Contig-U11543-1
Contig ID Contig-U11543-1
Contig update 2002.12.18
Contig sequence
>Contig-U11543-1 (Contig-U11543-1Q) /CSM_Contig/Contig-U11543-1Q.Seq.d
ATTTCTATCTATATTTTGGAATCATATAAAAATAATTTATAATATTATTA
TTTATAATAATTATTAATATTAATGTTATTTTAATTTCTATCTATATATT
GACATCATATAAAATAAATTCCATTTCATTTCAATTTTTTTTATATATAT
CATTTAATACTCCATATATTTTATTTTTACTTTTGTTTTATTTTTATTTT
TACTATTTTTTTTTTTCCATNCTTTCTTTTTTTTTTTTAAAAAAAAAANT
NTANNANNAAAA----------GTGATCCAAAGTATAAGGAATACTCTGA
TGGTGTAGTTGACGCATTGGCCGCTATGAAACCAACCATTAAAGGTTTGC
TACCAATTTATGTCTCTATGGATGCCCAAAGATTCTGCAATAGTCGTGTC
TCGGTTGGTGCAATGGGTGACTCCTACTATGAGTATCTCTTGAAAATGTG
GATCTATCACGACGGTCGTGAAGAGAGATACAGTACCCTATTCCAAGAAT
CTGCAGATGCAATCATTGAACATCTTTACAAAGTGTCGCCAAAGGGTGAT
GGGTATATCACAATTATGGACTACGACGTGCCAACCAACACACAAGAGCA
TCTAACTTGCTTTGCCGGCGGTATGTATGCATTGGCTGCTGTCTCAAATA
TTACTGGTGGTGATGTTGAAAAGGATAAACTCTATATGAAAGTTGGTGAA
GAGGTAACTAAAACTTGTACAAAGCTTTACTTAACCTCGGCCACCGGTCT
AGGCCCAGAGACCGCTTACTTCAACCAAAATGGTGAAATTGAATTCTCTG
GCCATTCAGCTGCCCCCCACTACATCCTTCGTCCTGAAACTGTTGAAAGT
TTATTTATTCTCTATCGTCTAACTGGTGATACCATCTATCAAGACTGGGC
TTGGCAAATCTTTGAATCTATAAACTCTGTCTGTAGAACTAACAATGGCT
TTGCTGGTGTTAAAGATGTCTCCAATATTCATACACAATTCGATGATAAT
CAACAAAGTTTCTTTATGGCTGAAACCTTAAAATATCTTTACCTAATCTT
CCAACCTTCTTCAGTGATTCCTCTTAATAAATATGTTTTTAATACTGAAG
CCCATCCTGTAAAAATTCAATATCAATAATATTAATAATATTAAAAATAT
TAATAATAACAATAATAACAAAAATAAAATAAAATTAAAATAAAATATCT
GGAACCCGTTTTCACATTTTTGTGTGAGTTGC

Gap gap included
Contig length 1222
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 2039619
End point 2040841
Strand (PLUS/MINUS) PLUS
Number of clones 7
Number of EST 9
Link to clone list U11543
List of clone(s)

est1=AHR377F,1,262
est2=CHQ655F,1,262
est3=CHR756F,11,262
est4=SLC313E,263,1223
est5=AFI117Z,464,1131
est6=CHR756Z,488,1210
est7=SLC501Z,661,1223
est8=SSA671Z,859,1215
est9=AHR377Z,944,1142
Translated Amino Acid sequence
fylyfgii*k*FIILLFIIIININVILISIYILTSYKINSISFQFFLYISFNTPYILFLL
LFYFYFYYFFFSXLSFFFLKKKXXXX---

---DPKYKEYSDGVVDALAAMKPTIKGLLPIYVSMDAQRFCNSRVSVGAMGDSYYEYLLK
MWIYHDGREERYSTLFQESADAIIEHLYKVSPKGDGYITIMDYDVPTNTQEHLTCFAGGM
YALAAVSNITGGDVEKDKLYMKVGEEVTKTCTKLYLTSATGLGPETAYFNQNGEIEFSGH
SAAPHYILRPETVESLFILYRLTGDTIYQDWAWQIFESINSVCRTNNGFAGVKDVSNIHT
QFDDNQQSFFMAETLKYLYLIFQPSSVIPLNKYVFNTEAHPVKIQYQ*y**y*ky***q*
*qk*nkikikylepvftflcel


Translated Amino Acid sequence (All Frames)
Frame A:
isiyilesyknnl*yyyl**llilmlf*flsiy*hhik*ipfhfnffyiyhlilhifyfy
fcfififtifffpxflfff*kkxxxxk---

---viqsirntlmv*lthwpl*nqplkvcyqfmslwmpkdsaivvsrlvqwvtptmsis*
kcgsittvvkrdtvpysknlqmqslniftkcrqrvmgisqlwtttcqpthksi*lalpav
cmhwllsqillvvmlkrinsi*klvkr*lklvqsft*prppv*aqrpltstkmvklnsla
iqlppttsfvlkllkvylfsiv*lvipsiktglgkslnl*tlsveltmallvlkmspifi
hnsmiinkvslwlkp*nift*ssnllq*fllinmflilkpil*kfninninnikninnnn
nnknkiklk*niwnpfshfcvsc

Frame B:
flsifwnhikiiyniiiynny*y*cyfnfylyidii*nkfhfisiffiyii*ysiyfift
fvlflfllffffhxfffffkkkxxxxk---

---*skv*gil*wcs*rigryetnh*rfatnlclygcpkilq*sclgwcng*lll*vsle
nvdlsrrs*reiqypipricrcnh*tslqsvakg*wvyhnyglrranqhtrasnllcrry
vcigcclkyyww*c*kg*tlyesw*rgn*nlykallnlghrsrprdrllqpkw*n*ilwp
fscpplhpss*nc*kfiyslssnw*yhlsrlglanl*iyklcl*n*qwlcwc*rclqysy
tir**stkflyg*nlkislpnlptffsdss**icf*y*spscknsisiiliilkiliiti
itkik*n*nkisgtrfhifv*v

Frame C:
fylyfgii*k*FIILLFIIIININVILISIYILTSYKINSISFQFFLYISFNTPYILFLL
LFYFYFYYFFFSXLSFFFLKKKXXXX---

---DPKYKEYSDGVVDALAAMKPTIKGLLPIYVSMDAQRFCNSRVSVGAMGDSYYEYLLK
MWIYHDGREERYSTLFQESADAIIEHLYKVSPKGDGYITIMDYDVPTNTQEHLTCFAGGM
YALAAVSNITGGDVEKDKLYMKVGEEVTKTCTKLYLTSATGLGPETAYFNQNGEIEFSGH
SAAPHYILRPETVESLFILYRLTGDTIYQDWAWQIFESINSVCRTNNGFAGVKDVSNIHT
QFDDNQQSFFMAETLKYLYLIFQPSSVIPLNKYVFNTEAHPVKIQYQ*y**y*ky***q*
*qk*nkikikylepvftflcel

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U11543-1 (Contig-U11543-1Q)
/CSM_Contig/Contig-U11543-1Q.Seq.d
(1232 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U11543-1 (Contig-U11543-1Q) /CSM_Contig/Conti... 1665 0.0
Contig-U08428-1 (Contig-U08428-1Q) /CSM_Contig/Conti... 58 2e-08
Contig-U14174-1 (Contig-U14174-1Q) /CSM_Contig/Conti... 38 0.022
Contig-U05695-1 (Contig-U05695-1Q) /CSM_Contig/Conti... 36 0.087
Contig-U14650-1 (Contig-U14650-1Q) /CSM_Contig/Conti... 34 0.34
Contig-U13295-1 (Contig-U13295-1Q) /CSM_Contig/Conti... 34 0.34
Contig-U12486-1 (Contig-U12486-1Q) /CSM_Contig/Conti... 34 0.34
Contig-U12447-1 (Contig-U12447-1Q) /CSM_Contig/Conti... 34 0.34
Contig-U11826-1 (Contig-U11826-1Q) /CSM_Contig/Conti... 34 0.34
Contig-U11657-1 (Contig-U11657-1Q) /CSM_Contig/Conti... 34 0.34

>Contig-U11543-1 (Contig-U11543-1Q) /CSM_Contig/Contig-U11543-1Q.Seq.d
Length = 1232

Score = 1665 bits (840), Expect = 0.0
Identities = 840/840 (100%)
Strand = Plus / Plus


Query: 273 gtgatccaaagtataaggaatactctgatggtgtagttgacgcattggccgctatgaaac 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 gtgatccaaagtataaggaatactctgatggtgtagttgacgcattggccgctatgaaac 332


Query: 333 caaccattaaaggtttgctaccaatttatgtctctatggatgcccaaagattctgcaata 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 caaccattaaaggtttgctaccaatttatgtctctatggatgcccaaagattctgcaata 392


Query: 393 gtcgtgtctcggttggtgcaatgggtgactcctactatgagtatctcttgaaaatgtgga 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 gtcgtgtctcggttggtgcaatgggtgactcctactatgagtatctcttgaaaatgtgga 452


Query: 453 tctatcacgacggtcgtgaagagagatacagtaccctattccaagaatctgcagatgcaa 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tctatcacgacggtcgtgaagagagatacagtaccctattccaagaatctgcagatgcaa 512


Query: 513 tcattgaacatctttacaaagtgtcgccaaagggtgatgggtatatcacaattatggact 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 tcattgaacatctttacaaagtgtcgccaaagggtgatgggtatatcacaattatggact 572


Query: 573 acgacgtgccaaccaacacacaagagcatctaacttgctttgccggcggtatgtatgcat 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 acgacgtgccaaccaacacacaagagcatctaacttgctttgccggcggtatgtatgcat 632


Query: 633 tggctgctgtctcaaatattactggtggtgatgttgaaaaggataaactctatatgaaag 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 tggctgctgtctcaaatattactggtggtgatgttgaaaaggataaactctatatgaaag 692


Query: 693 ttggtgaagaggtaactaaaacttgtacaaagctttacttaacctcggccaccggtctag 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 ttggtgaagaggtaactaaaacttgtacaaagctttacttaacctcggccaccggtctag 752


Query: 753 gcccagagaccgcttacttcaaccaaaatggtgaaattgaattctctggccattcagctg 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 gcccagagaccgcttacttcaaccaaaatggtgaaattgaattctctggccattcagctg 812


Query: 813 ccccccactacatccttcgtcctgaaactgttgaaagtttatttattctctatcgtctaa 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 ccccccactacatccttcgtcctgaaactgttgaaagtttatttattctctatcgtctaa 872


Query: 873 ctggtgataccatctatcaagactgggcttggcaaatctttgaatctataaactctgtct 932
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 ctggtgataccatctatcaagactgggcttggcaaatctttgaatctataaactctgtct 932


Query: 933 gtagaactaacaatggctttgctggtgttaaagatgtctccaatattcatacacaattcg 992
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 933 gtagaactaacaatggctttgctggtgttaaagatgtctccaatattcatacacaattcg 992


Query: 993 atgataatcaacaaagtttctttatggctgaaaccttaaaatatctttacctaatcttcc 1052
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 993 atgataatcaacaaagtttctttatggctgaaaccttaaaatatctttacctaatcttcc 1052


Query: 1053 aaccttcttcagtgattcctcttaataaatatgtttttaatactgaagcccatcctgtaa 1112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1053 aaccttcttcagtgattcctcttaataaatatgtttttaatactgaagcccatcctgtaa 1112


Score = 81.8 bits (41), Expect = 2e-15
Identities = 41/41 (100%)
Strand = Plus / Plus


