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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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Contig-U11532-1
Contig ID Contig-U11532-1
Contig update 2002.12.18
Contig sequence 
>Contig-U11532-1 (Contig-U11532-1Q) /CSM_Contig/Contig-U11532-1Q.Seq.d
ATCCACTAATATACAATGCTGGTGATAAATCAGTAGTATCAGTAATTGTC
GTTGTTGTTGTTGTTGATGATGATTCTCCTGATACTGTAGATGATGATCC
ATTATTTGTTCTATTATTGTTATTATTGTTATTGTTATTTGATGTTGAAT
TTTGATCATTTTCATCATATGTTCCTAATATATTATCATCATCATTTTCA
TCATAAGATTTTTCATCTTCAATTAATCTTATACTGTGAGTATTTTCTGT
ATCATCATCCATATTACTAGCACTTCTTCTTGATTTATTATTATTATTAT
CATCTTCATCTTCATCATCATTTCTACGTGATGATCCATAATTACTATCA
CTATCTTCATGATTATTCGATTCACTACGTGTATTCATAGTTTCATCATT
TTCATTTCTGTTTCTATATTTATTATCTTCTATTTCATCTTCTCCAAGTT
CATCTTCTGTATGTTTCTTTTCATCTTTAAAGTCTCCATATATATCATAA
TCTTCCATTATTCTATTTTATTTTATTTTCTTTATAAAAAATATATTATT
ATTATTGTTATTATTATATTTGATCGGTAATATTTGTTTATAAAGAAATG
AAAAAAAAAA----------AGAAGAAGCGAAAGTNCAAGAGATAAAGAA
AGAGATGATAGATCAGATAATAGAAGTTCTAGAGATCATTACGATAGAGA
TTCAACAAGAGATAGAGAAACATCATCCTCAAGTGGTAGTGGTAAAAGAG
AGAATGACTCTTATCCATCAAGTAAAAGCGACTCAAATAGAGATAGAGAA
AATAGGGATTATTCTTCAACAACTAGTGGAAGTAAACGAGAAAGTAAGGA
TAGAGCATCAGATAGTAATCAATCAAGTAGTGGTGGTAGAAAAGATTCTG
ATCATTCATACTCATCAAGTGGTAGTGGCAACAGGGACAGAGATAGAGAT
AGAGATAGAGATACCTCATCAAATGCCAGAAAAGAAACCTCTGATAACAG
AGACAGAGACTCATCCTCAACCTCTACCAATAGTAGAGATAGATCAGATA
AAAATGAAAACACTAGAACTAGAGATTCAAATAAAAAAGATGAATCACAA
AGAAGTGAACCATCATCATCATCATCATCATCAAGAAAGAAAGAAGATTC
AAAAGACTCAACAACATCATCTTCAACATCATCGAATAATGAAAGAGATT
CAGATAAATCCTCAACAAGAAATGAAAGAGAACAAAGTGGTAGATCCTCT
TCAAAATCTTCAAATGTATCCCCTTCTTCTTCCTCTTCCTCATCAACACC
ATCACAATCTAGAGAGTAAAT
Gap gap included
Contig length 1311
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 3
Number of EST 6
Link to clone list U11532
List of clone(s) 

est1=CHJ819F,1,601
est2=AHQ720F,11,591
est3=AHL315F,461,610
est4=AHL315Z,461,570
est5=AHQ720Z,611,1298
est6=CHJ819Z,731,1312
Translated Amino Acid sequence 
ih*ytmlvinq*yq*lslllllmmillil*mmihylfyycyycycylmlnfdhfhhmfli
yyhhhfhhkifhlqlilyceyflyhhpyy*hffliyyyyyhlhlhhhfyvmihnyyhylh
dysihyvys*fhhfhfcfyiyyllfhllqvhllyvsfhl*slhiyhnlplfyfilfsl*k
iyyyycyyyi*SVIFVYKEMKKK---

---EEAKVQEIKKEMIDQIIEVLEIITIEIQQEIEKHHPQVVVVKERMTLIHQVKATQIE
IEKIGIILQQLVEVNEKVRIEHQIVINQVVVVEKILIIHTHQVVVATGTEIEIEIEIPHQ
MPEKKPLITETETHPQPLPIVEIDQIKMKTLELEIQIKKMNHKEVNHHHHHHHQERKKIQ
KTQQHHLQHHRIMKEIQINPQQEMKENKVVDPLQNLQMYPLLLPLPHQHHHNLESK
Translated Amino Acid sequence (All Frames) 
Frame A:
ih*ytmlvinq*yq*lslllllmmillil*mmihylfyycyycycylmlnfdhfhhmfli
yyhhhfhhkifhlqlilyceyflyhhpyy*hffliyyyyyhlhlhhhfyvmihnyyhylh
dysihyvys*fhhfhfcfyiyyllfhllqvhllyvsfhl*slhiyhnlplfyfilfsl*k
iyyyycyyyi*SVIFVYKEMKKK---

---rrsesxrdkerddrsdnrssrdhydrdstrdretssssgsgkrendsypssksdsnr
drenrdyssttsgskreskdrasdsnqsssggrkdsdhsysssgsgnrdrdrdrdrdtss
narketsdnrdrdssststnsrdrsdknentrtrdsnkkdesqrsepsssssssrkkeds
kdsttssstssnnerdsdksstrnereqsgrssskssnvspssssssstpsqsre*

Frame B:
stniqcw**issisncrcccc***fs*ycr**siicsiiviivivi*c*iliifiics*y
iiiiifiirffifn*sytvsifciiihitstss*fiiiiiififiiist**siititifm
iirfttcihsfiifisvsifiifyfifskfifcmflfifkvsiyiiifhysilfyflykk
yiiiiviiifdr*ylfikk*kkk---

---EEAKVQEIKKEMIDQIIEVLEIITIEIQQEIEKHHPQVVVVKERMTLIHQVKATQIE
IEKIGIILQQLVEVNEKVRIEHQIVINQVVVVEKILIIHTHQVVVATGTEIEIEIEIPHQ
MPEKKPLITETETHPQPLPIVEIDQIKMKTLELEIQIKKMNHKEVNHHHHHHHQERKKIQ
KTQQHHLQHHRIMKEIQINPQQEMKENKVVDPLQNLQMYPLLLPLPHQHHHNLESK

Frame C:
pliynagdksvvsvivvvvvvdddspdtvdddplfvlllllllllfdvef*sfssyvpni
lsssfss*dfsssinlil*vfsvsssillallldlllllsssssssflrddp*llslss*
lfdslrvfivssfsflflyllssissspssssvcffsslkspyis*ssiilfyfiffikn
illlllllylignicl*rnekk---

---kkrkxkr*rkr**ir**kf*rslr*rfnkr*rniilkw*w*kre*llsik*krlk*r
*rk*glffnn*wk*trk*g*sir**sik*ww*krf*sfilikw*wqqgqr*r*r*rylik
cqkrnl**qrqrlilnlyq**r*ir*k*kh*n*rfk*kr*itkk*tiiiiiiikkerrfk
rlnniifniie**krfr*ilnkk*krtkw*ilfkifkcipffflflintiti*rvn
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U11532-1 (Contig-U11532-1Q)
/CSM_Contig/Contig-U11532-1Q.Seq.d
         (1321 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U11532-1 (Contig-U11532-1Q) /CSM_Contig/Conti...   712  0.0
Contig-U12582-1 (Contig-U12582-1Q) /CSM_Contig/Conti...    52  2e-06
Contig-U11464-1 (Contig-U11464-1Q) /CSM_Contig/Conti...    52  2e-06
Contig-U09221-1 (Contig-U09221-1Q) /CSM_Contig/Conti...    52  2e-06
Contig-U12411-1 (Contig-U12411-1Q) /CSM_Contig/Conti...    50  6e-06
Contig-U11450-1 (Contig-U11450-1Q) /CSM_Contig/Conti...    50  6e-06
Contig-U08378-1 (Contig-U08378-1Q) /CSM_Contig/Conti...    50  6e-06
Contig-U02603-1 (Contig-U02603-1Q) /CSM_Contig/Conti...    50  6e-06
Contig-U01465-1 (Contig-U01465-1Q) /CSM_Contig/Conti...    50  6e-06
Contig-U11728-1 (Contig-U11728-1Q) /CSM_Contig/Conti...    44  4e-04

>Contig-U11532-1 (Contig-U11532-1Q) /CSM_Contig/Contig-U11532-1Q.Seq.d
          Length = 1321

 Score =  712 bits (359), Expect = 0.0
 Identities = 359/359 (100%)
 Strand = Plus / Plus

                                                                       
Query: 155 atcattttcatcatatgttcctaatatattatcatcatcattttcatcataagatttttc 214
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 atcattttcatcatatgttcctaatatattatcatcatcattttcatcataagatttttc 214

                                                                       
Query: 215 atcttcaattaatcttatactgtgagtattttctgtatcatcatccatattactagcact 274
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atcttcaattaatcttatactgtgagtattttctgtatcatcatccatattactagcact 274

                                                                       
Query: 275 tcttcttgatttattattattattatcatcttcatcttcatcatcatttctacgtgatga 334
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tcttcttgatttattattattattatcatcttcatcttcatcatcatttctacgtgatga 334

