Contig-U11511-1
Contig ID Contig-U11511-1
Contig update 2002.12.18
Contig sequence
>Contig-U11511-1 (Contig-U11511-1Q) /CSM_Contig/Contig-U11511-1Q.Seq.d
ACTGTTGGCCTACTGGTATTTTTAATTAATTTCATAGTGGAATCACACAC
ATTTTTTAAATTCATTTTTTATTTTCATTAACATTTTTTTTTTTAANATT
AGTTTCAAAAAAAAAANNNNNNNNN----------CTTTATTACCAATTG
ATAATCCTGATATTCCACTTTTAATTCTCTTATCGATTGTAGGTTATAAT
TATAAAGAAGCAAAATCAAAATATCCAAAGATTGAAGAATATTATGGTAG
AGGTGTAATCTCGATTCAAAATTTTAGTGTTTTCATGTCACCATTACTCA
TGAAATATTATTTACAATATGCAGTGGATTTTAATAAAGATTTTGGTGGT
CATGTTTTTTCTGTAGCTTTTACGATTTTGAAAAGATTCTCTCAAGAGAT
TTTCGTTTGGAATACATTTTATCAAGAGTTTTTCCAATTGAAATTAGCAG
CTCACAACTTTTTAAATGATCATTACCAACAATTCTCTTCAGCAGATCAA
AAGATTACACTAAGATCATTCTTTTATCCAAATCAAAAGTTAAACTCTGA
ATTTGAAGATAAGACAAATTCAAACAATGATCGTTCTTTGGTTACAGATT
TCAATTATAAATTCGGTATTGAATCATATTGGAAGAAATCAATCGAGTTG
TACCATGATCCATCGATGGTTGACGATCAAAATAGAAATATTGGTTCTTC
AACTCAAACTATTTACTCACCACCAGATTTAGATTACTTTTCAGTTGATG
TCGATAAAACTGTTAGAGATTGCTTCAATCAAAATACAAAATACAGAGTA
GATAATGATATGCTTTTATTTTTCACAAGAAAATATTCACAATATTCAAA
CTCTCCAAAATTTAAAATTATCAATCCAATTGAAAGTAATTATTATTCTT
TCTTAACTTCTTTTATTGATAGTGTAGAGTTATAAAATAA

Gap gap included
Contig length 930
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 1481494
End point 1480587
Strand (PLUS/MINUS) MINUS
Number of clones 6
Number of EST 7
Link to clone list U11511
List of clone(s)

est1=AHP232F,1,116
est2=AHD423Z,117,786
est3=SHC162Z,121,885
est4=AHB613Z,161,804
est5=CHG171Z,161,728
est6=SLE569Z,229,922
est7=AHP232Z,297,729
Translated Amino Acid sequence
llaywyf*lis*WNHTHFLNSFFIFINIFFFXISFKKKXXX---

---LLPIDNPDIPLLILLSIVGYNYKEAKSKYPKIEEYYGRGVISIQNFSVFMSPLLMKY
YLQYAVDFNKDFGGHVFSVAFTILKRFSQEIFVWNTFYQEFFQLKLAAHNFLNDHYQQFS
SADQKITLRSFFYPNQKLNSEFEDKTNSNNDRSLVTDFNYKFGIESYWKKSIELYHDPSM
VDDQNRNIGSSTQTIYSPPDLDYFSVDVDKTVRDCFNQNTKYRVDNDMLLFFTRKYSQYS
NSPKFKIINPIESNYYSFLTSFIDSVEL*n


Translated Amino Acid sequence (All Frames)
Frame A:
tvgllvflinfiveshtffkfifyfh*hfff*x*fqkkxxx---

---lyyqliilifhf*fsyrl*viiikkqnqniqrlknimvev*srfkilvfschhys*n
iiynmqwilikilvvmffl*llrf*kdslkrfsfgihfiksfsn*n*qlttf*miitnns
lqqikrlh*dhsfiqiks*tlnlkirqiqtmivlwlqisiinsvlnhigrnqssctmihr
wltikieilvlqlklfthhqi*itfqlmsiklleiasikiqnte*imicfyfsqenihni
qtlqnlklsiqlkviiils*lllliv*syki