Query: 88 ctatctatatattgacatcatataaaataaattccatttca 128
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 88 ctatctatatattgacatcatataaaataaattccatttca 128


Score = 69.9 bits (35), Expect = 6e-12
Identities = 35/35 (100%)
Strand = Plus / Plus


Query: 1198 tctggaacccgttttcacatttttgtgtgagttgc 1232
|||||||||||||||||||||||||||||||||||
Sbjct: 1198 tctggaacccgttttcacatttttgtgtgagttgc 1232


Score = 30.2 bits (15), Expect = 5.4
Identities = 24/27 (88%)
Strand = Plus / Plus


Query: 88 ctatctatatattgacatcatataaaa 114
|||||||||| ||| |||||||||||
Sbjct: 5 ctatctatattttggaatcatataaaa 31


>Contig-U08428-1 (Contig-U08428-1Q) /CSM_Contig/Contig-U08428-1Q.Seq.d
Length = 1020

Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus


Query: 273 gtgatccaaagtataaggaatactctgat 301
|||||||||||||||||||||||||||||
Sbjct: 177 gtgatccaaagtataaggaatactctgat 205


Score = 56.0 bits (28), Expect = 9e-08
Identities = 67/80 (83%)
Strand = Plus / Plus


Query: 992 gatgataatcaacaaagtttctttatggctgaaaccttaaaatatctttacctaatcttc 1051
||||||| |||| |||||||||||||| | |||| |||||||||||||| || |||
Sbjct: 894 gatgatactcaagaaagtttctttatgtcataaactttaaaatatctttatttatcattc 953


Query: 1052 caaccttcttcagtgattcc 1071
|||||||| ||||| |||||
Sbjct: 954 caaccttcgtcagttattcc 973


Score = 48.1 bits (24), Expect = 2e-05
Identities = 48/56 (85%)
Strand = Plus / Plus


Query: 497 gaatctgcagatgcaatcattgaacatctttacaaagtgtcgccaaagggtgatgg 552
|||||||| ||| | |||||||||||| | |||||||| || ||||| ||||||||
Sbjct: 402 gaatctgctgattctatcattgaacatttgtacaaagtttccccaaaaggtgatgg 457


Score = 46.1 bits (23), Expect = 9e-05
Identities = 71/87 (81%)
Strand = Plus / Plus


Query: 830 cgtcctgaaactgttgaaagtttatttattctctatcgtctaactggtgataccatctat 889
|||||||||||||||||| ||||| ||| | |||||| |||| ||||||| | |||
Sbjct: 735 cgtcctgaaactgttgaatcattattcattttatatcgtttaacaggtgatattaaatat 794


Query: 890 caagactgggcttggcaaatctttgaa 916
||||| ||| | ||| |||||||||||
Sbjct: 795 caagaatggtcatggaaaatctttgaa 821


Score = 38.2 bits (19), Expect = 0.022
Identities = 31/35 (88%)
Strand = Plus / Plus


Query: 683 tatatgaaagttggtgaagaggtaactaaaacttg 717
|||||| ||||||||||| | |||||||||||||
Sbjct: 585 tatatggaagttggtgaaatgataactaaaacttg 619


>Contig-U14174-1 (Contig-U14174-1Q) /CSM_Contig/Contig-U14174-1Q.Seq.d
Length = 1272

Score = 38.2 bits (19), Expect = 0.022
Identities = 19/19 (100%)
Strand = Plus / Minus


Query: 1047 tcttccaaccttcttcagt 1065
|||||||||||||||||||
Sbjct: 1162 tcttccaaccttcttcagt 1144


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7177
Number of Sequences: 6905
Number of extensions: 7177
Number of successful extensions: 694
Number of sequences better than 10.0: 68
length of query: 1232
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1216
effective length of database: 5,564,391
effective search space: 6766299456
effective search space used: 6766299456
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.25
Homology vs DNA
Query= Contig-U11543-1 (Contig-U11543-1Q) /CSM_Contig/Contig-U11543-1Q.Seq.d
(1232 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU060936) Dictyostelium discoideum slug cDNA, clone SLC313. 1503 0.0 1
(BJ343727) Dictyostelium discoideum cDNA clone:dda17a05, 3' ... 1245 0.0 1
(BJ386282) Dictyostelium discoideum cDNA clone:ddc57p13, 3' ... 1183 0.0 1
(AU034241) Dictyostelium discoideum slug cDNA, clone SLC313. 942 0.0 2
(AU034574) Dictyostelium discoideum slug cDNA, clone SLC501. 864 0.0 2
(BJ358136) Dictyostelium discoideum cDNA clone:dda65j19, 3' ... 285 2e-72 1
(BJ402573) Dictyostelium discoideum cDNA clone:dds17j09, 3' ... 48 5e-23 6
(BJ402574) Dictyostelium discoideum cDNA clone:dds17j10, 3' ... 52 2e-22 5
(C83928) Dictyostelium discoideum slug cDNA, clone SSA671. 52 3e-07 2
(BJ389066) Dictyostelium discoideum cDNA clone:dds17j09, 5' ... 56 8e-07 2
(BJ402742) Dictyostelium discoideum cDNA clone:dds17j21, 3' ... 44 2e-06 3
(DV498091) Sa_em0_07n05_5prime Dogfish Shark Embryo-derived ... 40 0.011 2
(ES391365) MUS11-M09.x1d-t SHGC-MUS Mytilus californianus cD... 50 0.20 1
(DT726269) Le_lv0_62c07_SP6 Little Skate Liver, Normalized L... 50 0.20 1
(DT726053) Le_lv0_59h04_SP6 Little Skate Liver, Normalized L... 50 0.20 1
(DT726032) Le_lv0_59f06_SP6 Little Skate Liver, Normalized L... 50 0.20 1
(FF599829) Le_emcl1_12D11_M13Reverse Little Skate (Leucoraja... 50 0.20 1
(DT245444) JGI_CAAU721.fwd CAAU Pimephales promelas brain 7-... 38 0.57 2
(EK063242) 1092960100210 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.80 1
(ES237774) CF_WO0_59h04_SP6 Copepod Whole Organism, Normaliz... 48 0.80 1
(EE002203) ROE00007696 Rhizopus oryzae Company Rhizopus oryz... 38 2.2 2
(EE002164) ROE00007600 Rhizopus oryzae Company Rhizopus oryz... 38 2.2 2
(AC197160) Pan troglodytes BAC clone CH251-322J19 from chrom... 46 3.1 1
(AC188675) Pan troglodytes BAC clone CH251-382M6 from chromo... 46 3.1 1
(AC146191) Pan troglodytes BAC clone RP43-25E3 from chromoso... 46 3.1 1
(AY052369) Homo sapiens PP2A B56 gamma gene, complete cds, a... 46 3.1 1
(AL356120) Human DNA sequence from clone RP11-365K22 on chro... 46 3.1 1
(AL137779) Human chromosome 14 DNA sequence BAC C-2017C7 of ... 46 3.1 1
(AC022281) Homo sapiens chromosome 10 clone RP11-10E13, WORK... 46 3.1 1
(EJ507612) 1095407012794 Global-Ocean-Sampling_GS-28-01-01-1... 46 3.1 1
(DY360525) ZO__Ed0006C20.r ZO__Ed Zingiber officinale cDNA c... 46 3.1 1
(DY360524) ZO__Ed0006C20.f ZO__Ed Zingiber officinale cDNA c... 46 3.1 1
(DT986686) CLJ226-F06.x1d-t SHGC-CLJ Gasterosteus aculeatus ... 46 3.1 1
(CP000061) Aster yellows witches'-broom phytoplasma AYWB, co... 46 3.1 1
(AP006628) Onion yellows phytoplasma OY-M DNA, complete genome. 46 3.1 1
(EX269728) 1449984_5_D06_029 PY06 Carica papaya cDNA, mRNA s... 36 4.2 2
(AY167027) Candida albicans alpha1,2-mannosidase (Mns1) gene... 44 6.4 2
(ES807984) UFL_625_12 Cotton fiber 0-10 day post anthesis Go... 34 7.7 2
(ES851478) UFL_680_04 Cotton fiber 0-10 day post anthesis Go... 34 7.7 2
(ES844882) UFL_115_61 Cotton fiber 0-10 day post anthesis Go... 34 7.8 2
(ES799341) UFL_610_29 Cotton fiber 0-10 day post anthesis Go... 34 7.9 2
(DT462770) GH_CHX12J09.f GH_CHX Gossypium hirsutum cDNA clon... 34 7.9 2
(ES845832) UFL_126_84 Cotton fiber 0-10 day post anthesis Go... 34 7.9 2
(DT462856) GH_CHX12L07.f GH_CHX Gossypium hirsutum cDNA clon... 34 7.9 2
(DT462857) GH_CHX12L07.r GH_CHX Gossypium hirsutum cDNA clon... 34 7.9 2
(DT467192) GH_CHX20A10.f GH_CHX Gossypium hirsutum cDNA clon... 34 7.9 2
(DT467193) GH_CHX20A10.r GH_CHX Gossypium hirsutum cDNA clon... 34 7.9 2
(BQ401452) GA__Ed0003G10f Gossypium arboreum 7-10 dpa fiber ... 34 8.0 2
(ES837411) UFL_031_86 Cotton fiber 0-10 day post anthesis Go... 34 8.0 2
(DN761594) G.hir-stem 4101 PCR amplified cotton stem cDNA Go... 34 8.1 2
(DN761506) G.hir-stem 4013 PCR amplified cotton stem cDNA Go... 34 8.1 2
(DR458570) CM067B06 Cotton Lambda Zap Express Library Gossyp... 34 8.1 2
(DW516004) GH_TMIRS_197_B10_F Cotton Normalized Library dT p... 34 8.3 2
(AC191599) Medicago truncatula chromosome 2 BAC clone mth2-1... 40 9.4 4

>(AU060936) Dictyostelium discoideum slug cDNA, clone SLC313.
Length = 759

Score = 1503 bits (758), Expect = 0.0
Identities = 758/758 (100%)
Strand = Plus / Plus


Query: 274 tgatccaaagtataaggaatactctgatggtgtagttgacgcattggccgctatgaaacc 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tgatccaaagtataaggaatactctgatggtgtagttgacgcattggccgctatgaaacc 61


Query: 334 aaccattaaaggtttgctaccaatttatgtctctatggatgcccaaagattctgcaatag 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 aaccattaaaggtttgctaccaatttatgtctctatggatgcccaaagattctgcaatag 121


Query: 394 tcgtgtctcggttggtgcaatgggtgactcctactatgagtatctcttgaaaatgtggat 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 tcgtgtctcggttggtgcaatgggtgactcctactatgagtatctcttgaaaatgtggat 181


Query: 454 ctatcacgacggtcgtgaagagagatacagtaccctattccaagaatctgcagatgcaat 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 ctatcacgacggtcgtgaagagagatacagtaccctattccaagaatctgcagatgcaat 241


Query: 514 cattgaacatctttacaaagtgtcgccaaagggtgatgggtatatcacaattatggacta 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 cattgaacatctttacaaagtgtcgccaaagggtgatgggtatatcacaattatggacta 301


Query: 574 cgacgtgccaaccaacacacaagagcatctaacttgctttgccggcggtatgtatgcatt 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 cgacgtgccaaccaacacacaagagcatctaacttgctttgccggcggtatgtatgcatt 361


Query: 634 ggctgctgtctcaaatattactggtggtgatgttgaaaaggataaactctatatgaaagt 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ggctgctgtctcaaatattactggtggtgatgttgaaaaggataaactctatatgaaagt 421


Query: 694 tggtgaagaggtaactaaaacttgtacaaagctttacttaacctcggccaccggtctagg 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tggtgaagaggtaactaaaacttgtacaaagctttacttaacctcggccaccggtctagg 481


Query: 754 cccagagaccgcttacttcaaccaaaatggtgaaattgaattctctggccattcagctgc 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 cccagagaccgcttacttcaaccaaaatggtgaaattgaattctctggccattcagctgc 541


Query: 814 cccccactacatccttcgtcctgaaactgttgaaagtttatttattctctatcgtctaac 873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 cccccactacatccttcgtcctgaaactgttgaaagtttatttattctctatcgtctaac 601


Query: 874 tggtgataccatctatcaagactgggcttggcaaatctttgaatctataaactctgtctg 933
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 tggtgataccatctatcaagactgggcttggcaaatctttgaatctataaactctgtctg 661


Query: 934 tagaactaacaatggctttgctggtgttaaagatgtctccaatattcatacacaattcga 993
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 tagaactaacaatggctttgctggtgttaaagatgtctccaatattcatacacaattcga 721


Query: 994 tgataatcaacaaagtttctttatggctgaaaccttaa 1031
||||||||||||||||||||||||||||||||||||||
Sbjct: 722 tgataatcaacaaagtttctttatggctgaaaccttaa 759

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 883,877,433
Number of extensions: 49165606
Number of successful extensions: 3670655
Number of sequences better than 10.0: 54
Length of query: 1232
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1208
Effective length of database: 97,308,875,965
Effective search space: 117549122165720
Effective search space used: 117549122165720
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.30
Homology vs Protein
Query= Contig-U11543-1 (Contig-U11543-1Q) /CSM_Contig/Contig-U11543-1Q.Seq.d
(1232 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(P53624) RecName: Full=Mannosyl-oligosaccharide alpha-1,2-mannos... 219 2e-55
(P53625) RecName: Full=Mannosyl-oligosaccharide alpha-1,2-mannos... 219 2e-55
AE014298_1493(AE014298|pid:none) Drosophila melanogaster chromos... 219 2e-55
S60709(S60709) alpha 1,2 mannosidase precursor - fruit fly (Dros... 218 5e-55
AP000604_20(AP000604|pid:none) Arabidopsis thaliana genomic DNA,... 208 4e-52
AY050776_1(AY050776|pid:none) Arabidopsis thaliana putative mann... 208 4e-52
BT000893_1(BT000893|pid:none) Arabidopsis thaliana clone C104782... 208 4e-52
AC130599_5(AC130599|pid:none) Oryza sativa (japonica cultivar-gr... 202 2e-50
BT067876_1(BT067876|pid:none) Zea mays full-length cDNA clone ZM... 202 2e-50
AK144486_1(AK144486|pid:none) Mus musculus 1 month neonate cereb... 202 2e-50
BC030443_1(BC030443|pid:none) Mus musculus mannosidase, alpha, c... 202 2e-50
GN102679_1(GN102679|pid:none) Sequence 7460 from Patent WO200903... 202 3e-50
FN357325_40(FN357325|pid:none) Schistosoma mansoni genome sequen... 200 8e-50
AL031280_2(AL031280|pid:none) Human DNA sequence from clone RP1-... 198 3e-49
(Q9NR34) RecName: Full=Mannosyl-oligosaccharide 1,2-alpha-mannos... 198 3e-49
B54408(B54408)mannosyl-oligosaccharide 1,2-alpha-mannosidase (EC... 197 6e-49
(P45701) RecName: Full=Mannosyl-oligosaccharide 1,2-alpha-mannos... 197 6e-49
(O02773) RecName: Full=Mannosyl-oligosaccharide 1,2-alpha-mannos... 197 8e-49
AC024261_3(AC024261|pid:none) Arabidopsis thaliana chromosome 1 ... 197 8e-49
(P33908) RecName: Full=Mannosyl-oligosaccharide 1,2-alpha-mannos... 197 8e-49
T20352(T20352) hypothetical protein D2030.1 - Caenorhabditis ele... 196 1e-48
BC076725_1(BC076725|pid:none) Xenopus laevis mannosidase, alpha,... 196 2e-48
(P39098) RecName: Full=Mannosyl-oligosaccharide 1,2-alpha-mannos... 194 4e-48
BC110743_1(BC110743|pid:none) Xenopus laevis hypothetical protei... 194 7e-48
AF053626_1(AF053626|pid:none) Homo sapiens alpha 1,2-mannosidase... 193 1e-47
AY054482_1(AY054482|pid:none) Arabidopsis thaliana endoplasmic r... 192 3e-47
AJ131824_1(AJ131824|pid:none) Scherffelia dubia mRNA for mannosy... 191 4e-47
CP000500_188(CP000500|pid:none) Pichia stipitis CBS 6054 chromos... 191 5e-47
AF126550_1(AF126550|pid:none) Glycine max mannosyl-oligosacchari... 190 1e-46
A54407(A54407;B54407) alpha-mannosidase (EC 3.2.1.24) - mouse &... 189 1e-46
BX465187_1(BX465187|pid:none) Zebrafish DNA sequence from clone ... 188 4e-46
BC159154_1(BC159154|pid:none) Xenopus tropicalis hypothetical pr... 174 8e-42
FN392320_804(FN392320|pid:none) Pichia pastoris GS115 chromosome... 169 2e-40
CP000595_82(CP000595|pid:none) Ostreococcus lucimarinus CCE9901 ... 168 3e-40
AM270411_28(AM270411|pid:none) Aspergillus niger contig An18c019... 168 4e-40
CT956057_2(CT956057|pid:none) Zebrafish DNA sequence from clone ... 167 5e-40
BC090336_1(BC090336|pid:none) Rattus norvegicus mannosidase, alp... 166 1e-39
AF145732_1(AF145732|pid:none) Homo sapiens endoplasmic reticulum... 166 2e-39
AK074699_1(AK074699|pid:none) Homo sapiens cDNA FLJ90218 fis, cl... 166 2e-39
AB209275_1(AB209275|pid:none) Homo sapiens mRNA for mannosidase,... 165 3e-39
AB069647_1(AB069647|pid:none) Aspergillus oryzae manA gene for 1... 163 1e-38
BC006645_1(BC006645|pid:none) Mus musculus mannosidase, alpha, c... 162 3e-38
GN102641_1(GN102641|pid:none) Sequence 7422 from Patent WO200903... 162 3e-38
AL732557_2(AL732557|pid:none) Mouse DNA sequence from clone RP23... 162 3e-38
AK088523_1(AK088523|pid:none) Mus musculus 2 days neonate thymus... 162 3e-38
AK128257_1(AK128257|pid:none) Homo sapiens cDNA FLJ46392 fis, cl... 161 5e-38
AK001970_1(AK001970|pid:none) Homo sapiens cDNA FLJ11108 fis, cl... 160 7e-38
BC166449_1(BC166449|pid:none) Rattus norvegicus mannosidase, alp... 160 7e-38
(Q9P7C3) RecName: Full=Putative mannosyl-oligosaccharide 1,2-alp... 155 2e-36
T27549(T27549) hypothetical protein ZC410.3 - Caenorhabditis ele... 155 2e-36
CU638744_592(CU638744|pid:none) Podospora anserina genomic DNA c... 155 3e-36
DQ176863_1(DQ176863|pid:none) Coccidioides posadasii alpha-manno... 154 5e-36
S63701(S63701;S70747)mannosyl-oligosaccharide 1,2-alpha-mannosid... 152 2e-35
DQ490469_1(DQ490469|pid:none) Emericella nidulans alpha-1,2-mann... 151 5e-35
BT084301_1(BT084301|pid:none) Zea mays full-length cDNA clone ZM... 151 5e-35
AF129496_1(AF129496|pid:none) Emericella nidulans class I alpha-... 150 1e-34
AM269984_17(AM269984|pid:none) Aspergillus niger contig An01c037... 150 1e-34
AE016818_509(AE016818|pid:none) Ashbya gossypii (= Eremothecium ... 148 4e-34
U41272_1(U41272|pid:none) Caenorhabditis elegans cosmid T03G11, ... 147 6e-34
AM920431_1417(AM920431|pid:none) Penicillium chrysogenum Wiscons... 147 6e-34
GN102657_1(GN102657|pid:none) Sequence 7438 from Patent WO200903... 147 6e-34
BT068353_1(BT068353|pid:none) Zea mays full-length cDNA clone ZM... 147 8e-34
AY852253_1(AY852253|pid:none) Aspergillus fumigatus mannosidase ... 146 1e-33
CR382122_178(CR382122|pid:none) Kluyveromyces lactis strain NRRL... 145 3e-33
AP007155_1058(AP007155|pid:none) Aspergillus oryzae RIB40 genomi... 143 1e-32
GN102643_1(GN102643|pid:none) Sequence 7424 from Patent WO200903... 143 1e-32
AE014297_4662(AE014297|pid:none) Drosophila melanogaster chromos... 142 2e-32
CU633901_276(CU633901|pid:none) Podospora anserina genomic DNA c... 140 7e-32
GN102609_1(GN102609|pid:none) Sequence 7390 from Patent WO200903... 139 2e-31
GN102651_1(GN102651|pid:none) Sequence 7432 from Patent WO200903... 138 5e-31
GN102633_1(GN102633|pid:none) Sequence 7414 from Patent WO200903... 137 8e-31
AX103358_1(AX103358|pid:none) Sequence 1 from Patent WO0121769. 135 2e-30
(P32906) RecName: Full=Endoplasmic reticulum mannosyl-oligosacch... 134 5e-30
AM920437_1220(AM920437|pid:none) Penicillium chrysogenum Wiscons... 134 5e-30
CU633895_286(CU633895|pid:none) Podospora anserina genomic DNA c... 134 7e-30
GN102605_1(GN102605|pid:none) Sequence 7386 from Patent WO200903... 132 3e-29
CU640366_508(CU640366|pid:none) Podospora anserina genomic DNA c... 132 3e-29
AM850111_5(AM850111|pid:none) Nakaseomyces delphensis partial vp... 131 4e-29
AK074559_1(AK074559|pid:none) Homo sapiens cDNA FLJ90078 fis, cl... 129 2e-28
GN102619_1(GN102619|pid:none) Sequence 7400 from Patent WO200903... 128 5e-28
AF318353_1(AF318353|pid:none) Homo sapiens pp6318 mRNA, complete... 126 2e-27
AF129495_1(AF129495|pid:none) Ophiostoma novo-ulmi class I alpha... 126 2e-27
GN102607_1(GN102607|pid:none) Sequence 7388 from Patent WO200903... 124 5e-27
AL929554_2(AL929554|pid:none) Human DNA sequence from clone RP11... 123 1e-26
CU633895_107(CU633895|pid:none) Podospora anserina genomic DNA c... 120 8e-26
AB209276_1(AB209276|pid:none) Homo sapiens mRNA for alpha 1,2-ma... 120 1e-25
AL670007_31(AL670007|pid:none) Neurospora crassa DNA linkage gro... 118 5e-25
AM920437_402(AM920437|pid:none) Penicillium chrysogenum Wisconsi... 106 2e-21
GN102615_1(GN102615|pid:none) Sequence 7396 from Patent WO200903... 104 7e-21
AM270115_12(AM270115|pid:none) Aspergillus niger contig An06c009... 103 1e-20
AF129497_1(AF129497|pid:none) Emericella nidulans class I alpha-... 100 2e-19
BX842637_17(BX842637|pid:none) Neurospora crassa DNA linkage gro... 98 7e-19
GN102653_1(GN102653|pid:none) Sequence 7434 from Patent WO200903... 97 2e-18
CR382130_534(CR382130|pid:none) Yarrowia lipolytica strain CLIB1... 95 6e-18
AX880354_1(AX880354|pid:none) Sequence 15259 from Patent EP10746... 94 1e-17
AC005916_2(AC005916|pid:none) Arabidopsis thaliana chromosome 1 ... 93 2e-17
AK229946_1(AK229946|pid:none) Arabidopsis thaliana mRNA for puta... 91 6e-17
FN357920_22(FN357920|pid:none) Schistosoma mansoni genome sequen... 91 1e-16
BC055547_1(BC055547|pid:none) Danio rerio ER degradation enhance... 91 1e-16
FN357871_7(FN357871|pid:none) Schistosoma mansoni genome sequenc... 90 1e-16
FN357384_24(FN357384|pid:none) Schistosoma mansoni genome sequen... 89 2e-16
GN102685_1(GN102685|pid:none) Sequence 7466 from Patent WO200903... 89 3e-16
AM270259_9(AM270259|pid:none) Aspergillus niger contig An12c0020... 89 4e-16
AF288393_1(AF288393|pid:none) Homo sapiens C1orf22 mRNA, complet... 88 5e-16
(Q9BZQ6) RecName: Full=ER degradation-enhancing alpha-mannosidas... 88 5e-16
BC145357_1(BC145357|pid:none) Mus musculus ER degradation enhanc... 88 5e-16
(Q2HXL6) RecName: Full=ER degradation-enhancing alpha-mannosidas... 88 5e-16
BC144149_1(BC144149|pid:none) Homo sapiens cDNA clone MGC:177686... 88 5e-16
CU928179_17(CU928179|pid:none) Zygosaccharomyces rouxii strain C... 87 2e-15
CR760698_1(CR760698|pid:none) Xenopus tropicalis finished cDNA, ... 86 2e-15
BC072826_1(BC072826|pid:none) Xenopus laevis MGC80179 protein, m... 86 3e-15
(Q6GQB9) RecName: Full=ER degradation-enhancing alpha-mannosidas... 86 3e-15
AY325164_1(AY325164|pid:none) Rattus norvegicus Aa2-166 mRNA, co... 86 4e-15
BC076880_1(BC076880|pid:none) Xenopus tropicalis MGC88910 protei... 85 5e-15
AE016817_11(AE016817|pid:none) Ashbya gossypii (= Eremothecium g... 85 6e-15
T20009(T20009)hypothetical protein C47E12.3 - Caenorhabditis ele... 84 1e-14
BC079029_1(BC079029|pid:none) Rattus norvegicus ER degradation e... 84 1e-14
AK080636_1(AK080636|pid:none) Mus musculus 10 days neonate corte... 84 1e-14
BC008268_1(BC008268|pid:none) Mus musculus ER degradation enhanc... 84 1e-14
AK298794_1(AK298794|pid:none) Homo sapiens cDNA FLJ56127 complet... 83 2e-14
(Q9BV94) RecName: Full=ER degradation-enhancing alpha-mannosidas... 83 2e-14
CR382344_2(CR382344|pid:none) Zebrafish DNA sequence from clone ... 83 2e-14
BC001371_1(BC001371|pid:none) Homo sapiens ER degradation enhanc... 83 2e-14
AK001645_1(AK001645|pid:none) Homo sapiens cDNA FLJ10783 fis, cl... 83 2e-14
BC151591_1(BC151591|pid:none) Bos taurus ER degradation enhancer... 83 2e-14
T27625(T27625)hypothetical protein ZC506.1 - Caenorhabditis eleg... 82 3e-14
CP001328_695(CP001328|pid:none) Micromonas sp. RCC299 chromosome... 82 4e-14
AK293583_1(AK293583|pid:none) Homo sapiens cDNA FLJ56055 complet... 81 7e-14
AB026651_4(AB026651|pid:none) Arabidopsis thaliana genomic DNA, ... 81 9e-14
CR861130_1(CR861130|pid:none) Pongo abelii mRNA; cDNA DKFZp459A0... 80 1e-13
AK303816_1(AK303816|pid:none) Homo sapiens cDNA FLJ61531 complet... 80 1e-13
GN102625_1(GN102625|pid:none) Sequence 7406 from Patent WO200903... 80 1e-13
AC159431_13(AC159431|pid:none) Trypanosoma brucei chromosome 8 c... 79 3e-13
EU952025_1(EU952025|pid:none) Zea mays clone 1065056 ER degradat... 78 6e-13
AP008207_2669(AP008207|pid:none) Oryza sativa (japonica cultivar... 77 1e-12
AP003265_11(AP003265|pid:none) Oryza sativa Japonica Group genom... 77 1e-12
BC151305_1(BC151305|pid:none) Bos taurus ER degradation enhancer... 77 2e-12
FN392321_914(FN392321|pid:none) Pichia pastoris GS115 chromosome... 76 2e-12
AK129090_1(AK129090|pid:none) Mus musculus mRNA for mKIAA0212 pr... 76 2e-12
BC023237_1(BC023237|pid:none) Mus musculus ER degradation enhanc... 76 2e-12
(Q92611) RecName: Full=ER degradation-enhancing alpha-mannosidas... 76 3e-12
(P38888) RecName: Full=ER degradation-enhancing alpha-mannosidas... 75 4e-12
GN118037_1(GN118037|pid:none) Sequence 933 from Patent WO2009037... 75 5e-12
AY813200_1(AY813200|pid:none) Schistosoma japonicum SJCHGC04517 ... 74 1e-11
FM992689_356(FM992689|pid:none) Candida dubliniensis CD36 chromo... 74 1e-11
AK151668_1(AK151668|pid:none) Mus musculus bone marrow macrophag... 74 1e-11
AL021086_2(AL021086|pid:none) Drosophila melanogaster cosmid clo... 73 2e-11
AE017351_317(AE017351|pid:none) Cryptococcus neoformans var. neo... 73 2e-11
CU633438_374(CU633438|pid:none) Podospora anserina genomic DNA c... 72 4e-11
AK135969_1(AK135969|pid:none) Mus musculus in vitro fertilized e... 70 2e-10
AY261880_1(AY261880|pid:none) Ciona intestinalis type II membran... 66 3e-09
AY915059_1(AY915059|pid:none) Schistosoma japonicum SJCHGC02710 ... 64 8e-09
CP000927_4022(CP000927|pid:none) Caulobacter sp. K31, complete g... 61 7e-08
CU928178_125(CU928178|pid:none) Zygosaccharomyces rouxii strain ... 60 2e-07
EF137049_1(EF137049|pid:none) Drosophila americana isolate FP99.... 57 1e-06
CU928171_775(CU928171|pid:none) Kluyveromyces thermotolerans str... 52 6e-05
AP007169_508(AP007169|pid:none) Aspergillus oryzae RIB40 genomic... 50 1e-04
(Q12205) RecName: Full=Uncharacterized glycosyl hydrolase YLR057... 48 8e-04
CR380952_65(CR380952|pid:none) Candida glabrata strain CBS138 ch... 48 8e-04
Z73230_1(Z73230|pid:none) S.cerevisiae chromosome XII reading fr... 47 0.001
AF149705_1(AF149705|pid:none) Candida dubliniensis alpha-mannosi... 47 0.002
BC045461_1(BC045461|pid:none) Danio rerio ER degradation enhance... 46 0.002
EF215420_1(EF215420|pid:none) Callithrix jacchus clone K04-40.3_... 45 0.007
AK127005_1(AK127005|pid:none) Homo sapiens cDNA FLJ45060 fis, cl... 44 0.009
AK296878_1(AK296878|pid:none) Homo sapiens cDNA FLJ60292 complet... 41 0.10
BT061361_1(BT061361|pid:none) Zea mays full-length cDNA clone ZM... 38 0.65
CP000863_688(CP000863|pid:none) Acinetobacter baumannii ACICU, c... 36 2.5
AM494952_157(AM494952|pid:none) Leishmania braziliensis chromoso... 36 3.2
AE016816_417(AE016816|pid:none) Ashbya gossypii (= Eremothecium ... 35 7.2
CP001358_1319(CP001358|pid:none) Desulfovibrio desulfuricans sub... 35 7.2

