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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U01777-1
Contig ID Contig-U01777-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U01777-1 (Contig-U01777-1Q) /CSM_Contig/Contig-U01777-1Q.Seq.d
ATTCGTTGTTATTATAATAGGGATGGTGAAATTGGTGATATAATGCTATT
TGATTCTGGGCTACCAATGTTTTCAACATCATTTGGAAACGTCATACAAA
TGTTAATTGCCAATAATACAATGAGCAAGTTGGGTTTATCAACAGCCTGT
TTCTTTGATAGATACGGATACGGTTGGTCAGAGATTAGTCCAAAGCCTGT
GTTGGCACAGGATTTCGCAAGAAAGTTAAGAGGTTCCATCCAAATGATAC
CAGAGTTGGCCAATAGAAAATTCTTTTATTGCGGTTGGAGTTATGGAGGA
TTGAAT----------GTTTACCACAAAGTTGTATAGATAAATCACAAGC
AGTATACTATAACCCAAATCAAAATTATCTAAATACAATATATCAAGAAT
TGTCGAATATGATTCCAAATGCAAATGCTTTGAATAAATTGTACAAAAAA
GCCCCAAATCCTTCAAAGCCATTAGGAAACTTACCAATGGTAGTTATGTC
CTCTGATCCAGATGATGAACCATCTTGGTTTGAAAGACAAATTAAATTAT
CTGAATTATCTTCAAACTCTATTCAATTAAATTGTCAAAATCATTTCGTA
CCATTTTATCAACCAAAATTAGTTATAAATGCAATTGAAGTTTTAAGTGC
TAAATCAAAATAAATTTAATTTTTTCCCAACTTTTTTAAAATTATTATAA
TAATAAAATAATAACTTTAAAAATAATAATAATAATAATTTTAATAATAT
TAAAAAAAATTTTAATAATAATACCCTTAATAATAATAATAATAATAATA
ATTAACTTTTTTTTTTTTTTATTTCGAATTTTAAAAAAAAAAAAAGGGAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGA
Gap gap included
Contig length 883
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 6534234
End point 6535118
Strand (PLUS/MINUS) PLUS
Number of clones 3
Number of EST 4
Link to clone list U01777
List of clone(s) 

est1=SSH202F,1,307
est2=SSH877F,308,654
est3=SSA689F,346,724
est4=SSH202Z,476,885
Translated Amino Acid sequence 
IRCYYNRDGEIGDIMLFDSGLPMFSTSFGNVIQMLIANNTMSKLGLSTACFFDRYGYGWS
EISPKPVLAQDFARKLRGSIQMIPELANRKFFYCGWSYGGLN---

---LPQSCIDKSQAVYYNPNQNYLNTIYQELSNMIPNANALNKLYKKAPNPSKPLGNLPM
VVMSSDPDDEPSWFERQIKLSELSSNSIQLNCQNHFVPFYQPKLVINAIEVLSAKSK*i*
ffpnffkiiiiik**l*k*****f**y*kkf***yp********ltffffyfef*kkkkg
kkkkkkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
IRCYYNRDGEIGDIMLFDSGLPMFSTSFGNVIQMLIANNTMSKLGLSTACFFDRYGYGWS
EISPKPVLAQDFARKLRGSIQMIPELANRKFFYCGWSYGGLN---

---vyhkvv*inhkqytitqikii*iqyikncri*fqmqml*inctkkpqilqsh*etyq
w*lcpliqmmnhlglkdklnylnylqtlfn*ivkiisyhfinqn*l*mqlkf*vlnqnkf
nffptflkll***nnnfknnnnnnfnnikknfnnntlnnnnnnnn*lffffisnfkkkkr
ekkkkkkkkkkkkkk

Frame B:
fvviiigmvklvi*cylilgyqcfqhhletsykc*lpiiq*aswvyqqpvslidtdtvgq
rlvqslcwhrisqes*evpsk*yqswpiensfiavgvmed*---

---fttklyr*itssil*pksklskynisriveydskckcfe*ivqkspksfkairkltn
gsyvl*sr**tilv*ktn*ii*iifklysiklsksfrtilstkisykcn*sfkc*ikinl
ifsqlf*nyynnkiitlkiiiiiiliilkkiliiipliiiiiiiinfffflfrilkkkkg
kkkkkkkkkkkkkkr

Frame C:
slll**gw*nw*ynai*fwatnvfniiwkrhtnvncq*yneqvgfinslfl**irirlvr
d*skacvgtgfrkkvkrfhpndtrvgq*killlrlelwrie---

---LPQSCIDKSQAVYYNPNQNYLNTIYQELSNMIPNANALNKLYKKAPNPSKPLGNLPM
VVMSSDPDDEPSWFERQIKLSELSSNSIQLNCQNHFVPFYQPKLVINAIEVLSAKSK*i*
ffpnffkiiiiik**l*k*****f**y*kkf***yp********ltffffyfef*kkkkg
kkkkkkkkkkkkkk
own update 2004. 6. 7
Homology vs CSM-cDNA 
Query= Contig-U01777-1 (Contig-U01777-1Q)
/CSM_Contig/Contig-U01777-1Q.Seq.d
         (893 letters)

Database: CSM
           8361 sequences; 7,895,291 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U01777-1 (Contig-U01777-1Q) /CSM_Contig/Conti...  1209  0.0
Contig-U13222-1 (Contig-U13222-1Q) /CSM_Contig/Conti...    36  0.088
Contig-U10122-1 (Contig-U10122-1Q) /CSM_Contig/Conti...    36  0.088
Contig-U05300-1 (Contig-U05300-1Q) /CSM_Contig/Conti...    36  0.088
Contig-U04419-1 (Contig-U04419-1Q) /CSM_Contig/Conti...    36  0.088
Contig-U14824-1 (Contig-U14824-1Q) /CSM_Contig/Conti...    34  0.35
Contig-U13940-1 (Contig-U13940-1Q) /CSM_Contig/Conti...    34  0.35
Contig-U12472-1 (Contig-U12472-1Q) /CSM_Contig/Conti...    34  0.35
Contig-U12186-1 (Contig-U12186-1Q) /CSM_Contig/Conti...    34  0.35
Contig-U11335-1 (Contig-U11335-1Q) /CSM_Contig/Conti...    34  0.35

>Contig-U01777-1 (Contig-U01777-1Q) /CSM_Contig/Contig-U01777-1Q.Seq.d
          Length = 893

 Score = 1209 bits (610), Expect = 0.0
 Identities = 640/640 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcgttgttattataatagggatggtgaaattggtgatataatgctatttgattctggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   attcgttgttattataatagggatggtgaaattggtgatataatgctatttgattctggg 60

                                                                       
Query: 61  ctaccaatgttttcaacatcatttggaaacgtcatacaaatgttaattgccaataataca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ctaccaatgttttcaacatcatttggaaacgtcatacaaatgttaattgccaataataca 120

                                                                       
Query: 121 atgagcaagttgggtttatcaacagcctgtttctttgatagatacggatacggttggtca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atgagcaagttgggtttatcaacagcctgtttctttgatagatacggatacggttggtca 180

                                                                       
Query: 181 gagattagtccaaagcctgtgttggcacaggatttcgcaagaaagttaagaggttccatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gagattagtccaaagcctgtgttggcacaggatttcgcaagaaagttaagaggttccatc 240

                                                                       
Query: 241 caaatgataccagagttggccaatagaaaattcttttattgcggttggagttatggagga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 caaatgataccagagttggccaatagaaaattcttttattgcggttggagttatggagga 300

                                                                       
Query: 301 ttgaatnnnnnnnnnngtttaccacaaagttgtatagataaatcacaagcagtatactat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttgaatnnnnnnnnnngtttaccacaaagttgtatagataaatcacaagcagtatactat 360

                                                                       
Query: 361 aacccaaatcaaaattatctaaatacaatatatcaagaattgtcgaatatgattccaaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aacccaaatcaaaattatctaaatacaatatatcaagaattgtcgaatatgattccaaat 420

                                                                       
Query: 421 gcaaatgctttgaataaattgtacaaaaaagccccaaatccttcaaagccattaggaaac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gcaaatgctttgaataaattgtacaaaaaagccccaaatccttcaaagccattaggaaac 480

                                                                       
Query: 481 ttaccaatggtagttatgtcctctgatccagatgatgaaccatcttggtttgaaagacaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttaccaatggtagttatgtcctctgatccagatgatgaaccatcttggtttgaaagacaa 540

                                                                       
Query: 541 attaaattatctgaattatcttcaaactctattcaattaaattgtcaaaatcatttcgta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 attaaattatctgaattatcttcaaactctattcaattaaattgtcaaaatcatttcgta 600

                                                   
Query: 601 ccattttatcaaccaaaattagttataaatgcaattgaag 640
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ccattttatcaaccaaaattagttataaatgcaattgaag 640


>Contig-U13222-1 (Contig-U13222-1Q) /CSM_Contig/Contig-U13222-1Q.Seq.d
          Length = 640

 Score = 36.2 bits (18), Expect = 0.088
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 502 tctgatccagatgatgaa 519
           ||||||||||||||||||
Sbjct: 534 tctgatccagatgatgaa 551


>Contig-U10122-1 (Contig-U10122-1Q) /CSM_Contig/Contig-U10122-1Q.Seq.d
          Length = 1154

 Score = 36.2 bits (18), Expect = 0.088
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 371 aaaattatctaaatacaatata 392
           |||| |||||||||||||||||
Sbjct: 118 aaaaatatctaaatacaatata 139


  Database: CSM
    Posted date:  Jun 7, 2004  8:33 AM
  Number of letters in database: 7,895,291
  Number of sequences in database:  8361
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,261
Number of Sequences: 8361
Number of extensions: 10261
Number of successful extensions: 1015
Number of sequences better than 10.0: 114
length of query: 893
length of database: 7,895,291
effective HSP length: 16
effective length of query: 877
effective length of database: 7,761,515
effective search space: 6806848655
effective search space used: 6806848655
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 5. 7
Homology vs DNA 
Query= Contig-U01777-1 (Contig-U01777-1Q) /CSM_Contig/Contig-U01777-1Q.Seq.d
         (893 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC116924) Dictyostelium discoideum chromosome 2 map 6357117...   640   0.0    2
(AU076385) Dictyostelium discoideum slug cDNA, clone SSA689.      543   e-150  1
(AU073439) Dictyostelium discoideum slug cDNA, clone SSH202.      476   e-130  1
(AU073697) Dictyostelium discoideum slug cDNA, clone SSH877.      474   e-129  1
(AU038048) Dictyostelium discoideum slug cDNA, clone SSH202.      262   2e-65  1
(ER323573) 1092344193379 Global-Ocean-Sampling_GS-34-01-01-1...    42   0.036  2
(EK343137) 1095467084843 Global-Ocean-Sampling_GS-31-01-01-1...    50   0.15   1
(EJ771214) 1092966610112 Global-Ocean-Sampling_GS-30-02-01-1...    50   0.15   1
(EJ756589) 1092963087303 Global-Ocean-Sampling_GS-30-02-01-1...    50   0.15   1
(EJ354043) 1092963618837 Global-Ocean-Sampling_GS-28-01-01-1...    50   0.15   1
(EJ172264) 1092344087524 Global-Ocean-Sampling_GS-27-01-01-1...    50   0.15   1
(FB609482) Sequence 25205 from Patent WO2004081186.                48   0.58   1
(FB596528) Sequence 12251 from Patent WO2004081186.                48   0.58   1
(EA115451) Sequence 88 from patent US 7205106.                     48   0.58   1
(DD047193) DETECTION OF SUSCEPTIBILITY TO AUTOIMMUNE DISEASES.     48   0.58   1
(CS789265) Sequence 521 from Patent WO2005031001.                  48   0.58   1
(CQ796115) Sequence 88 from Patent EP1405921.                      48   0.58   1
(GN008571) Sequence 1012 from Patent EP2014669.                    48   0.58   1
(AR611324) Sequence 39 from patent US 6825336.                     48   0.58   1
(AR611312) Sequence 27 from patent US 6825336.                     48   0.58   1
(AC106739) Homo sapiens chromosome 16 clone CTD-3203P2, comp...    48   0.58   1
(AC004525) Homo sapiens Chromosome 16 BAC clone CIT987SK-582...    48   0.58   1
(AE013218) Buchnera aphidicola str. Sg (Schizaphis graminum)...    38   1.2    9
(EJ382203) 1092963766731 Global-Ocean-Sampling_GS-28-01-01-1...    42   1.8    2
(EJ929001) 1093018795574 Global-Ocean-Sampling_GS-30-02-01-1...    42   1.8    2
(BX908795) Zebrafish DNA sequence from clone DKEY-92J12 in l...    46   2.3    1
(AL929074) Zebrafish DNA sequence from clone CH211-101B14.         46   2.3    1
(EK442074) 1092215019554 Global-Ocean-Sampling_GS-32-01-01-1...    46   2.3    1
(EK441631) 1092214954727 Global-Ocean-Sampling_GS-32-01-01-1...    46   2.3    1
(EK193607) 1095460029154 Global-Ocean-Sampling_GS-31-01-01-1...    46   2.3    1
(EJ698349) 1092956026167 Global-Ocean-Sampling_GS-30-02-01-1...    46   2.3    1
(EJ655234) 1092955003794 Global-Ocean-Sampling_GS-30-02-01-1...    46   2.3    1
(EJ103086) 1091141615631 Global-Ocean-Sampling_GS-27-01-01-1...    46   2.3    1
(EJ025129) 1095454017235 Global-Ocean-Sampling_GS-26-01-01-1...    46   2.3    1
(DU182374) 1098553680236 CHORI-243 Ovis aries genomic clone ...    46   2.3    1
(DR769460) ILLUMIGEN_MCQ_63091 Katze_MMTE Macaca mulatta cDN...    46   2.3    1
(AC178584) Strongylocentrotus purpuratus clone R3-3023A3, WO...    38   4.2    5
(EJ389851) 1092963904410 Global-Ocean-Sampling_GS-28-01-01-1...    38   6.5    2
(ER373134) 1093025197430 Global-Ocean-Sampling_GS-34-01-01-1...    38   6.7    2
(CR361554) Zebrafish DNA sequence from clone CH211-222L15 in...    36   8.9    4
(AC160633) Mus musculus chromosome 8, clone RP23-407P24, com...    44   9.1    1
(AC116892) Mus musculus chromosome 8, clone RP24-529J16, com...    44   9.1    1
(AF165818) Guillardia theta nucleomorph chromosome 1, comple...    44   9.1    1
(CQ604238) Sequence 31996 from Patent WO0171042.                   44   9.1    1
(CQ604235) Sequence 31993 from Patent WO0171042.                   44   9.1    1
(AE014297) Drosophila melanogaster chromosome 3R, complete s...    44   9.1    1
(AC008206) Drosophila melanogaster, chromosome 3R, region 96...    44   9.1    1
(AC007853) Drosophila melanogaster, chromosome 3R, region 96...    44   9.1    1
(AC150450) Callithrix jacchus clone CH259-124G15, WORKING DR...    44   9.1    1
(AC115384) Rattus norvegicus clone CH230-83H13, WORKING DRAF...    44   9.1    1
(AC174816) Bos taurus clone CH240-373N3, WORKING DRAFT SEQUE...    44   9.1    1
(AC013932) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    44   9.1    1
(AZ454843) 1M0256P23R Mouse 10kb plasmid UUGC1M library Mus ...    44   9.1    1
(FI193750) CccaBa014-J13TR CccABa Cajanus cajan genomic clon...    44   9.1    1
(ER484768) 1093015291860 Global-Ocean-Sampling_GS-35-01-01-1...    44   9.1    1
(ER393141) 1095337030645 Global-Ocean-Sampling_GS-34-01-01-1...    44   9.1    1
(EK113941) 1092963161565 Global-Ocean-Sampling_GS-31-01-01-1...    44   9.1    1
(EJ255851) 1095349009576 Global-Ocean-Sampling_GS-27-01-01-1...    44   9.1    1
(CC581133) CH240_376K13.T7 CHORI-240 Bos taurus genomic clon...    44   9.1    1
(DT782812) 127387368 TH1 Tribolium castaneum cDNA clone 128E...    44   9.1    1
(DK412590) Drosophila simulans mRNA, third instar larvae ful...    44   9.1    1
(DK339706) Drosophila sechellia mRNA, adult full-length cDNA...    44   9.1    1
(CO298226) EK172552.5prime Exelixis FlyTag CK01 pCDNA-SK+ Dr...    44   9.1    1

>(AC116924) Dictyostelium discoideum chromosome 2 map 6357117-6445670
             strain AX4, complete sequence.
          Length = 88549

 Score =  640 bits (323), Expect(2) = 0.0
 Identities = 323/323 (100%)
 Strand = Plus / Minus


Query: 318   tttaccacaaagttgtatagataaatcacaagcagtatactataacccaaatcaaaatta 377
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84566 tttaccacaaagttgtatagataaatcacaagcagtatactataacccaaatcaaaatta 84507


Query: 378   tctaaatacaatatatcaagaattgtcgaatatgattccaaatgcaaatgctttgaataa 437
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84506 tctaaatacaatatatcaagaattgtcgaatatgattccaaatgcaaatgctttgaataa 84447


Query: 438   attgtacaaaaaagccccaaatccttcaaagccattaggaaacttaccaatggtagttat 497
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84446 attgtacaaaaaagccccaaatccttcaaagccattaggaaacttaccaatggtagttat 84387


Query: 498   gtcctctgatccagatgatgaaccatcttggtttgaaagacaaattaaattatctgaatt 557
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84386 gtcctctgatccagatgatgaaccatcttggtttgaaagacaaattaaattatctgaatt 84327


Query: 558   atcttcaaactctattcaattaaattgtcaaaatcatttcgtaccattttatcaaccaaa 617
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84326 atcttcaaactctattcaattaaattgtcaaaatcatttcgtaccattttatcaaccaaa 84267


Query: 618   attagttataaatgcaattgaag 640
             |||||||||||||||||||||||
Sbjct: 84266 attagttataaatgcaattgaag 84244

 Score =  607 bits (306), Expect(2) = 0.0
 Identities = 306/306 (100%)
 Strand = Plus / Minus


Query: 1     attcgttgttattataatagggatggtgaaattggtgatataatgctatttgattctggg 60
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85090 attcgttgttattataatagggatggtgaaattggtgatataatgctatttgattctggg 85031


Query: 61    ctaccaatgttttcaacatcatttggaaacgtcatacaaatgttaattgccaataataca 120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85030 ctaccaatgttttcaacatcatttggaaacgtcatacaaatgttaattgccaataataca 84971


Query: 121   atgagcaagttgggtttatcaacagcctgtttctttgatagatacggatacggttggtca 180
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84970 atgagcaagttgggtttatcaacagcctgtttctttgatagatacggatacggttggtca 84911


Query: 181   gagattagtccaaagcctgtgttggcacaggatttcgcaagaaagttaagaggttccatc 240
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84910 gagattagtccaaagcctgtgttggcacaggatttcgcaagaaagttaagaggttccatc 84851


Query: 241   caaatgataccagagttggccaatagaaaattcttttattgcggttggagttatggagga 300
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84850 caaatgataccagagttggccaatagaaaattcttttattgcggttggagttatggagga 84791


Query: 301   ttgaat 306
             ||||||
Sbjct: 84790 ttgaat 84785

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 765,223,040
Number of extensions: 43904598
Number of successful extensions: 3378564
Number of sequences better than 10.0: 63
Length of query: 893
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 869
Effective length of database: 99,340,224,878
Effective search space: 86326655418982
Effective search space used: 86326655418982
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.18
Homology vs Protein 
Query= Contig-U01777-1 (Contig-U01777-1Q) /CSM_Contig/Contig-U01777-1Q.Seq.d
         (893 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116924_27(AC116924|pid:none) Dictyostelium discoideum chromoso...   337   2e-91
CP000473_5228(CP000473|pid:none) Solibacter usitatus Ellin6076, ...    45   0.004
CP001291_597(CP001291|pid:none) Cyanothece sp. PCC 7424, complet...    38   0.40
AM778943_99(AM778943|pid:none) Microcystis aeruginosa PCC 7806 g...    36   1.5
AP009552_4836(AP009552|pid:none) Microcystis aeruginosa NIES-843...    35   3.4
AM181176_170(AM181176|pid:none) Pseudomonas fluorescens SBW25 co...    35   3.4
BC045899_1(BC045899|pid:none) Danio rerio hypothetical protein L...    35   4.4
AK297518_1(AK297518|pid:none) Homo sapiens cDNA FLJ58913 complet...    35   4.4
CP000494_4996(CP000494|pid:none) Bradyrhizobium sp. BTAi1, compl...    34   5.8
CP000875_1040(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ...    34   5.8
FM178380_91(FM178380|pid:none) Aliivibrio salmonicida LFI1238 ch...    34   5.8
CP000874_2093(CP000874|pid:none) Rhizobium sp. NGR234 plasmid pN...    34   5.8
CP000822_711(CP000822|pid:none) Citrobacter koseri ATCC BAA-895,...    34   5.8
CP001101_1438(CP001101|pid:none) Chlorobium phaeobacteroides BS1...    34   7.5
CP001138_2082(CP001138|pid:none) Salmonella enterica subsp. ente...    33   9.9
CP000463_1641(CP000463|pid:none) Rhodopseudomonas palustris BisA...    33   9.9
AM920428_15(AM920428|pid:none) Penicillium chrysogenum Wisconsin...    33   9.9
CP001344_247(CP001344|pid:none) Cyanothece sp. PCC 7425, complet...    33   9.9

>AC116924_27(AC116924|pid:none) Dictyostelium discoideum chromosome
           2 map 6357117-6445670 strain AX4, complete sequence.
          Length = 351

 Score =  337 bits (865), Expect = 2e-91
 Identities = 190/286 (66%), Positives = 195/286 (68%), Gaps = 69/286 (24%)
 Frame = +1

Query: 1   IRCYYNRDGEIGDIMLFDSGLPMFSTSFGNVIQMLIANNTMSKLGLSTACFFDRYGYGWS 180
           IRCYYNRDGEIGDIMLFDSGLPMFSTSFGNVIQMLIANNTMSKLGLSTACFFDRYGYGWS
Sbjct: 63  IRCYYNRDGEIGDIMLFDSGLPMFSTSFGNVIQMLIANNTMSKLGLSTACFFDRYGYGWS 122

Query: 181 EISPKPVLAQDFARKLRGSIQMIPELANRKFFYCGWSYGGLN---XXXXLPQS-----CI 336
           EISPKPVLAQDFARKLRGSIQMIPELANRKFFYCGWSYGGLN        P        I
Sbjct: 123 EISPKPVLAQDFARKLRGSIQMIPELANRKFFYCGWSYGGLNAQTYAMLYPNDVKGILTI 182

Query: 337 DKSQAVYYN--------------------PNQNY--------LNTIYQELSNMI------ 414
           D +     N                    PN+ +        L+  Y  +SN I
Sbjct: 183 DGTDIGVINDQKWLMIPRFLDMINYFKRLPNEEFKQFCRNGSLSIDYGWISNAISLPQSC 242

Query: 415 ----------PNANALN-----------------KLYKKAPNPSKPLGNLPMVVMSSDPD 513
                     PN N LN                 KLYKKAPNPSKPLGNLPMVVMSSDPD
Sbjct: 243 IDKSQAVYYNPNQNYLNTIYQELSNMIPNANALNKLYKKAPNPSKPLGNLPMVVMSSDPD 302

Query: 514 DEPSWFERQIKLSELSSNSIQLNCQNHFVPFYQPKLVINAIEVLSA 651
           DEPSWFERQIKLSELSSNSIQLNCQNHFVPFYQPKLVINAIEVLSA
Sbjct: 303 DEPSWFERQIKLSELSSNSIQLNCQNHFVPFYQPKLVINAIEVLSA 348

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,185,002,544
Number of extensions: 23693775
Number of successful extensions: 65806
Number of sequences better than 10.0: 18
Number of HSP's gapped: 65779
Number of HSP's successfully gapped: 19
Length of query: 297
Length of database: 1,051,180,864
Length adjustment: 128
Effective length of query: 169
Effective length of database: 636,901,312
Effective search space: 107636321728
Effective search space used: 107636321728
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.74  gvh: 0.53  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 28.0 %: nuclear
	 24.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U01777-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 3
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0