Frame B:
llaywyf*lis*WNHTHFLNSFFIFINIFFFXISFKKKXXX---

---fitn**s*ystfnslidcrl*l*rskikiskd*rilw*rcnldskf*cfhvtithei
lfticsgf**rfwwscffcsfydfekilsrdfrleyilsrvfpieisssqlfk*slptil
fsrskdytkiillskskvkl*i*r*dkfkq*sffgyrfql*iry*iileeinrvvp*sid
g*rsk*kywffnsnyllttrfrllfs*cr*nc*rllqskykiqsr**yafifhkkiftif
klski*nyqsn*k*llfflnffy**crvik*

Frame C:
cwptgifn*fhsgithif*ihflfsltffflxlvskkkxxx---

---LLPIDNPDIPLLILLSIVGYNYKEAKSKYPKIEEYYGRGVISIQNFSVFMSPLLMKY
YLQYAVDFNKDFGGHVFSVAFTILKRFSQEIFVWNTFYQEFFQLKLAAHNFLNDHYQQFS
SADQKITLRSFFYPNQKLNSEFEDKTNSNNDRSLVTDFNYKFGIESYWKKSIELYHDPSM
VDDQNRNIGSSTQTIYSPPDLDYFSVDVDKTVRDCFNQNTKYRVDNDMLLFFTRKYSQYS
NSPKFKIINPIESNYYSFLTSFIDSVEL*n

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U11511-1 (Contig-U11511-1Q)
/CSM_Contig/Contig-U11511-1Q.Seq.d
(940 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U11511-1 (Contig-U11511-1Q) /CSM_Contig/Conti... 1596 0.0
Contig-U13873-1 (Contig-U13873-1Q) /CSM_Contig/Conti... 52 1e-06
Contig-U10989-1 (Contig-U10989-1Q) /CSM_Contig/Conti... 50 4e-06
Contig-U11910-1 (Contig-U11910-1Q) /CSM_Contig/Conti... 48 2e-05
Contig-U07916-1 (Contig-U07916-1Q) /CSM_Contig/Conti... 48 2e-05
Contig-U14248-1 (Contig-U14248-1Q) /CSM_Contig/Conti... 46 7e-05
Contig-U10823-1 (Contig-U10823-1Q) /CSM_Contig/Conti... 46 7e-05
Contig-U06098-1 (Contig-U06098-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U12108-1 (Contig-U12108-1Q) /CSM_Contig/Conti... 40 0.004
Contig-U12040-1 (Contig-U12040-1Q) /CSM_Contig/Conti... 40 0.004

>Contig-U11511-1 (Contig-U11511-1Q) /CSM_Contig/Contig-U11511-1Q.Seq.d
Length = 940

Score = 1596 bits (805), Expect = 0.0
Identities = 805/805 (100%)
Strand = Plus / Plus


Query: 136 ctttattaccaattgataatcctgatattccacttttaattctcttatcgattgtaggtt 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 ctttattaccaattgataatcctgatattccacttttaattctcttatcgattgtaggtt 195


Query: 196 ataattataaagaagcaaaatcaaaatatccaaagattgaagaatattatggtagaggtg 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 ataattataaagaagcaaaatcaaaatatccaaagattgaagaatattatggtagaggtg 255


Query: 256 taatctcgattcaaaattttagtgttttcatgtcaccattactcatgaaatattatttac 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 taatctcgattcaaaattttagtgttttcatgtcaccattactcatgaaatattatttac 315


Query: 316 aatatgcagtggattttaataaagattttggtggtcatgttttttctgtagcttttacga 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 aatatgcagtggattttaataaagattttggtggtcatgttttttctgtagcttttacga 375


Query: 376 ttttgaaaagattctctcaagagattttcgtttggaatacattttatcaagagtttttcc 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ttttgaaaagattctctcaagagattttcgtttggaatacattttatcaagagtttttcc 435


Query: 436 aattgaaattagcagctcacaactttttaaatgatcattaccaacaattctcttcagcag 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 aattgaaattagcagctcacaactttttaaatgatcattaccaacaattctcttcagcag 495


Query: 496 atcaaaagattacactaagatcattcttttatccaaatcaaaagttaaactctgaatttg 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 atcaaaagattacactaagatcattcttttatccaaatcaaaagttaaactctgaatttg 555


Query: 556 aagataagacaaattcaaacaatgatcgttctttggttacagatttcaattataaattcg 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 aagataagacaaattcaaacaatgatcgttctttggttacagatttcaattataaattcg 615


Query: 616 gtattgaatcatattggaagaaatcaatcgagttgtaccatgatccatcgatggttgacg 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gtattgaatcatattggaagaaatcaatcgagttgtaccatgatccatcgatggttgacg 675


Query: 676 atcaaaatagaaatattggttcttcaactcaaactatttactcaccaccagatttagatt 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 atcaaaatagaaatattggttcttcaactcaaactatttactcaccaccagatttagatt 735


Query: 736 acttttcagttgatgtcgataaaactgttagagattgcttcaatcaaaatacaaaataca 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 acttttcagttgatgtcgataaaactgttagagattgcttcaatcaaaatacaaaataca 795


Query: 796 gagtagataatgatatgcttttatttttcacaagaaaatattcacaatattcaaactctc 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 gagtagataatgatatgcttttatttttcacaagaaaatattcacaatattcaaactctc 855


Query: 856 caaaatttaaaattatcaatccaattgaaagtaattattattctttcttaacttctttta 915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 caaaatttaaaattatcaatccaattgaaagtaattattattctttcttaacttctttta 915


Query: 916 ttgatagtgtagagttataaaataa 940
|||||||||||||||||||||||||
Sbjct: 916 ttgatagtgtagagttataaaataa 940


Score = 97.6 bits (49), Expect = 2e-20
Identities = 49/49 (100%)
Strand = Plus / Plus


Query: 1 actgttggcctactggtatttttaattaatttcatagtggaatcacaca 49
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 actgttggcctactggtatttttaattaatttcatagtggaatcacaca 49


>Contig-U13873-1 (Contig-U13873-1Q) /CSM_Contig/Contig-U13873-1Q.Seq.d
Length = 1474

Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus


Query: 1 actgttggcctactggtatttttaat 26
||||||||||||||||||||||||||
Sbjct: 2 actgttggcctactggtatttttaat 27


>Contig-U10989-1 (Contig-U10989-1Q) /CSM_Contig/Contig-U10989-1Q.Seq.d
Length = 2550

Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus


Query: 1 actgttggcctactggtatttttaa 25
|||||||||||||||||||||||||
Sbjct: 1 actgttggcctactggtatttttaa 25


