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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U11545-1
Contig ID Contig-U11545-1
Contig update 2002.12.18
Contig sequence 
>Contig-U11545-1 (Contig-U11545-1Q) /CSM_Contig/Contig-U11545-1Q.Seq.d
ATATCGAGCAACATGCTACAGACTCTGTTAATAAAATGTTAATCGATATT
TCTAATCCAATTTCTAATGTTACCAAAAGATTTTTCATCAGTGACATCAT
AAACCAATAGGATACCCATAGCACCACAAAAAAATAAAAAAAATTATCTT
TCAGTGTTTTATATATTTGCATATTTTCGTTAAAATAACTAAATAAAAAA
AATATATAATATAATAATTATATAATAACATATAATAATAATTACACAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANCNNNNC
CCCCCNAAAAAAAAAANTTTTTTNAAAAAAA----------AAAAAAAAA
GAAAAAAAGAAAAAACATAAACACACAAAAAATAAAAATTATTTAAAGAA
AATAATAAGAAAAATAAAATAAAATGACATCTCGTTATGCAAAAAGACTT
CAAAAAGAATTATTAGATTTAAAAACAAATCCGCCACCCTGCATTTCAAT
TACTGAAGGTGATAATTTAGATAAATGGGTCATAGCTGTGGATGGAACAG
AGGGTTCAATTTATCAAGGAGAACATTTCAAATTACAATTTAAATTCTCT
TCTGGTTATCCATTAGATTCACCAGAGGTAATTTTCATTGGAACACCACC
AATTCACCCACATATTTATAGCAATGGTCACATTTGTTTATCGATTTTAT
ATGATAATTGGAGTCCAGCTTTAACTGTTTCATCAGTTTGTTTAAGTATT
TTGAGTATGTTAAGTGGTTGCACTGAAAAGATTCGTCCAACTGATGATTC
AAAATATGTTTCAAGAGTATTAAATAAAAGTCCAAAAGAAGTTAGATGGA
TGTTCCATGATGATACAGTATAAAAGAAAAAAAGAAAATAATAATAAAAA
AAAAAAAAAAAAAAAATGCAAACTAAAGAAAATAATTAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAATCAGTCAACAATACCGAGTAGTAACAAAATAAG
AATTTCTTAGTTTGCATTAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAA
AAGAAAAGAATATTGTAACGGTATCTTCACTCTGATATATATTGTATTTT
TATATATTATAATAAATATATTTTGTAAATCTTATACAAAAAAAAAAAAA
AATAAAAAAAAATAAAAAAAAAAAAATAAAAAAATAA
Gap gap included
Contig length 1177
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 1954960
End point 1955966
Strand (PLUS/MINUS) PLUS
Number of clones 10
Number of EST 15
Link to clone list U11545
List of clone(s) 

est1=SSI545F,1,227
est2=VHH150F,98,257
est3=VHH102F,113,257
est4=AHR422F,117,331
est5=CHN679F,117,305
est6=SSL313F,128,286
est7=AHR422Z,332,655
est8=SSM307Z,332,937
est9=VHH150Z,345,648
est10=VHH102Z,360,649
est11=SSI545Z,418,937
est12=SSI767F,515,944
est13=SSA879Z,714,926
est14=SSM846E,722,1128
est15=SSL313Z,929,1178
Translated Amino Acid sequence 
ieqhatdsvnkmlidisnpisnvtkrffisdiinq*dthsttkk*kklsfsvlyicifsl
k*lnkkni*YNNYIITYNNNYTKKKKKKKKKKKKKKKXXPPXKKXFFXK---

---KKKEKKKKHKHTKNKNYLKKIIRKIK*ndislckktskriirfknksatlhfny*r*
*fr*mghscgwnrgfnlsrrtfqiti*ilfwlsirftrgnfhwnttnsptyl*qwshlfi
dfi**lessfncfislfkyfeyvkwlh*kdssn**fkicfksik*kskrs*mdvp**ysi
kekkkiiikkkkkknan*rk*lkkkkkkkkknqstipssnkiris*falkkkkkkkkekk
eknivtvssl*yilyfyil**iyfvnliqkkkkikknkkkkikk*
Translated Amino Acid sequence (All Frames) 
Frame A:
issnmlqtllikc*sifliqflmlpkdfssvts*tnripiapqknkknylsvfyifayfr
*nn*ikkiyniiii**hiiiitqkkkkkkkkkkkkkkxxxppkkkxfxkk---

---KKKEKKKKHKHTKNKNYLKKIIRKIK*ndislckktskriirfknksatlhfny*r*
*fr*mghscgwnrgfnlsrrtfqiti*ilfwlsirftrgnfhwnttnsptyl*qwshlfi
dfi**lessfncfislfkyfeyvkwlh*kdssn**fkicfksik*kskrs*mdvp**ysi
kekkkiiikkkkkknan*rk*lkkkkkkkkknqstipssnkiris*falkkkkkkkkekk
eknivtvssl*yilyfyil**iyfvnliqkkkkikknkkkkikk*

Frame B:
yratcyrlc**nvnryf*snf*cyqkifhq*hhkpigyp*hhkkikkiifqcfiylhifv
kitk*kkyii**lynni***lhkkkkkkkkkkkkkkkxxxpxkkkxfxkk---

---kkkkkrknintqkikii*rk**ek*nkmtsryakrlqkelldlktnpppcisitegd
nldkwviavdgtegsiyqgehfklqfkfssgypldspevifigtppihphiysnghicls
ilydnwspaltvssvclsilsmlsgctekirptddskyvsrvlnkspkevrwmfhddtv*
kkkrk***kkkkkkmqtkenn*kkkkkkkkkisqqyrvvtk*eflslh*kkkkkkkkkkk
kril*rylhsdiycifiyynkyil*ilykkkkk*kkikkkk*kn

Frame C:
ieqhatdsvnkmlidisnpisnvtkrffisdiinq*dthsttkk*kklsfsvlyicifsl
k*lnkkni*YNNYIITYNNNYTKKKKKKKKKKKKKKKXXPPXKKXFFXK---

---kkrkkekt*thkk*klfkennkknkik*hlvmqkdfkkny*i*kqirhpafqllkvi
i*ings*lwmeqrvqfikenisnynlnsllvih*ihqr*fslehhqfthifiamvtfvyr
fymiigvql*lfhqfv*vf*vc*vvalkrfvqlmiqnmfqey*ikvqkkldgcsmmiqyk
rkkennnkkkkkkkcklkkiikkkkkkkkkksvnnte**qnknflvcikkkkkkkkrkkr
keycngiftliyivflyiiinifcksytkkkknkkk*kkknkki
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U11545-1 (Contig-U11545-1Q)
/CSM_Contig/Contig-U11545-1Q.Seq.d
         (1187 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U11545-1 (Contig-U11545-1Q) /CSM_Contig/Conti...   882  0.0
Contig-U12899-1 (Contig-U12899-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U05117-1 (Contig-U05117-1Q) /CSM_Contig/Conti...    38  0.021
Contig-U13926-1 (Contig-U13926-1Q) /CSM_Contig/Conti...    36  0.084
Contig-U12755-1 (Contig-U12755-1Q) /CSM_Contig/Conti...    36  0.084
Contig-U11881-1 (Contig-U11881-1Q) /CSM_Contig/Conti...    36  0.084
Contig-U12561-1 (Contig-U12561-1Q) /CSM_Contig/Conti...    34  0.33
Contig-U12479-1 (Contig-U12479-1Q) /CSM_Contig/Conti...    34  0.33
Contig-U12230-1 (Contig-U12230-1Q) /CSM_Contig/Conti...    34  0.33
Contig-U11707-1 (Contig-U11707-1Q) /CSM_Contig/Conti...    34  0.33

>Contig-U11545-1 (Contig-U11545-1Q) /CSM_Contig/Contig-U11545-1Q.Seq.d
          Length = 1187

 Score =  882 bits (445), Expect = 0.0
 Identities = 445/445 (100%)
 Strand = Plus / Plus

                                                                       
Query: 425 tgacatctcgttatgcaaaaagacttcaaaaagaattattagatttaaaaacaaatccgc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgacatctcgttatgcaaaaagacttcaaaaagaattattagatttaaaaacaaatccgc 484

                                                                       
Query: 485 caccctgcatttcaattactgaaggtgataatttagataaatgggtcatagctgtggatg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 caccctgcatttcaattactgaaggtgataatttagataaatgggtcatagctgtggatg 544

                                                                       
Query: 545 gaacagagggttcaatttatcaaggagaacatttcaaattacaatttaaattctcttctg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gaacagagggttcaatttatcaaggagaacatttcaaattacaatttaaattctcttctg 604

                                                                       
Query: 605 gttatccattagattcaccagaggtaattttcattggaacaccaccaattcacccacata 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gttatccattagattcaccagaggtaattttcattggaacaccaccaattcacccacata 664

                                                                       
Query: 665 tttatagcaatggtcacatttgtttatcgattttatatgataattggagtccagctttaa 724
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 tttatagcaatggtcacatttgtttatcgattttatatgataattggagtccagctttaa 724

                                                                       
Query: 725 ctgtttcatcagtttgtttaagtattttgagtatgttaagtggttgcactgaaaagattc 784
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ctgtttcatcagtttgtttaagtattttgagtatgttaagtggttgcactgaaaagattc 784

                                                                       
Query: 785 gtccaactgatgattcaaaatatgtttcaagagtattaaataaaagtccaaaagaagtta 844
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 gtccaactgatgattcaaaatatgtttcaagagtattaaataaaagtccaaaagaagtta 844

                                    
Query: 845 gatggatgttccatgatgatacagt 869
           |||||||||||||||||||||||||
Sbjct: 845 gatggatgttccatgatgatacagt 869


 Score =  252 bits (127), Expect = 8e-67
 Identities = 127/127 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatcgagcaacatgctacagactctgttaataaaatgttaatcgatatttctaatccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atatcgagcaacatgctacagactctgttaataaaatgttaatcgatatttctaatccaa 60

                                                                       
Query: 61  tttctaatgttaccaaaagatttttcatcagtgacatcataaaccaataggatacccata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tttctaatgttaccaaaagatttttcatcagtgacatcataaaccaataggatacccata 120

