Contig-U11511-1 |
Contig ID |
Contig-U11511-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
gap included |
Contig length |
930 |
Chromosome number (1..6, M) |
2 |
Chromosome length |
8467578 |
Start point |
1481494 |
End point |
1480587 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
6 |
Number of EST |
7 |
Link to clone list |
U11511 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.25 |
Homology vs DNA |
Query= Contig-U11511-1 (Contig-U11511-1Q) /CSM_Contig/Contig-U11511-1Q.Seq.d (940 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AC116921) Dictyostelium discoideum chromosome 2 map 4624505... 1596 0.0 1 (AU034840) Dictyostelium discoideum slug cDNA, clone SLE569. 1374 0.0 1 (BJ349645) Dictyostelium discoideum cDNA clone:dda37n06, 3' ... 1328 0.0 1 (BJ348714) Dictyostelium discoideum cDNA clone:dda34i04, 3' ... 1269 0.0 1 (BJ404472) Dictyostelium discoideum cDNA clone:dds28k15, 3' ... 1239 0.0 2 (BJ379376) Dictyostelium discoideum cDNA clone:ddc34m17, 3' ... 1090 0.0 1 (BJ356791) Dictyostelium discoideum cDNA clone:dda61o08, 3' ... 858 0.0 1 (AC115607) Dictyostelium discoideum chromosome 2 map 4559693... 100 2e-16 1 (ER804446) PPTI118TR Solanum tuberosum RHPOTKEY BAC ends Sol... 52 0.039 1 (CT215601) Sus scrofa genomic clone PigE-185C2, genomic surv... 52 0.039 1 (BJ338419) Dictyostelium discoideum cDNA clone:dda61o08, 5' ... 38 0.070 2 (CR405706) Zebrafish DNA sequence from clone CH211-233D12 in... 46 0.42 7 (AC123544) Lemur catta clone LB2-246N5, complete sequence. 48 0.60 1 (AC184216) Strongylocentrotus purpuratus clone R3-8G11, WORK... 48 0.60 1 (AL844506) Plasmodium falciparum chromosome 7. 40 0.61 18 (BX000461) Zebrafish DNA sequence from clone DKEY-170E5. 46 0.83 5 (AC123719) Mus musculus chromosome 13, clone RP23-412A14, co... 34 0.97 8 (Z99289) Human DNA sequence from clone RP1-142L7 on chromoso... 38 1.0 4 (CU407321) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 1.1 6 (AB027295) Physarum polycephalum mitochondrial DNA, complete... 36 1.1 6 (AC015771) Homo sapiens, clone RP11-2F20, complete sequence. 36 1.4 6 (AC015772) Homo sapiens chromosome 11 clone RP11-2F21 map 11... 36 1.5 6 (CE110733) tigr-gss-dog-17000324529929 Dog Library Canis lup... 40 1.6 2 (AC153307) Saimiri boliviensis boliviensis clone CH254-347A1... 40 1.8 6 (CJ452674) Macaca fascicularis mRNA, clone: QflA-18340, 5' e... 36 1.9 2 (AL672066) Mouse DNA sequence from clone RP23-311G7 on chrom... 46 2.4 1 (AC231666) Solanum tuberosum chromosome 11 clone RH052D21, c... 46 2.4 1 (AC003105) Arabidopsis thaliana chromosome 2 clone F18A8 map... 46 2.4 1 (AJ529832) Arabidopsis thaliana T-DNA flanking sequence, lef... 46 2.4 1 (DH440818) Macropus eugenii DNA with T3 primer, fosmid clone... 46 2.4 1 (CZ751886) OC__Ba0102C02.f OC__Ba Oryza coarctata genomic cl... 46 2.4 1 (CZ571762) OB__Ba0062G04.r OB__Ba Oryza brachyantha genomic ... 46 2.4 1 (EE661797) LP-N-S01-0141-LF Lymphoid organ library Penaeus m... 46 2.4 1 (EB497348) 1099435212734 12-DrosW-norm-1P5Kb Drosophila will... 46 2.4 1 (EB461249) 1099435288536 12-DrosW-std-1P6Kb Drosophila willi... 46 2.4 1 (DY542437) HPO-N-S01-0050-LF Hematopoietic cDNA library Pena... 46 2.4 1 (BM298657) xj_11919.z1 Penaeus chinensis' cephalothorax cDNA... 46 2.4 1 (FE163030) LV_LO_RA032H20f Litopenaeus vannamei lymphoid org... 46 2.4 1 (FE157318) LV_LO_RA002K07f Litopenaeus vannamei lymphoid org... 46 2.4 1 (FE113776) LV_HC_RA059L09r Litopenaeus vannamei hemocyte cDN... 46 2.4 1 (FE092682) LV_GL_RA45D05f Litopenaeus vannamei gills cDNA li... 46 2.4 1 (FE092681) LV_GL_RA45B05r Litopenaeus vannamei gills cDNA li... 46 2.4 1 (FE089521) LV_GL_RA38L19f Litopenaeus vannamei gills cDNA li... 46 2.4 1 (FE089520) LV_GL_RA38J19r Litopenaeus vannamei gills cDNA li... 46 2.4 1 (FE083032) LV_GL_RA23B21f Litopenaeus vannamei gills cDNA li... 46 2.4 1 (FE083031) LV_GL_RA23N19r Litopenaeus vannamei gills cDNA li... 46 2.4 1 (FE067618) LV_ES_RA46D01f Litopenaeus vannamei eyestalk cDNA... 46 2.4 1 (FE067617) LV_ES_RA46O23r Litopenaeus vannamei eyestalk cDNA... 46 2.4 1 (FE056321) LV_ES_RA24M16f Litopenaeus vannamei eyestalk cDNA... 46 2.4 1 (FE049198) LV_ES_RA11N23f Litopenaeus vannamei eyestalk cDNA... 46 2.4 1 (FE049197) LV_ES_RA11L23r Litopenaeus vannamei eyestalk cDNA... 46 2.4 1 (CJ461275) Macaca fascicularis mRNA, clone: QmoA-14177, 5' e... 34 2.9 3 (AC131221) Rattus norvegicus clone CH230-267B2, *** SEQUENCI... 34 3.0 4 (AE016826) Buchnera aphidicola str. Bp (Baizongia pistaciae)... 34 3.3 13 (AM412317) Clostridium botulinum A str. ATCC 3502 complete g... 34 3.6 2 (CP000726) Clostridium botulinum A str. ATCC 19397, complete... 34 3.6 2 (CP000727) Clostridium botulinum A str. Hall, complete genome. 34 3.7 2 (AC219225) Solanum lycopersicum chromosome 6 clone C06SLm008... 32 3.7 8 (AP004700) Oryza sativa Japonica Group genomic DNA, chromoso... 34 4.2 5 (AC114493) Homo sapiens chromosome 1 clone RP11-336O20, comp... 34 4.5 2 (AC023038) Homo sapiens chromosome 1 clone RP11-690M6 map 1,... 34 4.5 2 (AL356780) Human DNA sequence *** SEQUENCING CANCELLED *** f... 34 4.6 2 (CI033063) Oryza sativa Japonica Group cDNA, clone: 009-M105... 36 4.6 2 (CP000111) Prochlorococcus marinus str. MIT 9312, complete g... 34 4.6 19 (AF003740) Caenorhabditis elegans cosmid C41D11, complete se... 38 5.3 3 (AC209589) Solanum lycopersicum cv. Heinz 1706, chromosome 5... 40 5.4 5 (AB009049) Arabidopsis thaliana genomic DNA, chromosome 5, P... 40 5.6 3 (EH666174) 30H11 Transformed tobacco Lambda Zap II library N... 34 5.8 2 (FG160782) AGN_RNC019xg08f1.ab1 AGN_RNC Nicotiana tabacum cD... 34 6.0 2 (FG143203) AGN_RPC019xi13f1.ab1 AGN_RPC Nicotiana tabacum cD... 34 6.0 2 (EK196318) 1095460039988 Global-Ocean-Sampling_GS-31-01-01-1... 32 6.1 2 (FH138707) CHO_OF3689xm15f1.ab1 CHO_OF3 Nicotiana tabacum ge... 34 6.1 2 (FG149743) AGN_RNC115xb24f1.ab1 AGN_RNC Nicotiana tabacum cD... 34 6.1 2 (FG179652) AGN_PNL201cf1_h10.trimmed.seq AGN_PNL Nicotiana t... 34 6.2 2 (AC229637) Monodelphis domestica clone VMRC18-499F6, WORKING... 42 6.4 6 (DJ209407) Method for identification of useful proteins deri... 38 6.5 2 (AC226677) Monodelphis domestica clone VMRC18-859M3, WORKING... 42 6.6 5 (AP006170) Oryza sativa Japonica Group genomic DNA, chromoso... 40 6.9 4 (EJ225017) 1092351391179 Global-Ocean-Sampling_GS-27-01-01-1... 40 7.0 2 (AC107569) Rattus norvegicus clone CH230-30D10, WORKING DRAF... 34 7.3 5 (AL359238) Human chromosome 14 DNA sequence BAC R-452D21 of ... 34 7.4 7 (AP006407) Lotus japonicus genomic DNA, chromosome 4, clone:... 42 7.4 4 (BJ388905) Dictyostelium discoideum cDNA clone:dds16a20, 5' ... 32 7.8 3 (DU701662) Bst034189 lambda03 Boechera stricta genomic clone... 42 8.7 2 (AE015450) Mycoplasma gallisepticum strain R complete genome. 34 8.9 13 (AC216422) Populus trichocarpa clone POP107-N01, complete se... 32 9.2 6 (CU464084) Zebrafish DNA sequence from clone CH73-360N3 in l... 44 9.4 1 (CU459169) Zebrafish DNA sequence from clone CH73-256H19 in ... 44 9.4 1 (CR932362) Zebrafish DNA sequence from clone DKEYP-92C5 in l... 44 9.4 1 (CR788308) Zebrafish DNA sequence from clone DKEY-192K19 in ... 44 9.4 1 (CR759861) Zebrafish DNA sequence from clone DKEY-193P20 in ... 44 9.4 1 (AL954713) Mouse DNA sequence from clone RP23-463K8 on chrom... 44 9.4 1 (AC167811) Mus musculus BAC clone RP24-286L8 from chromosome... 44 9.4 1 (AC115118) Mus musculus BAC clone RP23-84N24 from 5, complet... 44 9.4 1 (BS000585) Pan troglodytes chromosome Y clone:PTB-582H02. 44 9.4 1 (AC146238) Pan troglodytes BAC clone CH251-170A15 from Y, co... 44 9.4 1 (AP008218) Oryza sativa (japonica cultivar-group) genomic DN... 44 9.4 1 (AP008215) Oryza sativa (japonica cultivar-group) genomic DN... 44 9.4 1 (AP008207) Oryza sativa (japonica cultivar-group) genomic DN... 44 9.4 1 (AP005780) Oryza sativa Japonica Group genomic DNA, chromoso... 44 9.4 1
>(AC116921) Dictyostelium discoideum chromosome 2 map 4624505-4657775 strain AX4, complete sequence. Length = 33270
Score = 1596 bits (805), Expect = 0.0 Identities = 805/805 (100%) Strand = Plus / Minus
Query: 136 ctttattaccaattgataatcctgatattccacttttaattctcttatcgattgtaggtt 195 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 30042 ctttattaccaattgataatcctgatattccacttttaattctcttatcgattgtaggtt 29983
Query: 196 ataattataaagaagcaaaatcaaaatatccaaagattgaagaatattatggtagaggtg 255 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 29982 ataattataaagaagcaaaatcaaaatatccaaagattgaagaatattatggtagaggtg 29923
Query: 256 taatctcgattcaaaattttagtgttttcatgtcaccattactcatgaaatattatttac 315 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 29922 taatctcgattcaaaattttagtgttttcatgtcaccattactcatgaaatattatttac 29863
Query: 316 aatatgcagtggattttaataaagattttggtggtcatgttttttctgtagcttttacga 375 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 29862 aatatgcagtggattttaataaagattttggtggtcatgttttttctgtagcttttacga 29803
Query: 376 ttttgaaaagattctctcaagagattttcgtttggaatacattttatcaagagtttttcc 435 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 29802 ttttgaaaagattctctcaagagattttcgtttggaatacattttatcaagagtttttcc 29743
Query: 436 aattgaaattagcagctcacaactttttaaatgatcattaccaacaattctcttcagcag 495 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 29742 aattgaaattagcagctcacaactttttaaatgatcattaccaacaattctcttcagcag 29683
Query: 496 atcaaaagattacactaagatcattcttttatccaaatcaaaagttaaactctgaatttg 555 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 29682 atcaaaagattacactaagatcattcttttatccaaatcaaaagttaaactctgaatttg 29623
Query: 556 aagataagacaaattcaaacaatgatcgttctttggttacagatttcaattataaattcg 615 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 29622 aagataagacaaattcaaacaatgatcgttctttggttacagatttcaattataaattcg 29563
Query: 616 gtattgaatcatattggaagaaatcaatcgagttgtaccatgatccatcgatggttgacg 675 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 29562 gtattgaatcatattggaagaaatcaatcgagttgtaccatgatccatcgatggttgacg 29503
Query: 676 atcaaaatagaaatattggttcttcaactcaaactatttactcaccaccagatttagatt 735 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 29502 atcaaaatagaaatattggttcttcaactcaaactatttactcaccaccagatttagatt 29443
Query: 736 acttttcagttgatgtcgataaaactgttagagattgcttcaatcaaaatacaaaataca 795 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 29442 acttttcagttgatgtcgataaaactgttagagattgcttcaatcaaaatacaaaataca 29383
Query: 796 gagtagataatgatatgcttttatttttcacaagaaaatattcacaatattcaaactctc 855 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 29382 gagtagataatgatatgcttttatttttcacaagaaaatattcacaatattcaaactctc 29323
Query: 856 caaaatttaaaattatcaatccaattgaaagtaattattattctttcttaacttctttta 915 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 29322 caaaatttaaaattatcaatccaattgaaagtaattattattctttcttaacttctttta 29263
Query: 916 ttgatagtgtagagttataaaataa 940 ||||||||||||||||||||||||| Sbjct: 29262 ttgatagtgtagagttataaaataa 29238
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 1,378,993,461 Number of extensions: 91503919 Number of successful extensions: 6889240 Number of sequences better than 10.0: 155 Length of query: 940 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 916 Effective length of database: 97,308,875,965 Effective search space: 89134930383940 Effective search space used: 89134930383940 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 6.30 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
3 |
AF (FL, S) |
0 |
SL (DIR, L) |
1 |
SS (DIR, S) |
0 |
SH (FL, L) |
1 |
SF (FL, S) |
0 |
CH (FL, L) |
1 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |