Contig-U11539-1
Contig ID Contig-U11539-1
Contig update 2002.12.18
Contig sequence
>Contig-U11539-1 (Contig-U11539-1Q) /CSM_Contig/Contig-U11539-1Q.Seq.d
CAAGNATATTAGTATAACATGTGACCAATTGAATTCTTTCTCAATGATAG
TAGATTCCCCACTCGTTTTAGATGCAAATCATACGTTTATCTCAAATATA
AGTATGAATAATGTTTTTATGAGTTGTGTAGGTGGATTTAAATTTCTAAT
TTCTAAAATTGAAATTTCAAATTTTAGACTAGAATCATTTTCAAAACCTT
CAACTATAAGTTTATACTACCAAAGTGATTGTACAATTGTAAATGGTACT
TTTATATCTAGTGTATTCAAACAAGAGTCAAGTATGTTTTATTTGGAATC
AAGTGAATTGAAGGCTATAGATTGTCAATTTAAAGATAGTACTACCAATA
TTCTAATGGCAAGAGATTCCAATACAATGTTTCAATCTTCAAATTTTTCA
AATTTAATACCATATAGTTCTTTTGATTCATACTCAATTTTTTATTCTAT
AAAGGGTTCAATGCTATTTATTGGATGCAATTTTAACCAAATTCAAACAA
CATCTTCATTGATTTCAACAACATTTTCAGATTATCTAATGTTAAAGAAT
TCAAGATTTGAAAGAGTTNNNNNNNNN----------NNNNNNNNNNTAT
GGTTATTTAGAAAATTAAATTCAAATTTTAAGTTACACAATTATTTAAAA
AGAAATTTAAAAAAGAAAAGAAATTTAAAGAAATCATCAACAACTCAGTT
TAATTACTTTATTAGATCAAGATGGCAATTATTTCAAATCTTTATTATAC
CATTAATATTCAATTCATTTACATTGATAATACCAAAGAAAATTAAAGAT
CAAACATTATTATTAGTAGATTTTTCAATTTTATTTGGATCATGGCAGAG
TATTCTTCAAATTTTCATTTCAGTTTTAATAATAATATTTGTAATAGTCA
TTTTAGTGTTAAATCATTTTATTTTCAAAAAGGGTAAATTAAAGTTGTGG
GAATTGATTATTATTGCAAAATCATTTTTATTTTCAATTCTATCAATATC
ATTGATTTTTAATGATTTTTATACACCTTCAATTATTTTAATTCAAATTG
TTTATTCAACTATTTACTTTTTATTAAATCCAAAAAAGAAAGGAAATTCA
AAGAAATCATCGAAAATTGATAATAATAATTTTATAAATTTAATTCAACT
ATTAATCTTTCTTACTGTAAATTCAAAATTATTCCAACAAATTGCTCCTA
ATGTCTTTGGGTTAATTTTAACCATTTTAATTATTATCTCAACCTTTGAT
TGCAGTAAAAAAAAATAAAACATTTAGNCTTTAATTA

Gap gap included
Contig length 1277
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 1
Number of EST 2
Link to clone list U11539
List of clone(s)

est1=AHR124F,1,568
est2=AHR124Z,569,1259
Translated Amino Acid sequence
KXISITCDQLNSFSMIVDSPLVLDANHTFISNISMNNVFMSCVGGFKFLISKIEISNFRL
ESFSKPSTISLYYQSDCTIVNGTFISSVFKQESSMFYLESSELKAIDCQFKDSTTNILMA
RDSNTMFQSSNFSNLIPYSSFDSYSIFYSIKGSMLFIGCNFNQIQTTSSLISTTFSDYLM
LKNSRFERVXXX---

---XXXXWLFRKLNSNFKLHNYLKRNLKKKRNLKKSSTTQFNYFIRSRWQLFQIFIIPLI
FNSFTLIIPKKIKDQTLLLVDFSILFGSWQSILQIFISVLIIIFVIVILVLNHFIFKKGK
LKLWELIIIAKSFLFSILSISLIFNDFYTPSIILIQIVYSTIYFLLNPKKKGNSKKSSKI
DNNNFINLIQLLIFLTVNSKLFQQIAPNVFGLILTILIIISTFDCSKKK*ni*xli