                  
Query: 121 gcaccac 127
           |||||||
Sbjct: 121 gcaccac 127


 Score =  168 bits (85), Expect = 9e-42
 Identities = 85/85 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1053 gaaaagaatattgtaacggtatcttcactctgatatatattgtatttttatatattataa 1112
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1053 gaaaagaatattgtaacggtatcttcactctgatatatattgtatttttatatattataa 1112

                                     
Query: 1113 taaatatattttgtaaatcttatac 1137
            |||||||||||||||||||||||||
Sbjct: 1113 taaatatattttgtaaatcttatac 1137


 Score =  101 bits (51), Expect = 2e-21
 Identities = 51/51 (100%)
 Strand = Plus / Plus

                                                               
Query: 968  tcagtcaacaataccgagtagtaacaaaataagaatttcttagtttgcatt 1018
            |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 968  tcagtcaacaataccgagtagtaacaaaataagaatttcttagtttgcatt 1018


 Score = 73.8 bits (37), Expect = 4e-13
 Identities = 37/37 (100%)
 Strand = Plus / Plus

                                                
Query: 144 ttatctttcagtgttttatatatttgcatattttcgt 180
           |||||||||||||||||||||||||||||||||||||
Sbjct: 144 ttatctttcagtgttttatatatttgcatattttcgt 180


>Contig-U12899-1 (Contig-U12899-1Q) /CSM_Contig/Contig-U12899-1Q.Seq.d
          Length = 3185

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 454 aaagaattattagatttaaaa 474
           |||||||||||||||||||||
Sbjct: 83  aaagaattattagatttaaaa 103


>Contig-U05117-1 (Contig-U05117-1Q) /CSM_Contig/Contig-U05117-1Q.Seq.d
          Length = 749

 Score = 38.2 bits (19), Expect = 0.021
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                       
Query: 1087 atatattgtatttttatatattataat 1113
            |||| ||| ||||||||||||||||||
Sbjct: 64   atatgttgcatttttatatattataat 38


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,676
Number of Sequences: 6905
Number of extensions: 10676
Number of successful extensions: 1182
Number of sequences better than 10.0: 139
length of query: 1187
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1171
effective length of database: 5,564,391
effective search space: 6515901861
effective search space used: 6515901861
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.25
Homology vs DNA 
Query= Contig-U11545-1 (Contig-U11545-1Q) /CSM_Contig/Contig-U11545-1Q.Seq.d
         (1187 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU039036) Dictyostelium discoideum slug cDNA, clone SSM307.      815   0.0    1
(C90450) Dictyostelium discoideum slug cDNA, clone SSI545.        807   0.0    1
(AU073932) Dictyostelium discoideum slug cDNA, clone SSI767.      476   e-129  1
(BJ357923) Dictyostelium discoideum cDNA clone:dda65l06, 3' ...   406   e-109  1
(BJ440879) Dictyostelium discoideum cDNA clone:ddv45c01, 3' ...   394   e-105  1
(BJ441045) Dictyostelium discoideum cDNA clone:ddv45c13, 3' ...   392   e-104  1
(AU073854) Dictyostelium discoideum slug cDNA, clone SSI545.      252   3e-78  2
(AU075060) Dictyostelium discoideum slug cDNA, clone SSM846.      278   5e-70  1
(M34457) Dictyostelium discoideum GTP-binding protein SAS1 g...   168   3e-37  1
(AU270190) Dictyostelium discoideum vegetative cDNA clone:VS...   168   3e-37  1
(AU051903) Dictyostelium discoideum slug cDNA, clone SSC355.      168   3e-37  1
(AU037978) Dictyostelium discoideum slug cDNA, clone SSH118.      168   3e-37  1
(C91481) Dictyostelium discoideum slug cDNA, clone SSK334.        168   3e-37  1
(C89776) Dictyostelium discoideum slug cDNA, clone SSG832.        168   3e-37  1
(BJ434188) Dictyostelium discoideum cDNA clone:ddv16l01, 3' ...   168   3e-37  1
(BJ415110) Dictyostelium discoideum cDNA clone:ddv21o12, 5' ...   168   3e-37  1
(BJ412726) Dictyostelium discoideum cDNA clone:ddv9j18, 5' e...   168   3e-37  1
(BJ402782) Dictyostelium discoideum cDNA clone:dds18c10, 3' ...   168   3e-37  1
(BJ397989) Dictyostelium discoideum cDNA clone:dds10d18, 3' ...   168   3e-37  1
(BJ347346) Dictyostelium discoideum cDNA clone:dda26h20, 3' ...   168   3e-37  1
(BJ328400) Dictyostelium discoideum cDNA clone:dda28e03, 5' ...   168   3e-37  1
(BJ327500) Dictyostelium discoideum cDNA clone:dda20m14, 5' ...   168   3e-37  1
(AU037253) Dictyostelium discoideum slug cDNA, clone SSB671.      167   1e-36  1
(M34456) Dictyostelium discoideum GTP-binding protein SAS2 m...   157   1e-33  1
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-...   157   1e-33  1
(AU072660) Dictyostelium discoideum slug cDNA, clone SSA481.      157   1e-33  1
(AU051871) Dictyostelium discoideum slug cDNA, clone SSB365.      157   1e-33  1
(C90225) Dictyostelium discoideum slug cDNA, clone SSI427.        157   1e-33  1
(C89939) Dictyostelium discoideum slug cDNA, clone SSG645.        157   1e-33  1
(AU051793) Dictyostelium discoideum slug cDNA, clone SSA350.      155   5e-33  1
(BJ430996) Dictyostelium discoideum cDNA clone:ddv9c14, 3' e...   155   5e-33  1
(BJ429793) Dictyostelium discoideum cDNA clone:ddv4l19, 3' e...   155   5e-33  1
(AU073644) Dictyostelium discoideum slug cDNA, clone SSH729.      153   2e-32  1
(AU051863) Dictyostelium discoideum slug cDNA, clone SSB339.      151   7e-32  1
(C93225) Dictyostelium discoideum slug cDNA, clone SSM846.        101   2e-27  3
(BJ343136) Dictyostelium discoideum cDNA clone:dda22k04, 3' ...    86   3e-27  2
(BJ345537) Dictyostelium discoideum cDNA clone:dda28c02, 3' ...   121   6e-23  1
(C90912) Dictyostelium discoideum slug cDNA, clone SSJ303.        113   2e-20  1
(AU038659) Dictyostelium discoideum slug cDNA, clone SSL313.       72   1e-18  3
(BJ431236) Dictyostelium discoideum cDNA clone:ddv13i11, 3' ...    84   1e-11  1
(ES394234) MUS09-J15.x1d-t SHGC-MUS Mytilus californianus cD...    80   2e-10  1
(AU074584) Dictyostelium discoideum slug cDNA, clone SSL313.       74   1e-08  1
(BJ422304) Dictyostelium discoideum cDNA clone:ddv45c13, 5' ...    74   1e-08  1
(BJ422146) Dictyostelium discoideum cDNA clone:ddv45c01, 5' ...    74   1e-08  1
(BJ369270) Dictyostelium discoideum cDNA clone:ddc49m20, 5' ...    74   1e-08  1
(BJ339389) Dictyostelium discoideum cDNA clone:dda65l06, 5' ...    74   1e-08  1
(BI513541) BB160013A10G12.5 Bee Brain Normalized Library, BB...    56   4e-06  2
(BI513984) BB160014A20B04.5 Bee Brain Normalized Library, BB...    56   4e-06  2
(DB742068) Apis mellifera head cDNA, RIKEN full-length enric...    56   4e-06  2
(DB738072) Apis mellifera head cDNA, RIKEN full-length enric...    56   4e-06  2
(AM880221) Mytilus edulis EST, 5' end sequence, clone mytilu...    54   1e-05  2
(EX436154) GQ04001.B7_M18 GQ040 - Shoot tip - Active growth ...    40   2e-04  2
(FD731357) WS03737.C21_D04 SS-B-N-22 Picea sitchensis cDNA c...    40   2e-04  2
(EX334180) GQ02907.B7_B01 GQ029 - Xylem scrapings - AT NITE ...    40   2e-04  2
(EX414702) GQ03619.B7_G17 GQ036 - Shoot tip - Active growth ...    40   2e-04  2
(EX438146) GQ04007.B7_C04 GQ040 - Shoot tip - Active growth ...    40   2e-04  2
(EX332992) GQ02905.B7_H20 GQ029 - Xylem scrapings - AT NITE ...    40   2e-04  2
(ES261717) WS0394.C21_A14 SS-B-24 Picea sitchensis cDNA clon...    40   2e-04  2
(EX422575) GQ03802.B7_O11 GQ038 - Stem - Active growth Picea...    40   2e-04  2
(EX367924) GQ03213.B7_K08 GQ032 - Shoot tip (Normalized libr...    40   2e-04  2
(DV998102) GQ027110.B3_B02 GQ099: Mixed spruce tissues Picea...    40   2e-04  2
(DR522449) WS02711.C21_M12 SS-IL-A-FL-14 Picea sitchensis cD...    40   2e-04  2
(DR495207) WS0297.BR_F24 SS-IB-A-FL-15 Picea sitchensis cDNA...    40   2e-04  2
(EX364404) GQ03208.B7_O19 GQ032 - Shoot tip (Normalized libr...    40   2e-04  2
(DR513687) WS02736.CR_J24 SS-IL-A-FL-14 Picea sitchensis cDN...    40   2e-04  2
(EX374250) GQ03229.B7_P03 GQ032 - Shoot tip (Normalized libr...    40   2e-04  2
(ES865201) WS02791.CR_O14 SS-IL-A-FL-14 Picea sitchensis cDN...    40   2e-04  2
(DR525712) WS0272.B21_O03 SS-IL-A-FL-14 Picea sitchensis cDN...    40   2e-04  2
(EX442696) GQ04106.B7_E14 GQ041 - Shoot tip - Dormant (Norma...    40   2e-04  2
(DR499265) WS02918.C21_B12 SS-IB-A-FL-15 Picea sitchensis cD...    40   2e-04  2
(EX428684) GQ03819.B7_G16 GQ038 - Stem - Active growth Picea...    40   2e-04  2
(EX366487) GQ03211.B7_L14 GQ032 - Shoot tip (Normalized libr...    40   2e-04  2
(EX428704) GQ03819.B7_H12 GQ038 - Stem - Active growth Picea...    40   2e-04  2
(DR551285) WS0322.B21_O20 WS-MC-N-A-20 Picea glauca cDNA clo...    40   2e-04  2
(DR502844) WS0297.B21_F24 SS-IB-A-FL-15 Picea sitchensis cDN...    40   2e-04  2
(EX412347) GQ03613.B7_A04 GQ036 - Shoot tip - Active growth ...    40   2e-04  2
(DV986896) GQ0202.B3_I14 GQ020: Clean ROOTS systems -Diurnal...    40   2e-04  2
(EX412428) GQ03613.B7_D14 GQ036 - Shoot tip - Active growth ...    40   2e-04  2
(DV986694) GQ0208.B3_K13 GQ020: Clean ROOTS systems -Diurnal...    40   2e-04  2
(DV989602) GQ0221.B7.1_G15 GQ022: ROOT XYLEM - mature trees ...    40   2e-04  2
(DV987276) GQ0206.B3_N12 GQ020: Clean ROOTS systems -Diurnal...    40   2e-04  2
(EX423081) GQ03804.B7_E17 GQ038 - Stem - Active growth Picea...    40   2e-04  2
(DV985980) GQ0206.B3_K18 GQ020: Clean ROOTS systems -Diurnal...    40   2e-04  2
(EX332167) GQ02904.B7_B14 GQ029 - Xylem scrapings - AT NITE ...    40   2e-04  2
(DV984587) GQ0207.B3_G22 GQ020: Clean ROOTS systems -Diurnal...    40   2e-04  2
(EX332517) GQ02904.SP6_B14 GQ029 - Xylem scrapings - AT NITE...    40   2e-04  2
(DR531844) WS02736.C21_J24 SS-IL-A-FL-14 Picea sitchensis cD...    40   2e-04  2
(DV974725) GQ00412.B3_G21 GQ004: Non-lignified secondary xyl...    40   2e-04  2
(DV975563) GQ0066.B3_E03 GQ006: Cambium and phloem from matu...    40   2e-04  2
(EL366554) CCES2655.b1_N16.ab1 CCE(LMS) endive Cichorium end...    52   2e-04  2
(EL367347) CCES3484.b1_G07.ab1 CCE(LMS) endive Cichorium end...    52   3e-04  2
(EL404213) CFFS2144.b1_O08.ab1 CFF(LMS) safflower Carthamus ...    54   3e-04  2
(DB752557) Apis mellifera head cDNA, RIKEN full-length enric...    56   0.003  1
(DB733843) Apis mellifera head cDNA, RIKEN full-length enric...    56   0.003  1
(AL385573) Medicago truncatula EST MtBC29C12F1 : T3 end of c...    56   0.003  1
(BI514137) BB160014A21B04.5 Bee Brain Normalized Library, BB...    56   0.003  1
(BI511451) BB160005B20B09.5 Bee Brain Normalized Library, BB...    56   0.003  1
(CF227935) PtaXM0006F1F0111 Poplar cDNA library from mature ...    52   0.004  2
(DW503889) GH_TMIRS_078_G08_F Cotton Normalized Library dT p...    52   0.004  2
(DW514805) GH_TMIRS_185_F03_F Cotton Normalized Library dT p...    52   0.004  2

