Contig-U11543-1 |
Contig ID |
Contig-U11543-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
gap included |
Contig length |
1222 |
Chromosome number (1..6, M) |
1 |
Chromosome length |
4919822 |
Start point |
2039619 |
End point |
2040841 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
7 |
Number of EST |
9 |
Link to clone list |
U11543 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.25 |
Homology vs DNA |
|
protein update |
2009. 6.30 |
Homology vs Protein |
Query= Contig-U11543-1 (Contig-U11543-1Q) /CSM_Contig/Contig-U11543-1Q.Seq.d (1232 letters)
Database: nrp_B 3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
(P53624) RecName: Full=Mannosyl-oligosaccharide alpha-1,2-mannos... 219 2e-55 (P53625) RecName: Full=Mannosyl-oligosaccharide alpha-1,2-mannos... 219 2e-55 AE014298_1493(AE014298|pid:none) Drosophila melanogaster chromos... 219 2e-55 S60709(S60709) alpha 1,2 mannosidase precursor - fruit fly (Dros... 218 5e-55 AP000604_20(AP000604|pid:none) Arabidopsis thaliana genomic DNA,... 208 4e-52 AY050776_1(AY050776|pid:none) Arabidopsis thaliana putative mann... 208 4e-52 BT000893_1(BT000893|pid:none) Arabidopsis thaliana clone C104782... 208 4e-52 AC130599_5(AC130599|pid:none) Oryza sativa (japonica cultivar-gr... 202 2e-50 BT067876_1(BT067876|pid:none) Zea mays full-length cDNA clone ZM... 202 2e-50 AK144486_1(AK144486|pid:none) Mus musculus 1 month neonate cereb... 202 2e-50 BC030443_1(BC030443|pid:none) Mus musculus mannosidase, alpha, c... 202 2e-50 GN102679_1(GN102679|pid:none) Sequence 7460 from Patent WO200903... 202 3e-50 FN357325_40(FN357325|pid:none) Schistosoma mansoni genome sequen... 200 8e-50 AL031280_2(AL031280|pid:none) Human DNA sequence from clone RP1-... 198 3e-49 (Q9NR34) RecName: Full=Mannosyl-oligosaccharide 1,2-alpha-mannos... 198 3e-49 B54408(B54408)mannosyl-oligosaccharide 1,2-alpha-mannosidase (EC... 197 6e-49 (P45701) RecName: Full=Mannosyl-oligosaccharide 1,2-alpha-mannos... 197 6e-49 (O02773) RecName: Full=Mannosyl-oligosaccharide 1,2-alpha-mannos... 197 8e-49 AC024261_3(AC024261|pid:none) Arabidopsis thaliana chromosome 1 ... 197 8e-49 (P33908) RecName: Full=Mannosyl-oligosaccharide 1,2-alpha-mannos... 197 8e-49 T20352(T20352) hypothetical protein D2030.1 - Caenorhabditis ele... 196 1e-48 BC076725_1(BC076725|pid:none) Xenopus laevis mannosidase, alpha,... 196 2e-48 (P39098) RecName: Full=Mannosyl-oligosaccharide 1,2-alpha-mannos... 194 4e-48 BC110743_1(BC110743|pid:none) Xenopus laevis hypothetical protei... 194 7e-48 AF053626_1(AF053626|pid:none) Homo sapiens alpha 1,2-mannosidase... 193 1e-47 AY054482_1(AY054482|pid:none) Arabidopsis thaliana endoplasmic r... 192 3e-47 AJ131824_1(AJ131824|pid:none) Scherffelia dubia mRNA for mannosy... 191 4e-47 CP000500_188(CP000500|pid:none) Pichia stipitis CBS 6054 chromos... 191 5e-47 AF126550_1(AF126550|pid:none) Glycine max mannosyl-oligosacchari... 190 1e-46 A54407(A54407;B54407) alpha-mannosidase (EC 3.2.1.24) - mouse &... 189 1e-46 BX465187_1(BX465187|pid:none) Zebrafish DNA sequence from clone ... 188 4e-46 BC159154_1(BC159154|pid:none) Xenopus tropicalis hypothetical pr... 174 8e-42 FN392320_804(FN392320|pid:none) Pichia pastoris GS115 chromosome... 169 2e-40 CP000595_82(CP000595|pid:none) Ostreococcus lucimarinus CCE9901 ... 168 3e-40 AM270411_28(AM270411|pid:none) Aspergillus niger contig An18c019... 168 4e-40 CT956057_2(CT956057|pid:none) Zebrafish DNA sequence from clone ... 167 5e-40 BC090336_1(BC090336|pid:none) Rattus norvegicus mannosidase, alp... 166 1e-39 AF145732_1(AF145732|pid:none) Homo sapiens endoplasmic reticulum... 166 2e-39 AK074699_1(AK074699|pid:none) Homo sapiens cDNA FLJ90218 fis, cl... 166 2e-39 AB209275_1(AB209275|pid:none) Homo sapiens mRNA for mannosidase,... 165 3e-39 AB069647_1(AB069647|pid:none) Aspergillus oryzae manA gene for 1... 163 1e-38 BC006645_1(BC006645|pid:none) Mus musculus mannosidase, alpha, c... 162 3e-38 GN102641_1(GN102641|pid:none) Sequence 7422 from Patent WO200903... 162 3e-38 AL732557_2(AL732557|pid:none) Mouse DNA sequence from clone RP23... 162 3e-38 AK088523_1(AK088523|pid:none) Mus musculus 2 days neonate thymus... 162 3e-38 AK128257_1(AK128257|pid:none) Homo sapiens cDNA FLJ46392 fis, cl... 161 5e-38 AK001970_1(AK001970|pid:none) Homo sapiens cDNA FLJ11108 fis, cl... 160 7e-38 BC166449_1(BC166449|pid:none) Rattus norvegicus mannosidase, alp... 160 7e-38 (Q9P7C3) RecName: Full=Putative mannosyl-oligosaccharide 1,2-alp... 155 2e-36 T27549(T27549) hypothetical protein ZC410.3 - Caenorhabditis ele... 155 2e-36 CU638744_592(CU638744|pid:none) Podospora anserina genomic DNA c... 155 3e-36 DQ176863_1(DQ176863|pid:none) Coccidioides posadasii alpha-manno... 154 5e-36 S63701(S63701;S70747)mannosyl-oligosaccharide 1,2-alpha-mannosid... 152 2e-35 DQ490469_1(DQ490469|pid:none) Emericella nidulans alpha-1,2-mann... 151 5e-35 BT084301_1(BT084301|pid:none) Zea mays full-length cDNA clone ZM... 151 5e-35 AF129496_1(AF129496|pid:none) Emericella nidulans class I alpha-... 150 1e-34 AM269984_17(AM269984|pid:none) Aspergillus niger contig An01c037... 150 1e-34 AE016818_509(AE016818|pid:none) Ashbya gossypii (= Eremothecium ... 148 4e-34 U41272_1(U41272|pid:none) Caenorhabditis elegans cosmid T03G11, ... 147 6e-34 AM920431_1417(AM920431|pid:none) Penicillium chrysogenum Wiscons... 147 6e-34 GN102657_1(GN102657|pid:none) Sequence 7438 from Patent WO200903... 147 6e-34 BT068353_1(BT068353|pid:none) Zea mays full-length cDNA clone ZM... 147 8e-34 AY852253_1(AY852253|pid:none) Aspergillus fumigatus mannosidase ... 146 1e-33 CR382122_178(CR382122|pid:none) Kluyveromyces lactis strain NRRL... 145 3e-33 AP007155_1058(AP007155|pid:none) Aspergillus oryzae RIB40 genomi... 143 1e-32 GN102643_1(GN102643|pid:none) Sequence 7424 from Patent WO200903... 143 1e-32 AE014297_4662(AE014297|pid:none) Drosophila melanogaster chromos... 142 2e-32 CU633901_276(CU633901|pid:none) Podospora anserina genomic DNA c... 140 7e-32 GN102609_1(GN102609|pid:none) Sequence 7390 from Patent WO200903... 139 2e-31 GN102651_1(GN102651|pid:none) Sequence 7432 from Patent WO200903... 138 5e-31 GN102633_1(GN102633|pid:none) Sequence 7414 from Patent WO200903... 137 8e-31 AX103358_1(AX103358|pid:none) Sequence 1 from Patent WO0121769. 135 2e-30 (P32906) RecName: Full=Endoplasmic reticulum mannosyl-oligosacch... 134 5e-30 AM920437_1220(AM920437|pid:none) Penicillium chrysogenum Wiscons... 134 5e-30 CU633895_286(CU633895|pid:none) Podospora anserina genomic DNA c... 134 7e-30 GN102605_1(GN102605|pid:none) Sequence 7386 from Patent WO200903... 132 3e-29 CU640366_508(CU640366|pid:none) Podospora anserina genomic DNA c... 132 3e-29 AM850111_5(AM850111|pid:none) Nakaseomyces delphensis partial vp... 131 4e-29 AK074559_1(AK074559|pid:none) Homo sapiens cDNA FLJ90078 fis, cl... 129 2e-28 GN102619_1(GN102619|pid:none) Sequence 7400 from Patent WO200903... 128 5e-28 AF318353_1(AF318353|pid:none) Homo sapiens pp6318 mRNA, complete... 126 2e-27 AF129495_1(AF129495|pid:none) Ophiostoma novo-ulmi class I alpha... 126 2e-27 GN102607_1(GN102607|pid:none) Sequence 7388 from Patent WO200903... 124 5e-27 AL929554_2(AL929554|pid:none) Human DNA sequence from clone RP11... 123 1e-26 CU633895_107(CU633895|pid:none) Podospora anserina genomic DNA c... 120 8e-26 AB209276_1(AB209276|pid:none) Homo sapiens mRNA for alpha 1,2-ma... 120 1e-25 AL670007_31(AL670007|pid:none) Neurospora crassa DNA linkage gro... 118 5e-25 AM920437_402(AM920437|pid:none) Penicillium chrysogenum Wisconsi... 106 2e-21 GN102615_1(GN102615|pid:none) Sequence 7396 from Patent WO200903... 104 7e-21 AM270115_12(AM270115|pid:none) Aspergillus niger contig An06c009... 103 1e-20 AF129497_1(AF129497|pid:none) Emericella nidulans class I alpha-... 100 2e-19 BX842637_17(BX842637|pid:none) Neurospora crassa DNA linkage gro... 98 7e-19 GN102653_1(GN102653|pid:none) Sequence 7434 from Patent WO200903... 97 2e-18 CR382130_534(CR382130|pid:none) Yarrowia lipolytica strain CLIB1... 95 6e-18 AX880354_1(AX880354|pid:none) Sequence 15259 from Patent EP10746... 94 1e-17 AC005916_2(AC005916|pid:none) Arabidopsis thaliana chromosome 1 ... 93 2e-17 AK229946_1(AK229946|pid:none) Arabidopsis thaliana mRNA for puta... 91 6e-17 FN357920_22(FN357920|pid:none) Schistosoma mansoni genome sequen... 91 1e-16 BC055547_1(BC055547|pid:none) Danio rerio ER degradation enhance... 91 1e-16 FN357871_7(FN357871|pid:none) Schistosoma mansoni genome sequenc... 90 1e-16 FN357384_24(FN357384|pid:none) Schistosoma mansoni genome sequen... 89 2e-16 GN102685_1(GN102685|pid:none) Sequence 7466 from Patent WO200903... 89 3e-16 AM270259_9(AM270259|pid:none) Aspergillus niger contig An12c0020... 89 4e-16 AF288393_1(AF288393|pid:none) Homo sapiens C1orf22 mRNA, complet... 88 5e-16 (Q9BZQ6) RecName: Full=ER degradation-enhancing alpha-mannosidas... 88 5e-16 BC145357_1(BC145357|pid:none) Mus musculus ER degradation enhanc... 88 5e-16 (Q2HXL6) RecName: Full=ER degradation-enhancing alpha-mannosidas... 88 5e-16 BC144149_1(BC144149|pid:none) Homo sapiens cDNA clone MGC:177686... 88 5e-16 CU928179_17(CU928179|pid:none) Zygosaccharomyces rouxii strain C... 87 2e-15 CR760698_1(CR760698|pid:none) Xenopus tropicalis finished cDNA, ... 86 2e-15 BC072826_1(BC072826|pid:none) Xenopus laevis MGC80179 protein, m... 86 3e-15 (Q6GQB9) RecName: Full=ER degradation-enhancing alpha-mannosidas... 86 3e-15 AY325164_1(AY325164|pid:none) Rattus norvegicus Aa2-166 mRNA, co... 86 4e-15 BC076880_1(BC076880|pid:none) Xenopus tropicalis MGC88910 protei... 85 5e-15 AE016817_11(AE016817|pid:none) Ashbya gossypii (= Eremothecium g... 85 6e-15 T20009(T20009)hypothetical protein C47E12.3 - Caenorhabditis ele... 84 1e-14 BC079029_1(BC079029|pid:none) Rattus norvegicus ER degradation e... 84 1e-14 AK080636_1(AK080636|pid:none) Mus musculus 10 days neonate corte... 