>(P53624) RecName: Full=Mannosyl-oligosaccharide alpha-1,2-mannosidase
isoform A; EC=3.2.1.113; AltName:
Full=Man(9)-alpha-mannosidase; AltName:
Full=Mannosidase-1; &AE014298_1487(AE014298|pid:none)
&AE014298_1488(AE014298|pid:none)
&AE014298_1489(AE014298|pid:none)
&AE014298_1490(AE014298|pid:none)
&AE014298_1491(AE014298|pid:none)
&AE014298_1492(AE014298|pid:none)
&BT011036_1(BT011036|pid:none)
Length = 667

Score = 219 bits (558), Expect = 2e-55
Identities = 116/282 (41%), Positives = 176/282 (62%)
Frame = +2

Query: 275 DPKYKEYSDGVVDALAAMKPTIKGLLPIYVSMDAQRFCNSRVSVGAMGDSYYEYLLKMWI 454
+P Y+E + L ++ KGL P +++ ++ +S+GA+GDSYYEYLLK W+
Sbjct: 373 NPLYRERVQTIRQVLKEIEKP-KGLYPNFLNPKTGKWGQLHMSLGALGDSYYEYLLKAWL 431

Query: 455 YHDGREERYSTLFQESADAIIEHLYKVSPKGDGYITIMDYDVPTNTQEHLTCFAGGMYAL 634
+E +F E+ AI++ + + SP G Y++ + +D + +HL CF+GG++AL
Sbjct: 432 QSGQTDEEAREMFDEAMLAILDKMVRTSPGGLTYVSDLKFDRLEHKMDHLACFSGGLFAL 491

Query: 635 AAVSNITGGDVEKDKLYMKVGEEVTKTCTKLYLTSATGLGPETAYFNQNGEIEFSGHSAA 814
A T + DK YM+VG+ +T TC + Y+ + T LGPE F++ E + S
Sbjct: 492 GAA---TRQNDYTDK-YMEVGKGITNTCHESYIRAPTQLGPEAFRFSEAVEAR-ALRSQE 546

Query: 815 PHYILRPETVESLFILYRLTGDTIYQDWAWQIFESINSVCRTNNGFAGVKDVSNIHTQFD 994
+YILRPET ES F+L+RLT D Y+DW W+ ++ CRT +G+ G+++V Q D
Sbjct: 547 KYYILRPETFESYFVLWRLTHDQKYRDWGWEAVLALEKHCRTAHGYCGLRNVYQQEPQKD 606

Query: 995 DNQQSFFMAETLKYLYLIFQPSSVIPLNKYVFNTEAHPVKIQ 1120
D QQSFF+AETLKYLYL+F SV+PL+++VFNTEAHP+ I+
Sbjct: 607 DVQQSFFLAETLKYLYLLFSDDSVLPLDEWVFNTEAHPLPIK 648

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,842,022,232
Number of extensions: 37938276
Number of successful extensions: 74855
Number of sequences better than 10.0: 170
Number of HSP's gapped: 74424
Number of HSP's successfully gapped: 203
Length of query: 410
Length of database: 1,051,180,864
Length adjustment: 131
Effective length of query: 279
Effective length of database: 627,191,635
Effective search space: 174986466165
Effective search space used: 174986466165
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 1.02 gvh: 0.38 alm: 0.10 top: 0.53 tms: 0.13 mit: 0.35 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

32.0 %: endoplasmic reticulum
20.0 %: mitochondrial
20.0 %: plasma membrane
8.0 %: extracellular, including cell wall
4.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for Contig-U11543-1 is end

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 1
AF (FL, S) 1
SL (DIR, L) 2
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 2
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0