NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U01788-1
Contig ID Contig-U01788-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U01788-1 (Contig-U01788-1Q) /CSM_Contig/Contig-U01788-1Q.Seq.d
CAAAAATTAAAAAATACATTTATAGAAATATATAACTTTTTTTTTTATAA
TTAATAATTTCAAAAATTTTAATATGTTTAGACAATTAAATAAAACAACA
ACAAAGAATTTTATGCTCTCATTGAGAGGAACTACTGTTAGATCTGTTTC
AACTGGAGGATATTATAAAAGTAATGAAGAATTAGATAAAATAAAGAAAC
AAGATCTTCCTGATGAAAGAGTTAATGAAATAATCAGACAAGCTGAAGAA
CAAAAGACACATGGATTAAGTTCAATTGAAACTGAAGGTGCAGCAAATAT
CCATAAGGCTCAAAAGAAAATCTTAAAAGATGGTTCCAAAAGATGTTGAA
AAGTTTGATTAAAAATAATTTATTTTCAACATAATTCATATATTAGTAAT
ATAATAACATTTCCCATCTTTTTTTTTTAAAAATATATATTCATATATAT
TTATCCAATTGTAAATAATTTTTTTAAAAAAATAAAAAAAAAAAAAAAAA
AAAAAAAAAATATATAAAAAAA----------AAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAATAATAATAATAATAATAATATCAAAAATAT
ATAAACTATTATGATTAATATTCAAATAAAACCAATATGTATACATTACA
TATTTTCCAAAAAAAAAAAAAAAATTAAATAAAAAAAAAAAAAAAACAAA
AGAATAAATCTTTAATATTTTTTTTTTTTTTAAACAAAAAAAAAAAAA
Gap gap included
Contig length 788
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 728265
End point 727568
Strand (PLUS/MINUS) MINUS
Number of clones 9
Number of EST 13
Link to clone list U01788
List of clone(s) 

est1=VSD425Z,-4,367
est2=SSH462F,1,291
est3=VSD425F,1,523
est4=VSK283F,1,523
est5=SSB680F,2,280
est6=SSI809F,6,453
est7=SSM769E,25,522
est8=SSM414F,39,256
est9=SSM422F,39,256
est10=VSK283Z,94,291
est11=SSG411Z,524,699
est12=SSM414Z,564,701
est13=SSH462Z,566,790
Translated Amino Acid sequence 
qklkntfieiynfffyn**fqkf*yv*tik*nnnkefyaliernyc*icfnwril*k**r
ir*nketrss**ks**nnqts*rtkdtwikfn*n*rcskyp*gskenlkrwfqkmlksli
knnlfst*fiy**ynnishlfflkiyihiylsnck*ff*KNKKKKKKKKKYIKK---

---KKKKKKKKKKKKNKKKKKKKKKKKKKKKKIIIIIIISKIYKLL*lifk*nqyvyity
fpkkkkklnkkkkktke*ifniffffkqkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
qklkntfieiynfffyn**fqkf*yv*tik*nnnkefyaliernyc*icfnwril*k**r
ir*nketrss**ks**nnqts*rtkdtwikfn*n*rcskyp*gskenlkrwfqkmlksli
knnlfst*fiy**ynnishlfflkiyihiylsnck*ff*KNKKKKKKKKKYIKK---

---KKKKKKKKKKKKNKKKKKKKKKKKKKKKKIIIIIIISKIYKLL*lifk*nqyvyity
fpkkkkklnkkkkktke*ifniffffkqkkk

Frame B:
kn*kihl*kyitfffiinnfknfnmfrqlnktttknfmlslrgttvrsvstggyyksnee
ldkikkqdlpdervneiirqaeeqkthglssietegaanihkaqkkilkdgskrc*kv*l
kiiyfqhnsyisniitfpifff*kyifiyiypivnnffkkikkkkkkkkni*k---

---kkkkkkkkkkkkikkkkkkkkkkkkkkkk******yqkyinyyd*ysnktnmytlhi
fqkkkkn*ikkkkkqknkslifffflnkkkk

Frame C:
kikkyiyrni*lffl*liiskilicldn*ikqqqrilcsh*eellldlfqlediikvmkn
*ik*rnkiflmkelmk*sdklknkrhmd*vqlklkvqqisirlkrks*kmvpkdvekfd*
k*fifniihilvi**hfpsfffkniysyifiql*iiflkk*kkkkkkkkiykk---

---kkkkkkkkkkkk*kkkkkkkkkkkkkkknnnnnnnikni*timiniqikpicihyif
skkkkkik*kkkknkrinl*yffff*tkkkk
own update 2004. 6. 7
Homology vs CSM-cDNA 
Query= Contig-U01788-1 (Contig-U01788-1Q)
/CSM_Contig/Contig-U01788-1Q.Seq.d
         (798 letters)

Database: CSM
           8361 sequences; 7,895,291 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U01788-1 (Contig-U01788-1Q) /CSM_Contig/Conti...   823  0.0
Contig-U11478-1 (Contig-U11478-1Q) /CSM_Contig/Conti...    46  8e-05
Contig-U14623-1 (Contig-U14623-1Q) /CSM_Contig/Conti...    38  0.020
Contig-U11356-1 (Contig-U11356-1Q) /CSM_Contig/Conti...    38  0.020
Contig-U09733-1 (Contig-U09733-1Q) /CSM_Contig/Conti...    38  0.020
Contig-U13715-1 (Contig-U13715-1Q) /CSM_Contig/Conti...    36  0.078
Contig-U12799-1 (Contig-U12799-1Q) /CSM_Contig/Conti...    36  0.078
Contig-U12118-1 (Contig-U12118-1Q) /CSM_Contig/Conti...    36  0.078
Contig-U11814-1 (Contig-U11814-1Q) /CSM_Contig/Conti...    36  0.078
Contig-U11748-1 (Contig-U11748-1Q) /CSM_Contig/Conti...    36  0.078

>Contig-U01788-1 (Contig-U01788-1Q) /CSM_Contig/Contig-U01788-1Q.Seq.d
          Length = 798

 Score =  823 bits (415), Expect = 0.0
 Identities = 455/475 (95%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaaaattaaaaaatacatttatagaaatatataacnnnnnnnnnnataattaataattt 60
           ||||||||||||||||||||||||||||||||||||          ||||||||||||||
Sbjct: 1   caaaaattaaaaaatacatttatagaaatatataacttttttttttataattaataattt 60

                                                                       
Query: 61  caaaaattttaatatgtttagacaattaaataaaacaacaacaaagaattttatgctctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  caaaaattttaatatgtttagacaattaaataaaacaacaacaaagaattttatgctctc 120

                                                                       
Query: 121 attgagaggaactactgttagatctgtttcaactggaggatattataaaagtaatgaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 attgagaggaactactgttagatctgtttcaactggaggatattataaaagtaatgaaga 180

                                                                       
Query: 181 attagataaaataaagaaacaagatcttcctgatgaaagagttaatgaaataatcagaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 attagataaaataaagaaacaagatcttcctgatgaaagagttaatgaaataatcagaca 240

                                                                       
Query: 241 agctgaagaacaaaagacacatggattaagttcaattgaaactgaaggtgcagcaaatat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agctgaagaacaaaagacacatggattaagttcaattgaaactgaaggtgcagcaaatat 300

                                                                       
Query: 301 ccataaggctcaaaagaaaatcttaaaagatggttccaaaagatgttgaaaagtttgatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccataaggctcaaaagaaaatcttaaaagatggttccaaaagatgttgaaaagtttgatt 360

                                                                       
Query: 361 aaaaataatttattttcaacataattcatatattagtaatataataacatttcccatcnn 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 361 aaaaataatttattttcaacataattcatatattagtaatataataacatttcccatctt 420

                                                                  
Query: 421 nnnnnnnnaaaaatatatattcatatatatttatccaattgtaaataattttttt 475
                   |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ttttttttaaaaatatatattcatatatatttatccaattgtaaataattttttt 475


 Score = 56.0 bits (28), Expect = 8e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 681 accaatatgtatacattacatattttcc 708
           ||||||||||||||||||||||||||||
Sbjct: 681 accaatatgtatacattacatattttcc 708


 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 752 gaataaatctttaata 767
           ||||||||||||||||
Sbjct: 752 gaataaatctttaata 767


>Contig-U11478-1 (Contig-U11478-1Q) /CSM_Contig/Contig-U11478-1Q.Seq.d
          Length = 1925

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 432 aatatatattcatatatatttat 454
           |||||||||||||||||||||||
Sbjct: 19  aatatatattcatatatatttat 41


>Contig-U14623-1 (Contig-U14623-1Q) /CSM_Contig/Contig-U14623-1Q.Seq.d
          Length = 173

 Score = 38.2 bits (19), Expect = 0.020
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 432 aatatatattcatatatatttat 454
           |||||||||| ||||||||||||
Sbjct: 37  aatatatatttatatatatttat 15


  Database: CSM
    Posted date:  Jun 7, 2004  8:33 AM
  Number of letters in database: 7,895,291
  Number of sequences in database:  8361
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 29,074
Number of Sequences: 8361
Number of extensions: 29074
Number of successful extensions: 3268
Number of sequences better than 10.0: 343
length of query: 798
length of database: 7,895,291
effective HSP length: 16
effective length of query: 782
effective length of database: 7,761,515
effective search space: 6069504730
effective search space used: 6069504730
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 5. 7
Homology vs DNA 
Query= Contig-U01788-1 (Contig-U01788-1Q) /CSM_Contig/Contig-U01788-1Q.Seq.d
         (798 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU264008) Dictyostelium discoideum vegetative cDNA clone:VS...   547   0.0    3
(AU270935) Dictyostelium discoideum vegetative cDNA clone:VS...   541   0.0    3
(C93203) Dictyostelium discoideum slug cDNA, clone SSM769.        502   0.0    2
(AU264009) Dictyostelium discoideum vegetative cDNA clone:VS...   626   0.0    2
(AU073942) Dictyostelium discoideum slug cDNA, clone SSI809.      394   e-117  2
(AU071507) Dictyostelium discoideum slug cDNA, clone SSB680.      387   e-117  2
(AU073527) Dictyostelium discoideum slug cDNA, clone SSH462.      385   e-117  2
(AU075029) Dictyostelium discoideum slug cDNA, clone SSM769.      432   e-117  1
(AU074905) Dictyostelium discoideum slug cDNA, clone SSM422.      416   e-112  1
(AU074904) Dictyostelium discoideum slug cDNA, clone SSM414.      416   e-112  1
(AU270936) Dictyostelium discoideum vegetative cDNA clone:VS...   188   1e-60  2
(AL808132) Mouse DNA sequence from clone RP23-125A12 on chro...    54   0.008  1
(AC118014) Mus musculus clone RP23-456L6, WORKING DRAFT SEQU...    54   0.008  1
(EJ882150) 1093018400336 Global-Ocean-Sampling_GS-30-02-01-1...    42   0.010  3
(EJ195126) 1092344228901 Global-Ocean-Sampling_GS-27-01-01-1...    42   0.011  3
(EJ942580) 1093018895702 Global-Ocean-Sampling_GS-30-02-01-1...    42   0.012  3
(EJ783775) 1093017298276 Global-Ocean-Sampling_GS-30-02-01-1...    42   0.014  3
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp...    36   0.027  13
(AF222894) Ureaplasma parvum serovar 3 str. ATCC 700970, com...    36   0.027  13
(AM426431) Vitis vinifera contig VV78X073084.3, whole genome...    34   0.055  4
(AC111672) Rattus norvegicus clone CH230-49L13, *** SEQUENCI...    40   0.079  2
(AL844509) Plasmodium falciparum chromosome 13.                    38   0.080  15
(CU459123) Zebrafish DNA sequence from clone CH73-360O10 in ...    38   0.081  4
(AC004153) Plasmodium falciparum chromosome 12 clone PFYAC81...    40   0.088  8
(CR352331) Zebrafish DNA sequence from clone DKEY-171H2 in l...    40   0.098  3
(EK332696) 1095467030084 Global-Ocean-Sampling_GS-31-01-01-1...    40   0.12   2
(AC232476) Brassica rapa subsp. pekinensis clone KBrB034F07,...    40   0.14   6
(AE014826) Plasmodium falciparum 3D7 chromosome 14 section 1...    38   0.15   9
(AC213342) Pongo abelii chromosome UNKNOWN clone CH276-493G8...    38   0.29   2
(AC189382) Brassica rapa subsp. pekinensis clone KBrB051H12,...    36   0.30   5
(AC216646) Solanum lycopersicum chromosome 6 clone C06HBa004...    34   0.30   2
(DN268291) LIB30320_006_C08_SP6_1 LIB30320 Canis lupus famil...    36   0.39   2
(AE014840) Plasmodium falciparum 3D7 chromosome 11 section 5...    36   0.42   9
(AP008212) Oryza sativa (japonica cultivar-group) genomic DN...    48   0.52   1
(AP008209) Oryza sativa (japonica cultivar-group) genomic DN...    48   0.52   1
(AP005446) Oryza sativa Japonica Group genomic DNA, chromoso...    48   0.52   1
(AP004279) Oryza sativa Japonica Group genomic DNA, chromoso...    48   0.52   1
(AC105364) Oryza sativa Japonica Group chromosome 3 clone OJ...    48   0.52   1
(AC104474) Oryza sativa Japonica Group chromosome 3 clone OS...    48   0.52   1
(EA729885) Sequence 108764 from patent US 7365185.                 48   0.52   1
(EA702109) Sequence 80988 from patent US 7365185.                  48   0.52   1
(AC108205) Homo sapiens BAC clone RP11-140N6 from 4, complet...    48   0.52   1
(AC079294) Homo sapiens chromosome 4 clone RP11-140N6 map 4,...    48   0.52   1
(AP003944) Oryza sativa Japonica Group genomic DNA, chromoso...    48   0.52   1
(EJ412873) 1093012161393 Global-Ocean-Sampling_GS-28-01-01-1...    48   0.52   1
(EJ341492) 1092963519587 Global-Ocean-Sampling_GS-28-01-01-1...    48   0.52   1
(DU959273) 230063 Tomato MboI BAC Library Solanum lycopersic...    48   0.52   1
(DY963583) CLSM13837.b1_I03.ab1 CLS(LMS) lettuce sativa Lact...    48   0.52   1
(DW103431) CLRX10036.b1_G13.ab1 CLR(XYZ) lettuce serriola La...    48   0.52   1
(BU008258) QGH7A17.yg.ab1 QG_EFGHJ lettuce serriola Lactuca ...    48   0.52   1
(BP999201) Perionyx excavatus mRNA, clone: PER1293.                48   0.52   1
(AE014852) Plasmodium falciparum 3D7 chromosome 12, section ...    34   0.54   9
(CR774185) Zebrafish DNA sequence from clone CH211-237H18 in...    34   0.55   6
(DU517908) 1098609818133 CHORI-243 Ovis aries genomic clone ...    34   0.60   3
(AE001393) Plasmodium falciparum 3D7 chromosome 2 section 30...    34   0.63   3
(EJ485946) 1095403500331 Global-Ocean-Sampling_GS-28-01-01-1...    34   0.66   3
(DE098685) Oryzias latipes DNA, clone: ola1-129J24.R, genomi...    40   0.69   2
(EU622475) Mandarina sp. A AD-2005 haplotype hh8 16S ribosom...    42   0.73   2
(EU622473) Mandarina sp. A AD-2005 haplotype hh4 16S ribosom...    42   0.73   2
(EU622433) Mandarina hahajimana haplotype hh17 16S ribosomal...    42   0.73   2
(EU622432) Mandarina hahajimana haplotype hh16 16S ribosomal...    42   0.73   2
(EU622431) Mandarina hahajimana haplotype hh15 16S ribosomal...    42   0.73   2
(EU622430) Mandarina hahajimana haplotype hh14 16S ribosomal...    42   0.73   2
(EU622429) Mandarina hahajimana haplotype hh13 16S ribosomal...    42   0.73   2
(EU622428) Mandarina hahajimana haplotype hh12 16S ribosomal...    42   0.73   2
(EU622427) Mandarina hahajimana haplotype hh11 16S ribosomal...    42   0.73   2
(EU622426) Mandarina hahajimana haplotype hh10 16S ribosomal...    42   0.73   2
(EU622425) Mandarina hahajimana haplotype hh4 16S ribosomal ...    42   0.73   2
(AE014845) Plasmodium falciparum 3D7 chromosome 12, section ...    38   0.74   7
(EU622474) Mandarina sp. A AD-2005 haplotype hh7 16S ribosom...    42   0.74   2
(AL360354) Plasmodium vivax telomeric YAC clone, complete fi...    40   0.75   7
(AE014298) Drosophila melanogaster chromosome X, complete se...    32   0.78   2
(CR855995) Zebrafish DNA sequence from clone DKEY-208I5 in l...    36   0.82   6
(AC122462) Mus musculus BAC clone RP24-294G11 from 3, comple...    40   0.87   3
(CR354396) Zebrafish DNA sequence from clone CH211-128M9 in ...    40   0.94   2
(AC008194) Drosophila melanogaster clone BACR49A05, complete...    32   1.1    2
(AC211087) Solanum lycopersicum chromosome 6 clone C06SLm013...    36   1.1    2
(AC209513) Solanum lycopersicum chromosome 6 clone C06HBa028...    36   1.1    2
(AC211061) Solanum lycopersicum chromosome 6 clone C06HBa019...    36   1.1    2
(AF549257) Mus musculus strain C57BL/6J chromosome 17 clone ...    42   1.1    3
(DE065409) Oryzias latipes DNA, clone: ola1-159G21.F, genomi...    40   1.2    2
(AM425370) Vitis vinifera contig VV78X132240.4, whole genome...    44   1.2    3
(AM468916) Vitis vinifera contig VV78X247212.2, whole genome...    42   1.2    2
(AC018220) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    32   1.2    2
(AL391355) Human DNA sequence from clone RP11-394G10 on chro...    38   1.2    5
(AE014836) Plasmodium falciparum 3D7 chromosome 11 section 1...    30   1.2    9
(AM440021) Vitis vinifera, whole genome shotgun sequence, co...    36   1.2    2
(AX345547) Sequence 618 from Patent WO0200928.                     38   1.3    3
(ER817135) PPTEH36TF Solanum tuberosum RHPOTKEY BAC ends Sol...    42   1.3    2
(CQ589031) Sequence 16789 from Patent WO0171042.                   32   1.3    2
(AC133314) Rattus norvegicus clone CH230-217K17, *** SEQUENC...    46   1.3    3
(EJ949715) 1093018936642 Global-Ocean-Sampling_GS-30-02-01-1...    40   1.3    2
(AX458578) Sequence 124 from Patent WO0246454.                     36   1.3    5
(EJ009643) 1095403607351 Global-Ocean-Sampling_GS-26-01-01-1...    40   1.3    2
(AC169707) Bos taurus clone CH240-255L9, WORKING DRAFT SEQUE...    44   1.4    5
(FJ147840) Daucus carota subsp. sativus clone BAC C238C10 ge...    34   1.4    2
(EJ960039) 1093018997686 Global-Ocean-Sampling_GS-30-02-01-1...    44   1.4    2
(DQ302224) Pristiphora erichsonii cytochrome oxidase subunit...    40   1.4    2
(EJ085604) 1095460098928 Global-Ocean-Sampling_GS-26-01-01-1...    34   1.4    2
(EJ256379) 1095349013354 Global-Ocean-Sampling_GS-27-01-01-1...    34   1.4    2
(EJ573611) 1092960073888 Global-Ocean-Sampling_GS-29-01-01-1...    34   1.4    2
(AY829608) Mandarina sp. A AD-2005 haplotype hh6 16S ribosom...    42   1.4    2
(DU269250) 1098589019875 CHORI-243 Ovis aries genomic clone ...    36   1.4    2
(AC232485) Brassica rapa subsp. pekinensis clone KBrB043N10,...    38   1.4    4
(EC317690) REPROTRACTF091687N19 POSSUM_01-POSSUM-C-REPROTRAC...    32   1.4    2
(AG924064) Drosophila melanogaster DNA, clone: DME1-003I21.R...    32   1.4    2
(EJ853518) 1093017903561 Global-Ocean-Sampling_GS-30-02-01-1...    44   1.4    2
(EK418284) 1095515483608 Global-Ocean-Sampling_GS-31-01-01-1...    40   1.5    2
(EK203828) 1095460066463 Global-Ocean-Sampling_GS-31-01-01-1...    44   1.5    2
(CZ545993) SRAA-aad65c05.b1 Strongyloides ratti whole genome...    38   1.5    2
(ET643862) JBVRI92TF JBVR Allium cepa genomic clone JBVRG_RH...    38   1.5    2
(AM636743) Entamoeba dispar GSS, clone dispar40g10.q1k.            32   1.5    3
(AE017263) Mesoplasma florum L1 complete genome.                   34   1.6    12
(ET647136) JBVRI92TR JBVR Allium cepa genomic clone JBVRG_RH...    38   1.6    2
(ER510106) 1093015439149 Global-Ocean-Sampling_GS-35-01-01-1...    42   1.6    2
(EJ199762) 1092344289603 Global-Ocean-Sampling_GS-27-01-01-1...    38   1.7    2
(ER436213) 1092963797122 Global-Ocean-Sampling_GS-35-01-01-1...    44   1.7    2
(EJ963539) 1093022021496 Global-Ocean-Sampling_GS-30-02-01-1...    40   1.7    2
(EJ885667) 1093018415462 Global-Ocean-Sampling_GS-30-02-01-1...    34   1.9    3
(DX540970) GH_MBb0032M22r GH_MBb Gossypium hirsutum genomic ...    38   1.9    2
(AC179929) Strongylocentrotus purpuratus clone R3-3031D6, WO...    44   2.1    5
(CR391936) Zebrafish DNA sequence from clone CH211-94L19 in ...    46   2.1    1
(AL935178) Zebrafish DNA sequence from clone CH211-180B9 in ...    46   2.1    1
(AL672307) Mouse DNA sequence from clone RP23-141N2 on chrom...    46   2.1    1
(AC199606) Rhesus Macaque  BAC CH250-145I6 () complete seque...    46   2.1    1
(EA427602) Sequence 77 from patent US 7332281.                     46   2.1    1
(DL007621) NOVEL THERAPEUTIC TARGETS IN CANCER.                    46   2.1    1
(EU815607) Stagetillus sp. WPM-2008 cytochrome oxidase subun...    46   2.1    1
(AY960805) Metaphire nanaoensis cytochrome c oxidase subunit...    46   2.1    1
(AL365179) Human DNA sequence from clone RP13-34C21 on chrom...    46   2.1    1
(AL139342) Human DNA sequence from clone RP5-1016N21 on chro...    46   2.1    1
(AC093281) Homo sapiens chromosome 5 clone RP11-414H23, comp...    46   2.1    1
(AC156358) Oryctolagus cuniculus clone LB1-126H18, WORKING D...    46   2.1    1
(AC133742) Rattus norvegicus clone CH230-91G12, *** SEQUENCI...    46   2.1    1
(CU695323) Brassica rapa subsp. pekinensis clone KBrH109L07,...    46   2.1    1
(AC044889) Homo sapiens chromosome 5 clone RP11-792C1 map 5,...    46   2.1    1
(AC026023) Homo sapiens chromosome X clone RP11-308D10 map X...    46   2.1    1
(AC204077) Macaca mulatta clone CH250-435A24, WORKING DRAFT ...    46   2.1    1
(AZ490207) 1M0323I04F Mouse 10kb plasmid UUGC1M library Mus ...    46   2.1    1
(AQ101535) HS_2265_A1_F07_MF CIT Approved Human Genomic Sper...    46   2.1    1
(EJ611377) 1092962048121 Global-Ocean-Sampling_GS-29-01-01-1...    46   2.1    1
(EJ066447) 1095458043623 Global-Ocean-Sampling_GS-26-01-01-1...    46   2.1    1
(DU932243) 356664 Tomato EcoRI BAC Library Solanum lycopersi...    46   2.1    1
(DU853328) 49010 Tomato HindIII BAC Library Solanum lycopers...    46   2.1    1
(DU387632) 1098313129337 CHORI-243 Ovis aries genomic clone ...    46   2.1    1
(DH838061) Rattus norvegicus DNA, BAC clone: RNB1-448B20, 3'...    46   2.1    1
(DH750461) Rattus norvegicus DNA, BAC clone: RNB1-328E17, 5'...    46   2.1    1
(DH451707) Macropus eugenii DNA with T7 primer, fosmid clone...    46   2.1    1
(CZ533707) SRAA-aac86g12.g1 Strongyloides ratti whole genome...    46   2.1    1
(CL576321) OB__Ba0026E19.r OB__Ba Oryza brachyantha genomic ...    46   2.1    1
(EG339863) KAAN-aaa25a08.g1 Platypus_EST_Cell_line_1.0-4.0kb...    46   2.1    1
(CF335897) JMT--05-M03.b1 AtJMT-overexpressing transgenic ri...    46   2.1    1
(AW193829) xm30h02.x1 NCI_CGAP_GC6 Homo sapiens cDNA clone I...    46   2.1    1
(Z99117) Bacillus subtilis complete genome (section 14 of 21...    46   2.1    1
(U93875) Bacillus subtilis alcohol dehydrogenase (adhB) gene...    46   2.1    1
(CP000413) Lactobacillus gasseri ATCC 33323, complete genome.      46   2.1    1
(CP000312) Clostridium perfringens SM101, complete genome.         46   2.1    1
(EU024653) Polistes sp. MD1 mitochondrion, partial genome.         40   2.1    3
(AJ928296) Theileria annulata EST, clone tam017e08_q1k.            40   2.1    2
(AP004499) Lotus japonicus genomic DNA, chromosome 2, clone:...    40   2.2    5
(FM248282) Caenorhabditis elegans EST, clone                       36   2.3    2
(DD194611) Method and nucleic acids for the analysis of a co...    36   2.4    4
(DD194609) Method and nucleic acids for the analysis of a co...    36   2.4    4
(AX825171) Sequence 5 from Patent WO03072812.                      36   2.4    4
(AX825169) Sequence 3 from Patent WO03072812.                      36   2.4    4
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098...    34   2.5    7
(AC139697) Homo sapiens 3 BAC RP11-812D23 (Roswell Park Canc...    34   2.5    3
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    32   2.5    10
(AC169146) Sorex araneus clone SA_Ba-134G16, WORKING DRAFT S...    38   2.7    3
(AC223256) Bos taurus clone CH240-424K24, WORKING DRAFT SEQU...    42   2.7    3
(AL080314) Human DNA sequence from clone RP1-60O19 on chromo...    42   3.0    3
(AE014819) Plasmodium falciparum 3D7 chromosome 14 section 4...    36   3.1    8
(CP000685) Flavobacterium johnsoniae UW101, complete genome.       32   3.1    2
(CP000727) Clostridium botulinum A str. Hall, complete genome.     38   3.2    14
(EJ771632) 1092969800372 Global-Ocean-Sampling_GS-30-02-01-1...    34   3.3    3
(AE014844) Plasmodium falciparum 3D7 chromosome 12, section ...    32   3.4    9
(CU179680) Mycoplasma agalactiae PG2 chromosome, complete se...    32   3.5    2
(AQ886751) HS_5545_A2_A06_SP6E RPCI-11 Human Male BAC Librar...    40   3.6    2
(AC154479) Mus musculus BAC clone RP24-135I6 from chromosome...    42   3.7    4
(EA703630) Sequence 82509 from patent US 7365185.                  40   3.7    3
(AM436435) Vitis vinifera, whole genome shotgun sequence, co...    38   3.7    2
(DH369753) Oryzias latipes Fosmid clone:GOLWFno754_m21, reve...    36   3.8    3
(AC221298) Bos taurus clone CH240-402L21, WORKING DRAFT SEQU...    34   4.0    2
(AC190750) Zea mays chromosome 2 clone ZMMBBb-327C13; ZMMBBb...    32   4.0    2
(AC206638) Zea mays chromosome 2 clone ZMMBBb-171M17; ZMMBBb...    32   4.0    2
(AC155401) Zea mays strain B73 clone ZMMBBb0171M17, *** SEQU...    32   4.0    2
(CP000726) Clostridium botulinum A str. ATCC 19397, complete...    38   4.1    14
(AC213428) Populus trichocarpa clone POP094-E14, complete se...    34   4.1    2
(AM441646) Vitis vinifera contig VV78X224996.2, whole genome...    32   4.1    3
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    30   4.3    9
(BD453025) Diagnosis of Diseases Associated with tumor suppr...    36   4.3    4
(AX344503) Sequence 350 from Patent WO0200926.                     36   4.3    4
(AX251504) Sequence 472 from Patent WO0168912.                     36   4.3    4
(AC148218) Medicago truncatula clone mth2-21j14, WORKING DRA...    36   4.4    5
(AC115612) Dictyostelium discoideum chromosome 2 map 6245135...    34   4.5    6
(BH978238) ode13h05.g1 B.oleracea002 Brassica oleracea genom...    40   4.6    2
(BH987020) oef80a11.b1 B.oleracea002 Brassica oleracea genom...    40   4.6    2
(BX663508) Zebrafish DNA sequence from clone CH211-144B6 in ...    38   4.7    4
(AM486335) Vitis vinifera contig VV78X180087.11, whole genom...    32   4.7    2
(EK423152) 1095515641950 Global-Ocean-Sampling_GS-31-01-01-1...    38   5.0    2
(BX936327) Zebrafish DNA sequence from clone DKEY-21E10 in l...    42   5.0    3
(EK130827) 1093009289876 Global-Ocean-Sampling_GS-31-01-01-1...    42   5.1    2
(EJ646380) 1092215030819 Global-Ocean-Sampling_GS-30-01-01-1...    38   5.1    2
(DN003047) JGI_CAAQ4433.rev NIH_XGC_tropHrt1 Xenopus (Silura...    36   5.2    2
(AP007874) Lotus japonicus genomic DNA, chromosome 1, clone:...    44   5.2    5
(BZ720269) PUDAL01TB ZM_0.6_1.0_KB Zea mays genomic clone ZM...    32   5.2    2
(AY829609) Mandarina hirasei haplotype hh1 16S ribosomal RNA...    40   5.2    2
(BZ748478) PUDAL01TD ZM_0.6_1.0_KB Zea mays genomic clone ZM...    32   5.2    2
(ET841817) CHO_OF270xl02r1.ab1 CHO_OF Nicotiana tabacum geno...    34   5.3    2
(FH464069) CHO_OF4954xd14f1.ab1 CHO_OF4 Nicotiana tabacum ge...    32   5.3    2
(FM967586) Glossina morsitans morsitans EST, clone GMsg79h07...    34   5.3    2
(BZ723047) PUDAK12TB ZM_0.6_1.0_KB Zea mays genomic clone ZM...    32   5.3    2
(AC161124) Pan troglodytes BAC clone CH251-660C11 from chrom...    40   5.3    3
(CG341887) OGYAK38TV ZM_0.7_1.5_KB Zea mays genomic clone ZM...    32   5.3    2
(AC200518) Pongo abelii BAC clone CH276-405B23 from chromoso...    34   5.3    7
(BH637611) 1008017G02.x1 1008 - RescueMu Grid I Zea mays gen...    32   5.4    2
(BH637526) 1008017C02.x1 1008 - RescueMu Grid I Zea mays gen...    32   5.4    2
(BH637517) 1008017B09.x1 1008 - RescueMu Grid I Zea mays gen...    32   5.4    2
(BZ149255) CH230-453J5.TV CHORI-230 Segment 2 Rattus norvegi...    38   5.4    2
(EJ159125) 1092344041238 Global-Ocean-Sampling_GS-27-01-01-1...    38   5.6    2
(EJ646166) 1092215010064 Global-Ocean-Sampling_GS-30-01-01-1...    38   5.6    2
(EK359543) 1095468896609 Global-Ocean-Sampling_GS-31-01-01-1...    42   5.8    2
(CZ501122) GMW2-3B17a.g1 GMW2 Glycine max genomic, genomic s...    34   5.9    2
(AC189422) Brassica rapa subsp. pekinensis clone KBrB063M21,...    40   6.1    5
(DQ665758) Galianora bryicola cytochrome oxidase subunit 1 (...    40   6.2    2
(EK435015) 1095521026961 Global-Ocean-Sampling_GS-31-01-01-1...    38   6.2    2
(CW951484) TcB37.1_A01_SP6 Tribolium BAC library Tribolium c...    40   6.4    2
(BZ071666) lju11h09.b1 B.oleracea002 Brassica oleracea genom...    32   6.4    3
(AP010292) Lotus japonicus genomic DNA, chromosome 1, clone:...    36   6.5    5
(AC202328) Medicago truncatula clone mth2-16m15, WORKING DRA...    36   6.7    4
(AC161561) Bos taurus clone CH240-106B8, WORKING DRAFT SEQUE...    38   6.7    5
(AP003576) Oryza sativa Japonica Group genomic DNA, chromoso...    40   6.9    3
(AC233457) Solanum tuberosum chromosome 5 clone RH092A08, **...    40   7.0    3
(AP005735) Oryza sativa Japonica Group genomic DNA, chromoso...    40   7.1    4
(AC006281) Plasmodium falciparum chromosome 12 clone PFYACB8...    34   7.1    9
(BZ400315) EINCA62TF EI_10_12_KB Entamoeba invadens genomic ...    30   7.1    3
(AC187335) Canis Familiaris chromosome 2, clone XX-310B7, co...    36   7.4    6
(AM473202) Vitis vinifera, whole genome shotgun sequence, co...    38   7.5    2
(AF106589) Caenorhabditis elegans cosmid Y44E3A, complete se...    34   7.5    5
(DV969339) GC07346 Gracilaria changii cDNA library Gracilari...    40   7.6    2
(EJ745016) 1092962052987 Global-Ocean-Sampling_GS-30-02-01-1...    34   7.6    3
(EG998434) 031021NL19EPD00011C11 NL19EPD Neotyphodium lolii ...    42   7.8    2
(EA700819) Sequence 79698 from patent US 7365185.                  40   8.1    2
(CU633783) Zebrafish DNA sequence from clone CH73-253N14 in ...    44   8.1    1
(CR318647) Zebrafish DNA sequence from clone CH211-159M16 in...    44   8.1    1
(BV522371) G591P68734RA9.T0 Clint Pan troglodytes verus STS ...    44   8.1    1
(AL805896) Mouse DNA sequence from clone RP23-402I8 on chrom...    44   8.1    1
(AL592450) Mouse DNA sequence from clone RP23-282N6 on chrom...    44   8.1    1
(AC124706) Mus musculus BAC clone RP24-69G17 from chromosome...    44   8.1    1
(AP008216) Oryza sativa (japonica cultivar-group) genomic DN...    44   8.1    1
(AP008214) Oryza sativa (japonica cultivar-group) genomic DN...    44   8.1    1
(AP003871) Oryza sativa Japonica Group genomic DNA, chromoso...    44   8.1    1
(AM474919) Vitis vinifera contig VV78X095527.10, whole genom...    44   8.1    1
(AM452701) Vitis vinifera contig VV78X116019.10, whole genom...    44   8.1    1
(AC189430) Brassica rapa subsp. pekinensis clone KBrB067F22,...    44   8.1    1
(AC125481) Medicago truncatula clone mth2-15n13, complete se...    44   8.1    1
(AC114474) Genomic sequence for Oryza sativa, Nipponbare str...    44   8.1    1
(EA742591) Sequence 14037 from patent US 7368527.                  44   8.1    1
(EA694663) Sequence 73542 from patent US 7365185.                  44   8.1    1
(EA100462) Sequence 2090 from patent US 7193069.                   44   8.1    1
(DL229214) Novel full length cDNA.                                 44   8.1    1
(DL179166) Novel full length cDNA.                                 44   8.1    1
(CS168845) Sequence 2090 from Patent EP1580263.                    44   8.1    1
(AX834966) Sequence 2090 from Patent EP1347046.                    44   8.1    1
(GC701411) Sequence 16656 from patent US 6812339.                  44   8.1    1
(GC701410) Sequence 16655 from patent US 6812339.                  44   8.1    1
(GC701409) Sequence 16654 from patent US 6812339.                  44   8.1    1
(GC697376) Sequence 12621 from patent US 6812339.                  44   8.1    1
(GC697375) Sequence 12620 from patent US 6812339.                  44   8.1    1
(GC696837) Sequence 12081 from patent US 6812339.                  44   8.1    1
(AL360080) Human DNA sequence from clone RP11-483I8 on chrom...    44   8.1    1
(AL136368) Human DNA sequence from clone RP11-313D6 on chrom...    44   8.1    1
(AL133384) Human DNA sequence from clone RP11-317F20 on chro...    44   8.1    1
(AL133328) Human DNA sequence from clone RP13-21D1 on chromo...    44   8.1    1
(AL109921) Human DNA sequence from clone RP3-383J4 on chromo...    44   8.1    1
(AK097703) Homo sapiens cDNA FLJ40384 fis, clone TESTI2035796.     44   8.1    1
(AK093606) Homo sapiens cDNA FLJ36287 fis, clone THYMU2003499.     44   8.1    1
(AC116653) Homo sapiens BAC clone RP11-1233B13 from 4, compl...    44   8.1    1
(AC092112) Homo sapiens 12 BAC RP11-134N1 (Roswell Park Canc...    44   8.1    1
(AC087888) Homo sapiens 12 BAC RP11-228G3 (Roswell Park Canc...    44   8.1    1
(AC079408) Homo sapiens 12q BAC RP11-601I4 (Roswell Park Can...    44   8.1    1
(AC010737) Homo sapiens BAC clone RP11-439L24 from Y, comple...    44   8.1    1
(AC153066) Bos taurus clone CH240-14B21, *** SEQUENCING IN P...    44   8.1    1
(AC149246) Otolemur garnettii clone CH256-37O7, WORKING DRAF...    44   8.1    1
(AC148726) Pongo abelii clone CH253-58O19, WORKING DRAFT SEQ...    44   8.1    1
(AC142422) Rattus norvegicus clone CH230-64K9, WORKING DRAFT...    44   8.1    1
(AC134710) Rattus norvegicus clone CH230-472H2, *** SEQUENCI...    44   8.1    1
(AC129861) Rattus norvegicus clone CH230-169I22, WORKING DRA...    44   8.1    1
(AC118908) Rattus norvegicus clone CH230-24K9, *** SEQUENCIN...    44   8.1    1
(AC111910) Rattus norvegicus clone CH230-130B6, WORKING DRAF...    44   8.1    1
(AC111748) Rattus norvegicus clone CH230-149L2, *** SEQUENCI...    44   8.1    1
(AC111518) Rattus norvegicus clone CH230-142F15, WORKING DRA...    44   8.1    1
(AC111312) Rattus norvegicus clone CH230-237D10, *** SEQUENC...    44   8.1    1
(AC109685) Rattus norvegicus clone CH230-78J24, WORKING DRAF...    44   8.1    1
(AC106567) Rattus norvegicus clone CH230-52K15, WORKING DRAF...    44   8.1    1
(AC103305) Rattus norvegicus clone CH230-189C3, *** SEQUENCI...    44   8.1    1
(AC096532) Homo sapiens chromosome 1 clone RP11-295P8, WORKI...    44   8.1    1
(AC096139) Rattus norvegicus clone CH230-30D1, WORKING DRAFT...    44   8.1    1
(CU137704) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.1    1
(CT573487) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   8.1    1
(AP008173) Lotus japonicus genomic DNA, chromosome 1, clone:...    44   8.1    1
(AP007512) Lotus japonicus genomic DNA, chromosome 4, clone:...    44   8.1    1
(AP007446) Lotus japonicus genomic DNA, chromosome 4, clone:...    44   8.1    1
(AC234750) Brassica rapa subsp. pekinensis chromosome Linkag...    44   8.1    1
(AC232969) Procavia capensis clone CH280-478I3, WORKING DRAF...    44   8.1    1
(AC230822) Bos taurus clone CH240-498I16, WORKING DRAFT SEQU...    44   8.1    1
(AC230621) Bos taurus clone CH240-503D13, WORKING DRAFT SEQU...    44   8.1    1
(AC226654) Procavia capensis clone CH280-424K17, WORKING DRA...    44   8.1    1
(AC224939) Bos taurus clone CH240-471J4, WORKING DRAFT SEQUE...    44   8.1    1
(AC218679) Bos taurus clone CH240-297G7, WORKING DRAFT SEQUE...    44   8.1    1
(AC218189) Bos taurus clone CH240-291L14, WORKING DRAFT SEQU...    44   8.1    1
(AC210479) Oryza glaberrima clone OG_BBa0067A06, *** SEQUENC...    44   8.1    1
(AC181789) Strongylocentrotus purpuratus clone R3-1029L3, WO...    44   8.1    1
(AC174122) Strongylocentrotus purpuratus clone R3-3012A21, W...    44   8.1    1
(AC170366) Bos taurus clone CH240-237K17, WORKING DRAFT SEQU...    44   8.1    1
(AC012528) Homo sapiens clone RP11-45C19, WORKING DRAFT SEQU...    44   8.1    1
(BH172035) SALK_005158 Arabidopsis thaliana TDNA insertion l...    44   8.1    1
(AZ088278) RPCI-23-457K14.TJ RPCI-23 Mus musculus genomic cl...    44   8.1    1
(AQ468413) HS_5211_B2_D10_T7A RPCI-11 Human Male BAC Library...    44   8.1    1
(FH314352) CHO_OF4483xp14r1.ab1 CHO_OF4 Nicotiana tabacum ge...    44   8.1    1
(ER494114) 1093015340524 Global-Ocean-Sampling_GS-35-01-01-1...    44   8.1    1
(ER453812) 1092963860093 Global-Ocean-Sampling_GS-35-01-01-1...    44   8.1    1
(EK203145) 1095460064525 Global-Ocean-Sampling_GS-31-01-01-1...    44   8.1    1
(EK131798) 1093009953034 Global-Ocean-Sampling_GS-31-01-01-1...    44   8.1    1
(EK011918) 1092955197348 Global-Ocean-Sampling_GS-31-01-01-1...    44   8.1    1
(EJ996525) 1093023092220 Global-Ocean-Sampling_GS-30-02-01-1...    44   8.1    1
(EJ954804) 1093018967304 Global-Ocean-Sampling_GS-30-02-01-1...    44   8.1    1
(EJ939380) 1093018856306 Global-Ocean-Sampling_GS-30-02-01-1...    44   8.1    1
(AM624791) Entamoeba dispar GSS, clone dispar112e03.q1k.           44   8.1    1
(EJ599683) 1092961127768 Global-Ocean-Sampling_GS-29-01-01-1...    44   8.1    1
(EJ560229) 1092959544487 Global-Ocean-Sampling_GS-29-01-01-1...    44   8.1    1
(EJ348989) 1092963568539 Global-Ocean-Sampling_GS-28-01-01-1...    44   8.1    1
(EJ231057) 1092402599565 Global-Ocean-Sampling_GS-27-01-01-1...    44   8.1    1
(EI815560) POTI835TF Solanum tuberosum RHPOTKEY BAC ends Sol...    44   8.1    1
(ED136867) AUAC-aat21f03.g1 Ascaris suum whole genome shotgu...    44   8.1    1
(ED027591) SBA025_B06.f Sugar beet BAC library USH20 (Code S...    44   8.1    1
(DH645422) Rattus norvegicus DNA, BAC clone: RNB1-186I20, 5'...    44   8.1    1
(DE400525) Bombyx mori genomic DNA, BAC clone:1L8A.                44   8.1    1
(CW287121) 104_765_11411251_148_35525_078 Sorghum methylatio...    44   8.1    1
(CW287120) 104_765_11411251_116_35521_078 Sorghum methylatio...    44   8.1    1
(CU285467) Equus caballus GSS, BAC clone CH241-447N21, SP6 e...    44   8.1    1
(CL393499) ZMMBBb0199A05f ZMMBBb (HindIII) Zea mays subsp. m...    44   8.1    1
(CC955802) BOIEI25TR BO_1.4_1.6_KB_nuc Brassica oleracea gen...    44   8.1    1
(CC550477) CH240_435K13.TARBAC13P2 CHORI-240 Bos taurus geno...    44   8.1    1
(CC237121) CH261-132K20_Sp6.1 CH261 Gallus gallus genomic cl...    44   8.1    1
(BZ878131) CH240_278B20.TJ CHORI-240 Bos taurus genomic clon...    44   8.1    1
(BZ339894) ic35e04.b1 WGS-SbicolorF (JM107 adapted methyl fi...    44   8.1    1
(BX159161) Danio rerio genomic clone DKEY-125I1, genomic sur...    44   8.1    1
(EL449738) CHTM28324.b1_H02.ab1 CHT(LMS) Jerusalem artichoke...    44   8.1    1
(EG626887) EMBRYOF101112N7 POSSUM_01-POSSUM-C-EMBRYO-2KB Tri...    44   8.1    1
(DV260327) AEDAQ26TO Aedes re-sequencing Aedes aegypti cDNA ...    44   8.1    1
(DB103660) Homo sapiens cDNA clone THYMU2003499, 5' end, mRN...    44   8.1    1
(DA958613) Homo sapiens cDNA clone SPLEN2038342, 5' end, mRN...    44   8.1    1
(DA820248) Homo sapiens cDNA clone PERIC1000124, 5' end, mRN...    44   8.1    1
(FG542287) OtP018E12_020207d Onthophagus taurus pupal librar...    44   8.1    1
(FG539234) OtL004A05_112706d Onthophagus taurus larval libra...    44   8.1    1
(CR954246) Pseudoalteromonas haloplanktis str. TAC125 chromo...    44   8.1    1
(CP000903) Bacillus weihenstephanensis KBAB4, complete genome.     44   8.1    1
(CP000786) Leptospira biflexa serovar Patoc strain 'Patoc 1 ...    44   8.1    1
(CP000777) Leptospira biflexa serovar Patoc strain 'Patoc 1 ...    44   8.1    1
(AP008971) Finegoldia magna ATCC 29328 DNA, complete genome.       44   8.1    1
(EJ808000) 1093017471323 Global-Ocean-Sampling_GS-30-02-01-1...    32   8.2    3
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255...    36   8.3    14
(AC167114) Dasypus novemcinctus clone VMRC5-428G17, WORKING ...    38   8.5    3
(AC187471) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB...    34   8.5    5
(EA685173) Sequence 64052 from patent US 7365185.                  40   8.5    3
(AP003857) Oryza sativa Japonica Group genomic DNA, chromoso...    40   8.8    2
(BS000665) Pan troglodytes chromosome Y clone:PTB-114E01, co...    36   8.8    6
(ET820206) CHO_OF758xm21r1.ab1 CHO_OF Nicotiana tabacum geno...    34   8.9    2
(AC165771) Bos taurus clone CH240-160B3, WORKING DRAFT SEQUE...    38   8.9    3
(AC119411) Medicago truncatula clone mth2-23c14, complete se...    40   9.2    5
(EA634458) Sequence 13337 from patent US 7365185.                  36   9.2    2
(CU469542) Zebrafish DNA sequence from clone CH73-21F1 in li...    32   9.2    4
(AC188535) Canis familiaris chromosome 2, clone XX-332D5, co...    36   9.5    6
(AC004688) Plasmodium falciparum chromosome 12 clone PFYAC69...    34   9.5    7
(EK204354) 1095460068684 Global-Ocean-Sampling_GS-31-01-01-1...    36   9.5    3
(AM465666) Vitis vinifera contig VV78X057834.10, whole genom...    36   9.6    4

>(AU264008) Dictyostelium discoideum vegetative cDNA clone:VSD425,
           5' end single read.
          Length = 527

 Score =  547 bits (276), Expect(3) = 0.0
 Identities = 276/276 (100%)
 Strand = Plus / Plus


Query: 47  ataattaataatttcaaaaattttaatatgtttagacaattaaataaaacaacaacaaag 106
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47  ataattaataatttcaaaaattttaatatgtttagacaattaaataaaacaacaacaaag 106


Query: 107 aattttatgctctcattgagaggaactactgttagatctgtttcaactggaggatattat 166
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 aattttatgctctcattgagaggaactactgttagatctgtttcaactggaggatattat 166


Query: 167 aaaagtaatgaagaattagataaaataaagaaacaagatcttcctgatgaaagagttaat 226
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 aaaagtaatgaagaattagataaaataaagaaacaagatcttcctgatgaaagagttaat 226


Query: 227 gaaataatcagacaagctgaagaacaaaagacacatggattaagttcaattgaaactgaa 286
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 gaaataatcagacaagctgaagaacaaaagacacatggattaagttcaattgaaactgaa 286


Query: 287 ggtgcagcaaatatccataaggctcaaaagaaaatc 322
           ||||||||||||||||||||||||||||||||||||
Sbjct: 287 ggtgcagcaaatatccataaggctcaaaagaaaatc 322

 Score =  186 bits (94), Expect(3) = 0.0
 Identities = 94/94 (100%)
 Strand = Plus / Plus


Query: 325 aaaagatggttccaaaagatgttgaaaagtttgattaaaaataatttattttcaacataa 384
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaaagatggttccaaaagatgttgaaaagtttgattaaaaataatttattttcaacataa 383


Query: 385 ttcatatattagtaatataataacatttcccatc 418
           ||||||||||||||||||||||||||||||||||
Sbjct: 384 ttcatatattagtaatataataacatttcccatc 417

 Score = 71.9 bits (36), Expect(3) = 0.0
 Identities = 36/36 (100%)
 Strand = Plus / Plus


Query: 1  caaaaattaaaaaatacatttatagaaatatataac 36
          ||||||||||||||||||||||||||||||||||||
Sbjct: 1  caaaaattaaaaaatacatttatagaaatatataac 36

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 791,205,875
Number of extensions: 61819689
Number of successful extensions: 6431007
Number of sequences better than 10.0: 383
Length of query: 798
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 774
Effective length of database: 99,340,224,878
Effective search space: 76889334055572
Effective search space used: 76889334055572
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.18
Homology vs Protein 
Query= Contig-U01788-1 (Contig-U01788-1Q) /CSM_Contig/Contig-U01788-1Q.Seq.d
         (798 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q73MX5) RecName: Full=V-type ATP synthase subunit E; AltName: F...    35   2.2
FN357341_20(FN357341|pid:none) Schistosoma mansoni genome sequen...    34   4.8
AY863213_5(AY863213|pid:none) Smittium culisetae mitochondrion, ...    33   8.2

>(Q73MX5) RecName: Full=V-type ATP synthase subunit E; AltName:
           Full=V-ATPase subunit E;
           &AE017226_1370(AE017226|pid:none)
          Length = 205

 Score = 35.4 bits (80), Expect = 2.2
 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
 Frame = +2

Query: 176 EELDKIKKQDLP--DERVNEIIRQAEEQKTHGLSSIETEGAANIHKAQKKILK 328
           E +DKIKK  +   DE+  EIIR AEE+  + +   E E   ++ KA+ + L+
Sbjct: 7   ELVDKIKKDGVAAADEKAAEIIRAAEEKAKNIIEKAEAEAQESVKKAEAEALR 59

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 654,186,516
Number of extensions: 9295193
Number of successful extensions: 27176
Number of sequences better than 10.0: 3
Number of HSP's gapped: 27168
Number of HSP's successfully gapped: 3
Length of query: 266
Length of database: 1,051,180,864
Length adjustment: 126
Effective length of query: 140
Effective length of database: 643,374,430
Effective search space: 90072420200
Effective search space used: 90072420200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.23  gvh: 0.12  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.36  mip: 0.00
 nuc: 4.24  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: nuclear
	 12.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for Contig-U01788-1 is nuc
VS (DIR, S) 2
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 7
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0