Translated Amino Acid sequence (All Frames)
Frame A:
qxy*ynm*piefflndsrfptrfrcksyvylkykye*cfyelcrwi*isnf*n*nfkf*t
riifktfnykfilpk*lynckwyfyi*ciqtrvkyvlfgik*iegyrlsi*r*yyqysng
krfqynvsifkffkfnti*ff*filnflfykgfnaiywmqf*pnsnnifidfnnifrlsn
vkefki*ksxxx---

---XXXXWLFRKLNSNFKLHNYLKRNLKKKRNLKKSSTTQFNYFIRSRWQLFQIFIIPLI
FNSFTLIIPKKIKDQTLLLVDFSILFGSWQSILQIFISVLIIIFVIVILVLNHFIFKKGK
LKLWELIIIAKSFLFSILSISLIFNDFYTPSIILIQIVYSTIYFLLNPKKKGNSKKSSKI
DNNNFINLIQLLIFLTVNSKLFQQIAPNVFGLILTILIIISTFDCSKKK*ni*xli

Frame B:
KXISITCDQLNSFSMIVDSPLVLDANHTFISNISMNNVFMSCVGGFKFLISKIEISNFRL
ESFSKPSTISLYYQSDCTIVNGTFISSVFKQESSMFYLESSELKAIDCQFKDSTTNILMA
RDSNTMFQSSNFSNLIPYSSFDSYSIFYSIKGSMLFIGCNFNQIQTTSSLISTTFSDYLM
LKNSRFERVXXX---

---xxxygylen*iqilsytii*kei*krkei*rnhqqlslitlldqdgnyfksllyh*y
sihlh**yqrklkikhyy**ifqfyldhgrvffkfsfqf***yl**sf*c*iilfskrvn
*scgn*lllqnhfyfqfyqyh*flmifihlqlf*fklfiqlftfy*iqkrkeiqrnhrkl
iiiil*i*fny*sfll*iqnysnklllmslg*f*pf*llsqpliavkknktfxl*l

Frame C:
xilv*hvtn*ilsq***iphsf*mqiirlsqi*v*imfl*vv*vdlnf*flklkfqild*
nhfqnlql*vyttkvivql*mvllylvysnksqvcfiwnqvn*rl*ivnlkivlpif*wq
eipiqcfnlqifqi*yhivllihtqffil*rvqcylldailtkfkqhlh*fqqhfqii*c
*riqdlkexxx---

---xxxmvi*kikfkf*vtqlfkkkfkkekkfkeiinnsv*lly*ikmaiisnlyytini
qfiyidntken*rsniiisrffnfiwimaeyssnfhfsfnnnicnshfsvksfyfqkg*i
kvvgidyyckiififnsiniidf**flytfnyfnsnclfnyllfikskkerkfkeiien*
***fykfnstinlsyckfkiiptncs*clwvnfnhfnyylnl*lq*kkikhlxfn

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U11539-1 (Contig-U11539-1Q)
/CSM_Contig/Contig-U11539-1Q.Seq.d
(1287 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U11539-1 (Contig-U11539-1Q) /CSM_Contig/Conti... 1138 0.0
Contig-U14236-1 (Contig-U14236-1Q) /CSM_Contig/Conti... 40 0.006
Contig-U12353-1 (Contig-U12353-1Q) /CSM_Contig/Conti... 38 0.023
Contig-U12197-1 (Contig-U12197-1Q) /CSM_Contig/Conti... 38 0.023
Contig-U11773-1 (Contig-U11773-1Q) /CSM_Contig/Conti... 38 0.023
Contig-U10408-1 (Contig-U10408-1Q) /CSM_Contig/Conti... 38 0.023
Contig-U04633-1 (Contig-U04633-1Q) /CSM_Contig/Conti... 38 0.023
Contig-U00724-1 (Contig-U00724-1Q) /CSM_Contig/Conti... 38 0.023
Contig-U14763-1 (Contig-U14763-1Q) /CSM_Contig/Conti... 36 0.091
Contig-U14686-1 (Contig-U14686-1Q) /CSM_Contig/Conti... 36 0.091