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,556
Number of Sequences: 6905
Number of extensions: 16556
Number of successful extensions: 2105
Number of sequences better than 10.0: 570
length of query: 940
length of database: 5,674,871
effective HSP length: 16
effective length of query: 924
effective length of database: 5,564,391
effective search space: 5141497284
effective search space used: 5141497284
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.25
Homology vs DNA
Query= Contig-U11511-1 (Contig-U11511-1Q) /CSM_Contig/Contig-U11511-1Q.Seq.d
(940 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AC116921) Dictyostelium discoideum chromosome 2 map 4624505... 1596 0.0 1
(AU034840) Dictyostelium discoideum slug cDNA, clone SLE569. 1374 0.0 1
(BJ349645) Dictyostelium discoideum cDNA clone:dda37n06, 3' ... 1328 0.0 1
(BJ348714) Dictyostelium discoideum cDNA clone:dda34i04, 3' ... 1269 0.0 1
(BJ404472) Dictyostelium discoideum cDNA clone:dds28k15, 3' ... 1239 0.0 2
(BJ379376) Dictyostelium discoideum cDNA clone:ddc34m17, 3' ... 1090 0.0 1
(BJ356791) Dictyostelium discoideum cDNA clone:dda61o08, 3' ... 858 0.0 1
(AC115607) Dictyostelium discoideum chromosome 2 map 4559693... 100 2e-16 1
(ER804446) PPTI118TR Solanum tuberosum RHPOTKEY BAC ends Sol... 52 0.039 1
(CT215601) Sus scrofa genomic clone PigE-185C2, genomic surv... 52 0.039 1
(BJ338419) Dictyostelium discoideum cDNA clone:dda61o08, 5' ... 38 0.070 2
(CR405706) Zebrafish DNA sequence from clone CH211-233D12 in... 46 0.42 7
(AC123544) Lemur catta clone LB2-246N5, complete sequence. 48 0.60 1
(AC184216) Strongylocentrotus purpuratus clone R3-8G11, WORK... 48 0.60 1
(AL844506) Plasmodium falciparum chromosome 7. 40 0.61 18
(BX000461) Zebrafish DNA sequence from clone DKEY-170E5. 46 0.83 5
(AC123719) Mus musculus chromosome 13, clone RP23-412A14, co... 34 0.97 8
(Z99289) Human DNA sequence from clone RP1-142L7 on chromoso... 38 1.0 4
(CU407321) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 1.1 6
(AB027295) Physarum polycephalum mitochondrial DNA, complete... 36 1.1 6
(AC015771) Homo sapiens, clone RP11-2F20, complete sequence. 36 1.4 6
(AC015772) Homo sapiens chromosome 11 clone RP11-2F21 map 11... 36 1.5 6
(CE110733) tigr-gss-dog-17000324529929 Dog Library Canis lup... 40 1.6 2
(AC153307) Saimiri boliviensis boliviensis clone CH254-347A1... 40 1.8 6
(CJ452674) Macaca fascicularis mRNA, clone: QflA-18340, 5' e... 36 1.9 2
(AL672066) Mouse DNA sequence from clone RP23-311G7 on chrom... 46 2.4 1
(AC231666) Solanum tuberosum chromosome 11 clone RH052D21, c... 46 2.4 1
(AC003105) Arabidopsis thaliana chromosome 2 clone F18A8 map... 46 2.4 1
(AJ529832) Arabidopsis thaliana T-DNA flanking sequence, lef... 46 2.4 1
(DH440818) Macropus eugenii DNA with T3 primer, fosmid clone... 46 2.4 1
(CZ751886) OC__Ba0102C02.f OC__Ba Oryza coarctata genomic cl... 46 2.4 1
(CZ571762) OB__Ba0062G04.r OB__Ba Oryza brachyantha genomic ... 46 2.4 1
(EE661797) LP-N-S01-0141-LF Lymphoid organ library Penaeus m... 46 2.4 1
(EB497348) 1099435212734 12-DrosW-norm-1P5Kb Drosophila will... 46 2.4 1
(EB461249) 1099435288536 12-DrosW-std-1P6Kb Drosophila willi... 46 2.4 1
(DY542437) HPO-N-S01-0050-LF Hematopoietic cDNA library Pena... 46 2.4 1
(BM298657) xj_11919.z1 Penaeus chinensis' cephalothorax cDNA... 46 2.4 1
(FE163030) LV_LO_RA032H20f Litopenaeus vannamei lymphoid org... 46 2.4 1
(FE157318) LV_LO_RA002K07f Litopenaeus vannamei lymphoid org... 46 2.4 1
(FE113776) LV_HC_RA059L09r Litopenaeus vannamei hemocyte cDN... 46 2.4 1
(FE092682) LV_GL_RA45D05f Litopenaeus vannamei gills cDNA li... 46 2.4 1
(FE092681) LV_GL_RA45B05r Litopenaeus vannamei gills cDNA li... 46 2.4 1
(FE089521) LV_GL_RA38L19f Litopenaeus vannamei gills cDNA li... 46 2.4 1
(FE089520) LV_GL_RA38J19r Litopenaeus vannamei gills cDNA li... 46 2.4 1
(FE083032) LV_GL_RA23B21f Litopenaeus vannamei gills cDNA li... 46 2.4 1
(FE083031) LV_GL_RA23N19r Litopenaeus vannamei gills cDNA li... 46 2.4 1
(FE067618) LV_ES_RA46D01f Litopenaeus vannamei eyestalk cDNA... 46 2.4 1
(FE067617) LV_ES_RA46O23r Litopenaeus vannamei eyestalk cDNA... 46 2.4 1
(FE056321) LV_ES_RA24M16f Litopenaeus vannamei eyestalk cDNA... 46 2.4 1
(FE049198) LV_ES_RA11N23f Litopenaeus vannamei eyestalk cDNA... 46 2.4 1
(FE049197) LV_ES_RA11L23r Litopenaeus vannamei eyestalk cDNA... 46 2.4 1
(CJ461275) Macaca fascicularis mRNA, clone: QmoA-14177, 5' e... 34 2.9 3
(AC131221) Rattus norvegicus clone CH230-267B2, *** SEQUENCI... 34 3.0 4
(AE016826) Buchnera aphidicola str. Bp (Baizongia pistaciae)... 34 3.3 13
(AM412317) Clostridium botulinum A str. ATCC 3502 complete g... 34 3.6 2
(CP000726) Clostridium botulinum A str. ATCC 19397, complete... 34 3.6 2
(CP000727) Clostridium botulinum A str. Hall, complete genome. 34 3.7 2
(AC219225) Solanum lycopersicum chromosome 6 clone C06SLm008... 32 3.7 8
(AP004700) Oryza sativa Japonica Group genomic DNA, chromoso... 34 4.2 5
(AC114493) Homo sapiens chromosome 1 clone RP11-336O20, comp... 34 4.5 2
(AC023038) Homo sapiens chromosome 1 clone RP11-690M6 map 1,... 34 4.5 2
(AL356780) Human DNA sequence *** SEQUENCING CANCELLED *** f... 34 4.6 2
(CI033063) Oryza sativa Japonica Group cDNA, clone: 009-M105... 36 4.6 2
(CP000111) Prochlorococcus marinus str. MIT 9312, complete g... 34 4.6 19
(AF003740) Caenorhabditis elegans cosmid C41D11, complete se... 38 5.3 3
(AC209589) Solanum lycopersicum cv. Heinz 1706, chromosome 5... 40 5.4 5
(AB009049) Arabidopsis thaliana genomic DNA, chromosome 5, P... 40 5.6 3
(EH666174) 30H11 Transformed tobacco Lambda Zap II library N... 34 5.8 2
(FG160782) AGN_RNC019xg08f1.ab1 AGN_RNC Nicotiana tabacum cD... 34 6.0 2
(FG143203) AGN_RPC019xi13f1.ab1 AGN_RPC Nicotiana tabacum cD... 34 6.0 2
(EK196318) 1095460039988 Global-Ocean-Sampling_GS-31-01-01-1... 32 6.1 2
(FH138707) CHO_OF3689xm15f1.ab1 CHO_OF3 Nicotiana tabacum ge... 34 6.1 2
(FG149743) AGN_RNC115xb24f1.ab1 AGN_RNC Nicotiana tabacum cD... 34 6.1 2
(FG179652) AGN_PNL201cf1_h10.trimmed.seq AGN_PNL Nicotiana t... 34 6.2 2
(AC229637) Monodelphis domestica clone VMRC18-499F6, WORKING... 42 6.4 6
(DJ209407) Method for identification of useful proteins deri... 38 6.5 2
(AC226677) Monodelphis domestica clone VMRC18-859M3, WORKING... 42 6.6 5
(AP006170) Oryza sativa Japonica Group genomic DNA, chromoso... 40 6.9 4
(EJ225017) 1092351391179 Global-Ocean-Sampling_GS-27-01-01-1... 40 7.0 2
(AC107569) Rattus norvegicus clone CH230-30D10, WORKING DRAF... 34 7.3 5
(AL359238) Human chromosome 14 DNA sequence BAC R-452D21 of ... 34 7.4 7
(AP006407) Lotus japonicus genomic DNA, chromosome 4, clone:... 42 7.4 4
(BJ388905) Dictyostelium discoideum cDNA clone:dds16a20, 5' ... 32 7.8 3
(DU701662) Bst034189 lambda03 Boechera stricta genomic clone... 42 8.7 2
(AE015450) Mycoplasma gallisepticum strain R complete genome. 34 8.9 13
(AC216422) Populus trichocarpa clone POP107-N01, complete se... 32 9.2 6
(CU464084) Zebrafish DNA sequence from clone CH73-360N3 in l... 44 9.4 1
(CU459169) Zebrafish DNA sequence from clone CH73-256H19 in ... 44 9.4 1
(CR932362) Zebrafish DNA sequence from clone DKEYP-92C5 in l... 44 9.4 1
(CR788308) Zebrafish DNA sequence from clone DKEY-192K19 in ... 44 9.4 1
(CR759861) Zebrafish DNA sequence from clone DKEY-193P20 in ... 44 9.4 1
(AL954713) Mouse DNA sequence from clone RP23-463K8 on chrom... 44 9.4 1
(AC167811) Mus musculus BAC clone RP24-286L8 from chromosome... 44 9.4 1
(AC115118) Mus musculus BAC clone RP23-84N24 from 5, complet... 44 9.4 1
(BS000585) Pan troglodytes chromosome Y clone:PTB-582H02. 44 9.4 1
(AC146238) Pan troglodytes BAC clone CH251-170A15 from Y, co... 44 9.4 1
(AP008218) Oryza sativa (japonica cultivar-group) genomic DN... 44 9.4 1
(AP008215) Oryza sativa (japonica cultivar-group) genomic DN... 44 9.4 1
(AP008207) Oryza sativa (japonica cultivar-group) genomic DN... 44 9.4 1
(AP005780) Oryza sativa Japonica Group genomic DNA, chromoso... 44 9.4 1

>(AC116921) Dictyostelium discoideum chromosome 2 map 4624505-4657775
strain AX4, complete sequence.
Length = 33270

Score = 1596 bits (805), Expect = 0.0
Identities = 805/805 (100%)
Strand = Plus / Minus


Query: 136 ctttattaccaattgataatcctgatattccacttttaattctcttatcgattgtaggtt 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30042 ctttattaccaattgataatcctgatattccacttttaattctcttatcgattgtaggtt 29983


Query: 196 ataattataaagaagcaaaatcaaaatatccaaagattgaagaatattatggtagaggtg 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29982 ataattataaagaagcaaaatcaaaatatccaaagattgaagaatattatggtagaggtg 29923


Query: 256 taatctcgattcaaaattttagtgttttcatgtcaccattactcatgaaatattatttac 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29922 taatctcgattcaaaattttagtgttttcatgtcaccattactcatgaaatattatttac 29863


Query: 316 aatatgcagtggattttaataaagattttggtggtcatgttttttctgtagcttttacga 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29862 aatatgcagtggattttaataaagattttggtggtcatgttttttctgtagcttttacga 29803


Query: 376 ttttgaaaagattctctcaagagattttcgtttggaatacattttatcaagagtttttcc 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29802 ttttgaaaagattctctcaagagattttcgtttggaatacattttatcaagagtttttcc 29743


Query: 436 aattgaaattagcagctcacaactttttaaatgatcattaccaacaattctcttcagcag 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29742 aattgaaattagcagctcacaactttttaaatgatcattaccaacaattctcttcagcag 29683


Query: 496 atcaaaagattacactaagatcattcttttatccaaatcaaaagttaaactctgaatttg 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29682 atcaaaagattacactaagatcattcttttatccaaatcaaaagttaaactctgaatttg 29623


Query: 556 aagataagacaaattcaaacaatgatcgttctttggttacagatttcaattataaattcg 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29622 aagataagacaaattcaaacaatgatcgttctttggttacagatttcaattataaattcg 29563


Query: 616 gtattgaatcatattggaagaaatcaatcgagttgtaccatgatccatcgatggttgacg 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29562 gtattgaatcatattggaagaaatcaatcgagttgtaccatgatccatcgatggttgacg 29503


Query: 676 atcaaaatagaaatattggttcttcaactcaaactatttactcaccaccagatttagatt 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29502 atcaaaatagaaatattggttcttcaactcaaactatttactcaccaccagatttagatt 29443


Query: 736 acttttcagttgatgtcgataaaactgttagagattgcttcaatcaaaatacaaaataca 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29442 acttttcagttgatgtcgataaaactgttagagattgcttcaatcaaaatacaaaataca 29383


Query: 796 gagtagataatgatatgcttttatttttcacaagaaaatattcacaatattcaaactctc 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29382 gagtagataatgatatgcttttatttttcacaagaaaatattcacaatattcaaactctc 29323


Query: 856 caaaatttaaaattatcaatccaattgaaagtaattattattctttcttaacttctttta 915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29322 caaaatttaaaattatcaatccaattgaaagtaattattattctttcttaacttctttta 29263


Query: 916 ttgatagtgtagagttataaaataa 940
|||||||||||||||||||||||||
Sbjct: 29262 ttgatagtgtagagttataaaataa 29238

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,378,993,461
Number of extensions: 91503919
Number of successful extensions: 6889240
Number of sequences better than 10.0: 155
Length of query: 940
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 916
Effective length of database: 97,308,875,965
Effective search space: 89134930383940
Effective search space used: 89134930383940
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.30
Homology vs Protein
Query= Contig-U11511-1 (Contig-U11511-1Q) /CSM_Contig/Contig-U11511-1Q.Seq.d
(940 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AM285329_10(AM285329|pid:none) Spiroplasma citri GII3-3X chromos... 40 0.11
AM285328_6(AM285328|pid:none) Spiroplasma citri GII3-3X chromoso... 40 0.11
AE014185_262(AE014185|pid:none) Plasmodium falciparum 3D7 chromo... 39 0.20
AE014187_378(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 38 0.57
AF282242_1(AF282242|pid:none) Plasmodium falciparum strain Dd2 c... 38 0.57
AF282241_1(AF282241|pid:none) Plasmodium falciparum strain K1 ch... 38 0.57
AE014187_461(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 38 0.57
AL844502_15(AL844502|pid:none) Plasmodium falciparum 3D7 chromos... 38 0.57
AG2501(AG2501) hypothetical protein all7191 [imported] - Nostoc ... 38 0.57
CR548612_170(CR548612|pid:none) Paramecium tetraurelia macronucl... 37 0.74
FM992691_385(FM992691|pid:none) Candida dubliniensis CD36 chromo... 37 1.3
CP001302_29(CP001302|pid:none) Borrelia garinii PBr plasmid PBr_... 37 1.3
(Q55C84) RecName: Full=Bromodomain-containing protein DDB_G02701... 36 1.7
AE014186_35(AE014186|pid:none) Plasmodium falciparum 3D7 chromos... 36 2.2
CP001425_2(CP001425|pid:none) Borrelia burgdorferi 64b plasmid 6... 36 2.2
CP001454_35(CP001454|pid:none) Borrelia burgdorferi WI91-23 plas... 36 2.2
CP001314_23(CP001314|pid:none) Borrelia garinii Far04 plasmid Fa... 36 2.2
DQ358081_1(DQ358081|pid:none) Bombyx mori yellow-c mRNA, complet... 35 2.8
CP001404_2088(CP001404|pid:none) Sulfolobus islandicus Y.N.15.51... 35 2.8
CP001399_918(CP001399|pid:none) Sulfolobus islandicus L.S.2.15, ... 35 2.8
S60873(S60873;S72149)phosphorylation-activated transcription fac... 35 2.8
CP001400_554(CP001400|pid:none) Sulfolobus islandicus M.14.25, c... 35 2.8
CP001567_2(CP001567|pid:none) Borrelia burgdorferi Bol26 plasmid... 35 2.8
CP001207_20(CP001207|pid:none) Borrelia burgdorferi ZS7 plasmid ... 35 2.8
CP000563_65(CP000563|pid:none) Shewanella baltica OS155, complet... 35 3.7
FN392319_1334(FN392319|pid:none) Pichia pastoris GS115 chromosom... 35 4.8
AM039952_225(AM039952|pid:none) Xanthomonas campestris pv. vesic... 35 4.8
EU374214_10(EU374214|pid:none) Campylobacter coli strain GB50 he... 35 4.8
EF564347_1(EF564347|pid:none) Xenopus tropicalis interleukin-26 ... 35 4.8
L31845_1(L31845|pid:none) Bacillus subtilis UDP-N-acetylmuramate... 34 6.3
CU468230_1039(CU468230|pid:none) Acinetobacter baumannii str. SD... 34 6.3
(P40778) RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; ... 34 6.3
AL844508_319(AL844508|pid:none) Plasmodium falciparum 3D7 chromo... 34 8.2
AL929359_9(AL929359|pid:none) Plasmodium falciparum strain 3D7, ... 34 8.2
AE014187_226(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 34 8.2
AE014187_704(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 34 8.2
(O32321) RecName: Full=Pesticidal crystal protein cry20Aa; AltNa... 34 8.2

>AM285329_10(AM285329|pid:none) Spiroplasma citri GII3-3X
chromosome, contig ContigNP08.
Length = 467

Score = 40.0 bits (92), Expect = 0.11
Identities = 46/207 (22%), Positives = 83/207 (40%), Gaps = 6/207 (2%)
Frame = +3

Query: 240 YYGRGVISIQNFSVFMSPLLMKYYLQYAVDFNKDFGGHVFS--VAFTILKRFSQEIFVWN 413
+ G+ +I+ + + + + K ++Y FN + ++F +A K F + N
Sbjct: 126 FLGKLIINYETPNKLLDIFIYKNNIKYEFTFNWEIIQYLFMPIIANQSYKHFDMNYLILN 185

Query: 414 TFYQEFFQL----KLAAHNFLNDHYQQFSSADQKITLRSFFYPNQKLNSEFEDKTNSNND 581
Y+E + K ++ F+ND Q F S D + +FY N L F+ ++ +
Sbjct: 186 FNYKELINMDILKKSNSNYFVNDVKQNFYSLDNLFQVLDYFYSN-VLRVIFD--ISNFRE 242

Query: 582 RSLVTDFNYKFGIESYWKKSIELYHDPSMVDDQNRNIGSSTQTIYSPPDLDYFSVDVDKT 761
T N G + K LY SMV + R T Y P + ++ +
Sbjct: 243 YIYFTSDNGNLGFVFFVKNGFLLY-PKSMVFNILR--FPDTDIYYLKPQVQLYNAYTINS 299

Query: 762 VRDCFNQNTKYRVDNDMLLFFTRKYSQ 842
D F+ + + D+L KY+Q
Sbjct: 300 TNDYFSYYSNWDYKTDILPSNNDKYTQ 326

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,178,391,711
Number of extensions: 21709907
Number of successful extensions: 48751
Number of sequences better than 10.0: 37
Number of HSP's gapped: 48673
Number of HSP's successfully gapped: 37
Length of query: 313
Length of database: 1,051,180,864
Length adjustment: 128
Effective length of query: 185
Effective length of database: 636,901,312
Effective search space: 117826742720
Effective search space used: 117826742720
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.98 gvh: 0.46 alm: 0.31 top: 0.47 tms: 0.07 mit: 0.29 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: endoplasmic reticulum
20.0 %: nuclear
16.0 %: cytoplasmic
16.0 %: mitochondrial
8.0 %: plasma membrane
4.0 %: Golgi
4.0 %: vesicles of secretory system
4.0 %: extracellular, including cell wall

>> prediction for Contig-U11511-1 is end

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 3
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 1
SF (FL, S) 0
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0