>(AU039036) Dictyostelium discoideum slug cDNA, clone SSM307.
          Length = 606

 Score =  815 bits (411), Expect = 0.0
 Identities = 411/411 (100%)
 Strand = Plus / Plus


Query: 461 tattagatttaaaaacaaatccgccaccctgcatttcaattactgaaggtgataatttag 520
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 tattagatttaaaaacaaatccgccaccctgcatttcaattactgaaggtgataatttag 179


Query: 521 ataaatgggtcatagctgtggatggaacagagggttcaatttatcaaggagaacatttca 580
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 ataaatgggtcatagctgtggatggaacagagggttcaatttatcaaggagaacatttca 239


Query: 581 aattacaatttaaattctcttctggttatccattagattcaccagaggtaattttcattg 640
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 aattacaatttaaattctcttctggttatccattagattcaccagaggtaattttcattg 299


Query: 641 gaacaccaccaattcacccacatatttatagcaatggtcacatttgtttatcgattttat 700
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 gaacaccaccaattcacccacatatttatagcaatggtcacatttgtttatcgattttat 359


Query: 701 atgataattggagtccagctttaactgtttcatcagtttgtttaagtattttgagtatgt 760
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 atgataattggagtccagctttaactgtttcatcagtttgtttaagtattttgagtatgt 419


Query: 761 taagtggttgcactgaaaagattcgtccaactgatgattcaaaatatgtttcaagagtat 820
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 taagtggttgcactgaaaagattcgtccaactgatgattcaaaatatgtttcaagagtat 479


Query: 821 taaataaaagtccaaaagaagttagatggatgttccatgatgatacagtat 871
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 taaataaaagtccaaaagaagttagatggatgttccatgatgatacagtat 530

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 801,387,923
Number of extensions: 46940394
Number of successful extensions: 3634574
Number of sequences better than 10.0: 509
Length of query: 1187
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1163
Effective length of database: 97,308,875,965
Effective search space: 113170222747295
Effective search space used: 113170222747295
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.30
Homology vs Protein 
Query= Contig-U11545-1 (Contig-U11545-1Q) /CSM_Contig/Contig-U11545-1Q.Seq.d
         (1187 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55EY8) RecName: Full=Probable ubiquitin-conjugating enzyme E2 ...   313   1e-83
AM910995_350(AM910995|pid:none) Plasmodium knowlesi strain H chr...   184   5e-45
AK024050_1(AK024050|pid:none) Homo sapiens cDNA FLJ13988 fis, cl...   180   8e-44
AK001873_1(AK001873|pid:none) Homo sapiens cDNA FLJ11011 fis, cl...   180   1e-43
AK021735_1(AK021735|pid:none) Homo sapiens cDNA FLJ11673 fis, cl...   180   1e-43
BC116563_1(BC116563|pid:none) Danio rerio hypothetical protein F...   180   1e-43
(Q8VDW4) RecName: Full=Probable ubiquitin-conjugating enzyme E2 ...   180   1e-43
(Q96B02) RecName: Full=Probable ubiquitin-conjugating enzyme E2 ...   179   1e-43
BC139652_1(BC139652|pid:none) Danio rerio hypothetical protein F...   179   2e-43
AE013599_1204(AE013599|pid:none) Drosophila melanogaster chromos...   179   2e-43
EF464666_1(EF464666|pid:none) Gossypium hirsutum ubiquitin conju...   178   3e-43
(Q9FMM0) RecName: Full=Probable ubiquitin carrier protein E2 18;...   178   4e-43
(Q9FWT2) RecName: Full=Probable ubiquitin carrier protein E2 16;...   177   5e-43
EU952446_1(EU952446|pid:none) Zea mays clone 1281011 ubiquitin-c...   177   7e-43
AY398346_1(AY398346|pid:none) Danio rerio clone RK115A3B02 hypot...   177   8e-43
BT083804_1(BT083804|pid:none) Zea mays full-length cDNA clone ZM...   177   8e-43
EF081822_1(EF081822|pid:none) Picea sitchensis clone WS0285_O14 ...   176   1e-42
BT069514_1(BT069514|pid:none) Zea mays full-length cDNA clone ZM...   176   1e-42
BT038458_1(BT038458|pid:none) Zea mays full-length cDNA clone ZM...   175   2e-42
AC146720_22(AC146720|pid:none) Medicago truncatula clone mth2-17...   175   2e-42
BT074100_1(BT074100|pid:none) Oncorhynchus mykiss clone omyk-evo...   175   3e-42
AK015348_1(AK015348|pid:none) Mus musculus adult male testis cDN...   174   4e-42
AK077997_1(AK077997|pid:none) Mus musculus 14 days embryo thymus...   174   4e-42
EU959770_1(EU959770|pid:none) Zea mays clone 219933 ubiquitin-co...   174   6e-42
AC079736_3(AC079736|pid:none) Oryza sativa (japonica cultivar-gr...   174   6e-42
(Q4VBH4) RecName: Full=Probable ubiquitin-conjugating enzyme E2 ...   174   7e-42
BC095816_1(BC095816|pid:none) Danio rerio ubiquitin-conjugating ...   174   7e-42
EU964611_1(EU964611|pid:none) Zea mays clone 280334 ubiquitin-co...   173   9e-42
AJ131733_1(AJ131733|pid:none) Pseudotsuga menziesii mRNA for ubi...   172   3e-41
EF084391_1(EF084391|pid:none) Picea sitchensis clone WS0291_E21 ...   171   4e-41
(P42743) RecName: Full=Ubiquitin-conjugating enzyme 15;         ...   169   2e-40
S39483(S39483;S31971) ubiquitin-conjugating enzyme UBC2-1 - Arab...   169   2e-40
EF678391_1(EF678391|pid:none) Picea sitchensis clone WS02919_H05...   168   3e-40
BC010900_1(BC010900|pid:none) Homo sapiens ubiquitin-conjugating...   168   3e-40
EF145795_1(EF145795|pid:none) Populus trichocarpa clone WS0113_H...   168   4e-40
(O23239) RecName: Full=Probable ubiquitin carrier protein E2 17;...   165   3e-39
EU961486_1(EU961486|pid:none) Zea mays clone 235866 ubiquitin-co...   161   4e-38
EU954833_1(EU954833|pid:none) Zea mays clone 1486843 unknown mRNA.    155   2e-36
BT080495_1(BT080495|pid:none) Caligus clemensi clone ccle-evs-50...   154   8e-36
BT077286_1(BT077286|pid:none) Caligus rogercresseyi clone crog-e...   153   1e-35
CR382132_1309(CR382132|pid:none) Yarrowia lipolytica strain CLIB...   138   3e-31
AF028341_1(AF028341|pid:none) Arabidopsis thaliana ubiquitin-con...   138   3e-31
CR382132_1324(CR382132|pid:none) Yarrowia lipolytica chromosome ...   134   8e-30
AM270011_8(AM270011|pid:none) Aspergillus niger contig An02c0160...   114   7e-24
AP007159_211(AP007159|pid:none) Aspergillus oryzae RIB40 genomic...   114   7e-24
AL844509_442(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...   109   2e-22
AY814691_1(AY814691|pid:none) Schistosoma japonicum SJCHGC02747 ...   108   3e-22
FN357441_2(FN357441|pid:none) Schistosoma mansoni genome sequenc...   108   3e-22
AM910994_88(AM910994|pid:none) Plasmodium knowlesi strain H chro...   108   3e-22
CP000500_674(CP000500|pid:none) Pichia stipitis CBS 6054 chromos...   108   4e-22
AY811864_1(AY811864|pid:none) Schistosoma japonicum SJCHGC02746 ...   108   4e-22
AX971720_1(AX971720|pid:none) Sequence 2523 from Patent EP110480...   106   1e-21
BT074238_1(BT074238|pid:none) Oncorhynchus mykiss clone omyk-evo...   106   1e-21
BT057192_1(BT057192|pid:none) Salmo salar clone ssal-eve-549-287...   105   2e-21
BT057585_1(BT057585|pid:none) Salmo salar clone ssal-eve-534-384...   105   2e-21
AB105548_1(AB105548|pid:none) Xenopus laevis Xubc15 mRNA for ubi...   105   2e-21
BT056474_1(BT056474|pid:none) Salmo salar clone ssal-evd-521-050...   105   2e-21
BC077923_1(BC077923|pid:none) Xenopus laevis hypothetical LOC494...   105   3e-21
BT079919_1(BT079919|pid:none) Esox lucius clone eluc-evq-517-214...   105   3e-21
BC079134_1(BC079134|pid:none) Rattus norvegicus ubiquitin-conjug...   105   3e-21
BC099169_1(BC099169|pid:none) Rattus norvegicus ubiquitin-conjug...   105   3e-21
BT074069_1(BT074069|pid:none) Oncorhynchus mykiss clone omyk-evo...   105   3e-21
BC061394_1(BC061394|pid:none) Xenopus tropicalis ubiquitin-conju...   105   3e-21
(P52485) RecName: Full=Ubiquitin-conjugating enzyme E2-24 kDa;  ...   105   4e-21
AB172309_1(AB172309|pid:none) Macaca fascicularis brain cDNA clo...   104   7e-21
AY891186_1(AY891186|pid:none) Synthetic construct Homo sapiens c...   104   7e-21
BT045559_1(BT045559|pid:none) Salmo salar clone ssal-rgf-524-350...   104   7e-21
BT043519_1(BT043519|pid:none) Salmo salar clone HM4_1156 ubiquit...   104   7e-21
AY281323_1(AY281323|pid:none) Xenopus laevis ubiquitin-conjugati...   104   7e-21
BC042331_1(BC042331|pid:none) Danio rerio ubiquitin-conjugating ...   104   7e-21
BT075359_1(BT075359|pid:none) Osmerus mordax clone omor-eva-519-...   104   7e-21
(P52483) RecName: Full=Ubiquitin-conjugating enzyme E2 E3;      ...   104   7e-21
BT074151_1(BT074151|pid:none) Oncorhynchus mykiss clone omyk-evo...   103   2e-20
(Q96LR5) RecName: Full=Ubiquitin-conjugating enzyme E2 E2;      ...   102   3e-20
DQ972954_1(DQ972954|pid:none) Sus scrofa UB2E2 mRNA, complete cds.    102   3e-20
BC082838_1(BC082838|pid:none) Xenopus laevis hypothetical LOC494...   102   3e-20
(Q91W82) RecName: Full=Ubiquitin-conjugating enzyme E2 E2;      ...   102   3e-20
AM920427_1213(AM920427|pid:none) Penicillium chrysogenum Wiscons...   102   3e-20
DQ480743_1(DQ480743|pid:none) Rattus norvegicus clone ZX34 unkno...   102   3e-20
AY826156_1(AY826156|pid:none) Aedes albopictus clone AL_265 ubiq...   102   3e-20
AF136176_1(AF136176|pid:none) Homo sapiens ubiquitin-conjugating...   101   6e-20
BT074944_1(BT074944|pid:none) Osmerus mordax clone omor-rgc-511-...   101   6e-20
BT045620_1(BT045620|pid:none) Salmo salar clone ssal-rgf-526-297...   101   6e-20
AK295354_1(AK295354|pid:none) Homo sapiens cDNA FLJ52264 complet...    99   4e-19
DQ228115_1(DQ228115|pid:none) Proteomonas sulcata strain CCMP704...    98   5e-19
CP000881_158(CP000881|pid:none) Hemiselmis andersenii chromosome...    98   7e-19
AC087412_1(AC087412|pid:none) Oryza sativa chromosome 3 BAC OSJN...    98   7e-19
BT079496_1(BT079496|pid:none) Esox lucius clone eluc-evq-530-167...    98   7e-19
AB022024_1(AB022024|pid:none) Carassius auratus mRNA for cyclin-...    97   1e-18
EU972658_1(EU972658|pid:none) Zea mays clone 385382 unknown mRNA.      96   2e-18
EU952030_1(EU952030|pid:none) Zea mays clone 1065109 unknown mRNA.     96   2e-18
CP001326_415(CP001326|pid:none) Micromonas sp. RCC299 chromosome...    96   2e-18
BC109525_1(BC109525|pid:none) Bos taurus ubiquitin-conjugating e...    95   4e-18
BC127550_1(BC127550|pid:none) Xenopus tropicalis ubiquitin-conju...    94   1e-17
BT046424_1(BT046424|pid:none) Salmo salar clone ssal-evd-520-145...    93   2e-17
BT077327_1(BT077327|pid:none) Caligus rogercresseyi clone crog-e...    93   2e-17
(P56616) RecName: Full=Ubiquitin-conjugating enzyme E2 C;       ...    93   2e-17
(P51668) RecName: Full=Ubiquitin-conjugating enzyme E2 D1;      ...    93   2e-17
AX406018_1(AX406018|pid:none) Sequence 433 from Patent WO0222660.      93   2e-17
EF677016_1(EF677016|pid:none) Picea sitchensis clone WS02760_C17...    92   3e-17
AE017346_284(AE017346|pid:none) Cryptococcus neoformans var. neo...    92   3e-17
BT049795_1(BT049795|pid:none) Salmo salar clone ssal-eve-536-262...    92   3e-17
BC076728_1(BC076728|pid:none) Xenopus laevis ubiquitin-conjugati...    92   3e-17
BC142569_1(BC142569|pid:none) Xenopus laevis ubiquitin conjugati...    92   5e-17
CR940352_416(CR940352|pid:none) Theileria annulata strain Ankara...    91   6e-17
AL591127_9(AL591127|pid:none) Mouse DNA sequence from clone RP23...    91   6e-17
(Q54XS6) RecName: Full=Probable ubiquitin-conjugating enzyme E2 ...    91   6e-17
(Q9D1C1) RecName: Full=Ubiquitin-conjugating enzyme E2 C;       ...    91   6e-17
AY223405_1(AY223405|pid:none) Schistosoma japonicum clone ZZZ337...    91   8e-17
BT046784_1(BT046784|pid:none) Salmo salar clone ssal-eve-547-308...    91   8e-17
BT075389_1(BT075389|pid:none) Osmerus mordax clone omor-eva-513-...    91   8e-17
EU960465_1(EU960465|pid:none) Zea mays clone 225114 ubiquitin-co...    91   1e-16
(P43102) RecName: Full=Ubiquitin-conjugating enzyme E2 4;       ...    91   1e-16
EU957802_1(EU957802|pid:none) Zea mays clone 1623065 ubiquitin-c...    91   1e-16
AE014134_240(AE014134|pid:none) Drosophila melanogaster chromoso...    91   1e-16
(P35129) RecName: Full=Ubiquitin-conjugating enzyme E2 2;       ...    91   1e-16
BC055599_1(BC055599|pid:none) Danio rerio zgc:66323, mRNA (cDNA ...    91   1e-16
FN317049_1(FN317049|pid:none) Schistosoma japonicum isolate Anhu...    91   1e-16
BC047863_1(BC047863|pid:none) Danio rerio zgc:56340, mRNA (cDNA ...    91   1e-16
AM181595_1(AM181595|pid:none) Oesophagostomum dentatum mRNA for ...    91   1e-16
BC155782_1(BC155782|pid:none) Danio rerio zgc:56340, mRNA (cDNA ...    91   1e-16
BC059548_1(BC059548|pid:none) Danio rerio ubiquitin-conjugating ...    90   1e-16
AK059627_1(AK059627|pid:none) Oryza sativa Japonica Group cDNA c...    90   1e-16
FM992695_868(FM992695|pid:none) Candida dubliniensis CD36 chromo...    90   1e-16
AM920435_793(AM920435|pid:none) Penicillium chrysogenum Wisconsi...    90   1e-16
AB074411_1(AB074411|pid:none) Oryza sativa Japonica Group mRNA f...    90   1e-16
(P15731) RecName: Full=Ubiquitin-conjugating enzyme E2 4;       ...    90   2e-16
EU244369_1(EU244369|pid:none) Haliotis diversicolor clone HDr4CJ...    90   2e-16
BT078441_1(BT078441|pid:none) Lepeophtheirus salmonis Pacific fo...    90   2e-16
BT077825_1(BT077825|pid:none) Lepeophtheirus salmonis Pacific fo...    90   2e-16
EU972165_1(EU972165|pid:none) Zea mays clone 376667 ubiquitin-co...    89   2e-16
AM181594_1(AM181594|pid:none) Oesophagostomum dentatum mRNA for ...    89   2e-16
(P15732) RecName: Full=Ubiquitin-conjugating enzyme E2-16 kDa;  ...    89   2e-16
CU633438_434(CU633438|pid:none) Podospora anserina genomic DNA c...    89   2e-16
AF161722_1(AF161722|pid:none) Magnaporthe grisea ubiquitin-conju...    89   3e-16
FN392321_727(FN392321|pid:none) Pichia pastoris GS115 chromosome...    89   3e-16
(P25867) RecName: Full=Ubiquitin-conjugating enzyme E2-17 kDa;  ...    89   3e-16
AK152231_1(AK152231|pid:none) Mus musculus bone marrow macrophag...    89   3e-16
AM998844_1(AM998844|pid:none) Drosophila melanogaster CG2574 gen...    89   3e-16
(P61077) RecName: Full=Ubiquitin-conjugating enzyme E2 D3;      ...    89   3e-16
AK009276_1(AK009276|pid:none) Mus musculus adult male tongue cDN...    89   3e-16
AY231898_1(AY231898|pid:none) Drosophila yakuba clone yak-em_eff...    89   3e-16
AL672098_4(AL672098|pid:none) Mouse DNA sequence from clone RP23...    89   3e-16
AK095822_1(AK095822|pid:none) Homo sapiens cDNA FLJ38503 fis, cl...    89   3e-16
BC066917_1(BC066917|pid:none) Homo sapiens ubiquitin-conjugating...    89   3e-16
CR382130_616(CR382130|pid:none) Yarrowia lipolytica strain CLIB1...    89   4e-16
(O74196) RecName: Full=Ubiquitin-conjugating enzyme E2-16 kDa;  ...    89   4e-16
AE014298_1840(AE014298|pid:none) Drosophila melanogaster chromos...    89   4e-16
EU976228_1(EU976228|pid:none) Zea mays clone 688590 ubiquitin-co...    89   4e-16
(Q06AA9) RecName: Full=Ubiquitin-conjugating enzyme E2 D2;      ...    89   4e-16
FM245972_1(FM245972|pid:none) Drosophila melanogaster CG2574 gen...    89   4e-16
AM998840_1(AM998840|pid:none) Drosophila melanogaster CG2574 gen...    89   4e-16
I59365(I59365) ubiquitin conjugating enzyme - human  &L40146_1(L...    89   4e-16
DQ228113_4(DQ228113|pid:none) Hanusia phi strain CCMP325 18S rib...    89   4e-16
CR380951_194(CR380951|pid:none) Candida glabrata strain CBS138 c...    89   4e-16
(P46595) RecName: Full=Ubiquitin-conjugating enzyme E2 4;       ...    88   5e-16
AF001948_1(AF001948|pid:none) Pinus resinosa putative ubiquitin ...    88   5e-16
AP007167_66(AP007167|pid:none) Aspergillus oryzae RIB40 genomic ...    88   5e-16
BT082300_1(BT082300|pid:none) Anoplopoma fimbria clone afim-evh-...    88   5e-16
BC048896_1(BC048896|pid:none) Danio rerio zgc:55886, mRNA (cDNA ...    88   5e-16
EU963388_1(EU963388|pid:none) Zea mays clone 261750 ubiquitin-co...    88   5e-16
(O00762) RecName: Full=Ubiquitin-conjugating enzyme E2 C;       ...    88   5e-16
AY813067_1(AY813067|pid:none) Schistosoma japonicum SJCHGC00720 ...    88   5e-16
EF085158_1(EF085158|pid:none) Picea sitchensis clone WS0285_M23 ...    88   5e-16
CR954205_509(CR954205|pid:none) Ostreococcus tauri strain OTTH05...    88   5e-16
AY891303_1(AY891303|pid:none) Synthetic construct Homo sapiens c...    88   5e-16
BT063635_1(BT063635|pid:none) Zea mays full-length cDNA clone ZM...    88   5e-16
AK136186_1(AK136186|pid:none) Mus musculus in vitro fertilized e...    88   7e-16
BC048523_1(BC048523|pid:none) Mus musculus predicted gene, EG237...    88   7e-16
BT057031_1(BT057031|pid:none) Salmo salar clone ssal-evd-502-245...    87   9e-16
CR382125_546(CR382125|pid:none) Kluyveromyces lactis strain NRRL...    87   9e-16
(Q9SLE4) RecName: Full=Ubiquitin carrier protein E2 29;         ...    87   9e-16
(Q9FKT3) RecName: Full=Ubiquitin carrier protein E2 30;         ...    87   9e-16
BT057415_1(BT057415|pid:none) Salmo salar clone ssal-eve-568-290...    87   9e-16
BT079155_1(BT079155|pid:none) Esox lucius clone eluc-evq-525-194...    87   1e-15
BT056835_1(BT056835|pid:none) Salmo salar clone ssal-plnb-027-15...    87   1e-15
AM427228_1(AM427228|pid:none) Vitis vinifera contig VV78X183533....    87   2e-15
AC159432_15(AC159432|pid:none) Trypanosoma brucei chromosome 5 c...    87   2e-15
AC007915_13(AC007915|pid:none) Genomic sequence for Arabidopsis ...    87   2e-15
CP001323_218(CP001323|pid:none) Micromonas sp. RCC299 chromosome...    87   2e-15
GM966541_1(GM966541|pid:none) Sequence 1873 from Patent WO200814...    87   2e-15
AC148404_22(AC148404|pid:none) Medicago truncatula clone mth2-28...    87   2e-15
CR382131_195(CR382131|pid:none) Yarrowia lipolytica strain CLIB1...    86   2e-15
(Q3ZCF7) RecName: Full=Ubiquitin-conjugating enzyme E2 D3;      ...    86   2e-15
AP003446_10(AP003446|pid:none) Oryza sativa Japonica Group genom...    86   3e-15
GM966533_1(GM966533|pid:none) Sequence 1865 from Patent WO200814...    86   3e-15
AP008208_133(AP008208|pid:none) Oryza sativa (japonica cultivar-...    86   3e-15
AF034946_1(AF034946|pid:none) Zea mays ubiquitin conjugating enz...    86   3e-15
BT034735_1(BT034735|pid:none) Zea mays full-length cDNA clone ZM...    86   3e-15
AM494971_122(AM494971|pid:none) Leishmania braziliensis chromoso...    86   3e-15
BT034799_1(BT034799|pid:none) Zea mays full-length cDNA clone ZM...    85   4e-15
BT070302_1(BT070302|pid:none) Picea sitchensis clone WS02719_E19...    85   6e-15
BT070503_1(BT070503|pid:none) Picea sitchensis clone WS02732_O01...    84   7e-15
EF145004_1(EF145004|pid:none) Populus trichocarpa clone WS0111_H...    84   7e-15
AF424641_1(AF424641|pid:none) Phytophthora infestans clone MY-03...    84   7e-15
EU853458_1(EU853458|pid:none) Cucumis melo var. cantalupensis ub...    84   7e-15
AY736121_1(AY736121|pid:none) Triticum aestivum ubiquitin-conjug...    84   7e-15
BT070291_1(BT070291|pid:none) Picea sitchensis clone WS02718_B23...    84   7e-15
AF325019_1(AF325019|pid:none) Arabidopsis thaliana AT4g27960 (AT...    84   1e-14
AP007155_381(AP007155|pid:none) Aspergillus oryzae RIB40 genomic...    84   1e-14
AY082009_1(AY082009|pid:none) Gossypium thurberi ubiquitin-conju...    84   1e-14
AY082005_1(AY082005|pid:none) Gossypium hirsutum ubiquitin-conju...    84   1e-14
EF144962_1(EF144962|pid:none) Populus trichocarpa clone WS0111_C...    84   1e-14
EU586201_1(EU586201|pid:none) Malus x domestica cultivar Fuji ub...    84   1e-14
DQ027023_1(DQ027023|pid:none) Arabidopsis thaliana ubiquitinatin...    84   1e-14
(P35132) RecName: Full=SUMO-conjugating enzyme UBC9;          EC...    84   1e-14
CP000587_13(CP000587|pid:none) Ostreococcus lucimarinus CCE9901 ...    84   1e-14
BT053431_1(BT053431|pid:none) Medicago truncatula clone MTYFP_FQ...    84   1e-14
BT040054_1(BT040054|pid:none) Zea mays full-length cDNA clone ZM...    84   1e-14
AK105320_1(AK105320|pid:none) Oryza sativa Japonica Group cDNA c...    84   1e-14
AC007764_2(AC007764|pid:none) Genomic sequence for Arabidopsis t...    84   1e-14
(Q94F47) RecName: Full=Ubiquitin carrier protein E2 28;         ...    84   1e-14
DQ222513_1(DQ222513|pid:none) Solanum tuberosum clone 117E03 ubi...    84   1e-14
(P35135) RecName: Full=Ubiquitin-conjugating enzyme E2-17 kDa;  ...    84   1e-14
AC150706_14(AC150706|pid:none) Medicago truncatula clone mth2-13...    84   1e-14
AM464235_1(AM464235|pid:none) Vitis vinifera contig VV78X153506....    83   2e-14
EF147515_1(EF147515|pid:none) Populus trichocarpa clone WS0123_B...    83   2e-14
AY082004_1(AY082004|pid:none) Gossypium hirsutum ubiquitin-conju...    83   2e-14
AJ843120_1(AJ843120|pid:none) Plantago major mRNA for Ubiquitin-...    83   2e-14
EF146072_1(EF146072|pid:none) Populus trichocarpa clone WS0115_F...    83   2e-14
(P35131) RecName: Full=Ubiquitin-conjugating enzyme E2 8;       ...    83   2e-14
GM966539_1(GM966539|pid:none) Sequence 1871 from Patent WO200814...    83   2e-14
BT034602_1(BT034602|pid:none) Zea mays full-length cDNA clone ZM...    83   2e-14
EU593895_1(EU593895|pid:none) Brassica napus E2 ubiquitin-conjug...    83   2e-14
DQ887084_1(DQ887084|pid:none) Arachis hypogaea ubiquitin-conjuga...    83   2e-14
DQ144988_1(DQ144988|pid:none) Symbiodinium sp. C3 ubiquitin conj...    83   2e-14
EU586200_1(EU586200|pid:none) Malus x domestica cultivar Fuji ub...    83   2e-14
(P35133) RecName: Full=Ubiquitin-conjugating enzyme E2 10;      ...    83   2e-14
CR954214_340(CR954214|pid:none) Ostreococcus tauri strain OTTH05...    83   2e-14
DQ207855_1(DQ207855|pid:none) Solanum tuberosum clone 078A09 ubi...    83   2e-14
AY220735_1(AY220735|pid:none) Hordeum vulgare ubiquitin-conjugat...    83   2e-14
AY489135_1(AY489135|pid:none) Capsicum annuum ubiquitin-conjugat...    83   2e-14
(P35134) RecName: Full=Ubiquitin-conjugating enzyme E2 11;      ...    82   3e-14
CU928168_68(CU928168|pid:none) Kluyveromyces thermotolerans stra...    82   4e-14
BT046386_1(BT046386|pid:none) Salmo salar clone ssal-eve-564-281...    82   5e-14
AE017345_428(AE017345|pid:none) Cryptococcus neoformans var. neo...    82   5e-14
EU333281_1(EU333281|pid:none) Bursaphelenchus xylophilus ubiquit...    81   6e-14
AM270182_7(AM270182|pid:none) Aspergillus niger contig An08c0270...    81   6e-14
AB099076_1(AB099076|pid:none) Bos taurus mRNA for similar to pho...    81   6e-14
AB074412_1(AB074412|pid:none) Oryza sativa Japonica Group mRNA f...    81   6e-14
AF026506_1(AF026506|pid:none) Drosophila silvestris ubiquitin-co...    81   8e-14
(Q9LJD7) RecName: Full=Constitutive photomorphogenesis protein 1...    80   1e-13
AL050348_16(AL050348|pid:none) Human DNA sequence from clone RP3...    80   1e-13
AK317108_1(AK317108|pid:none) Arabidopsis thaliana AT3G13550 mRN...    80   1e-13
GM966535_1(GM966535|pid:none) Sequence 1867 from Patent WO200814...    80   2e-13
AY148222_1(AY148222|pid:none) Sus scrofa E2 ubiquitin-conjugatin...    80   2e-13
AY083611_1(AY083611|pid:none) Oryza sativa elicitor and UV light...    79   2e-13
EU951840_1(EU951840|pid:none) Zea mays clone 1061423 unknown mRNA.     79   2e-13
CR954205_263(CR954205|pid:none) Ostreococcus tauri strain OTTH05...    79   2e-13
AP003804_13(AP003804|pid:none) Oryza sativa Japonica Group genom...    79   3e-13
(Q9LJZ5) RecName: Full=Ubiquitin carrier protein E2 19;         ...    79   3e-13
EU595015_1(EU595015|pid:none) Myxobolus cerebralis clone 1J3 ubi...    79   3e-13
BT077910_1(BT077910|pid:none) Lepeophtheirus salmonis Pacific fo...    79   3e-13
AF461687_1(AF461687|pid:none) Pinus pinaster putative ubiquitin ...    79   4e-13
AE014296_727(AE014296|pid:none) Drosophila melanogaster chromoso...    78   5e-13
EF146216_1(EF146216|pid:none) Populus trichocarpa clone WS0116_E...    78   7e-13
EF145179_1(EF145179|pid:none) Populus trichocarpa clone WS01121_...    78   7e-13
(Q9NTT1) Putative ubiquitin-conjugating enzyme E2 D3-like protei...    78   7e-13
CU633899_608(CU633899|pid:none) Podospora anserina genomic DNA c...    78   7e-13
AM502242_152(AM502242|pid:none) Leishmania infantum chromosome 24.     78   7e-13
AM494961_221(AM494961|pid:none) Leishmania braziliensis chromoso...    78   7e-13
CR380959_331(CR380959|pid:none) Candida glabrata strain CBS138 c...    77   9e-13
(Q9C9Y7) RecName: Full=Probable ubiquitin-conjugating enzyme E2 ...    77   9e-13
EU431335_1(EU431335|pid:none) Marsupenaeus japonicus ubiquitin-c...    77   9e-13
AM920437_1408(AM920437|pid:none) Penicillium chrysogenum Wiscons...    77   9e-13
BT061792_1(BT061792|pid:none) Zea mays full-length cDNA clone ZM...    77   9e-13
(Q9C8X7) RecName: Full=Probable ubiquitin carrier protein E2 31;...    77   9e-13
CP000585_249(CP000585|pid:none) Ostreococcus lucimarinus CCE9901...    77   1e-12
AY814405_1(AY814405|pid:none) Schistosoma japonicum SJCHGC06418 ...    77   1e-12
AE014296_2283(AE014296|pid:none) Drosophila melanogaster chromos...    77   1e-12
AJ298327_1(AJ298327|pid:none) Platichthys flesus partial mRNA fo...    77   1e-12
AL590449_93(AL590449|pid:none) chromosome X of strain GB-M1 of E...    77   2e-12
DQ887086_1(DQ887086|pid:none) Arachis hypogaea ubiquitin-conjuga...    77   2e-12
(Q8L7T3) RecName: Full=Ubiquitin carrier protein E2 20;         ...    77   2e-12
AC159405_40(AC159405|pid:none) Trypanosoma brucei chromosome 8 c...    76   2e-12
CU928174_488(CU928174|pid:none) Zygosaccharomyces rouxii strain ...    76   2e-12
AE017345_305(AE017345|pid:none) Cryptococcus neoformans var. neo...    76   2e-12
FN357392_23(FN357392|pid:none) Schistosoma mansoni genome sequen...    76   2e-12
CU928176_185(CU928176|pid:none) Zygosaccharomyces rouxii strain ...    76   2e-12
DQ200366_1(DQ200366|pid:none) Solanum tuberosum clone 055E08 ubi...    76   2e-12
AK316720_1(AK316720|pid:none) Arabidopsis thaliana AT5G41700 mRN...    76   2e-12
EU963040_1(EU963040|pid:none) Zea mays clone 256705 ubiquitin-co...    76   2e-12
AY891220_1(AY891220|pid:none) Synthetic construct Homo sapiens c...    76   3e-12
CR382129_20(CR382129|pid:none) Yarrowia lipolytica strain CLIB12...    76   3e-12
AY632078_1(AY632078|pid:none) Clonorchis sinensis ubiquitin-conj...    76   3e-12
FN317000_1(FN317000|pid:none) Schistosoma japonicum isolate Anhu...    76   3e-12
EU284925_1(EU284925|pid:none) TSA: Elaeis guineensis EgEfMPOB001...    76   3e-12
(P63146) RecName: Full=Ubiquitin-conjugating enzyme E2 B;       ...    76   3e-12
DQ848992_1(DQ848992|pid:none) Trachemys scripta ubiquitin-conjug...    75   3e-12
AC159407_39(AC159407|pid:none) Trypanosoma brucei chromosome 8 c...    75   3e-12
(Q42540) RecName: Full=Ubiquitin-conjugating enzyme E2 7;       ...    75   3e-12
AC079279_3(AC079279|pid:none) Arabidopsis thaliana chromosome 1 ...    75   3e-12
CP001331_21(CP001331|pid:none) Micromonas sp. RCC299 chromosome ...    75   3e-12
AC117072_66(AC117072|pid:none) Dictyostelium discoideum chromoso...    75   3e-12
AK341528_1(AK341528|pid:none) Acyrthosiphon pisum ACYPI000705 mR...    75   5e-12
FN373925_1(FN373925|pid:none) Schistosoma mansoni genome sequenc...    75   5e-12
(P42747) RecName: Full=Ubiquitin-conjugating enzyme E2 14;      ...    75   5e-12
FN357441_5(FN357441|pid:none) Schistosoma mansoni genome sequenc...    75   6e-12
AC159413_39(AC159413|pid:none) Trypanosoma brucei chromosome 7 c...    75   6e-12
CR382123_762(CR382123|pid:none) Kluyveromyces lactis strain NRRL...    75   6e-12
BT082432_1(BT082432|pid:none) Anoplopoma fimbria clone afim-evh-...    75   6e-12
AL844509_547(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    75   6e-12
(P49459) RecName: Full=Ubiquitin-conjugating enzyme E2 A;       ...    75   6e-12
(O00103) RecName: Full=Ubiquitin-conjugating enzyme E2-20 kDa;  ...    74   8e-12
BT074286_1(BT074286|pid:none) Oncorhynchus mykiss clone omyk-evo...    74   8e-12
NRL(1AAK) Ubiquitin conjugating enzyme (EC 6.3.2.19) - Arabidopsis     74   8e-12
(P25865) RecName: Full=Ubiquitin-conjugating enzyme E2 1;       ...    74   8e-12
BT076385_1(BT076385|pid:none) Caligus rogercresseyi clone crog-e...    74   8e-12
AY223038_1(AY223038|pid:none) Schistosoma japonicum SJCHGC01675 ...    74   8e-12
BT081008_1(BT081008|pid:none) Caligus clemensi clone ccle-evs-50...    74   8e-12
S61417(S61417;S61418;S72311)ubiquitin-protein ligase (EC 6.3.2.1...    74   1e-11
FN357687_9(FN357687|pid:none) Schistosoma mansoni genome sequenc...    74   1e-11
EU963442_1(EU963442|pid:none) Zea mays clone 262526 ubiquitin-co...    74   1e-11
(P52490) RecName: Full=Ubiquitin-conjugating enzyme E2 13;      ...    74   1e-11
EF145757_1(EF145757|pid:none) Populus trichocarpa clone WS0113_D...    74   1e-11
DQ294271_1(DQ294271|pid:none) Solanum tuberosum clone 147C03 ubi...    74   1e-11
AK343174_1(AK343174|pid:none) Acyrthosiphon pisum ACYPI001299 mR...    74   1e-11
(Q58FS2) RecName: Full=Ubiquitin-conjugating enzyme E2 2;       ...    74   1e-11
EF145085_1(EF145085|pid:none) Populus trichocarpa clone WS01120_...    74   1e-11
AY048267_1(AY048267|pid:none) Arabidopsis thaliana AT5g62540/K19...    74   1e-11
DQ321735_1(DQ321735|pid:none) Schistosoma mansoni RAD6 mRNA, com...    74   1e-11
AB026055_1(AB026055|pid:none) Nicotiana tabacum Ntubc1 mRNA for ...    74   1e-11
AY291287_1(AY291287|pid:none) Bos taurus E2 ubiquitin conjugatin...    74   1e-11
BT083349_1(BT083349|pid:none) Anoplopoma fimbria clone afim-evh-...    74   1e-11
AK099038_1(AK099038|pid:none) Oryza sativa Japonica Group cDNA c...    74   1e-11
AK223064_1(AK223064|pid:none) Homo sapiens mRNA for ubiquitin-co...    74   1e-11
AJ843121_1(AJ843121|pid:none) Plantago major mRNA for Ubiquitin-...    73   2e-11
AE014296_2694(AE014296|pid:none) Drosophila melanogaster chromos...    73   2e-11
AY826157_1(AY826157|pid:none) Aedes albopictus clone AL_336 ubiq...    73   2e-11
AE014296_2692(AE014296|pid:none) Drosophila melanogaster chromos...    73   2e-11
AE014134_2590(AE014134|pid:none) Drosophila melanogaster chromos...    73   2e-11
EF082769_1(EF082769|pid:none) Picea sitchensis clone WS0277_E18 ...    73   2e-11
EF084843_1(EF084843|pid:none) Picea sitchensis clone WS0291_G02 ...    73   2e-11
EF144613_1(EF144613|pid:none) Populus trichocarpa clone WS01111_...    73   2e-11
BT077888_1(BT077888|pid:none) Lepeophtheirus salmonis Pacific fo...    73   2e-11
BT011473_1(BT011473|pid:none) Drosophila melanogaster RE15288 fu...    73   2e-11
DQ443216_1(DQ443216|pid:none) Bombyx mori ubiquitin conjugating ...    73   2e-11
(P52492) RecName: Full=Ubiquitin-conjugating enzyme E2-18 kDa;  ...    73   2e-11
AK342968_1(AK342968|pid:none) Acyrthosiphon pisum ACYPI001111 mR...    73   2e-11
CP001330_132(CP001330|pid:none) Micromonas sp. RCC299 chromosome...    73   2e-11
AC025726_13(AC025726|pid:none) Caenorhabditis elegans cosmid Y71...    73   2e-11
EU284823_1(EU284823|pid:none) TSA: Elaeis guineensis EgEfMPOB000...    73   2e-11
AY542992_1(AY542992|pid:none) Bigelowiella natans ubiquitin conj...    73   2e-11
AK343178_1(AK343178|pid:none) Acyrthosiphon pisum ACYPI006341 mR...    73   2e-11
CU638744_764(CU638744|pid:none) Podospora anserina genomic DNA c...    73   2e-11
BT071782_1(BT071782|pid:none) Picea sitchensis clone WS0454_N05 ...    73   2e-11
AC117265_6(AC117265|pid:none) Oryza sativa (japonica cultivar-gr...    73   2e-11
AM910993_147(AM910993|pid:none) Plasmodium knowlesi strain H chr...    73   2e-11
AK301675_1(AK301675|pid:none) Homo sapiens cDNA FLJ51703 complet...    72   3e-11
BT073899_1(BT073899|pid:none) Oncorhynchus mykiss clone omyk-evo...    72   3e-11
(Q553F3) RecName: Full=Ubiquitin-conjugating enzyme E2 2;       ...    72   3e-11
AF262934_1(AF262934|pid:none) Avicennia marina ubiquitin conjuga...    72   3e-11
FM992695_813(FM992695|pid:none) Candida dubliniensis CD36 chromo...    72   3e-11
BT063816_1(BT063816|pid:none) Zea mays full-length cDNA clone ZM...    72   3e-11
BT036396_1(BT036396|pid:none) Zea mays full-length cDNA clone ZM...    72   3e-11
AJ010592_62(AJ010592|pid:none) Guillardia theta DNA for complete...    72   3e-11
(P52478) RecName: Full=Ubiquitin-conjugating enzyme E2 1;       ...    72   3e-11
AK070524_1(AK070524|pid:none) Oryza sativa Japonica Group cDNA c...    72   3e-11
BT038770_1(BT038770|pid:none) Zea mays full-length cDNA clone ZM...    72   3e-11
EU952855_1(EU952855|pid:none) Zea mays clone 1291262 hypothetica...    72   4e-11
AB079798_1(AB079798|pid:none) Oryza sativa Japonica Group OsRad6...    72   4e-11
(P42746) RecName: Full=Ubiquitin-conjugating enzyme E2 3;       ...    72   4e-11
BT038939_1(BT038939|pid:none) Zea mays full-length cDNA clone ZM...    72   4e-11
BT076412_1(BT076412|pid:none) Caligus rogercresseyi clone crog-e...    72   4e-11
AL844518_5(AL844518|pid:none) Zebrafish DNA sequence from clone ...    72   4e-11
EU964992_1(EU964992|pid:none) Zea mays clone 283008 ubiquitin-co...    72   4e-11
FJ168552_19(FJ168552|pid:none) Bodo saltans clone fosmid 45A12, ...    72   4e-11
BT042345_1(BT042345|pid:none) Zea mays full-length cDNA clone ZM...    72   4e-11
EU952491_1(EU952491|pid:none) Zea mays clone 1282033 ubiquitin-c...    72   4e-11
AE017345_391(AE017345|pid:none) Cryptococcus neoformans var. neo...    72   4e-11
CP001323_325(CP001323|pid:none) Micromonas sp. RCC299 chromosome...    72   4e-11
CR380953_344(CR380953|pid:none) Candida glabrata strain CBS138 c...    72   4e-11
FM992692_56(FM992692|pid:none) Candida dubliniensis CD36 chromos...    72   4e-11
AK122067_1(AK122067|pid:none) Oryza sativa Japonica Group cDNA c...    72   4e-11
AK112003_1(AK112003|pid:none) Oryza sativa Japonica Group cDNA c...    72   4e-11
(Q86K32) RecName: Full=Probable ubiquitin-conjugating enzyme E2 ...    72   4e-11
U66493_1(U66493|pid:none) Metarhizium anisopliae ubiquitin conju...    72   5e-11
AP007166_113(AP007166|pid:none) Aspergillus oryzae RIB40 genomic...    72   5e-11
BT044917_1(BT044917|pid:none) Salmo salar clone ssal-rgf-507-097...    72   5e-11
BT078888_1(BT078888|pid:none) Esox lucius clone eluc-evq-513-210...    72   5e-11
AE016820_490(AE016820|pid:none) Ashbya gossypii (= Eremothecium ...    72   5e-11
(Q4PFA5) RecName: Full=Ubiquitin-conjugating enzyme E2 2;       ...    72   5e-11
BC102100_1(BC102100|pid:none) Bos taurus ubiquitin-conjugating e...    72   5e-11
CR940347_494(CR940347|pid:none) Theileria annulata strain Ankara...    72   5e-11
AY221464_1(AY221464|pid:none) Ovis aries UbcH5B mRNA, partial cds.     72   5e-11
EU247218_1(EU247218|pid:none) Lycosa singoriensis clone LSsin186...    72   5e-11
EU964354_1(EU964354|pid:none) Zea mays clone 278181 ubiquitin-co...    72   5e-11
BT043572_1(BT043572|pid:none) Salmo salar clone HM4_2469 ubiquit...    72   5e-11
CU928171_602(CU928171|pid:none) Kluyveromyces thermotolerans str...    72   5e-11
AM920437_2378(AM920437|pid:none) Penicillium chrysogenum Wiscons...    72   5e-11
DQ284494_1(DQ284494|pid:none) Solanum tuberosum clone 063D04 ubi...    71   7e-11
AY389716_1(AY389716|pid:none) Hyacinthus orientalis ubiquitin-co...    71   7e-11
AK341491_1(AK341491|pid:none) Acyrthosiphon pisum ACYPI008318 mR...    71   7e-11
AX406024_1(AX406024|pid:none) Sequence 439 from Patent WO0222660.      71   7e-11
AM270282_9(AM270282|pid:none) Aspergillus niger contig An12c0260...    71   7e-11
(Q8LGF7) RecName: Full=Probable ubiquitin carrier protein E2 21;...    71   7e-11
GM966557_1(GM966557|pid:none) Sequence 1889 from Patent WO200814...    71   7e-11
(Q29503) RecName: Full=Ubiquitin-conjugating enzyme E2 R2;      ...    71   7e-11
DQ241834_1(DQ241834|pid:none) Solanum tuberosum clone 180C02 ubi...    71   7e-11
BC075995_1(BC075995|pid:none) Danio rerio ubiquitin-conjugating ...    71   7e-11
U58652_1(U58652|pid:none) Oryctolagus cuniculus ubiquitin-conjug...    71   7e-11
BT081065_1(BT081065|pid:none) Caligus clemensi clone ccle-evs-51...    71   7e-11
BC124046_1(BC124046|pid:none) Xenopus tropicalis ubiquitin-conju...    71   7e-11
GM966098_1(GM966098|pid:none) Sequence 1430 from Patent WO200814...    71   7e-11
(Q6FR76) RecName: Full=Ubiquitin-conjugating enzyme E2 2;       ...    71   9e-11
CU640366_966(CU640366|pid:none) Podospora anserina genomic DNA c...    71   9e-11
DQ214034_1(DQ214034|pid:none) Taeniopygia guttata clone 0061P001...    71   9e-11
CR382125_338(CR382125|pid:none) Kluyveromyces lactis strain NRRL...    71   9e-11
BT073663_1(BT073663|pid:none) Oncorhynchus mykiss clone omyk-evn...    71   9e-11
BC053797_1(BC053797|pid:none) Xenopus laevis ubiquitin-conjugati...    71   9e-11
BC074529_1(BC074529|pid:none) Xenopus tropicalis cell division c...    71   9e-11
U15971_1(U15971|pid:none) Oryza sativa ubiquitin conjugating enz...    70   1e-10
CP000584_457(CP000584|pid:none) Ostreococcus lucimarinus CCE9901...    70   1e-10
CU928175_205(CU928175|pid:none) Zygosaccharomyces rouxii strain ...    70   1e-10
CR382128_835(CR382128|pid:none) Yarrowia lipolytica strain CLIB1...    70   1e-10
BT043660_1(BT043660|pid:none) Salmo salar clone HM5_1254 ubiquit...    70   1e-10
BT069771_1(BT069771|pid:none) Zea mays full-length cDNA clone ZM...    70   1e-10
CR940347_711(CR940347|pid:none) Theileria annulata strain Ankara...    70   1e-10
CR761899_1(CR761899|pid:none) Xenopus tropicalis finished cDNA, ...    70   1e-10
AK000426_1(AK000426|pid:none) Homo sapiens cDNA FLJ20419 fis, cl...    70   2e-10
BC044173_1(BC044173|pid:none) Danio rerio zgc:55452, mRNA (cDNA ...    70   2e-10
AF132074_1(AF132074|pid:none) Equus caballus RAD6 homolog (EHR6A...    70   2e-10
AY135219_1(AY135219|pid:none) Pavlova lutheri ubiquitin-conjugat...    70   2e-10
AF132075_1(AF132075|pid:none) Bos taurus RAD6 homolog (BHR6A) ge...    70   2e-10
BT081476_1(BT081476|pid:none) Rana catesbeiana clone rcat-evr-51...    70   2e-10
AC146747_17(AC146747|pid:none) Medicago truncatula clone mth2-14...    70   2e-10
AF419316_1(AF419316|pid:none) Bos taurus RAD6-like protein HR6A ...    70   2e-10
D78372_1(D78372|pid:none) Neurospora crassa DNA for mus-8, compl...    70   2e-10
CU638744_485(CU638744|pid:none) Podospora anserina genomic DNA c...    70   2e-10
AL513444_21(AL513444|pid:none) Neurospora crassa DNA linkage gro...    70   2e-10
CR382129_228(CR382129|pid:none) Yarrowia lipolytica strain CLIB1...    70   2e-10
EF585788_1(EF585788|pid:none) Sonneratia alba isolate Sonn199_1 ...    70   2e-10
(Q02159) RecName: Full=Ubiquitin-conjugating enzyme E2-18 kDa;  ...    70   2e-10
BT034037_1(BT034037|pid:none) Zea mays full-length cDNA clone ZM...    70   2e-10
(P52493) RecName: Full=Ubiquitin-conjugating enzyme E2 2;       ...    70   2e-10
DQ311426_1(DQ311426|pid:none) Bombyx mori ubiquitin conjugating ...    69   2e-10
(Q9FI61) RecName: Full=Ubiquitin carrier protein E2 27;         ...    69   2e-10
EF585789_1(EF585789|pid:none) Sonneratia caseolaris isolate Sonn...    69   2e-10
BC076537_1(BC076537|pid:none) Danio rerio zgc:91847, mRNA (cDNA ...    69   2e-10
AK059694_1(AK059694|pid:none) Oryza sativa Japonica Group cDNA c...    69   2e-10
DQ311425_1(DQ311425|pid:none) Bombyx mori ubiquitin conjugating ...    69   2e-10
EU966528_1(EU966528|pid:none) Zea mays clone 295025 ubiquitin-co...    69   2e-10
BT079170_1(BT079170|pid:none) Esox lucius clone eluc-evq-509-269...    69   2e-10
EU170471_1(EU170471|pid:none) Eucommia ulmoides ubiquitin conjug...    69   3e-10
(Q4WLA7) RecName: Full=Ubiquitin-conjugating enzyme E2 2;       ...    69   3e-10
(Q4R4I1) RecName: Full=Ubiquitin-conjugating enzyme E2 N;       ...    69   3e-10
DQ284472_1(DQ284472|pid:none) Solanum tuberosum clone 116D11 ubi...    69   3e-10
EF066642_1(EF066642|pid:none) Trichinella spiralis clone T3125 u...    69   3e-10
BT034341_1(BT034341|pid:none) Zea mays full-length cDNA clone ZM...    69   3e-10
(Q96UP5) RecName: Full=Ubiquitin-conjugating enzyme E2 2;       ...    69   3e-10
BT071650_1(BT071650|pid:none) Picea sitchensis clone WS0294_N24 ...    69   3e-10
EU399687_1(EU399687|pid:none) Salvia officinalis uqibuitin-prote...    69   3e-10
BT045267_1(BT045267|pid:none) Salmo salar clone ssal-rgf-517-009...    69   3e-10
EF576159_1(EF576159|pid:none) Oryza sativa (indica cultivar-grou...    69   3e-10
BC064184_1(BC064184|pid:none) Xenopus tropicalis ubiquitin-conju...    69   3e-10
(P25869) RecName: Full=Ubiquitin-conjugating enzyme E2;         ...    69   4e-10
AB105545_1(AB105545|pid:none) Xenopus laevis Xubc3 mRNA for ubiq...    69   4e-10
AM494941_87(AM494941|pid:none) Leishmania braziliensis chromosom...    68   6e-10
L00641_1(L00641|pid:none) Arabidopsis thaliana ubiquitin conjuga...    68   6e-10
BT074509_1(BT074509|pid:none) Osmerus mordax clone omor-eva-514-...    68   6e-10
BT075592_1(BT075592|pid:none) Osmerus mordax clone omor-eva-503-...    68   6e-10
CP000497_479(CP000497|pid:none) Pichia stipitis CBS 6054 chromos...    68   6e-10
(P0C8G4) RecName: Full=Ubiquitin-conjugating enzyme E2;         ...    68   6e-10
CU928181_242(CU928181|pid:none) Zygosaccharomyces rouxii strain ...    68   6e-10
(Q9Y818) RecName: Full=Ubiquitin-conjugating enzyme E2 15;      ...    68   6e-10
AK075703_1(AK075703|pid:none) Mus musculus adult male lung cDNA,...    68   7e-10
(P40984) RecName: Full=SUMO-conjugating enzyme ubc9;          EC...    68   7e-10
CR380951_188(CR380951|pid:none) Candida glabrata strain CBS138 c...    68   7e-10
BT058654_1(BT058654|pid:none) Salmo salar clone Contig2961 SUMO-...    68   7e-10
CU278516_1(CU278516|pid:none) Zebrafish DNA sequence from clone ...    68   7e-10
FN392319_40(FN392319|pid:none) Pichia pastoris GS115 chromosome ...    68   7e-10
AE016820_168(AE016820|pid:none) Ashbya gossypii (= Eremothecium ...    68   7e-10
AJ721068_1(AJ721068|pid:none) Gallus gallus mRNA for hypothetica...    68   7e-10
AJ277746_1(AJ277746|pid:none) Drosophila melanogaster mRNA for u...    68   7e-10
CR382124_377(CR382124|pid:none) Kluyveromyces lactis strain NRRL...    68   7e-10
AK005788_1(AK005788|pid:none) Mus musculus adult male testis cDN...    67   9e-10
AE017344_202(AE017344|pid:none) Cryptococcus neoformans var. neo...    67   9e-10
(Q6C093) RecName: Full=Ubiquitin-conjugating enzyme E2 2;       ...    67   9e-10
(P61088) RecName: Full=Ubiquitin-conjugating enzyme E2 N;       ...    67   9e-10
BC053141_1(BC053141|pid:none) Danio rerio ubiquitin-conjugating ...    67   9e-10
EF146699_1(EF146699|pid:none) Populus trichocarpa clone WS01212_...    67   9e-10
U67838_1(U67838|pid:none) Dictyostelium discoideum putative ubiq...    67   9e-10
(Q9EQX9) RecName: Full=Ubiquitin-conjugating enzyme E2 N;       ...    67   9e-10
AL139794_13(AL139794|pid:none) Leishmania major Friedlin chromos...    67   9e-10
AF132073_1(AF132073|pid:none) Sus scrofa RAD6 homolog (PHR6A) ge...    67   9e-10
BC044461_1(BC044461|pid:none) Danio rerio ubiquitin-conjugating ...    67   9e-10
FJ195328_1(FJ195328|pid:none) Larimichthys crocea ubiquitin-conj...    67   1e-09
CP000500_516(CP000500|pid:none) Pichia stipitis CBS 6054 chromos...    67   1e-09
(Q6BU36) RecName: Full=Ubiquitin-conjugating enzyme E2 2;       ...    67   1e-09
AK341282_1(AK341282|pid:none) Acyrthosiphon pisum ACYPI000069 mR...    67   1e-09
FN357511_14(FN357511|pid:none) Schistosoma mansoni genome sequen...    67   1e-09
(P14682) RecName: Full=Ubiquitin-conjugating enzyme E2-34 kDa;  ...    67   1e-09
AM055942_173(AM055942|pid:none) Toxoplasma gondii RH, genomic DN...    67   2e-09
FJ411013_1(FJ411013|pid:none) Paecilomyces sp. J18 ubiquitin con...    67   2e-09
AY892102_1(AY892102|pid:none) Synthetic construct Homo sapiens c...    67   2e-09
AB076054_1(AB076054|pid:none) Brachionus plicatilis ubc mRNA for...    67   2e-09
(Q4R5Y8) RecName: Full=Ubiquitin-conjugating enzyme E2 G1;      ...    67   2e-09
(P49427) RecName: Full=Ubiquitin-conjugating enzyme E2 R1;      ...    67   2e-09
BT077894_1(BT077894|pid:none) Lepeophtheirus salmonis Pacific fo...    67   2e-09
BT030506_1(BT030506|pid:none) Bos taurus ubiquitin-conjugating e...    67   2e-09