84 1e-14 BC008268_1(BC008268|pid:none) Mus musculus ER degradation enhanc... 84 1e-14 AK298794_1(AK298794|pid:none) Homo sapiens cDNA FLJ56127 complet... 83 2e-14 (Q9BV94) RecName: Full=ER degradation-enhancing alpha-mannosidas... 83 2e-14 CR382344_2(CR382344|pid:none) Zebrafish DNA sequence from clone ... 83 2e-14 BC001371_1(BC001371|pid:none) Homo sapiens ER degradation enhanc... 83 2e-14 AK001645_1(AK001645|pid:none) Homo sapiens cDNA FLJ10783 fis, cl... 83 2e-14 BC151591_1(BC151591|pid:none) Bos taurus ER degradation enhancer... 83 2e-14 T27625(T27625)hypothetical protein ZC506.1 - Caenorhabditis eleg... 82 3e-14 CP001328_695(CP001328|pid:none) Micromonas sp. RCC299 chromosome... 82 4e-14 AK293583_1(AK293583|pid:none) Homo sapiens cDNA FLJ56055 complet... 81 7e-14 AB026651_4(AB026651|pid:none) Arabidopsis thaliana genomic DNA, ... 81 9e-14 CR861130_1(CR861130|pid:none) Pongo abelii mRNA; cDNA DKFZp459A0... 80 1e-13 AK303816_1(AK303816|pid:none) Homo sapiens cDNA FLJ61531 complet... 80 1e-13 GN102625_1(GN102625|pid:none) Sequence 7406 from Patent WO200903... 80 1e-13 AC159431_13(AC159431|pid:none) Trypanosoma brucei chromosome 8 c... 79 3e-13 EU952025_1(EU952025|pid:none) Zea mays clone 1065056 ER degradat... 78 6e-13 AP008207_2669(AP008207|pid:none) Oryza sativa (japonica cultivar... 77 1e-12 AP003265_11(AP003265|pid:none) Oryza sativa Japonica Group genom... 77 1e-12 BC151305_1(BC151305|pid:none) Bos taurus ER degradation enhancer... 77 2e-12 FN392321_914(FN392321|pid:none) Pichia pastoris GS115 chromosome... 76 2e-12 AK129090_1(AK129090|pid:none) Mus musculus mRNA for mKIAA0212 pr... 76 2e-12 BC023237_1(BC023237|pid:none) Mus musculus ER degradation enhanc... 76 2e-12 (Q92611) RecName: Full=ER degradation-enhancing alpha-mannosidas... 76 3e-12 (P38888) RecName: Full=ER degradation-enhancing alpha-mannosidas... 75 4e-12 GN118037_1(GN118037|pid:none) Sequence 933 from Patent WO2009037... 75 5e-12 AY813200_1(AY813200|pid:none) Schistosoma japonicum SJCHGC04517 ... 74 1e-11 FM992689_356(FM992689|pid:none) Candida dubliniensis CD36 chromo... 74 1e-11 AK151668_1(AK151668|pid:none) Mus musculus bone marrow macrophag... 74 1e-11 AL021086_2(AL021086|pid:none) Drosophila melanogaster cosmid clo... 73 2e-11 AE017351_317(AE017351|pid:none) Cryptococcus neoformans var. neo... 73 2e-11 CU633438_374(CU633438|pid:none) Podospora anserina genomic DNA c... 72 4e-11 AK135969_1(AK135969|pid:none) Mus musculus in vitro fertilized e... 70 2e-10 AY261880_1(AY261880|pid:none) Ciona intestinalis type II membran... 66 3e-09 AY915059_1(AY915059|pid:none) Schistosoma japonicum SJCHGC02710 ... 64 8e-09 CP000927_4022(CP000927|pid:none) Caulobacter sp. K31, complete g... 61 7e-08 CU928178_125(CU928178|pid:none) Zygosaccharomyces rouxii strain ... 60 2e-07 EF137049_1(EF137049|pid:none) Drosophila americana isolate FP99.... 57 1e-06 CU928171_775(CU928171|pid:none) Kluyveromyces thermotolerans str... 52 6e-05 AP007169_508(AP007169|pid:none) Aspergillus oryzae RIB40 genomic... 50 1e-04 (Q12205) RecName: Full=Uncharacterized glycosyl hydrolase YLR057... 