                                                                       
Query: 335 tccataattactatcactatcttcatgattattcgattcactacgtgtattcatagtttc 394
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tccataattactatcactatcttcatgattattcgattcactacgtgtattcatagtttc 394

                                                                       
Query: 395 atcattttcatttctgtttctatatttattatcttctatttcatcttctccaagttcatc 454
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 atcattttcatttctgtttctatatttattatcttctatttcatcttctccaagttcatc 454

                                                                      
Query: 455 ttctgtatgtttcttttcatctttaaagtctccatatatatcataatcttccattattc 513
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ttctgtatgtttcttttcatctttaaagtctccatatatatcataatcttccattattc 513


 Score =  624 bits (315), Expect = e-179
 Identities = 318/318 (100%)
 Strand = Plus / Plus

                                                                       
Query: 621 agaagaagcgaaagtncaagagataaagaaagagatgatagatcagataatagaagttct 680
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agaagaagcgaaagtncaagagataaagaaagagatgatagatcagataatagaagttct 680

                                                                       
Query: 681 agagatcattacgatagagattcaacaagagatagagaaacatcatcctcaagtggtagt 740
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agagatcattacgatagagattcaacaagagatagagaaacatcatcctcaagtggtagt 740

                                                                       
Query: 741 ggtaaaagagagaatgactcttatccatcaagtaaaagcgactcaaatagagatagagaa 800
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggtaaaagagagaatgactcttatccatcaagtaaaagcgactcaaatagagatagagaa 800

                                                                       
Query: 801 aatagggattattcttcaacaactagtggaagtaaacgagaaagtaaggatagagcatca 860
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aatagggattattcttcaacaactagtggaagtaaacgagaaagtaaggatagagcatca 860

                                                                       
Query: 861 gatagtaatcaatcaagtagtggtggtagaaaagattctgatcattcatactcatcaagt 920
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 gatagtaatcaatcaagtagtggtggtagaaaagattctgatcattcatactcatcaagt 920

                             
Query: 921 ggtagtggcaacagggac 938
           ||||||||||||||||||
Sbjct: 921 ggtagtggcaacagggac 938


 Score =  291 bits (147), Expect = 1e-78
 Identities = 147/147 (100%)
 Strand = Plus / Plus

                                                                        
Query: 964  cctcatcaaatgccagaaaagaaacctctgataacagagacagagactcatcctcaacct 1023
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 964  cctcatcaaatgccagaaaagaaacctctgataacagagacagagactcatcctcaacct 1023

                                                                        
Query: 1024 ctaccaatagtagagatagatcagataaaaatgaaaacactagaactagagattcaaata 1083
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1024 ctaccaatagtagagatagatcagataaaaatgaaaacactagaactagagattcaaata 1083

                                       
Query: 1084 aaaaagatgaatcacaaagaagtgaac 1110
            |||||||||||||||||||||||||||
Sbjct: 1084 aaaaagatgaatcacaaagaagtgaac 1110


 Score =  276 bits (139), Expect = 6e-74
 Identities = 139/139 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1183 cgaataatgaaagagattcagataaatcctcaacaagaaatgaaagagaacaaagtggta 1242
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1183 cgaataatgaaagagattcagataaatcctcaacaagaaatgaaagagaacaaagtggta 1242

                                                                        
Query: 1243 gatcctcttcaaaatcttcaaatgtatccccttcttcttcctcttcctcatcaacaccat 1302
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1243 gatcctcttcaaaatcttcaaatgtatccccttcttcttcctcttcctcatcaacaccat 1302

                               
Query: 1303 cacaatctagagagtaaat 1321
            |||||||||||||||||||
Sbjct: 1303 cacaatctagagagtaaat 1321


 Score =  196 bits (99), Expect = 4e-50
 Identities = 99/99 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  atccactaatatacaatgctggtgataaatcagtagtatcagtaattgtcgttgttgttg 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  atccactaatatacaatgctggtgataaatcagtagtatcagtaattgtcgttgttgttg 60

                                                 
Query: 61 ttgttgatgatgattctcctgatactgtagatgatgatc 99
          |||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttgttgatgatgattctcctgatactgtagatgatgatc 99


 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 572 gatcggtaatatttgtttataaagaaatg 600
           |||||||||||||||||||||||||||||
Sbjct: 572 gatcggtaatatttgtttataaagaaatg 600


>Contig-U12582-1 (Contig-U12582-1Q) /CSM_Contig/Contig-U12582-1Q.Seq.d
          Length = 1079

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 51  gttgttgttgttgttgatgatgattc 76
           ||||||||||||||||||||||||||
Sbjct: 367 gttgttgttgttgttgatgatgattc 342


 Score = 32.2 bits (16), Expect = 1.5
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                           
Query: 285 ttattattattattat 300
           ||||||||||||||||
Sbjct: 394 ttattattattattat 379


 Score = 32.2 bits (16), Expect = 1.5
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                           
Query: 285 ttattattattattat 300
           ||||||||||||||||
Sbjct: 214 ttattattattattat 199


 Score = 32.2 bits (16), Expect = 1.5
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                           
Query: 285 ttattattattattat 300
           ||||||||||||||||
Sbjct: 391 ttattattattattat 376


 Score = 32.2 bits (16), Expect = 1.5
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                           
Query: 285 ttattattattattat 300
           ||||||||||||||||
Sbjct: 397 ttattattattattat 382


 Score = 32.2 bits (16), Expect = 1.5
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                           
Query: 285 ttattattattattat 300
           ||||||||||||||||
Sbjct: 220 ttattattattattat 205


 Score = 32.2 bits (16), Expect = 1.5
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                           
Query: 285 ttattattattattat 300
           ||||||||||||||||
Sbjct: 217 ttattattattattat 202


 Score = 30.2 bits (15), Expect = 5.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                          
Query: 285 ttattattattatta 299
           |||||||||||||||
Sbjct: 211 ttattattattatta 197


 Score = 30.2 bits (15), Expect = 5.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                          
Query: 285 ttattattattatta 299
           |||||||||||||||
Sbjct: 388 ttattattattatta 374


 Score = 30.2 bits (15), Expect = 5.8
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                          
Query: 286 tattattattattat 300
           |||||||||||||||
Sbjct: 399 tattattattattat 385


>Contig-U11464-1 (Contig-U11464-1Q) /CSM_Contig/Contig-U11464-1Q.Seq.d
          Length = 1988

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                          
Query: 46   ttgtcgttgttgttgttgttgatgatgatt 75
            |||| |||||||||||||||||||||||||
Sbjct: 1765 ttgtggttgttgttgttgttgatgatgatt 1736


 Score = 34.2 bits (17), Expect = 0.37
 Identities = 20/21 (95%)
 Strand = Plus / Minus

                                 
Query: 46   ttgtcgttgttgttgttgttg 66
            |||| ||||||||||||||||
Sbjct: 1149 ttgttgttgttgttgttgttg 1129


 Score = 34.2 bits (17), Expect = 0.37
 Identities = 20/21 (95%)
 Strand = Plus / Minus

                                 
Query: 46   ttgtcgttgttgttgttgttg 66
            |||| ||||||||||||||||
Sbjct: 1173 ttgttgttgttgttgttgttg 1153


 Score = 34.2 bits (17), Expect = 0.37
 Identities = 20/21 (95%)
 Strand = Plus / Minus

                                 
Query: 46   ttgtcgttgttgttgttgttg 66
            |||| ||||||||||||||||
Sbjct: 1152 ttgttgttgttgttgttgttg 1132


 Score = 34.2 bits (17), Expect = 0.37
 Identities = 20/21 (95%)
 Strand = Plus / Minus

                                 
Query: 46   ttgtcgttgttgttgttgttg 66
            |||| ||||||||||||||||
Sbjct: 1182 ttgttgttgttgttgttgttg 1162


 Score = 34.2 bits (17), Expect = 0.37
 Identities = 20/21 (95%)
 Strand = Plus / Minus

                                 
Query: 46   ttgtcgttgttgttgttgttg 66
            |||| ||||||||||||||||
Sbjct: 1158 ttgttgttgttgttgttgttg 1138


 Score = 34.2 bits (17), Expect = 0.37
 Identities = 20/21 (95%)
 Strand = Plus / Minus

                                 
Query: 46   ttgtcgttgttgttgttgttg 66
            |||| ||||||||||||||||
Sbjct: 1167 ttgttgttgttgttgttgttg 1147


 Score = 34.2 bits (17), Expect = 0.37
 Identities = 20/21 (95%)
 Strand = Plus / Minus

                                 
Query: 46   ttgtcgttgttgttgttgttg 66
            |||| ||||||||||||||||
Sbjct: 1143 ttgttgttgttgttgttgttg 1123


 Score = 34.2 bits (17), Expect = 0.37
 Identities = 20/21 (95%)
 Strand = Plus / Minus

                                 
Query: 46   ttgtcgttgttgttgttgttg 66
            |||| ||||||||||||||||
Sbjct: 1185 ttgttgttgttgttgttgttg 1165


 Score = 34.2 bits (17), Expect = 0.37
 Identities = 20/21 (95%)
 Strand = Plus / Minus

                                 
Query: 46   ttgtcgttgttgttgttgttg 66
            |||| ||||||||||||||||
Sbjct: 1170 ttgttgttgttgttgttgttg 1150


 Score = 34.2 bits (17), Expect = 0.37
 Identities = 20/21 (95%)
 Strand = Plus / Minus

                                 
Query: 46   ttgtcgttgttgttgttgttg 66
            |||| ||||||||||||||||
Sbjct: 1146 ttgttgttgttgttgttgttg 1126


 Score = 34.2 bits (17), Expect = 0.37
 Identities = 20/21 (95%)
 Strand = Plus / Minus

                                 
Query: 46   ttgtcgttgttgttgttgttg 66
            |||| ||||||||||||||||
Sbjct: 1164 ttgttgttgttgttgttgttg 1144


 Score = 34.2 bits (17), Expect = 0.37
 Identities = 20/21 (95%)
 Strand = Plus / Minus

                                 
Query: 46   ttgtcgttgttgttgttgttg 66
            |||| ||||||||||||||||
Sbjct: 1155 ttgttgttgttgttgttgttg 1135


 Score = 34.2 bits (17), Expect = 0.37
 Identities = 20/21 (95%)
 Strand = Plus / Minus

                                 
Query: 46   ttgtcgttgttgttgttgttg 66
            |||| ||||||||||||||||
Sbjct: 1176 ttgttgttgttgttgttgttg 1156


 Score = 34.2 bits (17), Expect = 0.37
 Identities = 20/21 (95%)
 Strand = Plus / Minus

                                 
Query: 46   ttgtcgttgttgttgttgttg 66
            |||| ||||||||||||||||
Sbjct: 1179 ttgttgttgttgttgttgttg 1159


 Score = 34.2 bits (17), Expect = 0.37
 Identities = 20/21 (95%)
 Strand = Plus / Minus

                                 
Query: 46   ttgtcgttgttgttgttgttg 66
            |||| ||||||||||||||||
Sbjct: 1161 ttgttgttgttgttgttgttg 1141


 Score = 32.2 bits (16), Expect = 1.5
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                            
Query: 51   gttgttgttgttgttg 66
            ||||||||||||||||
Sbjct: 1186 gttgttgttgttgttg 1171


 Score = 30.2 bits (15), Expect = 5.8
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                               
Query: 46   ttgtcgttgttgttgttgt 64
            |||| ||||||||||||||
Sbjct: 1140 ttgttgttgttgttgttgt 1122


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 46,343
Number of Sequences: 6905
Number of extensions: 46343
Number of successful extensions: 20342
Number of sequences better than 10.0: 2411
length of query: 1321
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1305
effective length of database: 5,564,391
effective search space: 7261530255
effective search space used: 7261530255
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.25
Homology vs DNA 
Query= Contig-U11532-1 (Contig-U11532-1Q) /CSM_Contig/Contig-U11532-1Q.Seq.d
         (1321 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ357606) Dictyostelium discoideum cDNA clone:dda64h05, 3' ...   470   0.0    4
(BJ381295) Dictyostelium discoideum cDNA clone:ddc41f06, 3' ...   299   0.0    4
(BJ330070) Dictyostelium discoideum cDNA clone:dda27d11, 5' ...   309   e-155  4
(BJ367023) Dictyostelium discoideum cDNA clone:ddc41f06, 5' ...   309   e-153  4
(BJ339092) Dictyostelium discoideum cDNA clone:dda64h05, 5' ...   317   e-151  4
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    50   2e-09  4
(AC110833) Rattus norvegicus clone CH230-189A5, *** SEQUENCI...    58   3e-08  2
(FG693118) G1144P35RM20.T0 Anolis carolinensis pooled normal...    58   3e-08  3
(AC181429) Strongylocentrotus purpuratus clone R3-50G3, WORK...    46   4e-07  5
(AC129039) Rattus norvegicus clone CH230-252A9, WORKING DRAF...    56   6e-07  3
(AC116924) Dictyostelium discoideum chromosome 2 map 6357117...    56   7e-07  4
(AW194050) xm11d10.x1 NCI_CGAP_Ut4 Homo sapiens cDNA clone I...    58   8e-07  2
(AC188868) Phakopsora pachyrhizi clone JGIAFNA-2021N3, compl...    42   9e-07  4
(CR931781) Zebrafish DNA sequence from clone DKEYP-71H2 in l...    68   9e-07  1
(AC188444) Gallus gallus BAC clone CH261-78K2 from chromosom...    68   9e-07  1
(AL929351) Plasmodium falciparum strain 3D7, chromosome 5, s...    68   9e-07  1
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    50   9e-07  4
(DY890096) CeleSEQ7151 Cunninghamella elegans pBluescript (E...    52   1e-06  2
(AC109863) Rattus norvegicus clone CH230-291I20, *** SEQUENC...    58   1e-06  3
(AE014837) Plasmodium falciparum 3D7 chromosome 11 section 2...    46   2e-06  6
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    50   2e-06  4
(AC107479) Rattus norvegicus clone CH230-57J20, *** SEQUENCI...    50   2e-06  2
(AF109776) Metapenaeus ensis hyperglycemic hormone-like neur...    58   2e-06  2
(AC111365) Rattus norvegicus clone CH230-82K21, *** SEQUENCI...    50   2e-06  2
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    50   2e-06  3
(DY893027) CeleSEQ12189 Cunninghamella elegans pBluescript (...    48   3e-06  4
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...    50   3e-06  5
(CU013526) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    58   3e-06  2
(CT997819) Zebrafish DNA sequence from clone CH211-121B5.          58   3e-06  2
(CR383670) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    66   4e-06  1
(CR293519) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    62   4e-06  4
(AC135122) Rattus norvegicus clone CH230-396L23, *** SEQUENC...    58   5e-06  2
(CR388087) Zebrafish DNA sequence from clone DKEY-19N7 in li...    60   6e-06  2
(AC125911) Rattus norvegicus clone CH230-95C23, *** SEQUENCI...    62   6e-06  3
(AC115594) Dictyostelium discoideum chromosome 2 map 4071862...    46   8e-06  5
(D31777) Trimeresurus flavoviridis gTfTBP gene for TATA-box ...    58   8e-06  2
(AA587886) nm71a08.s1 NCI_CGAP_Co9 Homo sapiens cDNA clone I...    58   1e-05  2
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    50   1e-05  3
(G10326) human STS CHLC.ATC6A06.P34945 clone ATC6A06, sequen...    58   1e-05  2
(BF108947) 7l54h08.x1 Soares_NSF_F8_9W_OT_PA_P_S1 Homo sapie...    58   1e-05  2
(AC165428) Strongylocentrotus purpuratus BAC clone contig co...    54   1e-05  2
(AL929352) Plasmodium falciparum strain 3D7, chromosome 5, s...    50   1e-05  2
(AC178856) Strongylocentrotus purpuratus clone R3-26I21, WOR...    54   1e-05  2
(AW768749) hl52d07.x1 NCI_CGAP_Co14 Homo sapiens cDNA clone ...    58   1e-05  2
(AA083088) zn08h06.s1 Stratagene hNT neuron (#937233) Homo s...    58   1e-05  2
(AA053415) zl71d03.s1 Stratagene colon (#937204) Homo sapien...    58   1e-05  2
(AA524108) ng35a11.s1 NCI_CGAP_Co3 Homo sapiens cDNA clone I...    58   1e-05  2
(CR016165) Forward strand read from insert in 5'HPRT inserti...    64   1e-05  1
(AW198054) xo27h09.x1 NCI_CGAP_Pan1 Homo sapiens cDNA clone ...    58   1e-05  2
(EH015246) USDA-FP_187866 Lysiphlebus testaceipes adult whol...    54   2e-05  2
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572...    54   2e-05  3
(AW088809) xd30f01.x1 NCI_CGAP_Ov23 Homo sapiens cDNA clone ...    58   2e-05  2
(AC161439) Mus musculus chromosome 7, clone RP24-297G19, com...    58   2e-05  3
(AA427938) zw53d03.s1 Soares_total_fetus_Nb2HF8_9w Homo sapi...    58   2e-05  2
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568...    50   2e-05  2
(CA415716) UI-H-FE0-bbm-j-23-0-UI.s1 NCI_CGAP_FE0 Homo sapie...    58   2e-05  2
(BJ336229) Dictyostelium discoideum cDNA clone:dda53n03, 5' ...    58   2e-05  2
(CU856157) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    58   2e-05  2
(DL067141) Cancer Gene Determination and Therapeutic Screeni...    58   2e-05  2
(DL063504) Cancer Gene Determination and Therapeutic Screeni...    58   2e-05  2
(AX335745) Sequence 6254 from Patent WO0194629.                    58   2e-05  2
(AX332108) Sequence 2617 from Patent WO0194629.                    58   2e-05  2
(AA610066) af08e07.s1 Soares_testis_NHT Homo sapiens cDNA cl...    58   2e-05  2
(AI742063) wg38e06.x1 Soares_NSF_F8_9W_OT_PA_P_S1 Homo sapie...    58   2e-05  2
(AI765480) wi80e11.x1 NCI_CGAP_Kid12 Homo sapiens cDNA clone...    58   2e-05  2
(AA887425) oj50b02.s1 NCI_CGAP_Kid3 Homo sapiens cDNA clone ...    58   2e-05  2
(AI674388) wc44a01.x1 NCI_CGAP_Pr28 Homo sapiens cDNA clone ...    58   2e-05  2
(AC103312) Rattus norvegicus clone CH230-121E7, *** SEQUENCI...    58   2e-05  4
(CA438749) UI-H-DH0-aus-f-17-0-UI.s1 NCI_CGAP_DH0 Homo sapie...    58   2e-05  2
(DY885035) CeleSEQ213 Cunninghamella elegans pBluescript (Ec...    52   2e-05  2
(CB323747) UI-R-DY0-crg-a-01-0-UI.s1 NCI_CGAP_DY0 Rattus nor...    58   2e-05  2
(AL844509) Plasmodium falciparum chromosome 13.                    52   2e-05  7
(AC178262) Strongylocentrotus purpuratus clone R3-3089F21, W...    50   2e-05  2
(AC120707) Rattus norvegicus clone CH230-42A18, *** SEQUENCI...    50   2e-05  3
(CA434999) UI-H-DH0-asf-k-08-0-UI.s1 NCI_CGAP_DH0 Homo sapie...    58   2e-05  2
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...    50   3e-05  3
(AC102366) Mus musculus clone RP23-176K15, LOW-PASS SEQUENCE...    60   3e-05  3
(BM551309) AGENCOURT_6544986 NIH_MGC_88 Homo sapiens cDNA cl...    58   3e-05  2
(AC120892) Rattus norvegicus clone CH230-180P23, *** SEQUENC...    58   5e-05  5
(AC117080) Dictyostelium discoideum chromosome 2 map complem...    42   5e-05  3
(AC179042) Strongylocentrotus purpuratus clone R3-4005C17, W...    52   5e-05  2
(BC014651) Homo sapiens homeobox B6, mRNA (cDNA clone MGC:20...    58   5e-05  2
(AC122118) Mus musculus chromosome 18, clone RP24-225P17, co...    44   5e-05  6
(AY812209) Schistosoma japonicum SJCHGC07181 protein mRNA, p...    48   6e-05  3
(BX664604) Zebrafish DNA sequence from clone CH211-253F20 in...    62   6e-05  1
(BX511086) Zebrafish DNA sequence from clone DKEY-38P8 in li...    62   6e-05  1
(BX119908) Zebrafish DNA sequence from clone CH211-225A3 in ...    62   6e-05  1
(AL591671) Zebrafish DNA sequence from clone BUSM1-107D16 in...    62   6e-05  1
(BX284649) Mouse DNA sequence from clone RP23-42M7 on chromo...    62   6e-05  1
(AC122028) Mus musculus BAC clone RP24-394D4 from 2, complet...    62   6e-05  1
(DD267290) Molecular Hepatotoxicology Modeling.                    62   6e-05  1
(AC004912) Homo sapiens PAC clone RP5-871B15 from 7, complet...    62   6e-05  1
(AC128493) Rattus norvegicus clone CH230-14B11, *** SEQUENCI...    62   6e-05  1
(AC103142) Rattus norvegicus clone CH230-40N16, WORKING DRAF...    62   6e-05  1
(AC231998) Solanum tuberosum strain Diploid genotype RH89-03...    62   6e-05  1
(AC204494) Macaca mulatta clone CH250-79D4, WORKING DRAFT SE...    62   6e-05  1
(AC204255) Zea mays chromosome 2 clone ZMMBBb-575O21; ZMMBBb...    62   6e-05  1
(AC181553) Strongylocentrotus purpuratus clone R3-7G5, WORKI...    62   6e-05  1
(AZ665151) 1M0545K23R Mouse 10kb plasmid UUGC1M library Mus ...    62   6e-05  1
(CG060130) PUIIJ33TB ZM_0.6_1.0_KB Zea mays genomic clone ZM...    62   6e-05  1

>(BJ357606) Dictyostelium discoideum cDNA clone:dda64h05, 3' end,
           single read.
          Length = 685

 Score =  470 bits (237), Expect(4) = 0.0
 Identities = 237/237 (100%)
 Strand = Plus / Minus


Query: 702 tcaacaagagatagagaaacatcatcctcaagtggtagtggtaaaagagagaatgactct 761
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 tcaacaagagatagagaaacatcatcctcaagtggtagtggtaaaagagagaatgactct 545


Query: 762 tatccatcaagtaaaagcgactcaaatagagatagagaaaatagggattattcttcaaca 821
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tatccatcaagtaaaagcgactcaaatagagatagagaaaatagggattattcttcaaca 485


Query: 822 actagtggaagtaaacgagaaagtaaggatagagcatcagatagtaatcaatcaagtagt 881
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 actagtggaagtaaacgagaaagtaaggatagagcatcagatagtaatcaatcaagtagt 425


Query: 882 ggtggtagaaaagattctgatcattcatactcatcaagtggtagtggcaacagggac 938
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ggtggtagaaaagattctgatcattcatactcatcaagtggtagtggcaacagggac 368

 Score =  291 bits (147), Expect(4) = 0.0
 Identities = 147/147 (100%)
 Strand = Plus / Minus


Query: 964  cctcatcaaatgccagaaaagaaacctctgataacagagacagagactcatcctcaacct 1023
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342  cctcatcaaatgccagaaaagaaacctctgataacagagacagagactcatcctcaacct 283


Query: 1024 ctaccaatagtagagatagatcagataaaaatgaaaacactagaactagagattcaaata 1083
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282  ctaccaatagtagagatagatcagataaaaatgaaaacactagaactagagattcaaata 223


Query: 1084 aaaaagatgaatcacaaagaagtgaac 1110
            |||||||||||||||||||||||||||
Sbjct: 222  aaaaagatgaatcacaaagaagtgaac 196

 Score =  240 bits (121), Expect(4) = 0.0
 Identities = 124/125 (99%)
 Strand = Plus / Minus


Query: 1184 gaataatgaaagagattcagataaatcctcaacaagaaatgaaagagaacaaagtggtag 1243
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125  gaataatgaaagagattcagataaatcctcaacaagaaatgaaagagaacaaagtggtag 66


Query: 1244 atcctcttcaaaatcttcaaatgtatccccttcttcttcctcttcctcatcaacaccatc 1303
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 65   atcctcttcaaaatcttcaaatgtatcccctccttcttcctcttcctcatcaacaccatc 6


Query: 1304 acaat 1308
            |||||
Sbjct: 5    acaat 1

 Score = 30.2 bits (15), Expect(4) = 0.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus


Query: 621 agaagaagcgaaagt 635
           |||||||||||||||
Sbjct: 685 agaagaagcgaaagt 671

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,108,173,484
Number of extensions: 85646660
Number of successful extensions: 14430915
Number of sequences better than 10.0: 11519
Length of query: 1321
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1297
Effective length of database: 97,308,875,965
Effective search space: 126209612126605
Effective search space used: 126209612126605
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.30
Homology vs Protein 
Query= Contig-U11532-1 (Contig-U11532-1Q) /CSM_Contig/Contig-U11532-1Q.Seq.d
         (1321 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY119556_1(AY119556|pid:none) Drosophila melanogaster GH28840 fu...    36   3.5
CP000393_1806(CP000393|pid:none) Trichodesmium erythraeum IMS101...    36   3.5
AY052322_1(AY052322|pid:none) Arabidopsis thaliana AT5g53800/MGN...    35   6.0
AB017066_15(AB017066|pid:none) Arabidopsis thaliana genomic DNA,...    35   6.0
AY086473_1(AY086473|pid:none) Arabidopsis thaliana clone 253359 ...    35   6.0
CP000001_4132(CP000001|pid:none) Bacillus cereus E33L, complete ...    35   6.0
AE017194_4477(AE017194|pid:none) Bacillus cereus ATCC 10987, com...    35   7.9
T18954(T18954)hypothetical protein C05C9.3 - Caenorhabditis eleg...    35   7.9
Z68000_1(Z68000|pid:none) Caenorhabditis elegans Cosmid C05C9, c...    35   7.9

>AY119556_1(AY119556|pid:none) Drosophila melanogaster GH28840 full
            insert cDNA.
          Length = 1272

 Score = 35.8 bits (81), Expect = 3.5
 Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 1/94 (1%)
 Frame = +1

Query: 967  HQMPEKKPLITETET-HPQPLPIVEIDQIKMKTLELEIQIKKMNHKEVNXXXXXXXQERK 1143
            H +  K     ET   H +  P     Q++   L +  Q+     + V        QER
Sbjct: 129  HDLENKMERQAETMLQHQEEQPAAAQQQMRASVLMVPAQMAHQERERVRELQRVQEQERM 188

Query: 1144 KIQKTQQHHLQHHRIMKEIQINPQQEMKENKVVD 1245
            ++Q+ Q+H  Q  ++ ++ Q   QQE   + + +
Sbjct: 189  QLQREQEHRHQQQQLQQQQQHQQQQEQVHHVITE 222

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 802,906,862
Number of extensions: 9979047
Number of successful extensions: 63005
Number of sequences better than 10.0: 9
Number of HSP's gapped: 61090
Number of HSP's successfully gapped: 9
Length of query: 440
Length of database: 1,051,180,864
Length adjustment: 132
Effective length of query: 308
Effective length of database: 623,955,076
Effective search space: 192178163408
Effective search space used: 192178163408
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.32  gvh: 0.34  alm: 0.34  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: extracellular, including cell wall
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U11532-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 2
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0