>(Q55EY8) RecName: Full=Probable ubiquitin-conjugating enzyme E2 W;
                   EC=6.3.2.19; AltName: Full=Ubiquitin-protein
           ligase W; AltName: Full=Ubiquitin carrier protein W;
          Length = 149

 Score =  313 bits (801), Expect = 1e-83
 Identities = 149/149 (100%), Positives = 149/149 (100%)
 Frame = +1

Query: 424 MTSRYAKRLQKELLDLKTNPPPCISITEGDNLDKWVIAVDGTEGSIYQGEHFKLQFKFSS 603
           MTSRYAKRLQKELLDLKTNPPPCISITEGDNLDKWVIAVDGTEGSIYQGEHFKLQFKFSS
Sbjct: 1   MTSRYAKRLQKELLDLKTNPPPCISITEGDNLDKWVIAVDGTEGSIYQGEHFKLQFKFSS 60

Query: 604 GYPLDSPEVIFIGTPPIHPHIYSNGHICLSILYDNWSPALTVSSVCLSILSMLSGCTEKI 783
           GYPLDSPEVIFIGTPPIHPHIYSNGHICLSILYDNWSPALTVSSVCLSILSMLSGCTEKI
Sbjct: 61  GYPLDSPEVIFIGTPPIHPHIYSNGHICLSILYDNWSPALTVSSVCLSILSMLSGCTEKI 120

Query: 784 RPTDDSKYVSRVLNKSPKEVRWMFHDDTV 870
           RPTDDSKYVSRVLNKSPKEVRWMFHDDTV
Sbjct: 121 RPTDDSKYVSRVLNKSPKEVRWMFHDDTV 149

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,222,909,475
Number of extensions: 20820309
Number of successful extensions: 55877
Number of sequences better than 10.0: 1798
Number of HSP's gapped: 54722
Number of HSP's successfully gapped: 1800
Length of query: 395
Length of database: 1,051,180,864
Length adjustment: 131
Effective length of query: 264
Effective length of database: 627,191,635
Effective search space: 165578591640
Effective search space used: 165578591640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.71  gvh: -0.12  alm: 0.84  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 1.46  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: nuclear
	 16.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for Contig-U11545-1 is nuc
VS (DIR, S) 0
VH (FL, L) 2
VF (FL, S) 0
AH (FL, L) 1
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 6
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0