48 8e-04 CR380952_65(CR380952|pid:none) Candida glabrata strain CBS138 ch... 48 8e-04 Z73230_1(Z73230|pid:none) S.cerevisiae chromosome XII reading fr... 47 0.001 AF149705_1(AF149705|pid:none) Candida dubliniensis alpha-mannosi... 47 0.002 BC045461_1(BC045461|pid:none) Danio rerio ER degradation enhance... 46 0.002 EF215420_1(EF215420|pid:none) Callithrix jacchus clone K04-40.3_... 45 0.007 AK127005_1(AK127005|pid:none) Homo sapiens cDNA FLJ45060 fis, cl... 44 0.009 AK296878_1(AK296878|pid:none) Homo sapiens cDNA FLJ60292 complet... 41 0.10 BT061361_1(BT061361|pid:none) Zea mays full-length cDNA clone ZM... 38 0.65 CP000863_688(CP000863|pid:none) Acinetobacter baumannii ACICU, c... 36 2.5 AM494952_157(AM494952|pid:none) Leishmania braziliensis chromoso... 36 3.2 AE016816_417(AE016816|pid:none) Ashbya gossypii (= Eremothecium ... 35 7.2 CP001358_1319(CP001358|pid:none) Desulfovibrio desulfuricans sub... 35 7.2
>(P53624) RecName: Full=Mannosyl-oligosaccharide alpha-1,2-mannosidase isoform A; EC=3.2.1.113; AltName: Full=Man(9)-alpha-mannosidase; AltName: Full=Mannosidase-1; &AE014298_1487(AE014298|pid:none) &AE014298_1488(AE014298|pid:none) &AE014298_1489(AE014298|pid:none) &AE014298_1490(AE014298|pid:none) &AE014298_1491(AE014298|pid:none) &AE014298_1492(AE014298|pid:none) &BT011036_1(BT011036|pid:none) Length = 667
Score = 219 bits (558), Expect = 2e-55 Identities = 116/282 (41%), Positives = 176/282 (62%) Frame = +2
Query: 275 DPKYKEYSDGVVDALAAMKPTIKGLLPIYVSMDAQRFCNSRVSVGAMGDSYYEYLLKMWI 454 +P Y+E + L ++ KGL P +++ ++ +S+GA+GDSYYEYLLK W+ Sbjct: 373 NPLYRERVQTIRQVLKEIEKP-KGLYPNFLNPKTGKWGQLHMSLGALGDSYYEYLLKAWL 431
Query: 455 YHDGREERYSTLFQESADAIIEHLYKVSPKGDGYITIMDYDVPTNTQEHLTCFAGGMYAL 634 +E +F E+ AI++ + + SP G Y++ + +D + +HL CF+GG++AL Sbjct: 432 QSGQTDEEAREMFDEAMLAILDKMVRTSPGGLTYVSDLKFDRLEHKMDHLACFSGGLFAL 491
Query: 635 AAVSNITGGDVEKDKLYMKVGEEVTKTCTKLYLTSATGLGPETAYFNQNGEIEFSGHSAA 814 A T + DK YM+VG+ +T TC + Y+ + T LGPE F++ E + S Sbjct: 492 GAA---TRQNDYTDK-YMEVGKGITNTCHESYIRAPTQLGPEAFRFSEAVEAR-ALRSQE 546
Query: 815 PHYILRPETVESLFILYRLTGDTIYQDWAWQIFESINSVCRTNNGFAGVKDVSNIHTQFD 994 +YILRPET ES F+L+RLT D Y+DW W+ ++ CRT +G+ G+++V Q D Sbjct: 547 KYYILRPETFESYFVLWRLTHDQKYRDWGWEAVLALEKHCRTAHGYCGLRNVYQQEPQKD 606
Query: 995 DNQQSFFMAETLKYLYLIFQPSSVIPLNKYVFNTEAHPVKIQ 1120 D QQSFF+AETLKYLYL+F SV+PL+++VFNTEAHP+ I+ Sbjct: 607 DVQQSFFLAETLKYLYLLFSDDSVLPLDEWVFNTEAHPLPIK 648
Lambda K H 0.318 0.134 0.401
Gapped Lambda K H 0.267 0.0410 0.140
Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3236559 Number of Hits to DB: 1,842,022,232 Number of extensions: 37938276 Number of successful extensions: 74855 Number of sequences better than 10.0: 170 Number of HSP's gapped: 74424 Number of HSP's successfully gapped: 203 Length of query: 410 Length of database: 1,051,180,864 Length adjustment: 131 Effective length of query: 279 Effective length of database: 627,191,635 Effective search space: 174986466165 Effective search space used: 174986466165 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 32 (16.9 bits)
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
1 |
AF (FL, S) |
1 |
SL (DIR, L) |
2 |
SS (DIR, S) |
1 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
2 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |