201473|pid:none) Bombyx mori LpR3 mRNA for lipophor... 39 1.3
AF007248_1(AF007248|pid:none) Mus musculus mutant fibrillin-1 (F... 29 1.5
BC120950_1(BC120950|pid:none) Homo sapiens keratin associated pr... 38 1.7
AF164386_1(AF164386|pid:none) Olyra latifolia maturase (matK) ge... 38 1.7
AF312335_1(AF312335|pid:none) Schedonnardus paniculatus maturase... 38 1.7
AB088805_1(AB088805|pid:none) Phyllostachys bambusoides chloropl... 38 1.7
(P48190) RecName: Full=Maturase K; AltName: Full=Intron maturase; 38 1.7
(Q8MCN9) RecName: Full=Maturase K; AltName: Full=Intron maturase... 38 1.7
(Q8MCM7) RecName: Full=Maturase K; AltName: Full=Intron maturase... 38 1.7
BC119472_1(BC119472|pid:none) Mus musculus predicted gene, OTTMU... 38 1.7
(P60370) RecName: Full=Keratin-associated protein 10-5; AltName:... 38 1.7
(Q8MCN2) RecName: Full=Maturase K; AltName: Full=Intron maturase... 38 1.7
(Q8MCL7) RecName: Full=Maturase K; AltName: Full=Intron maturase... 38 1.7
BC151711_1(BC151711|pid:none) Bos taurus keratin associated prot... 38 1.7
AF463419_1(AF463419|pid:none) Naegleria gruberi basal body prote... 38 1.7
BC104358_1(BC104358|pid:none) Mus musculus predicted gene, OTTMU... 38 1.7
BX537264_1(BX537264|pid:none) Zebrafish DNA sequence from clone ... 38 1.7
(Q9TI97) RecName: Full=Maturase K; AltName: Full=Intron maturase... 38 1.7
AB076352_1(AB076352|pid:none) Homo sapiens KRTAP18.5 mRNA for ke... 38 1.7
S40992(S40992)hypothetical protein K04H4.2 - Caenorhabditis eleg... 38 1.7
AL590997_35(AL590997|pid:none) Mouse DNA sequence from clone RP2... 38 1.7
CR383662_1(CR383662|pid:none) Zebrafish DNA sequence from clone ... 38 1.7
AF164425_1(AF164425|pid:none) Microchloa caffra maturase (matK) ... 38 1.7
(Q5YJV6) RecName: Full=Maturase K; AltName: Full=Intron maturase... 38 1.7
AF312331_1(AF312331|pid:none) Cynodon transvaalensis maturase (m... 38 1.7
EU420056_1(EU420056|pid:none) Tetrahymena pigmentosa strain HG2 ... 38 1.7
AL844507_263(AL844507|pid:none) Plasmodium falciparum 3D7 chromo... 38 1.7
AF312324_1(AF312324|pid:none) Aegopogon cenchroides maturase (ma... 38 1.7
Z27078_4(Z27078|pid:none) Caenorhabditis elegans Cosmid K04H4, c... 38 1.7
Z27078_3(Z27078|pid:none) Caenorhabditis elegans Cosmid K04H4, c... 38 1.7
CP000251_2747(CP000251|pid:none) Anaeromyxobacter dehalogenans 2... 31 1.7
(P18084) RecName: Full=Integrin beta-5; Flags: Precursor; &BC00... 33 2.2
AY892655_1(AY892655|pid:none) Synthetic construct Homo sapiens c... 33 2.2
AK315429_1(AK315429|pid:none) Homo sapiens cDNA, FLJ96485, highl... 33 2.2
AF144590_1(AF144590|pid:none) Perotis rara maturase (matK) gene,... 38 2.2
(Q8R508) RecName: Full=Protocadherin Fat 3; AltName: Full=FAT tu... 38 2.2
AF144600_1(AF144600|pid:none) Muhlenbergia montana maturase (mat... 38 2.2
FJ039903_1(FJ039903|pid:none) Hordeum vulgare DEP1 (DEP1) mRNA, ... 38 2.2
BC170345_1(BC170345|pid:none) Xenopus laevis low density lipopro... 38 2.2
(Q9MUY0) RecName: Full=Maturase K; AltName: Full=Intron maturase... 38 2.2
AF288451_1(AF288451|pid:none) Xenopus laevis LTBP-1S protein mRN... 38 2.2
AE014185_202(AE014185|pid:none) Plasmodium falciparum 3D7 chromo... 38 2.2
(Q8MCM2) RecName: Full=Maturase K; AltName: Full=Intron maturase... 38 2.2
AF164426_1(AF164426|pid:none) Zoysia macrostachya maturase (matK... 38 2.2
AX647873_1(AX647873|pid:none) Sequence 2065 from Patent EP1270724. 38 2.2
AF312347_1(AF312347|pid:none) Triraphis schlechteri maturase (ma... 38 2.2
AB199643_1(AB199643|pid:none) Macaca fascicularis Corin mRNA for... 38 2.2
(A8MTY7) RecName: Full=Putative keratin-associated protein 9-2-l... 38 2.2
BC048224_1(BC048224|pid:none) Xenopus laevis granulin, mRNA (cDN... 38 2.2
(Q8MCN8) RecName: Full=Maturase K; AltName: Full=Intron maturase... 38 2.2
CR760336_1(CR760336|pid:none) Xenopus tropicalis finished cDNA, ... 38 2.2
AF312354_1(AF312354|pid:none) Calamovilfa gigantea maturase (mat... 38 2.2
AE017351_299(AE017351|pid:none) Cryptococcus neoformans var. neo... 38 2.2
AY544165_1(AY544165|pid:none) Paramecium tetraurelia putative GP... 37 2.9
AL844503_189(AL844503|pid:none) Plasmodium falciparum 3D7 chromo... 37 2.9
AY286489_1(AY286489|pid:none) Danio rerio tenascin-R mRNA, compl... 37 2.9
(Q8MCL9) RecName: Full=Maturase K; AltName: Full=Intron maturase... 37 2.9
AY123118_1(AY123118|pid:none) Griffithsia japonica growth factor... 37 2.9
AB210365_1(AB210365|pid:none) Ciona intestinalis mRNA for delta ... 37 2.9
FJ147085_1(FJ147085|pid:none) Fenneropenaeus chinensis Kazal-typ... 37 2.9
CP001016_3177(CP001016|pid:none) Beijerinckia indica subsp. indi... 37 2.9
DQ457003_71(DQ457003|pid:none) Plutella xylostella multiple nucl... 37 2.9
AY217738_25(AY217738|pid:none) Eimeria tenella apicoplast, compl... 37 2.9
AF522112_1(AF522112|pid:none) Ononis arvensis maturase (matK) ge... 37 2.9
AF203583_1(AF203583|pid:none) Amicia glandulosa maturase (matK) ... 37 2.9
AY553633_1(AY553633|pid:none) Paramecium primaurelia surface ant... 37 2.9
AF312334_1(AF312334|pid:none) Oxychloris scariosa maturase (matK... 37 2.9
AF051345_1(AF051345|pid:none) Homo sapiens latent transforming g... 28 3.4
(Q8N2S1) RecName: Full=Latent-transforming growth factor beta-bi... 28 3.4
Y13622_1(Y13622|pid:none) Homo sapiens mRNA for latent transform... 28 3.4
AF051344_1(AF051344|pid:none) Homo sapiens latent transforming g... 28 3.4
AF337950_1(AF337950|pid:none) Entamoeba histolytica Gal/GalNAc l... 32 3.5
AL844502_77(AL844502|pid:none) Plasmodium falciparum 3D7 chromos... 37 3.8
(Q9TIC1) RecName: Full=Maturase K; AltName: Full=Intron maturase... 37 3.8
DQ927304_24(DQ927304|pid:none) Tetrahymena paravorax strain RP m... 37 3.8
