Contig-U11539-1 |
Contig ID |
Contig-U11539-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
gap included |
Contig length |
1277 |
Chromosome number (1..6, M) |
- |
Chromosome length |
- |
Start point |
- |
End point |
- |
Strand (PLUS/MINUS) |
- |
Number of clones |
1 |
Number of EST |
2 |
Link to clone list |
U11539 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.25 |
Homology vs DNA |
Query= Contig-U11539-1 (Contig-U11539-1Q) /CSM_Contig/Contig-U11539-1Q.Seq.d (1287 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ339400) Dictyostelium discoideum cDNA clone:dda65o05, 5' ... 1120 0.0 1 (BJ357933) Dictyostelium discoideum cDNA clone:dda65o05, 3' ... 353 e-166 4 (AC084357) Homo sapiens 12q BAC RP11-415I12 (Roswell Park Ca... 36 0.12 2 (DH743907) Rattus norvegicus DNA, BAC clone: RNB1-319D07, 5'... 40 0.14 3 (EG391324) BG01028B2G10.r1 BG01 - normalized library Leymus ... 50 0.21 1 (EG591939) F0377R one day old larvae library Antheraea mylit... 34 0.36 3 (BA000026) Mycoplasma penetrans HF-2 DNA, complete genome. 44 0.46 17 (AC219457) Bos taurus clone CH240-341D15, WORKING DRAFT SEQU... 34 0.46 2 (EG591885) F0325R one day old larvae library Antheraea mylit... 34 0.52 3 (ER291662) 1092343606840 Global-Ocean-Sampling_GS-34-01-01-1... 38 0.60 2 (EJ530738) 1092955223214 Global-Ocean-Sampling_GS-29-01-01-1... 38 0.60 2 (EJ273117) 1095366000373 Global-Ocean-Sampling_GS-27-01-01-1... 38 0.60 2 (EG594080) E0960R one day old larvae library Antheraea mylit... 34 0.62 3 (CP000013) Borrelia garinii PBi, complete genome. 34 0.67 17 (AL445564) Mycoplasma pulmonis (strain UAB CTIP) complete ge... 34 0.77 12 (AP008217) Oryza sativa (japonica cultivar-group) genomic DN... 48 0.83 1 (AM464694) Vitis vinifera contig VV78X248540.2, whole genome... 48 0.83 1 (AC136447) Oryza sativa Japonica Group chromosome 11 clone O... 48 0.83 1 (AC133004) Oryza sativa Japonica Group chromosome 11 clone O... 48 0.83 1 (EA724658) Sequence 103537 from patent US 7365185. 48 0.83 1 (DX549146) GH_MBb0026A20r GH_MBb Gossypium hirsutum genomic ... 48 0.83 1 (CU145667) Equus caballus GSS, BAC clone CH241-270G20, T7 en... 48 0.83 1 (CU113915) Equus caballus GSS, BAC clone CH241-224A5, T7 end... 48 0.83 1 (AC189734) Trichinella spiralis BAC clone TS195-20H12 from c... 34 0.86 8 (AE017245) Mycoplasma synoviae 53, complete genome. 34 0.91 16 (EA689471) Sequence 68350 from patent US 7365185. 46 0.93 2 (AM481589) Vitis vinifera contig VV79X004152.2, whole genome... 36 0.97 4 (AC231365) Medicago truncatula clone mth2-121k13, WORKING DR... 32 1.7 6 (AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 36 2.0 16 (AC024810) Caenorhabditis elegans cosmid Y54E10A, complete s... 44 2.2 4 (EX336114) GQ03001.SP6_N09 GQ030 - Xylem planings - daytime ... 34 2.2 2 (EX333203) GQ02905.SP6_B17 GQ029 - Xylem scrapings - AT NITE... 34 2.2 2 (AC186642) Phycomyces blakesleeanus clone JGIBOUU-5L8, compl... 38 2.9 3 (AM480786) Vitis vinifera contig VV78X175822.7, whole genome... 34 3.0 5 (AC183284) Pan troglodytes BAC clone CH251-413D13 from chrom... 34 3.2 5 (CR749769) Zebrafish DNA sequence from clone DKEY-215J3 in l... 46 3.3 1 (BX539343) Zebrafish DNA sequence from clone DKEY-58K6 in li... 46 3.3 1 (BX469918) Zebrafish DNA sequence from clone DKEYP-89H8 in l... 46 3.3 1 (AL627167) Zebrafish DNA sequence from clone RP71-1H7 in lin... 46 3.3 1 (AC147448) Gallus gallus BAC clone CH261-2D18 from chromosom... 