>Contig-U11539-1 (Contig-U11539-1Q) /CSM_Contig/Contig-U11539-1Q.Seq.d
Length = 1287

Score = 1138 bits (574), Expect = 0.0
Identities = 595/604 (98%)
Strand = Plus / Plus


Query: 684 tcatcaacaactcagtttaattactttattagatcaagatggcaattatttcaaatcttt 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tcatcaacaactcagtttaattactttattagatcaagatggcaattatttcaaatcttt 743


Query: 744 attataccattaatattcaattcatttacattgataataccaaagaaaattaaagatcaa 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 attataccattaatattcaattcatttacattgataataccaaagaaaattaaagatcaa 803


Query: 804 acattattattagtagatttttcaattttatttggatcatggcagagtattcttcaaatt 863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 acattattattagtagatttttcaattttatttggatcatggcagagtattcttcaaatt 863


Query: 864 ttcatttcagttttaataataatatttgtaatagtcattttagtgttaaatcattttatt 923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 ttcatttcagttttaataataatatttgtaatagtcattttagtgttaaatcattttatt 923


Query: 924 ttcaaaaagggtaaattaaagttgtgggaattgattattattgcaaaatcatttttattt 983
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924 ttcaaaaagggtaaattaaagttgtgggaattgattattattgcaaaatcatttttattt 983


Query: 984 tcaattctatcaatatcattgatttttaatgatttttatacaccttcaattattttaatt 1043
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 984 tcaattctatcaatatcattgatttttaatgatttttatacaccttcaattattttaatt 1043


Query: 1044 caaattgtttattcaactatttactttttattaaatccaaaaaagaaaggaaattcaaag 1103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1044 caaattgtttattcaactatttactttttattaaatccaaaaaagaaaggaaattcaaag 1103


Query: 1104 aaatcatcgaaaattgataataataattttataaatttaattcaactattaatctttctt 1163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1104 aaatcatcgaaaattgataataataattttataaatttaattcaactattaatctttctt 1163


Query: 1164 actgtaaattcaaaattattccaacaaattgctcctaatgtctttgggttaattttaacc 1223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1164 actgtaaattcaaaattattccaacaaattgctcctaatgtctttgggttaattttaacc 1223


Query: 1224 attttaattattatctcaacctttgattgcagtnnnnnnnnntaaaacatttagncttta 1283
||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1224 attttaattattatctcaacctttgattgcagtaaaaaaaaataaaacatttagncttta 1283


Query: 1284 atta 1287
||||
Sbjct: 1284 atta 1287


Score = 1120 bits (565), Expect = 0.0
Identities = 568/568 (100%)
Strand = Plus / Plus


Query: 1 caagnatattagtataacatgtgaccaattgaattctttctcaatgatagtagattcccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caagnatattagtataacatgtgaccaattgaattctttctcaatgatagtagattcccc 60


Query: 61 actcgttttagatgcaaatcatacgtttatctcaaatataagtatgaataatgtttttat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 actcgttttagatgcaaatcatacgtttatctcaaatataagtatgaataatgtttttat 120


Query: 121 gagttgtgtaggtggatttaaatttctaatttctaaaattgaaatttcaaattttagact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gagttgtgtaggtggatttaaatttctaatttctaaaattgaaatttcaaattttagact 180


Query: 181 agaatcattttcaaaaccttcaactataagtttatactaccaaagtgattgtacaattgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 agaatcattttcaaaaccttcaactataagtttatactaccaaagtgattgtacaattgt 240


Query: 241 aaatggtacttttatatctagtgtattcaaacaagagtcaagtatgttttatttggaatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaatggtacttttatatctagtgtattcaaacaagagtcaagtatgttttatttggaatc 300


Query: 301 aagtgaattgaaggctatagattgtcaatttaaagatagtactaccaatattctaatggc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aagtgaattgaaggctatagattgtcaatttaaagatagtactaccaatattctaatggc 360


Query: 361 aagagattccaatacaatgtttcaatcttcaaatttttcaaatttaataccatatagttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aagagattccaatacaatgtttcaatcttcaaatttttcaaatttaataccatatagttc 420


Query: 421 ttttgattcatactcaattttttattctataaagggttcaatgctatttattggatgcaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ttttgattcatactcaattttttattctataaagggttcaatgctatttattggatgcaa 480


Query: 481 ttttaaccaaattcaaacaacatcttcattgatttcaacaacattttcagattatctaat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttttaaccaaattcaaacaacatcttcattgatttcaacaacattttcagattatctaat 540


Query: 541 gttaaagaattcaagatttgaaagagtt 568
||||||||||||||||||||||||||||
Sbjct: 541 gttaaagaattcaagatttgaaagagtt 568


Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus


Query: 1082 aaaaaagaaaggaaattcaaagaaatcatc 1111
|||||||||| |||||| ||||||||||||
Sbjct: 659 aaaaaagaaaagaaatttaaagaaatcatc 688


>Contig-U14236-1 (Contig-U14236-1Q) /CSM_Contig/Contig-U14236-1Q.Seq.d
Length = 660

Score = 40.1 bits (20), Expect = 0.006
Identities = 20/20 (100%)
Strand = Plus / Minus


Query: 150 tttctaaaattgaaatttca 169
||||||||||||||||||||
Sbjct: 71 tttctaaaattgaaatttca 52


>Contig-U12353-1 (Contig-U12353-1Q) /CSM_Contig/Contig-U12353-1Q.Seq.d
Length = 860

Score = 38.2 bits (19), Expect = 0.023
Identities = 28/31 (90%)
Strand = Plus / Plus


Query: 785 aaagaaaattaaagatcaaacattattatta 815
||||||||||||||||| | ||| |||||||
Sbjct: 799 aaagaaaattaaagatccatcatcattatta 829


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 50,135
Number of Sequences: 6905
Number of extensions: 50135
Number of successful extensions: 4534
Number of sequences better than 10.0: 487
length of query: 1287
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1271
effective length of database: 5,564,391
effective search space: 7072340961
effective search space used: 7072340961
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.25
Homology vs DNA
Query= Contig-U11539-1 (Contig-U11539-1Q) /CSM_Contig/Contig-U11539-1Q.Seq.d
(1287 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ339400) Dictyostelium discoideum cDNA clone:dda65o05, 5' ... 1120 0.0 1
(BJ357933) Dictyostelium discoideum cDNA clone:dda65o05, 3' ... 353 e-166 4
(AC084357) Homo sapiens 12q BAC RP11-415I12 (Roswell Park Ca... 36 0.12 2
(DH743907) Rattus norvegicus DNA, BAC clone: RNB1-319D07, 5'... 40 0.14 3
(EG391324) BG01028B2G10.r1 BG01 - normalized library Leymus ... 50 0.21 1
(EG591939) F0377R one day old larvae library Antheraea mylit... 34 0.36 3
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome. 44 0.46 17
(AC219457) Bos taurus clone CH240-341D15, WORKING DRAFT SEQU... 34 0.46 2
(EG591885) F0325R one day old larvae library Antheraea mylit... 34 0.52 3
(ER291662) 1092343606840 Global-Ocean-Sampling_GS-34-01-01-1... 38 0.60 2
(EJ530738) 1092955223214 Global-Ocean-Sampling_GS-29-01-01-1... 38 0.60 2
(EJ273117) 1095366000373 Global-Ocean-Sampling_GS-27-01-01-1... 38 0.60 2
(EG594080) E0960R one day old larvae library Antheraea mylit... 34 0.62 3
(CP000013) Borrelia garinii PBi, complete genome. 34 0.67 17
(AL445564) Mycoplasma pulmonis (strain UAB CTIP) complete ge... 34 0.77 12
(AP008217) Oryza sativa (japonica cultivar-group) genomic DN... 48 0.83 1
(AM464694) Vitis vinifera contig VV78X248540.2, whole genome... 48 0.83 1
(AC136447) Oryza sativa Japonica Group chromosome 11 clone O... 48 0.83 1
(AC133004) Oryza sativa Japonica Group chromosome 11 clone O... 48 0.83 1
(EA724658) Sequence 103537 from patent US 7365185. 48 0.83 1
(DX549146) GH_MBb0026A20r GH_MBb Gossypium hirsutum genomic ... 48 0.83 1
(CU145667) Equus caballus GSS, BAC clone CH241-270G20, T7 en... 48 0.83 1
(CU113915) Equus caballus GSS, BAC clone CH241-224A5, T7 end... 48 0.83 1
(AC189734) Trichinella spiralis BAC clone TS195-20H12 from c... 34 0.86 8
(AE017245) Mycoplasma synoviae 53, complete genome. 34 0.91 16
(EA689471) Sequence 68350 from patent US 7365185. 46 0.93 2
(AM481589) Vitis vinifera contig VV79X004152.2, whole genome... 36 0.97 4
(AC231365) Medicago truncatula clone mth2-121k13, WORKING DR... 32 1.7 6
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 36 2.0 16
(AC024810) Caenorhabditis elegans cosmid Y54E10A, complete s... 44 2.2 4
(EX336114) GQ03001.SP6_N09 GQ030 - Xylem planings - daytime ... 34 2.2 2
(EX333203) GQ02905.SP6_B17 GQ029 - Xylem scrapings - AT NITE... 34 2.2 2
(AC186642) Phycomyces blakesleeanus clone JGIBOUU-5L8, compl... 38 2.9 3
(AM480786) Vitis vinifera contig VV78X175822.7, whole genome... 34 3.0 5
(AC183284) Pan troglodytes BAC clone CH251-413D13 from chrom... 34 3.2 5
(CR749769) Zebrafish DNA sequence from clone DKEY-215J3 in l... 46 3.3 1
(BX539343) Zebrafish DNA sequence from clone DKEY-58K6 in li... 46 3.3 1
(BX469918) Zebrafish DNA sequence from clone DKEYP-89H8 in l... 46 3.3 1
(AL627167) Zebrafish DNA sequence from clone RP71-1H7 in lin... 46 3.3 1
(AC147448) Gallus gallus BAC clone CH261-2D18 from chromosom... 46 3.3 1
(AC132393) Mus musculus BAC clone RP23-386K20 from 1, comple... 46 3.3 1
(AP008214) Oryza sativa (japonica cultivar-group) genomic DN... 46 3.3 1
(AP008210) Oryza sativa (japonica cultivar-group) genomic DN... 46 3.3 1
(AP004636) Oryza sativa Japonica Group genomic DNA, chromoso... 46 3.3 1
(AP003872) Oryza sativa Japonica Group genomic DNA, chromoso... 46 3.3 1
(AL663021) Oryza sativa genomic DNA, chromosome 4, BAC clone... 46 3.3 1
(AC153071) Equus caballus clone CH241-77F8, complete sequence. 46 3.3 1
(AC144392) Rattus norvegicus clone CH230-446C16, WORKING DRA... 46 3.3 1
(AC118385) Rattus norvegicus clone CH230-42B13, WORKING DRAF... 46 3.3 1
(CU207244) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 3.3 1
(AC185077) Bos taurus clone CH240-191M4, WORKING DRAFT SEQUE... 46 3.3 1
(BH113676) RPCI-24-368F19.TJ RPCI-24 Mus musculus genomic cl... 46 3.3 1
(FH631715) CHO_OF4961xl19r1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 3.3 1
(FH582130) CHO_OF4670xb03r1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 3.3 1
(FH582052) CHO_OF4670xb03f1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 3.3 1
(FH171891) CHO_OF3388xf15r1.ab1 CHO_OF3 Nicotiana tabacum ge... 46 3.3 1
(FH171817) CHO_OF3388xf15f1.ab1 CHO_OF3 Nicotiana tabacum ge... 46 3.3 1
(FH101733) CHO_OF3089xe20f1.ab1 CHO_OF3 Nicotiana tabacum ge... 46 3.3 1
(ET972847) CHO_OF704xo06r1.ab1 CHO_OF Nicotiana tabacum geno... 46 3.3 1
(EJ257385) 1095349017056 Global-Ocean-Sampling_GS-27-01-01-1... 46 3.3 1
(AL322644) Tetraodon nigroviridis genome survey sequence T7 ... 46 3.3 1
(EX932554) li75e03.g7 Ginkgo microsporophyll (NYBG) Ginkgo b... 46 3.3 1
(CP000033) Lactobacillus acidophilus NCFM, complete genome. 46 3.3 1
(EK398219) 1095469528691 Global-Ocean-Sampling_GS-31-01-01-1... 36 3.3 2
(CT019168) KBrH126M02 genomic clone, KBrH (HindIII) BAC libr... 42 3.9 2
(AL433844) T3 end of clone BB0AA019G09 of library BB0AA from... 36 4.3 2
(Z98755) Human DNA sequence from clone RP1-76C18 on chromoso... 38 5.5 4
(AF098991) Caenorhabditis elegans cosmid F59H5, complete seq... 42 5.7 2
(CX577222) TTE00021982 Amplicon Express - Conjugative Form T... 34 5.9 3
(CU633203) M.truncatula DNA sequence from clone MTE1-29P1 on... 36 6.2 5
(AC159124) Medicago truncatula clone mth2-172h20, complete s... 40 6.3 6
(AM438828) Vitis vinifera contig VV78X030765.5, whole genome... 36 6.7 5
(AM468316) Vitis vinifera, whole genome shotgun sequence, co... 32 6.7 2
(AC169515) Medicago truncatula chromosome 7 BAC clone mth2-6... 34 6.9 7
(AM485394) Vitis vinifera, whole genome shotgun sequence, co... 32 7.0 2
(AC147198) Sus scrofa clone RP44-473F3, WORKING DRAFT SEQUEN... 34 7.0 8
(AM459921) Vitis vinifera contig VV78X043722.10, whole genom... 32 7.1 2
(AM433886) Vitis vinifera contig VV78X201291.7, whole genome... 32 7.1 2
(AM431633) Vitis vinifera contig VV78X073839.7, whole genome... 32 7.2 2
(AF106592) Caenorhabditis elegans cosmid D1037, complete seq... 30 7.3 5
(AM472740) Vitis vinifera contig VV78X048360.6, whole genome... 32 7.5 2
(ER305932) 1092343749458 Global-Ocean-Sampling_GS-34-01-01-1... 34 8.2 2
(EJ065623) 1095458037713 Global-Ocean-Sampling_GS-26-01-01-1... 34 8.2 2
(EI885217) CAH1-68L6TV CAA1Ba Cicer arietinum genomic clone ... 32 8.3 2
(AE000783) Borrelia burgdorferi B31, complete genome. 36 8.3 16
(AV890473) Ciona intestinalis cDNA, clone:rcicl28k07, 3' end... 34 8.3 2
(AM476800) Vitis vinifera contig VV78X169117.12, whole genom... 42 8.4 2
(AL591898) Human DNA sequence from clone RP11-409K12 on chro... 44 9.1 3
(AE017244) Mycoplasma hyopneumoniae 7448, complete genome. 36 9.2 16
(EJ103149) 1091141639243 Global-Ocean-Sampling_GS-27-01-01-1... 34 9.6 3
(BI179675) EST520620 cSTE Solanum tuberosum cDNA clone cSTE1... 36 9.9 2

>(BJ339400) Dictyostelium discoideum cDNA clone:dda65o05, 5' end,
single read.
Length = 568

Score = 1120 bits (565), Expect = 0.0
Identities = 568/568 (100%)
Strand = Plus / Plus


Query: 1 caagnatattagtataacatgtgaccaattgaattctttctcaatgatagtagattcccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caagnatattagtataacatgtgaccaattgaattctttctcaatgatagtagattcccc 60


Query: 61 actcgttttagatgcaaatcatacgtttatctcaaatataagtatgaataatgtttttat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 actcgttttagatgcaaatcatacgtttatctcaaatataagtatgaataatgtttttat 120


Query: 121 gagttgtgtaggtggatttaaatttctaatttctaaaattgaaatttcaaattttagact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gagttgtgtaggtggatttaaatttctaatttctaaaattgaaatttcaaattttagact 180


Query: 181 agaatcattttcaaaaccttcaactataagtttatactaccaaagtgattgtacaattgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 agaatcattttcaaaaccttcaactataagtttatactaccaaagtgattgtacaattgt 240


Query: 241 aaatggtacttttatatctagtgtattcaaacaagagtcaagtatgttttatttggaatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaatggtacttttatatctagtgtattcaaacaagagtcaagtatgttttatttggaatc 300


Query: 301 aagtgaattgaaggctatagattgtcaatttaaagatagtactaccaatattctaatggc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aagtgaattgaaggctatagattgtcaatttaaagatagtactaccaatattctaatggc 360


Query: 361 aagagattccaatacaatgtttcaatcttcaaatttttcaaatttaataccatatagttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aagagattccaatacaatgtttcaatcttcaaatttttcaaatttaataccatatagttc 420


Query: 421 ttttgattcatactcaattttttattctataaagggttcaatgctatttattggatgcaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ttttgattcatactcaattttttattctataaagggttcaatgctatttattggatgcaa 480


Query: 481 ttttaaccaaattcaaacaacatcttcattgatttcaacaacattttcagattatctaat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttttaaccaaattcaaacaacatcttcattgatttcaacaacattttcagattatctaat 540


Query: 541 gttaaagaattcaagatttgaaagagtt 568
||||||||||||||||||||||||||||
Sbjct: 541 gttaaagaattcaagatttgaaagagtt 568

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,241,106,822
Number of extensions: 75975911
Number of successful extensions: 6574240
Number of sequences better than 10.0: 95
Length of query: 1287
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1263
Effective length of database: 97,308,875,965
Effective search space: 122901110343795
Effective search space used: 122901110343795
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.30
Homology vs Protein
Query= Contig-U11539-1 (Contig-U11539-1Q) /CSM_Contig/Contig-U11539-1Q.Seq.d
(1287 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

BC061423_1(BC061423|pid:none) Xenopus tropicalis serine (or cyst... 35 7.7

>BC061423_1(BC061423|pid:none) Xenopus tropicalis serine (or
cysteine) proteinase inhibitor, clade E (nexin,
plasminogen activator inhibitor type 1), member 2, mRNA
(cDNA clone MGC:76024 IMAGE:5384821), complete cds.
Length = 315

Score = 34.7 bits (78), Expect = 7.7
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Frame = +2

Query: 233 TIVNGTFISSVFKQESSMFYLES----SELKAIDCQFKDSTTNIL 355
T NG F SSVFK ESS Y S+++++D Q K++ +I+
Sbjct: 108 TSANGVFASSVFKMESSFVYKNKDVFHSDVRSVDFQEKNTAASII 152

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,355,271,739
Number of extensions: 22717359
Number of successful extensions: 30989
Number of sequences better than 10.0: 1
Number of HSP's gapped: 30976
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 1,051,180,864
Length adjustment: 131
Effective length of query: 298
Effective length of database: 627,191,635
Effective search space: 186903107230
Effective search space used: 186903107230
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.88 gvh: 0.45 alm: 0.01 top: 0.33 tms: 0.47 mit: 0.23 mip: 0.00
nuc: 0.18 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

56.0 %: plasma membrane
40.0 %: endoplasmic reticulum
4.0 %: mitochondrial

>> prediction for Contig-U11539-1 is pla

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 1
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0