BC093485_1(BC093485|pid:none) Mus musculus corin, mRNA (cDNA clo... 37 3.8
AE014188_476(AE014188|pid:none) Plasmodium falciparum 3D7 chromo... 37 3.8
EU400740_1(EU400740|pid:none) Merxmuellera decora voucher Barker... 37 3.8
U03272_1(U03272|pid:none) Human fibrillin-2 mRNA, complete cds. 37 3.8
EU400747_1(EU400747|pid:none) Merxmuellera rangei voucher Barker... 37 3.8
(P41470) RecName: Full=Uncharacterized 34.4 kDa protein in LEF3-... 37 3.8
(Q25802) RecName: Full=DNA-directed RNA polymerase subunit beta'... 37 3.8
L04161_1(L04161|pid:none) Plasmodium falciparum clone Pfg377 Pfs... 37 3.8
AE014134_1265(AE014134|pid:none) Drosophila melanogaster chromos... 37 3.8
EU400746_1(EU400746|pid:none) Merxmuellera papposa voucher Barke... 37 3.8
AB209735_1(AB209735|pid:none) Homo sapiens mRNA for fibrillin 2 ... 37 3.8
M22240_1(M22240|pid:none) Autographa californica nuclear polyhed... 37 3.8
AY177669_1(AY177669|pid:none) Alhagi sparsifolia trnK gene, intr... 37 3.8
AM234563_1(AM234563|pid:none) Lagurus ovatus chloroplast matK ge... 37 3.8
U20217_1(U20217|pid:none) Mus musculus fibrillin-2 mRNA, partial... 37 3.8
AK009035_1(AK009035|pid:none) Mus musculus adult male tongue cDN... 37 3.8
(P35951) RecName: Full=Low-density lipoprotein receptor; ... 37 3.8
A54105(A54105;S17063;S31101)fibrillin-2 precursor - human 37 3.8
(P60368) RecName: Full=Keratin-associated protein 10-2; AltName:... 37 3.8
BC073022_1(BC073022|pid:none) Xenopus laevis hypothetical protei... 37 3.8
AP007166_483(AP007166|pid:none) Aspergillus oryzae RIB40 genomic... 37 3.8
AF144583_1(AF144583|pid:none) Chloris mossambicensis maturase (m... 37 3.8
AM746676_2058(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 37 3.8
(Q61555) RecName: Full=Fibrillin-2; Flags: Precursor; &A57278(A... 37 3.8
AF239608_1(AF239608|pid:none) Drosophila melanogaster SP1070 mRN... 37 3.8
(Q85ZU4) RecName: Full=Maturase K; AltName: Full=Intron maturase... 37 3.8
FN357672_3(FN357672|pid:none) Schistosoma mansoni genome sequenc... 37 3.8
A38308(A38308;A35775;S12534;S11708) integrin beta-5 chain precur... 32 4.6
AK155137_1(AK155137|pid:none) Mus musculus NOD-derived CD11c +ve... 37 4.9
BC172642_1(BC172642|pid:none) Synthetic construct Mus musculus c... 37 4.9
AL645912_4(AL645912|pid:none) Mouse DNA sequence from clone RP23... 37 4.9
AF164420_1(AF164420|pid:none) Tristachya biseriata maturase (mat... 37 4.9
(Q9W7R4) RecName: Full=Teneurin-3; Short=Ten-3; AltName... 37 4.9
AX250013_1(AX250013|pid:none) Sequence 12 from Patent WO0166747.... 37 4.9
(Q1LVF0) RecName: Full=Laminin subunit gamma-1; Flags: Precursor... 37 4.9
EF115542_4(EF115542|pid:none) Sorghum bicolor cultivar BTx623 ch... 37 4.9
AL596139_3(AL596139|pid:none) BAC A of library A from Tetraodon ... 37 4.9
AL590997_34(AL590997|pid:none) Mouse DNA sequence from clone RP2... 37 4.9
AF522115_1(AF522115|pid:none) Parochetus communis maturase (matK... 37 4.9
AF468048_1(AF468048|pid:none) Danio rerio laminin gamma 1 (lamc1... 37 4.9
(Q9WTS5) RecName: Full=Teneurin-2; Short=Ten-2; AltName... 37 4.9
M33753_1(M33753|pid:none) D.melanogaster crumbs protein mRNA, co... 37 4.9
AE014298_418(AE014298|pid:none) Drosophila melanogaster chromoso... 37 4.9
(Q8MCN1) RecName: Full=Maturase K; AltName: Full=Intron maturase... 37 4.9
AE014298_423(AE014298|pid:none) Drosophila melanogaster chromoso... 37 4.9
AE014298_417(AE014298|pid:none) Drosophila melanogaster chromoso... 37 4.9
AE014298_420(AE014298|pid:none) Drosophila melanogaster chromoso... 37 4.9
AM234582_1(AM234582|pid:none) Phippsia algida subsp. concinna ch... 37 4.9
Z81110_2(Z81110|pid:none) Caenorhabditis elegans Cosmid T01D3, c... 37 4.9
(P10040) RecName: Full=Protein crumbs; AltName: Full=95F; Flags:... 37 4.9
(Q6ENX8) RecName: Full=Maturase K; AltName: Full=Intron maturase; 37 4.9
AL590997_33(AL590997|pid:none) Mouse DNA sequence from clone RP2... 37 4.9
(Q9MUZ1) RecName: Full=Maturase K; AltName: Full=Intron maturase... 37 4.9
AF522120_1(AF522120|pid:none) Trifolium cheranganiense maturase ... 37 4.9
AF508960_1(AF508960|pid:none) Xenopus laevis lipoprotein recepto... 37 4.9
(Q9MUX3) RecName: Full=Maturase K; AltName: Full=Intron maturase; 37 4.9
CP001131_1246(CP001131|pid:none) Anaeromyxobacter sp. K, complet... 37 4.9
AP006714_2(AP006714|pid:none) Saccharum officinarum chloroplast ... 37 4.9
AF312358_1(AF312358|pid:none) Triodia scariosa maturase (matK) g... 37 4.9
DQ004683_1(DQ004683|pid:none) Xenopus laevis granulin 2 mRNA, co... 37 4.9
AB208887_1(AB208887|pid:none) Homo sapiens mRNA for laminin, gam... 37 4.9
AF489911_1(AF489911|pid:none) Luziola leiocarpa maturase (matK) ... 37 4.9
AL138972_3(AL138972|pid:none) Drosophila melanogaster BAC clone ... 37 4.9
(Q85ZS9) RecName: Full=Maturase K; AltName: Full=Intron maturase... 37 4.9
AY386879_1(AY386879|pid:none) Onobrychis montana maturase-like p... 37 4.9
AF041835_1(AF041835|pid:none) Homo sapiens laminin gamma 3 chain... 37 4.9
BC068426_1(BC068426|pid:none) Danio rerio laminin, gamma 1, mRNA... 37 4.9
(Q9Y6N6) RecName: Full=Laminin subunit gamma-3; AltName: Full=La... 37 4.9
(Q5YJU1) RecName: Full=Maturase K; AltName: Full=Intron maturase... 37 4.9
AE014187_405(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 37 4.9
AF522114_1(AF522114|pid:none) Ononis natrix maturase (matK) gene... 37 4.9
T22945(T22945;T24295)hypothetical protein T01D3.1 - Caenorhabdit... 37 4.9
AE014298_419(AE014298|pid:none) Drosophila melanogaster chromoso... 37 4.9
AX647815_1(AX647815|pid:none) Sequence 2007 from Patent EP1270724. 37 4.9
BX324137_1(BX324137|pid:none) Zebrafish DNA sequence from clone ... 37 4.9
CR940353_318(CR940353|pid:none) Theileria annulata strain Ankara... 36 6.4
(Q04721) RecName: Full=Neurogenic locus notch homolog protein 2;... 36 6.4
AY145471_68(AY145471|pid:none) Rachiplusia ou multiple nucleopol... 36 6.4
(P36317) RecName: Full=Virion release protein; AltName: Full=Pro... 36 6.4
AY027889_1(AY027889|pid:none) Aedes aegypti vitellogenin recepto... 36 6.4
(Q85XY8) RecName: Full=Maturase K; AltName: Full=Intron maturase... 36 6.4
AY386892_1(AY386892|pid:none) Hedysarum boreale maturase-like pr... 36 6.4
AF164414_1(AF164414|pid:none) Chasmanthium laxum maturase (matK)... 36 6.4
(A5A6P5) RecName: Full=Keratin-associated protein 9-2; AltName: ... 36 6.4
EU424083_1(EU424083|pid:none) Wisteria frutescens voucher 141485... 36 6.4
AB154832_1(AB154832|pid:none) Halocynthia roretzi HrITGB2 mRNA f... 36 6.4
AK131904_1(AK131904|pid:none) Mus musculus adult male tongue cDN... 36 6.4
AF288092_42(AF288092|pid:none) Naegleria gruberi mitochondrial D... 36 6.4
DQ812528_1(DQ812528|pid:none) Spironucleus barkhanus isolate Sp1... 36 6.4
EF125736_1(EF125736|pid:none) Nyctotherus ovalis hypothetical pr... 36 6.4
X08030_1(X08030|pid:none) Chicken mRNA fragment for tenascin (cT... 36 6.4
AM746676_4349(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 36 6.4
AM234578_1(AM234578|pid:none) Glyceria nemoralis chloroplast mat... 36 6.4
(Q8K3K1) RecName: Full=Usherin; AltName: Full=Usher syndrome typ... 36 6.4
AF036687_2(AF036687|pid:none) Caenorhabditis elegans cosmid C08G... 36 6.4
AF164422_1(AF164422|pid:none) Echinochloa utilis maturase (matK)... 36 6.4
DQ790174_1(DQ790174|pid:none) Dulacia candida maturase K (matK) ... 36 6.4
AM234604_1(AM234604|pid:none) Hyalopoa lanatiflora chloroplast m... 36 6.4
BC089695_1(BC089695|pid:none) Xenopus tropicalis MGC107972 prote... 36 6.4
AJ720473_1(AJ720473|pid:none) Gallus gallus mRNA for hypothetica... 36 6.4
M88587_3(M88587|pid:none) Fowlpox virus major envelope antigen (... 36 6.4
BC154909_1(BC154909|pid:none) Xenopus tropicalis WNT inhibitory ... 36 6.4
T21011(T21011)hypothetical protein F16B12.2 - Caenorhabditis ele... 36 6.4
Z81064_2(Z81064|pid:none) Caenorhabditis elegans Cosmid F16B12, ... 36 6.4
EF584632_1(EF584632|pid:none) Thesidium fragile isolate 4102 mat... 36 6.4
(Q9MUY3) RecName: Full=Maturase K; AltName: Full=Intron maturase... 36 6.4
(Q8MCM9) RecName: Full=Maturase K; AltName: Full=Intron maturase... 36 6.4
T32497(T32497)hypothetical protein C08G9.2 - Caenorhabditis eleg... 36 6.4
CP001131_2828(CP001131|pid:none) Anaeromyxobacter sp. K, complet... 29 7.7
AP007166_484(AP007166|pid:none) Aspergillus oryzae RIB40 genomic... 36 8.4
(Q8MP30) RecName: Full=Uncharacterized histidine-rich protein DD... 36 8.4
AB078100_1(AB078100|pid:none) Hordeum erectifolium chloroplast m... 36 8.4
AL844509_613(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 36 8.4
DQ786907_1(DQ786907|pid:none) Dielsiochloa floribunda maturase K... 36 8.4
AF154117_1(AF154117|pid:none) Plasmodium falciparum surface prot... 36 8.4
EU025878_1(EU025878|pid:none) Astragalus casei maturase-like pro... 36 8.4
EF685996_1(EF685996|pid:none) Hedysarum vicioides maturase-like ... 36 8.4
DQ393788_1(DQ393788|pid:none) Xenopus tropicalis ADAM13 mRNA, co... 36 8.4
(Q9BYR0) RecName: Full=Keratin-associated protein 4-7; AltName: ... 36 8.4
DQ786912_1(DQ786912|pid:none) Festuca subverticillata maturase K... 36 8.4
AY792568_1(AY792568|pid:none) Ehrharta erecta maturase K (matK) ... 36 8.4
AF144577_1(AF144577|pid:none) Andropogon gerardii maturase (matK... 36 8.4
AM403063_1(AM403063|pid:none) Blattella germanica mRNA for lipop... 36 8.4
BC084953_1(BC084953|pid:none) Xenopus laevis X-Serrate-1 protein... 36 8.4
BC087344_1(BC087344|pid:none) Xenopus laevis cDNA clone MGC:9909... 36 8.4
(Q9MUW8) RecName: Full=Maturase K; AltName: Full=Intron maturase... 36 8.4
BC108458_1(BC108458|pid:none) Xenopus laevis hypothetical protei... 36 8.4
AF144602_1(AF144602|pid:none) Monodia stipoides maturase (matK) ... 36 8.4
AM234593_1(AM234593|pid:none) Poa annua chloroplast matK gene fo... 36 8.4
AF522106_1(AF522106|pid:none) Medicago radiata maturase (matK) g... 36 8.4
DQ790173_1(DQ790173|pid:none) Olax emirnensis maturase K (matK) ... 36 8.4
AB199644_1(AB199644|pid:none) Macaca fascicularis Corin mRNA for... 36 8.4
AC024830_9(AC024830|pid:none) Caenorhabditis elegans cosmid Y55F... 36 8.4
AF308601_1(AF308601|pid:none) Homo sapiens NOTCH 2 (N2) mRNA, co... 36 8.4
AF522159_1(AF522159|pid:none) Vicia lutea maturase (matK) gene, ... 36 8.4
AM403064_1(AM403064|pid:none) Blattella germanica mRNA for lipop... 36 8.4
A55035(A55035;S45034) cysteine-rich protein CRP1 - earthworm (En... 36 8.4
AK297675_1(AK297675|pid:none) Homo sapiens cDNA FLJ56535 complet... 36 8.4
EU025899_1(EU025899|pid:none) Astragalus coccineus maturase-like... 36 8.4
AK220196_1(AK220196|pid:none) Mus musculus mRNA for mKIAA4226 pr... 36 8.4
AX357059_1(AX357059|pid:none) Sequence 21 from Patent EP1175909.... 36 8.4
(Q8MCM8) RecName: Full=Maturase K; AltName: Full=Intron maturase... 36 8.4
(Q9W6F8) RecName: Full=Wnt inhibitory factor 1; Short=W... 36 8.4
CP000113_6085(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 36 8.4
BC146642_1(BC146642|pid:none) Danio rerio BMP binding endothelia... 36 8.4
AM055942_182(AM055942|pid:none) Toxoplasma gondii RH, genomic DN... 36 8.4
AF164392_1(AF164392|pid:none) Ehrharta longifolia maturase (matK... 36 8.4
CR940348_171(CR940348|pid:none) Theileria annulata strain Ankara... 36 8.4
AL034559_42(AL034559|pid:none) Plasmodium falciparum MAL3P7, com... 36 8.4
AF164418_1(AF164418|pid:none) Sorghum bicolor maturase (matK) ge... 36 8.4
AL773562_2(AL773562|pid:none) Pig DNA sequence from clone PigI-6... 30 9.3
JC2005(JC2005)integrin beta-5 chain - baboon 32 10.0

>(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;
Length = 719

Score = 630 bits (1625), Expect(3) = 0.0
Identities = 298/375 (79%), Positives = 308/375 (82%), Gaps = 4/375 (1%)
Frame = +1

Query: 1294 KLKKKCYSEAFSDPTCYELPCVNGTCTVNRLCDIPDKCIISTCIEGNGCSHLKKQCSDKD 1473
+++KKCYSEAFSDPTCYELPCVNGTCTVNRLCDIPDKCIISTCIEGNGCSHLKKQCSDKD
Sbjct: 350 EVEKKCYSEAFSDPTCYELPCVNGTCTVNRLCDIPDKCIISTCIEGNGCSHLKKQCSDKD 409

Query: 1474 YCTIDSCSSITGECFFDRVKDCQPCNETLCATDESNLCVRTECNPYDNSTCNEIKLVDCD 1653
YCTIDSCSSITGECFFDRVKDCQPCNETLCATDESNLCVRTECNPYDNSTCNEIKLVDCD
Sbjct: 410 YCTIDSCSSITGECFFDRVKDCQPCNETLCATDESNLCVRTECNPYDNSTCNEIKLVDCD 469

Query: 1654 DGNLCTNDICDPATGKCSNLPVVCEIKDACNK--TTM*YGHW*M--HCHR*L**Q*HMQ* 1821
DGNLCTNDICDPATGKCSNLPVVCEIKDACNK M G + +C+ ++
Sbjct: 470 DGNLCTNDICDPATGKCSNLPVVCEIKDACNKPQCDMVTGKCIVTDNCN-----DNNICS 524

Query: 1822 R*VAHWMAHVFTLKRHCDDGNKCTNDFCKVDIGCVHSNITCESSSVCMVASCDSNKGCIE 2001
K++CDDGNKCTNDFCKVDIGCVHSNITCESSSVCMVASCDSNKGCIE
Sbjct: 525 DDSCSLDGTCIHTKKNCDDGNKCTNDFCKVDIGCVHSNITCESSSVCMVASCDSNKGCIE 584

Query: 2002 SPIVCPSSAFCLVAQCDVGYGGCNQYDKVCIPDDPHCQYGICDNSTKKCTFKDFDPLPFR 2181
SPIVCPSSAFCLVAQCDVGYGGCNQYDKVCIPDDPHCQYGICDNSTKKCTFKDFDPLPFR
Sbjct: 585 SPIVCPSSAFCLVAQCDVGYGGCNQYDKVCIPDDPHCQYGICDNSTKKCTFKDFDPLPFR 644

Query: 2182 CQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYNHWMSLKNNQMATSSVNPLYEP 2361
CQS YNHWMSLKNNQMATSSVNPLYEP
Sbjct: 645 CQSVAVKAGVIGGAAIAGVVVGGAVALGLALFGAKAGYNHWMSLKNNQMATSSVNPLYEP 704

Query: 2362 SPHQGTNPLWEAPPT 2406
SPHQGTNPLWEAPPT
Sbjct: 705 SPHQGTNPLWEAPPT 719

Score = 364 bits (934), Expect(3) = 0.0
Identities = 163/163 (100%), Positives = 163/163 (100%)
Frame = +3

Query: 819 DDLVIDLGAPHTAESASVDLDKLGLIKGKSYNFDFFYCERHTTESYIHISTSIDLECKWK 998
DDLVIDLGAPHTAESASVDLDKLGLIKGKSYNFDFFYCERHTTESYIHISTSIDLECKWK
Sbjct: 192 DDLVIDLGAPHTAESASVDLDKLGLIKGKSYNFDFFYCERHTTESYIHISTSIDLECKWK 251

Query: 999 DYCGVCEGTGKCCDVSQCTGSLSPCGSWECPPPNIGTKEWKYNCIMKEPNCTLLDTMCTS 1178
DYCGVCEGTGKCCDVSQCTGSLSPCGSWECPPPNIGTKEWKYNCIMKEPNCTLLDTMCTS
Sbjct: 252 DYCGVCEGTGKCCDVSQCTGSLSPCGSWECPPPNIGTKEWKYNCIMKEPNCTLLDTMCTS 311

Query: 1179 YECNAISKTCEPRENVDPCAYTNSCEKKVCSEELGGCYEVEKK 1307
YECNAISKTCEPRENVDPCAYTNSCEKKVCSEELGGCYEVEKK
Sbjct: 312 YECNAISKTCEPRENVDPCAYTNSCEKKVCSEELGGCYEVEKK 354

Score = 332 bits (850), Expect(3) = 0.0
Identities = 151/151 (100%), Positives = 151/151 (100%)
Frame = +2

Query: 365 FEIKNNNTLVKGIVKSKLNHSDRSPVYCCGDNHAPSNDAYNFVVHNQSTFHSWFHDVPGV 544
FEIKNNNTLVKGIVKSKLNHSDRSPVYCCGDNHAPSNDAYNFVVHNQSTFHSWFHDVPGV
Sbjct: 41 FEIKNNNTLVKGIVKSKLNHSDRSPVYCCGDNHAPSNDAYNFVVHNQSTFHSWFHDVPGV 100

Query: 545 NVPVLSKLVFKQNQTDPRVFYYETPSFFPIDDLGFKDPNYKGKKINEPNYMSKDKFAHNY 724
NVPVLSKLVFKQNQTDPRVFYYETPSFFPIDDLGFKDPNYKGKKINEPNYMSKDKFAHNY
Sbjct: 101 NVPVLSKLVFKQNQTDPRVFYYETPSFFPIDDLGFKDPNYKGKKINEPNYMSKDKFAHNY 160

Query: 725 HFCLEMHASFFYIGGEEFNFKGDDDVWVFIN 817
HFCLEMHASFFYIGGEEFNFKGDDDVWVFIN
Sbjct: 161 HFCLEMHASFFYIGGEEFNFKGDDDVWVFIN 191

Score = 57.0 bits (136), Expect(2) = 4e-09
Identities = 45/156 (28%), Positives = 61/156 (39%), Gaps = 12/156 (7%)
Frame = +1

Query: 1276 NWEVVMKLKKKCYSEAFSDPTCYELPCVNGTCTVNRLCDIPDKCIISTCIEGNGCSHLKK 1455
N VV ++K C + P C V G C V C+ + C +C C H KK
Sbjct: 488 NLPVVCEIKDAC-----NKPQC---DMVTGKCIVTDNCNDNNICSDDSCSLDGTCIHTKK 539

Query: 1456 QCSDKDYCTIDSC--------SSITGE----CFFDRVKDCQPCNETLCATDESNLCVRTE 1599
C D + CT D C S+IT E C + C E+ S C+ +
Sbjct: 540 NCDDGNKCTNDFCKVDIGCVHSNITCESSSVCMVASCDSNKGCIESPIVCPSSAFCLVAQ 599

Query: 1600 CNPYDNSTCNEIKLVDCDDGNLCTNDICDPATGKCS 1707
C+ CN+ V D C ICD +T KC+
Sbjct: 600 CD-VGYGGCNQYDKVCIPDDPHCQYGICDNSTKKCT 634

Score = 29.6 bits (65), Expect(2) = 4e-09
Identities = 29/103 (28%), Positives = 37/103 (35%), Gaps = 1/103 (0%)
Frame = +3

Query: 984 ECKWKDYCGVCEGTGKCCDVSQCTGSLSPCGSWECPPPNIGTKEWKYNCIMKEPNCTLLD 1163
+C KDYC + C S TG +C P N + C E N
Sbjct: 404 QCSDKDYCTI----DSC---SSITGECFFDRVKDCQPCN------ETLCATDESN----- 445

Query: 1164 TMCTSYECNAI-SKTCEPRENVDPCAYTNSCEKKVCSEELGGC 1289
+C ECN + TC + VD C N C +C G C
Sbjct: 446 -LCVRTECNPYDNSTCNEIKLVD-CDDGNLCTNDICDPATGKC 486

Score = 42.7 bits (99), Expect = 0.069
Identities = 19/20 (95%), Positives = 19/20 (95%)
Frame = +1

Query: 307 DDKIFPVTIRDLSPMTNPVF 366
DDKIFPVTIRDLSPMTNP F
Sbjct: 22 DDKIFPVTIRDLSPMTNPDF 41

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 3,684,218,227
Number of extensions: 73142582
Number of successful extensions: 194946
Number of sequences better than 10.0: 461
Number of HSP's gapped: 192884
Number of HSP's successfully gapped: 833
Length of query: 891
Length of database: 1,051,180,864
Length adjustment: 138
Effective length of query: 753
Effective length of database: 604,535,722
Effective search space: 455215398666
Effective search space used: 455215398666
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.38 gvh: 0.80 alm: 0.32 top: 0.53 tms: 0.00 mit: 0.28 mip: 0.00
nuc: 0.93 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

80.0 %: nuclear
12.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: plasma membrane

>> prediction for Contig-U11582-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 5
SF (FL, S) 2
CH (FL, L) 34
CF (FL, S) 5
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0