46 3.3 1 (AC132393) Mus musculus BAC clone RP23-386K20 from 1, comple... 46 3.3 1 (AP008214) Oryza sativa (japonica cultivar-group) genomic DN... 46 3.3 1 (AP008210) Oryza sativa (japonica cultivar-group) genomic DN... 46 3.3 1 (AP004636) Oryza sativa Japonica Group genomic DNA, chromoso... 46 3.3 1 (AP003872) Oryza sativa Japonica Group genomic DNA, chromoso... 46 3.3 1 (AL663021) Oryza sativa genomic DNA, chromosome 4, BAC clone... 46 3.3 1 (AC153071) Equus caballus clone CH241-77F8, complete sequence. 46 3.3 1 (AC144392) Rattus norvegicus clone CH230-446C16, WORKING DRA... 46 3.3 1 (AC118385) Rattus norvegicus clone CH230-42B13, WORKING DRAF... 46 3.3 1 (CU207244) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 3.3 1 (AC185077) Bos taurus clone CH240-191M4, WORKING DRAFT SEQUE... 46 3.3 1 (BH113676) RPCI-24-368F19.TJ RPCI-24 Mus musculus genomic cl... 46 3.3 1 (FH631715) CHO_OF4961xl19r1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 3.3 1 (FH582130) CHO_OF4670xb03r1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 3.3 1 (FH582052) CHO_OF4670xb03f1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 3.3 1 (FH171891) CHO_OF3388xf15r1.ab1 CHO_OF3 Nicotiana tabacum ge... 46 3.3 1 (FH171817) CHO_OF3388xf15f1.ab1 CHO_OF3 Nicotiana tabacum ge... 46 3.3 1 (FH101733) CHO_OF3089xe20f1.ab1 CHO_OF3 Nicotiana tabacum ge... 46 3.3 1 (ET972847) CHO_OF704xo06r1.ab1 CHO_OF Nicotiana tabacum geno... 46 3.3 1 (EJ257385) 1095349017056 Global-Ocean-Sampling_GS-27-01-01-1... 46 3.3 1 (AL322644) Tetraodon nigroviridis genome survey sequence T7 ... 46 3.3 1 (EX932554) li75e03.g7 Ginkgo microsporophyll (NYBG) Ginkgo b... 46 3.3 1 (CP000033) Lactobacillus acidophilus NCFM, complete genome. 46 3.3 1 (EK398219) 1095469528691 Global-Ocean-Sampling_GS-31-01-01-1... 36 3.3 2 (CT019168) KBrH126M02 genomic clone, KBrH (HindIII) BAC libr... 42 3.9 2 (AL433844) T3 end of clone BB0AA019G09 of library BB0AA from... 36 4.3 2 (Z98755) Human DNA sequence from clone RP1-76C18 on chromoso... 38 5.5 4 (AF098991) Caenorhabditis elegans cosmid F59H5, complete seq... 42 5.7 2 (CX577222) TTE00021982 Amplicon Express - Conjugative Form T... 34 5.9 3 (CU633203) M.truncatula DNA sequence from clone MTE1-29P1 on... 36 6.2 5 (AC159124) Medicago truncatula clone mth2-172h20, complete s... 40 6.3 6 (AM438828) Vitis vinifera contig VV78X030765.5, whole genome... 36 6.7 5 (AM468316) Vitis vinifera, whole genome shotgun sequence, co... 32 6.7 2 (AC169515) Medicago truncatula chromosome 7 BAC clone mth2-6... 34 6.9 7 (AM485394) Vitis vinifera, whole genome shotgun sequence, co... 32 7.0 2 (AC147198) Sus scrofa clone RP44-473F3, WORKING DRAFT SEQUEN... 34 7.0 8 (AM459921) Vitis vinifera contig VV78X043722.10, whole genom... 32 7.1 2 (AM433886) Vitis vinifera contig VV78X201291.7, whole genome... 32 7.1 2 (AM431633) Vitis vinifera contig VV78X073839.7, whole genome... 32 7.2 2 (AF106592) Caenorhabditis elegans cosmid D1037, complete seq... 30 7.3 5 (AM472740) Vitis vinifera contig VV78X048360.6, whole genome... 32 7.5 2 (ER305932) 1092343749458 Global-Ocean-Sampling_GS-34-01-01-1... 34 8.2 2 (EJ065623) 1095458037713 Global-Ocean-Sampling_GS-26-01-01-1... 34 8.2 2 (EI885217) CAH1-68L6TV CAA1Ba Cicer arietinum genomic clone ... 32 8.3 2 (AE000783) Borrelia burgdorferi B31, complete genome. 36 8.3 16 (AV890473) Ciona intestinalis cDNA, clone:rcicl28k07, 3' end... 34 8.3 2 (AM476800) Vitis vinifera contig VV78X169117.12, whole genom... 42 8.4 2 (AL591898) Human DNA sequence from clone RP11-409K12 on chro... 44 9.1 3 (AE017244) Mycoplasma hyopneumoniae 7448, complete genome. 36 9.2 16 (EJ103149) 1091141639243 Global-Ocean-Sampling_GS-27-01-01-1... 34 9.6 3 (BI179675) EST520620 cSTE Solanum tuberosum cDNA clone cSTE1... 36 9.9 2
>(BJ339400) Dictyostelium discoideum cDNA clone:dda65o05, 5' end, single read. Length = 568
Score = 1120 bits (565), Expect = 0.0 Identities = 568/568 (100%) Strand = Plus / Plus
Query: 1 caagnatattagtataacatgtgaccaattgaattctttctcaatgatagtagattcccc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 caagnatattagtataacatgtgaccaattgaattctttctcaatgatagtagattcccc 60
Query: 61 actcgttttagatgcaaatcatacgtttatctcaaatataagtatgaataatgtttttat 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 actcgttttagatgcaaatcatacgtttatctcaaatataagtatgaataatgtttttat 120
Query: 121 gagttgtgtaggtggatttaaatttctaatttctaaaattgaaatttcaaattttagact 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 gagttgtgtaggtggatttaaatttctaatttctaaaattgaaatttcaaattttagact 180
Query: 181 agaatcattttcaaaaccttcaactataagtttatactaccaaagtgattgtacaattgt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 agaatcattttcaaaaccttcaactataagtttatactaccaaagtgattgtacaattgt 240
Query: 241 aaatggtacttttatatctagtgtattcaaacaagagtcaagtatgttttatttggaatc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 aaatggtacttttatatctagtgtattcaaacaagagtcaagtatgttttatttggaatc 300
Query: 301 aagtgaattgaaggctatagattgtcaatttaaagatagtactaccaatattctaatggc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 aagtgaattgaaggctatagattgtcaatttaaagatagtactaccaatattctaatggc 360
Query: 361 aagagattccaatacaatgtttcaatcttcaaatttttcaaatttaataccatatagttc 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 aagagattccaatacaatgtttcaatcttcaaatttttcaaatttaataccatatagttc 420
Query: 421 ttttgattcatactcaattttttattctataaagggttcaatgctatttattggatgcaa 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 ttttgattcatactcaattttttattctataaagggttcaatgctatttattggatgcaa 480
Query: 481 ttttaaccaaattcaaacaacatcttcattgatttcaacaacattttcagattatctaat 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 ttttaaccaaattcaaacaacatcttcattgatttcaacaacattttcagattatctaat 540
Query: 541 gttaaagaattcaagatttgaaagagtt 568 |||||||||||||||||||||||||||| Sbjct: 541 gttaaagaattcaagatttgaaagagtt 568
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 1,241,106,822 Number of extensions: 75975911 Number of successful extensions: 6574240 Number of sequences better than 10.0: 95 Length of query: 1287 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 1263 Effective length of database: 97,308,875,965 Effective search space: 122901110343795 Effective search space used: 122901110343795 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 6.30 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
1 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |