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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U11461-1
Contig ID Contig-U11461-1
Contig update 2002.12.18
Contig sequence 
>Contig-U11461-1 (Contig-U11461-1Q) /CSM_Contig/Contig-U11461-1Q.Seq.d
AAGATTCAAAAGTTTGTTAAAGAGACACCAAATTCAATAATAACATTATT
AGTATTTCAAAATTTGAAAACCATAGATGCAGGAGCAAGAACATTATCAG
CAATTACATTCAAAAATTTAGTTAAAGATAGTTGGGTAGATGGCGATGAA
GTTGAGAATCCAATTCCATCAAATGACAAAGAGATGGTGAAAAGTTTATT
ATTAAATTTCATTCTATCAGCAGTAAACAACACCACACAATCACAATTGG
TCGAATCATTATCAATGATTGGTGTATCTGATTTCCCACAACAATGGCCT
TCAATCTTACCAGAATTAATCAAACAAATGGAATCAAACACTGACATTCC
AACACTTTCAATCATCTTGAGAGTTTTACATTCACTCTTAAAAAAATATA
GAGGTCAAGAGAGAAATAATCAATCATTATCTGAATTAAAATATATTTTA
TCAATTTTACCAACTCCATATTTATCATTATTAATTAAAACAGGTGTTGC
AGTTGATGCAAATTTACAAAATGAACAACAATTAGTTTTATTATTAAATT
GTGTCCATTTCCTTTTAGAAATCTTTTTCTCAATGAGTTCAGTTGATTTA
CCAGAATTTTTCGAAGATAATCTCGCTTCTTTTACAAATGAATTCCATAG
ATACCTTAAATTTAATACAAATTTTCAATCAATCATTCTTTCAAGTAATG
ATGAAGAACCATCTTTATTGAAAAAGATTCAAACTTCAATTTGTGAAATT
ATTAATCTTTATACTCAAATTTATGATGAGGAGTTTTCATCATTCCTTCA
ACCATTCGTACAAGTTGTTTGGGGACTTTTAACTCAAACTTCAAAAGATA
TTTGTAATGATCCATTTGTTTATGCATCAATTAGATTTTTAGGTACAGTA
GCAACATCAATTTCACATAAAATCTTTGAAAGTCCAGAAACATTAAAACA
AATTTGTTCAATGATTGTTACACCAAATATTGAATTAAGAGAATCTGATA
TTGAATTATATGAAGATAATCATGTTGAATATATGCGTAGAGA-------
---AATCATTTTCAATGATATGACTTGGGCTCGTGATGCCGATTATCCAG
CATTGGTACGTTTGCTTCAAGCTTTCATTAAAAAGGAAGGTTCATCGATC
GCTCCACATCTTAGTGCCATCTTGGGTATCACTGAGAAACTCATTATGAG
AGTCACTCATGATCACGAAGCTTTCCTCATTTTAGAGACTGTTGTTGAAA
CTTTGGATATTCAATTCTTGGAGAAATACTTGGGTGGTATCTTCTCTATG
ATTCTCACTAGAATCACCAAAAAGAAGACCCTCAAAGTCGTACGTTGTTT
CACTATCTTCTTTTCAATCTTTATGATCAAATATGGTGTTGTCAAGACTG
CCCAAACCGTTAGAGCCATCAAAGATTCACTTTGGGAAGACATTTTAATT
AAACTTTGGTTACCAACAGTCGAAGATATCAATGGCTCAATTGAAAAGAA
AATCATTTCAATCTCTTTAACCAATATGATCTGTTGTAATGATATTTTAG
CCACACCAGAACTTTGGATTAAACTAATTCAATGTCAATCAAATGTTATT
AGTGGTAAGAAATCTCAAGAGACTGAACAAGCCGGTGCTGCTTCTGATCT
CTACATTGATCAAGCTGAAGCTAATGAAGGTTATGTTCCAACTTTTACTC
AACTTCAATTCTCAAAGAAAGTTGACGTTGATCCTTTCCCAACAATTTCA
AATCCAAAAGAATATTTTATCTCTACTTTCCAAACATTTAAATCTCAAAA
NAAATGTAGTACTCCATTACTTTCAA
Gap gap included
Contig length 1816
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 806151
End point 804362
Strand (PLUS/MINUS) MINUS
Number of clones 5
Number of EST 7
Link to clone list U11461
List of clone(s) 

est1=AHL745F,1,632
est2=VHP655F,477,1043
est3=AHL745Z,1044,1817
est4=VHH607Z,1112,1763
est5=VHP655Z,1128,1790
est6=AHL527Z,1162,1784
est7=AHA124Z,1393,1641
Translated Amino Acid sequence 
KIQKFVKETPNSIITLLVFQNLKTIDAGARTLSAITFKNLVKDSWVDGDEVENPIPSNDK
EMVKSLLLNFILSAVNNTTQSQLVESLSMIGVSDFPQQWPSILPELIKQMESNTDIPTLS
IILRVLHSLLKKYRGQERNNQSLSELKYILSILPTPYLSLLIKTGVAVDANLQNEQQLVL
LLNCVHFLLEIFFSMSSVDLPEFFEDNLASFTNEFHRYLKFNTNFQSIILSSNDEEPSLL
KKIQTSICEIINLYTQIYDEEFSSFLQPFVQVVWGLLTQTSKDICNDPFVYASIRFLGTV
ATSISHKIFESPETLKQICSMIVTPNIELRESDIELYEDNHVEYMRR---

---IIFNDMTWARDADYPALVRLLQAFIKKEGSSIAPHLSAILGITEKLIMRVTHDHEAF
LILETVVETLDIQFLEKYLGGIFSMILTRITKKKTLKVVRCFTIFFSIFMIKYGVVKTAQ
TVRAIKDSLWEDILIKLWLPTVEDINGSIEKKIISISLTNMICCNDILATPELWIKLIQC
QSNVISGKKSQETEQAGAASDLYIDQAEANEGYVPTFTQLQFSKKVDVDPFPTISNPKEY
FISTFQTFKSQXKCSTPLLS
Translated Amino Acid sequence (All Frames) 
Frame A:
KIQKFVKETPNSIITLLVFQNLKTIDAGARTLSAITFKNLVKDSWVDGDEVENPIPSNDK
EMVKSLLLNFILSAVNNTTQSQLVESLSMIGVSDFPQQWPSILPELIKQMESNTDIPTLS
IILRVLHSLLKKYRGQERNNQSLSELKYILSILPTPYLSLLIKTGVAVDANLQNEQQLVL
LLNCVHFLLEIFFSMSSVDLPEFFEDNLASFTNEFHRYLKFNTNFQSIILSSNDEEPSLL
KKIQTSICEIINLYTQIYDEEFSSFLQPFVQVVWGLLTQTSKDICNDPFVYASIRFLGTV
ATSISHKIFESPETLKQICSMIVTPNIELRESDIELYEDNHVEYMRR---

---nhfq*ydlgs*crlssigtfassfh*kgrfidrsts*chlgyh*ethyeshs*srsf
phfrdcc*nfgysilgeilgwyllydsh*nhqkedpqsrtlfhyllfnlydqiwccqdcp
nr*shqrftlgrhfn*tlvtnsrryqwln*kenhfnlfnqydll**yfshtrtld*tnsm
sikcy*w*eisrd*tsrccf*slh*ss*s**rlcsnfystsilkes*r*sfpnnfkskri
fylyfpni*iskxm*ysitf

Frame B:
rfksllkrhqiq**hy*yfki*kp*mqeqehyqqlhski*lkivg*mamklriqfhqmtk
rw*kvyy*isfyqq*ttphnhnwsnhyq*lvylishnnglqsyqn*snkwnqtltfqhfq
ss*efyihs*knievkreiinhyln*nifyqfyqlhiyhy*lkqvlqlmqiykmnnn*fy
y*ivsisf*ksfsq*vqliyqnfskiislllqmnsidtlnliqifnqsffqvmmknhly*
krfklqfvkllifilkfmmrsfhhsfnhsyklfgdf*lklqkifvmihlfmhqldf*vq*
qhqfhikslkvqkh*nkfvq*llhqiln*enlilnymkiimlnicve---

---IIFNDMTWARDADYPALVRLLQAFIKKEGSSIAPHLSAILGITEKLIMRVTHDHEAF
LILETVVETLDIQFLEKYLGGIFSMILTRITKKKTLKVVRCFTIFFSIFMIKYGVVKTAQ
TVRAIKDSLWEDILIKLWLPTVEDINGSIEKKIISISLTNMICCNDILATPELWIKLIQC
QSNVISGKKSQETEQAGAASDLYIDQAEANEGYVPTFTQLQFSKKVDVDPFPTISNPKEY
FISTFQTFKSQXKCSTPLLS

Frame C:
dskvc*rdtkfnnniisiskfenhrcrskniisnyiqkfs*r*lgrwr*s*esnsik*qr
dgekfiikfhsisskqhhtitigriiindwci*fpttmafnltrinqtngikh*hsntfn
hlesftftlkki*rsrek*siii*ikiyfinftnsifiiin*nrccs*ckftk*ttisfi
iklcpfpfrnlflnefs*ftrifrr*srffyk*ip*ip*i*ykfsinhsfk***rtifie
kdsnfnl*ny*slysnl**gvfiipstirtsclgtfnsnfkryl**siclcin*ifryss
ninft*nl*ksrniktnlfndcytky*ikri*y*ii*r*sc*iya*r---

---sfsmi*lglvmpiiqhwyvcfklslkrkvhrslhilvpswvslrnsl*eslmitkls
sf*rlllklwifnswrntwvvssl*fslespkrrpsksyvvslssfqsl*snmvlsrlpk
plepskihfgktf*lnfgyqqskismaqlkrksfqsl*pi*svvmif*phqnfgln*fnv
nqmllvvrnlkrlnkpvlllistliklklmkvmfqlllnfnsqrkltlilsqqfqiqkni
lsllskhlnlkxnvvlhyfq
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U11461-1 (Contig-U11461-1Q)
/CSM_Contig/Contig-U11461-1Q.Seq.d
         (1826 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U11461-1 (Contig-U11461-1Q) /CSM_Contig/Conti...  3513  0.0
Contig-U01283-1 (Contig-U01283-1Q) /CSM_Contig/Conti...    40  0.008
Contig-U11796-1 (Contig-U11796-1Q) /CSM_Contig/Conti...    38  0.033
Contig-U14875-1 (Contig-U14875-1Q) /CSM_Contig/Conti...    36  0.13
Contig-U14162-1 (Contig-U14162-1Q) /CSM_Contig/Conti...    36  0.13
Contig-U13863-1 (Contig-U13863-1Q) /CSM_Contig/Conti...    36  0.13
Contig-U12948-1 (Contig-U12948-1Q) /CSM_Contig/Conti...    36  0.13
Contig-U12369-1 (Contig-U12369-1Q) /CSM_Contig/Conti...    36  0.13
Contig-U11745-1 (Contig-U11745-1Q) /CSM_Contig/Conti...    36  0.13
Contig-U10847-1 (Contig-U10847-1Q) /CSM_Contig/Conti...    36  0.13

>Contig-U11461-1 (Contig-U11461-1Q) /CSM_Contig/Contig-U11461-1Q.Seq.d
          Length = 1826

 Score = 3513 bits (1772), Expect = 0.0
 Identities = 1819/1826 (99%)
 Strand = Plus / Plus

                                                                        
Query: 1    aagattcaaaagtttgttaaagagacaccaaattcaataataacattattagtatttcaa 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    aagattcaaaagtttgttaaagagacaccaaattcaataataacattattagtatttcaa 60

                                                                        
Query: 61   aatttgaaaaccatagatgcaggagcaagaacattatcagcaattacattcaaaaattta 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   aatttgaaaaccatagatgcaggagcaagaacattatcagcaattacattcaaaaattta 120

                                                                        
Query: 121  gttaaagatagttgggtagatggcgatgaagttgagaatccaattccatcaaatgacaaa 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121  gttaaagatagttgggtagatggcgatgaagttgagaatccaattccatcaaatgacaaa 180

                                                                        
Query: 181  gagatggtgaaaagtttattattaaatttcattctatcagcagtaaacaacaccacacaa 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181  gagatggtgaaaagtttattattaaatttcattctatcagcagtaaacaacaccacacaa 240

                                                                        
Query: 241  tcacaattggtcgaatcattatcaatgattggtgtatctgatttcccacaacaatggcct 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241  tcacaattggtcgaatcattatcaatgattggtgtatctgatttcccacaacaatggcct 300

                                                                        
Query: 301  tcaatcttaccagaattaatcaaacaaatggaatcaaacactgacattccaacactttca 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301  tcaatcttaccagaattaatcaaacaaatggaatcaaacactgacattccaacactttca 360

                                                                        
Query: 361  atcatcttgagagttttacattcactcttnnnnnnntatagaggtcaagagagaaataat 420
            |||||||||||||||||||||||||||||       ||||||||||||||||||||||||
Sbjct: 361  atcatcttgagagttttacattcactcttaaaaaaatatagaggtcaagagagaaataat 420

                                                                        
Query: 421  caatcattatctgaattaaaatatattttatcaattttaccaactccatatttatcatta 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421  caatcattatctgaattaaaatatattttatcaattttaccaactccatatttatcatta 480

                                                                        
Query: 481  ttaattaaaacaggtgttgcagttgatgcaaatttacaaaatgaacaacaattagtttta 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481  ttaattaaaacaggtgttgcagttgatgcaaatttacaaaatgaacaacaattagtttta 540

                                                                        
Query: 541  ttattaaattgtgtccatttccttttagaaatctttttctcaatgagttcagttgattta 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541  ttattaaattgtgtccatttccttttagaaatctttttctcaatgagttcagttgattta 600

                                                                        
Query: 601  ccagaatttttcgaagataatctcgcttcttttacaaatgaattccatagataccttaaa 660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601  ccagaatttttcgaagataatctcgcttcttttacaaatgaattccatagataccttaaa 660

                                                                        
Query: 661  tttaatacaaattttcaatcaatcattctttcaagtaatgatgaagaaccatctttattg 720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661  tttaatacaaattttcaatcaatcattctttcaagtaatgatgaagaaccatctttattg 720

                                                                        
Query: 721  aaaaagattcaaacttcaatttgtgaaattattaatctttatactcaaatttatgatgag 780
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721  aaaaagattcaaacttcaatttgtgaaattattaatctttatactcaaatttatgatgag 780

                                                                        
Query: 781  gagttttcatcattccttcaaccattcgtacaagttgtttggggacttttaactcaaact 840
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781  gagttttcatcattccttcaaccattcgtacaagttgtttggggacttttaactcaaact 840

                                                                        
Query: 841  tcaaaagatatttgtaatgatccatttgtttatgcatcaattagatttttaggtacagta 900
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841  tcaaaagatatttgtaatgatccatttgtttatgcatcaattagatttttaggtacagta 900

                                                                        
Query: 901  gcaacatcaatttcacataaaatctttgaaagtccagaaacattaaaacaaatttgttca 960
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901  gcaacatcaatttcacataaaatctttgaaagtccagaaacattaaaacaaatttgttca 960

                                                                        
Query: 961  atgattgttacaccaaatattgaattaagagaatctgatattgaattatatgaagataat 1020
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961  atgattgttacaccaaatattgaattaagagaatctgatattgaattatatgaagataat 1020

                                                                        
Query: 1021 catgttgaatatatgcgtagagannnnnnnnnnaatcattttcaatgatatgacttgggc 1080
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 catgttgaatatatgcgtagagannnnnnnnnnaatcattttcaatgatatgacttgggc 1080

                                                                        
Query: 1081 tcgtgatgccgattatccagcattggtacgtttgcttcaagctttcattaaaaaggaagg 1140
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 tcgtgatgccgattatccagcattggtacgtttgcttcaagctttcattaaaaaggaagg 1140

                                                                        
Query: 1141 ttcatcgatcgctccacatcttagtgccatcttgggtatcactgagaaactcattatgag 1200
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 ttcatcgatcgctccacatcttagtgccatcttgggtatcactgagaaactcattatgag 1200

                                                                        
Query: 1201 agtcactcatgatcacgaagctttcctcattttagagactgttgttgaaactttggatat 1260
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 agtcactcatgatcacgaagctttcctcattttagagactgttgttgaaactttggatat 1260

                                                                        
Query: 1261 tcaattcttggagaaatacttgggtggtatcttctctatgattctcactagaatcaccaa 1320
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 tcaattcttggagaaatacttgggtggtatcttctctatgattctcactagaatcaccaa 1320

                                                                        
Query: 1321 aaagaagaccctcaaagtcgtacgttgtttcactatcttcttttcaatctttatgatcaa 1380
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 aaagaagaccctcaaagtcgtacgttgtttcactatcttcttttcaatctttatgatcaa 1380

                                                                        
Query: 1381 atatggtgttgtcaagactgcccaaaccgttagagccatcaaagattcactttgggaaga 1440
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1381 atatggtgttgtcaagactgcccaaaccgttagagccatcaaagattcactttgggaaga 1440

                                                                        
Query: 1441 cattttaattaaactttggttaccaacagtcgaagatatcaatggctcaattgaaaagaa 1500
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1441 cattttaattaaactttggttaccaacagtcgaagatatcaatggctcaattgaaaagaa 1500

                                                                        
Query: 1501 aatcatttcaatctctttaaccaatatgatctgttgtaatgatattttagccacaccaga 1560
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1501 aatcatttcaatctctttaaccaatatgatctgttgtaatgatattttagccacaccaga 1560

                                                                        
Query: 1561 actttggattaaactaattcaatgtcaatcaaatgttattagtggtaagaaatctcaaga 1620
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1561 actttggattaaactaattcaatgtcaatcaaatgttattagtggtaagaaatctcaaga 1620

                                                                        
Query: 1621 gactgaacaagccggtgctgcttctgatctctacattgatcaagctgaagctaatgaagg 1680
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1621 gactgaacaagccggtgctgcttctgatctctacattgatcaagctgaagctaatgaagg 1680

                                                                        
Query: 1681 ttatgttccaacttttactcaacttcaattctcaaagaaagttgacgttgatcctttccc 1740
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1681 ttatgttccaacttttactcaacttcaattctcaaagaaagttgacgttgatcctttccc 1740

                                                                        
Query: 1741 aacaatttcaaatccaaaagaatattttatctctactttccaaacatttaaatctcaaaa 1800
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1741 aacaatttcaaatccaaaagaatattttatctctactttccaaacatttaaatctcaaaa 1800

                                      
Query: 1801 naaatgtagtactccattactttcaa 1826
            ||||||||||||||||||||||||||
Sbjct: 1801 naaatgtagtactccattactttcaa 1826


>Contig-U01283-1 (Contig-U01283-1Q) /CSM_Contig/Contig-U01283-1Q.Seq.d
          Length = 1019

 Score = 40.1 bits (20), Expect = 0.008
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 992  aatctgatattgaattatatgaagataa 1019
            ||||| |||||||||||||| |||||||
Sbjct: 774  aatcttatattgaattatatcaagataa 801


>Contig-U11796-1 (Contig-U11796-1Q) /CSM_Contig/Contig-U11796-1Q.Seq.d
          Length = 1662

 Score = 38.2 bits (19), Expect = 0.033
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 925 tttgaaagtccagaaacat 943
           |||||||||||||||||||
Sbjct: 961 tttgaaagtccagaaacat 979


 Score = 30.2 bits (15), Expect = 8.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 876 atcaattagattttt 890
           |||||||||||||||
Sbjct: 669 atcaattagattttt 683


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 30,135
Number of Sequences: 6905
Number of extensions: 30135
Number of successful extensions: 3271
Number of sequences better than 10.0: 368
length of query: 1826
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1810
effective length of database: 5,564,391
effective search space: 10071547710
effective search space used: 10071547710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.25
Homology vs DNA 
Query= Contig-U11461-1 (Contig-U11461-1Q) /CSM_Contig/Contig-U11461-1Q.Seq.d
         (1826 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ354670) Dictyostelium discoideum cDNA clone:dda54j11, 3' ...  1526   0.0    1
(BJ446421) Dictyostelium discoideum cDNA clone:ddv62m14, 3' ...  1314   0.0    1
(BJ354642) Dictyostelium discoideum cDNA clone:dda54e07, 3' ...  1227   0.0    1
(BJ441256) Dictyostelium discoideum cDNA clone:ddv46m02, 3' ...  1211   0.0    1
(BJ427515) Dictyostelium discoideum cDNA clone:ddv62m14, 5' ...  1118   0.0    1
(BJ336571) Dictyostelium discoideum cDNA clone:dda54j11, 5' ...   771   0.0    2
(BJ347557) Dictyostelium discoideum cDNA clone:dda27o10, 3' ...   611   e-170  1
(BJ347795) Dictyostelium discoideum cDNA clone:dda31o05, 3' ...   367   1e-96  1
(AM424368) Vitis vinifera contig VV78X156762.2, whole genome...    52   0.076  1
(AE014820) Plasmodium falciparum 3D7 chromosome 14 section 5...    36   0.17   2
(AC184846) Zea mays chromosome 4 clone CH201-124P20; ZMMBBc0...    38   0.18   2
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    36   0.33   21
(CT573395) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    38   0.67   7
(AF016415) Caenorhabditis elegans cosmid C02A12, complete se...    34   0.72   2
(AM452409) Vitis vinifera contig VV78X146669.5, whole genome...    48   0.76   4
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    34   0.77   15
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    34   0.82   15
(EH013586) USDA-FP_186372 Lysiphlebus testaceipes adult whol...    34   0.84   2
(EH013219) USDA-FP_186041 Lysiphlebus testaceipes adult whol...    34   0.84   2
(EH009724) USDA-FP_182893 Lysiphlebus testaceipes adult whol...    34   0.84   2
(AC137668) Medicago truncatula clone mth2-5f8, complete sequ...    34   0.86   8
(BB357638) Mus musculus adult male corpus striatum cDNA, RIK...    38   0.88   2
(AL365362) Human DNA sequence from clone RP5-1017O19 on chro...    36   1.1    8
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    34   1.1    17
(CP000925) Synthetic Mycoplasma genitalium JCVI-1.0, complet...    48   1.2    1
(BD439871) Nucleotide Sequence of the Mycoplasma Genitalium ...    48   1.2    1
(AR300198) Sequence 1 from patent US 6537773.                      48   1.2    1
(EK352341) 1095468043789 Global-Ocean-Sampling_GS-31-01-01-1...    48   1.2    1
(EJ931136) 1093018807380 Global-Ocean-Sampling_GS-30-02-01-1...    48   1.2    1
(EJ924478) 1093018775748 Global-Ocean-Sampling_GS-30-02-01-1...    48   1.2    1
(EJ389801) 1092963904360 Global-Ocean-Sampling_GS-28-01-01-1...    48   1.2    1
(EI084688) hgw0001dc10.g1 hgw Oryza punctata genomic clone h...    48   1.2    1
(CT061362) Sus scrofa genomic clone PigE-65D6, genomic surve...    48   1.2    1
(DB539594) Homo sapiens hippocampus cDNA, RIKEN full-length ...    48   1.2    1
(CO070370) GR__Ea27G01.f GR__Ea Gossypium raimondii cDNA clo...    48   1.2    1
(L43967) Mycoplasma genitalium G37, complete genome.               48   1.2    1
(AC225487) Medicago truncatula clone mth2-35d7, WORKING DRAF...    32   1.3    9
(CP000001) Bacillus cereus E33L, complete genome.                  42   1.3    25
(AE017308) Mycoplasma mobile 163K complete genome.                 32   1.5    21
(CU855708) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   1.7    11
(BH690463) BOHVG46TR BO_2_3_KB Brassica oleracea genomic clo...    46   1.7    2
(BH719466) BOMBV95TR BO_2_3_KB Brassica oleracea genomic clo...    40   1.8    2
(BZ492221) BONPA68TR BO_1.6_2_KB_tot Brassica oleracea genom...    40   1.9    2
(AM454526) Vitis vinifera contig VV78X205918.5, whole genome...    36   1.9    3
(EK430700) 1095516149571 Global-Ocean-Sampling_GS-31-01-01-1...    36   2.0    2
(EK433458) 1095516170979 Global-Ocean-Sampling_GS-31-01-01-1...    36   2.0    2
(AM451265) Vitis vinifera contig VV78X080889.8, whole genome...    46   2.3    2
(AC180883) Strongylocentrotus purpuratus clone R3-3064N07, W...    36   2.5    2
(EU494505) Drosophila glabriapex voucher 109446 16S ribosoma...    36   2.5    2
(EU494497) Drosophila ambochila voucher 109433.1 16S ribosom...    36   2.5    2
(EU494458) Drosophila quinaria voucher 107542 16S ribosomal ...    36   2.6    2
(EU494457) Drosophila guttifera voucher 103968 16S ribosomal...    36   2.6    2
(EU494425) Chymomyza amoena voucher 107543 16S ribosomal RNA...    36   2.6    2
(EU494468) Drosophila mediodiffusa voucher 109396 16S riboso...    36   2.6    2
(EU494450) Drosophila macroptera voucher 109393 16S ribosoma...    36   2.6    2
(EU494517) Drosophila ochracea voucher 109447 16S ribosomal ...    36   2.6    2
(EU494470) Drosophila mediostriata voucher 109394 16S riboso...    36   2.6    2
(EU494469) Drosophila mediopictoides voucher 109395 16S ribo...    36   2.6    2
(EU494426) Chymomyza procnemis voucher 106326 16S ribosomal ...    36   2.6    2
(AC020650) Homo sapiens 3 BAC RP11-165B13 (Roswell Park Canc...    44   2.7    7
(CW942536) TcB24.1_D03_SP6 Tribolium BAC library Tribolium c...    40   2.7    2
(CP000825) Prochlorococcus marinus str. MIT 9215, complete g...    36   2.9    23
(AC148323) Mus musculus chromosome UNK clone RP24-410F16, **...    40   3.0    6
(EC433099) 132654155 Sea Urchin Gut cDNA library Strongyloce...    36   3.1    2
(BH154706) ENTTK14TR Entamoeba histolytica Sheared DNA Entam...    32   3.1    2
(EH009797) USDA-FP_182959 Lysiphlebus testaceipes adult whol...    32   3.2    2
(AC146332) Medicago truncatula clone mth2-7l17, complete seq...    38   3.5    6
(AC196676) Zea mays chromosome 8 clone ZMMBBb-427M18; ZMMBBb...    36   3.6    6
(AC160632) Mus musculus chromosome 8, clone RP24-319F9, comp...    34   3.7    7
(AC098818) Homo sapiens BAC clone RP11-109G23 from 4, comple...    36   4.5    7
(EV420302) 210787162 NGP Nasonia giraulti cDNA clone 161C23 ...    38   4.7    3
(CR759995) Xenopus tropicalis finished cDNA, clone TNeu065e03.     46   4.7    1
(BX914196) Zebrafish DNA sequence from clone DKEYP-71E8 in l...    46   4.7    1
(BC090579) Xenopus tropicalis frizzled homolog 7, mRNA (cDNA...    46   4.7    1
(AC140205) Mus musculus BAC clone RP24-344F2 from chromosome...    46   4.7    1
(AC149036) Xenopus tropicalis clone ISB1-271B14, *** SEQUENC...    46   4.7    1
(CT030209) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   4.7    1
(AC205552) Zea mays chromosome 4 clone CH201-335G8; ZMMBBc03...    46   4.7    1
(AC171677) Mus musculus chromosome 8 clone RP23-146H2 map 8,...    46   4.7    1
(AC171621) Mus musculus chromosome 8 clone RP24-304D7 map 8,...    46   4.7    1
(AC171092) Bos taurus clone CH240-241J6, WORKING DRAFT SEQUE...    46   4.7    1
(AC166154) Mus musculus chromosome 8 clone RP24-344F2 map 8,...    46   4.7    1
(BH429547) BOGXP06TF BOGX Brassica oleracea genomic clone BO...    46   4.7    1
(FH543032) CHO_OF4762xg24f1.ab1 CHO_OF4 Nicotiana tabacum ge...    46   4.7    1
(ER805973) PPTIH43TFB Solanum tuberosum RHPOTKEY BAC ends So...    46   4.7    1
(AL981232) Danio rerio genomic clone DKEY-31A9, genomic surv...    46   4.7    1
(DH233157) Oryzias latipes Fosmid clone:GOLWFno502_h09, reve...    46   4.7    1
(CL252188) ZMMBBb0602K22f ZMMBBb (HindIII) Zea mays subsp. m...    46   4.7    1
(BH927113) odi21b10.b1 B.oleracea002 Brassica oleracea genom...    46   4.7    1
(EL856587) CBXT12869.b1 NICHD_XGC_trop_25 Xenopus (Silurana)...    46   4.7    1
(EL841014) CBXT2812.b1 NICHD_XGC_trop_25 Xenopus (Silurana) ...    46   4.7    1
(DY034194) aof02-12ms1-a22 Aof02 Asparagus officinalis cDNA ...    46   4.7    1
(CX510032) JGI_XZG35809.fwd NIH_XGC_tropGas7 Xenopus (Silura...    46   4.7    1
(CX500070) JGI_XZG31546.fwd NIH_XGC_tropGas7 Xenopus (Silura...    46   4.7    1
(CX492640) JGI_XZG38901.fwd NIH_XGC_tropGas7 Xenopus (Silura...    46   4.7    1
(CX470560) JGI_XZG4450.fwd NIH_XGC_tropGas7 Xenopus (Siluran...    46   4.7    1
(CX460367) JGI_XZG28696.fwd NIH_XGC_tropGas7 Xenopus (Silura...    46   4.7    1
(CX454964) JGI_XZG56486.fwd NIH_XGC_tropGas7 Xenopus (Silura...    46   4.7    1
(CX453864) JGI_XZG55082.fwd NIH_XGC_tropGas7 Xenopus (Silura...    46   4.7    1
(CX450432) JGI_XZG27387.fwd NIH_XGC_tropGas7 Xenopus (Silura...    46   4.7    1

>(BJ354670) Dictyostelium discoideum cDNA clone:dda54j11, 3' end,
            single read.
          Length = 774

 Score = 1526 bits (770), Expect = 0.0
 Identities = 773/773 (100%)
 Strand = Plus / Minus


Query: 1054 aatcattttcaatgatatgacttgggctcgtgatgccgattatccagcattggtacgttt 1113
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774  aatcattttcaatgatatgacttgggctcgtgatgccgattatccagcattggtacgttt 715


Query: 1114 gcttcaagctttcattaaaaaggaaggttcatcgatcgctccacatcttagtgccatctt 1173
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714  gcttcaagctttcattaaaaaggaaggttcatcgatcgctccacatcttagtgccatctt 655


Query: 1174 gggtatcactgagaaactcattatgagagtcactcatgatcacgaagctttcctcatttt 1233
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654  gggtatcactgagaaactcattatgagagtcactcatgatcacgaagctttcctcatttt 595


Query: 1234 agagactgttgttgaaactttggatattcaattcttggagaaatacttgggtggtatctt 1293
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594  agagactgttgttgaaactttggatattcaattcttggagaaatacttgggtggtatctt 535


Query: 1294 ctctatgattctcactagaatcaccaaaaagaagaccctcaaagtcgtacgttgtttcac 1353
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534  ctctatgattctcactagaatcaccaaaaagaagaccctcaaagtcgtacgttgtttcac 475


Query: 1354 tatcttcttttcaatctttatgatcaaatatggtgttgtcaagactgcccaaaccgttag 1413
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474  tatcttcttttcaatctttatgatcaaatatggtgttgtcaagactgcccaaaccgttag 415


Query: 1414 agccatcaaagattcactttgggaagacattttaattaaactttggttaccaacagtcga 1473
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414  agccatcaaagattcactttgggaagacattttaattaaactttggttaccaacagtcga 355


Query: 1474 agatatcaatggctcaattgaaaagaaaatcatttcaatctctttaaccaatatgatctg 1533
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354  agatatcaatggctcaattgaaaagaaaatcatttcaatctctttaaccaatatgatctg 295


Query: 1534 ttgtaatgatattttagccacaccagaactttggattaaactaattcaatgtcaatcaaa 1593
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294  ttgtaatgatattttagccacaccagaactttggattaaactaattcaatgtcaatcaaa 235


Query: 1594 tgttattagtggtaagaaatctcaagagactgaacaagccggtgctgcttctgatctcta 1653
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234  tgttattagtggtaagaaatctcaagagactgaacaagccggtgctgcttctgatctcta 175


Query: 1654 cattgatcaagctgaagctaatgaaggttatgttccaacttttactcaacttcaattctc 1713
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174  cattgatcaagctgaagctaatgaaggttatgttccaacttttactcaacttcaattctc 115


Query: 1714 aaagaaagttgacgttgatcctttcccaacaatttcaaatccaaaagaatattttatctc 1773
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114  aaagaaagttgacgttgatcctttcccaacaatttcaaatccaaaagaatattttatctc 55


Query: 1774 tactttccaaacatttaaatctcaaaanaaatgtagtactccattactttcaa 1826
            |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54   tactttccaaacatttaaatctcaaaanaaatgtagtactccattactttcaa 2

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 2,358,049,518
Number of extensions: 146944612
Number of successful extensions: 12528945
Number of sequences better than 10.0: 136
Length of query: 1826
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1802
Effective length of database: 97,308,875,965
Effective search space: 175350594488930
Effective search space used: 175350594488930
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.30
Homology vs Protein 
Query= Contig-U11461-1 (Contig-U11461-1Q) /CSM_Contig/Contig-U11461-1Q.Seq.d
         (1826 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54E36) RecName: Full=Exportin-2;          Short=Exp2; AltName:...   635   e-180
CP001576_188(CP001576|pid:none) Micromonas sp. RCC299 chromosome...   236   2e-60
CP000581_572(CP000581|pid:none) Ostreococcus lucimarinus CCE9901...   216   2e-54
AM453689_1(AM453689|pid:none) Vitis vinifera contig VV78X270658....   203   1e-50
(Q8AY73) RecName: Full=Exportin-2;          Short=Exp2; AltName:...   202   4e-50
(Q9ZPY7) RecName: Full=Exportin-2;          Short=Exp2; AltName:...   201   1e-49
CR954201_552(CR954201|pid:none) Ostreococcus tauri strain OTTH05...   199   2e-49
(Q9ERK4) RecName: Full=Exportin-2;          Short=Exp2; AltName:...   199   3e-49
(P55060) RecName: Full=Exportin-2;          Short=Exp2; AltName:...   199   4e-49
AC134521_42(AC134521|pid:none) Medicago truncatula clone mth2-31...   199   4e-49
(Q5R9J2) RecName: Full=Exportin-2;          Short=Exp2; AltName:...   197   8e-49
(Q6GMY9) RecName: Full=Exportin-2;          Short=Exp2; AltName:...   197   1e-48
AF053641_1(AF053641|pid:none) Homo sapiens brain cellular apopto...   194   9e-48
CQ834424_1(CQ834424|pid:none) Sequence 295 from Patent WO2004058...   194   9e-48
(Q7SZC2) RecName: Full=Exportin-2;          Short=Exp2; AltName:...   193   2e-47
AE014134_2881(AE014134|pid:none) Drosophila melanogaster chromos...   192   4e-47
(Q9XZU1) RecName: Full=Exportin-2;          Short=Exp2; AltName:...   189   2e-46
AP001539_8(AP001539|pid:none) Oryza sativa Japonica Group genomi...   188   6e-46
L14838_1(L14838|pid:none) Saccharomyces cerevisia chromosome seg...   186   2e-45
CU928171_23(CU928171|pid:none) Kluyveromyces thermotolerans stra...   184   7e-45
CR382131_300(CR382131|pid:none) Yarrowia lipolytica strain CLIB1...   182   4e-44
CR382121_35(CR382121|pid:none) Kluyveromyces lactis strain NRRL ...   175   4e-42
AE016819_506(AE016819|pid:none) Ashbya gossypii (= Eremothecium ...   168   5e-40
FN392321_784(FN392321|pid:none) Pichia pastoris GS115 chromosome...   167   2e-39
AE017343_208(AE017343|pid:none) Cryptococcus neoformans var. neo...   159   4e-37
AM920435_1243(AM920435|pid:none) Penicillium chrysogenum Wiscons...   157   2e-36
AM270336_5(AM270336|pid:none) Aspergillus niger contig An15c0090...   154   8e-36
CR382138_1260(CR382138|pid:none) Debaryomyces hansenii chromosom...   154   1e-35
BX294025_1(BX294025|pid:none) Neurospora crassa DNA linkage grou...   153   2e-35
AP007164_109(AP007164|pid:none) Aspergillus oryzae RIB40 genomic...   132   3e-29
AC007863_7(AC007863|pid:none) Trypanosoma brucei chromosome 6 cl...   112   6e-23
AM494967_343(AM494967|pid:none) Leishmania braziliensis chromoso...   110   2e-22
AM502248_388(AM502248|pid:none) Leishmania infantum chromosome 30.    108   7e-22
AK298477_1(AK298477|pid:none) Homo sapiens cDNA FLJ59371 complet...   106   3e-21
AB170359_1(AB170359|pid:none) Macaca fascicularis brain cDNA clo...   106   3e-21
AB169047_1(AB169047|pid:none) Macaca fascicularis testis cDNA, c...   105   4e-21
CQ834488_1(CQ834488|pid:none) Sequence 359 from Patent WO2004058...   105   4e-21
AF053640_1(AF053640|pid:none) Homo sapiens trachea cellular apop...    88   9e-16
AL606589_6(AL606589|pid:none) Oryza sativa genomic DNA, chromoso...    69   6e-10
CR855116_8(CR855116|pid:none) Oryza sativa genomic DNA, chromoso...    69   6e-10
CR940353_492(CR940353|pid:none) Theileria annulata strain Ankara...    65   1e-08
Z49149_10(Z49149|pid:none) S.cerevisiae DNA; chromosome VII, lef...    61   1e-07
AB027856_1(AB027856|pid:none) Schizosaccharomyces pombe gene for...    60   3e-07
AL163527_7(AL163527|pid:none) Arabidopsis thaliana DNA chromosom...    59   8e-07
AK117271_1(AK117271|pid:none) Arabidopsis thaliana At2g31660 mRN...    58   1e-06
AM476248_1(AM476248|pid:none) Vitis vinifera contig VV78X100552....    54   2e-05
AC007071_18(AC007071|pid:none) Arabidopsis thaliana chromosome 2...    53   3e-05
CP001333_13(CP001333|pid:none) Micromonas sp. RCC299 chromosome ...    53   4e-05
(Q55CX9) RecName: Full=Probable importin-7 homolog;                    52   6e-05
AK039534_1(AK039534|pid:none) Mus musculus adult male spinal cor...    51   2e-04
AK053498_1(AK053498|pid:none) Mus musculus 0 day neonate eyeball...    50   2e-04
BC064673_1(BC064673|pid:none) Danio rerio importin 7, mRNA (cDNA...    50   3e-04
BC066524_1(BC066524|pid:none) Danio rerio importin 7, mRNA (cDNA...    50   3e-04
AJ295844_1(AJ295844|pid:none) Homo sapiens partial RANBP7 gene f...    50   3e-04
AE014296_1449(AE014296|pid:none) Drosophila melanogaster chromos...    49   6e-04
(O59809) RecName: Full=Probable importin c550.11;  &AL023592_11(...    49   6e-04
BT004887_1(BT004887|pid:none) Drosophila melanogaster GH01576 fu...    49   6e-04
CU638744_565(CU638744|pid:none) Podospora anserina genomic DNA c...    49   6e-04
CP000496_623(CP000496|pid:none) Pichia stipitis CBS 6054 chromos...    49   8e-04
BC070553_1(BC070553|pid:none) Xenopus laevis hypothetical protei...    47   0.002
BC155060_1(BC155060|pid:none) Danio rerio importin 7, mRNA (cDNA...    47   0.002
AM920437_2005(AM920437|pid:none) Penicillium chrysogenum Wiscons...    47   0.002
(Q10297) RecName: Full=Importin subunit beta-5; AltName: Full=Ka...    47   0.003
CR382138_238(CR382138|pid:none) Debaryomyces hansenii strain CBS...    45   0.012
AP006852_34(AP006852|pid:none) Candida albicans genomic DNA, chr...    44   0.015
AM270370_9(AM270370|pid:none) Aspergillus niger contig An16c0180...    44   0.015
CR382128_739(CR382128|pid:none) Yarrowia lipolytica strain CLIB1...    44   0.015
AP006852_373(AP006852|pid:none) Candida albicans genomic DNA, ch...    44   0.015
AP007171_539(AP007171|pid:none) Aspergillus oryzae RIB40 genomic...    44   0.020
CR382139_1019(CR382139|pid:none) Debaryomyces hansenii strain CB...    44   0.026
FN392319_1392(FN392319|pid:none) Pichia pastoris GS115 chromosom...    42   0.075
BC044819_1(BC044819|pid:none) Mus musculus importin 8, mRNA (cDN...    42   0.075
BC054373_1(BC054373|pid:none) Mus musculus importin 8, mRNA (cDN...    42   0.075
BC151036_1(BC151036|pid:none) Mus musculus importin 8, mRNA (cDN...    42   0.075
AC079829_18(AC079829|pid:none) Arabidopsis thaliana chromosome 1...    42   0.075
BC068908_1(BC068908|pid:none) Xenopus laevis hypothetical protei...    42   0.098
FM992694_368(FM992694|pid:none) Candida dubliniensis CD36 chromo...    41   0.13
FN392320_230(FN392320|pid:none) Pichia pastoris GS115 chromosome...    41   0.17
BC168434_1(BC168434|pid:none) Xenopus tropicalis importin 11, mR...    40   0.22
FN392320_724(FN392320|pid:none) Pichia pastoris GS115 chromosome...    40   0.28
BC031900_1(BC031900|pid:none) Mus musculus importin 11, mRNA (cD...    40   0.37
AK044487_1(AK044487|pid:none) Mus musculus adult retina cDNA, RI...    40   0.37
AK087793_1(AK087793|pid:none) Mus musculus 2 days pregnant adult...    40   0.37
(O15397) RecName: Full=Importin-8;          Short=Imp8; AltName:...    40   0.37
(Q8K2V6) RecName: Full=Importin-11;          Short=Imp11; AltNam...    40   0.37
(Q9UI26) RecName: Full=Importin-11;          Short=Imp11; AltNam...    39   0.48
CR790375_2(CR790375|pid:none) Zebrafish DNA sequence from clone ...    39   0.48
AK001696_1(AK001696|pid:none) Homo sapiens cDNA FLJ10834 fis, cl...    39   0.48
CR751229_2(CR751229|pid:none) Zebrafish DNA sequence from clone ...    39   0.48
U77494_1(U77494|pid:none) Homo sapiens RANBP8 mRNA, complete cds.      39   0.48
AP004333_20(AP004333|pid:none) Oryza sativa Japonica Group genom...    39   0.63
FM992695_53(FM992695|pid:none) Candida dubliniensis CD36 chromos...    39   0.83
BX544884_1(BX544884|pid:none) Zebrafish DNA sequence from clone ...    38   1.4
BC074042_1(BC074042|pid:none) Danio rerio zgc:91897, mRNA (cDNA ...    38   1.4
FN357418_19(FN357418|pid:none) Schistosoma mansoni genome sequen...    38   1.4
CT573126_1(CT573126|pid:none) Zebrafish DNA sequence from clone ...    38   1.4
CR628365_5(CR628365|pid:none) Zebrafish DNA sequence from clone ...    37   2.4
BC059203_1(BC059203|pid:none) Danio rerio importin 9, mRNA (cDNA...    37   2.4
(Q02932) RecName: Full=Importin beta-like protein KAP120; AltNam...    37   3.1
AC144806_11(AC144806|pid:none) Medicago truncatula clone mth2-34...    36   4.1
CR380954_336(CR380954|pid:none) Candida glabrata strain CBS138 c...    36   4.1
BA000026_184(BA000026|pid:none) Mycoplasma penetrans HF-2 DNA, c...    36   4.1
CU928178_255(CU928178|pid:none) Zygosaccharomyces rouxii strain ...    36   4.1
CR382136_177(CR382136|pid:none) Debaryomyces hansenii strain CBS...    36   4.1
CP000724_4241(CP000724|pid:none) Alkaliphilus metalliredigens QY...    29   5.1
CR380955_67(CR380955|pid:none) Candida glabrata strain CBS138 ch...    36   5.4
AC135320_28(AC135320|pid:none) Medicago truncatula clone mth2-28...    36   5.4
AM920436_226(AM920436|pid:none) Penicillium chrysogenum Wisconsi...    36   5.4
(P53067) RecName: Full=Importin subunit beta-5; AltName: Full=Ka...    35   7.0
AM942760_12(AM942760|pid:none) Proteus mirabilis pHI4320 plasmid...    35   7.0
(Q96P70) RecName: Full=Importin-9;          Short=Imp9; AltName:...    35   9.1
(O94545) RecName: Full=Importin beta-like protein kap113; AltNam...    35   9.1
(Q91YE6) RecName: Full=Importin-9;          Short=Imp9; AltName:...    35   9.1
EF083222_1(EF083222|pid:none) Picea sitchensis clone WS0277_L13 ...    35   9.1
CP001078_1350(CP001078|pid:none) Clostridium botulinum E3 str. A...    35   9.1
CR382130_499(CR382130|pid:none) Yarrowia lipolytica strain CLIB1...    35   9.1
AF273673_1(AF273673|pid:none) Mus musculus Importin9 isoform 2 (...    35   9.1

>(Q54E36) RecName: Full=Exportin-2;          Short=Exp2; AltName:
            Full=Importin-alpha re-exporter;
          Length = 951

 Score =  635 bits (1637), Expect = e-180
 Identities = 328/347 (94%), Positives = 328/347 (94%)
 Frame = +1

Query: 1    KIQKFVKETPNSIITLLVFQNLKTIDAGARTLSAITFKNLVKDSWVDGDEVENPIPSNDK 180
            KIQKFVKETPNSIITLLVFQNLKTIDAGARTLSAITFKNLVKDSWVDGDEVENPIPSNDK
Sbjct: 32   KIQKFVKETPNSIITLLVFQNLKTIDAGARTLSAITFKNLVKDSWVDGDEVENPIPSNDK 91

Query: 181  EMVKSLLLNFILSAVNNTTQSQLVESLSMIGVSDFPQQWPSILPELIKQMESNTDIPTLS 360
            EMVKSLLLNFILSAVNNTTQSQLVESLSMIGVSDFPQQWPSILPELIKQMESNTDIPTLS
Sbjct: 92   EMVKSLLLNFILSAVNNTTQSQLVESLSMIGVSDFPQQWPSILPELIKQMESNTDIPTLS 151

Query: 361  IILRVLHSLLKKYRGQERNNQSLSELKYILSILPTPYLSLLIKTGVAVDAXXXXXXXXXX 540
            IILRVLHSLLKKYRGQERNNQSLSELKYILSILPTPYLSLLIKTGVAVDA
Sbjct: 152  IILRVLHSLLKKYRGQERNNQSLSELKYILSILPTPYLSLLIKTGVAVDANLQNEQQLVL 211

Query: 541  XXXXXXXXXEIFFSMSSVDLPEFFEDNLASFTNEFHRYLKFNTNFQSIILSSNDEEPSLL 720
                     EIFFSMSSVDLPEFFEDNLASFTNEFHRYLKFNTNFQSIILSSNDEEPSLL
Sbjct: 212  LLNCVHFLLEIFFSMSSVDLPEFFEDNLASFTNEFHRYLKFNTNFQSIILSSNDEEPSLL 271

Query: 721  KKIQTSICEIINLYTQIYDEEFSSFLQPFVQVVWGLLTQTSKDICNDPFVYASIRFLGTV 900
            KKIQTSICEIINLYTQIYDEEFSSFLQPFVQVVWGLLTQTSKDICNDPFVYASIRFLGTV
Sbjct: 272  KKIQTSICEIINLYTQIYDEEFSSFLQPFVQVVWGLLTQTSKDICNDPFVYASIRFLGTV 331

Query: 901  ATSISHKIFESPETLKQICSMIVTPNIELRESDIELYEDNHVEYMRR 1041
            ATSISHKIFESPETLKQICSMIVTPNIELRESDIELYEDNHVEYMRR
Sbjct: 332  ATSISHKIFESPETLKQICSMIVTPNIELRESDIELYEDNHVEYMRR 378

 Score =  461 bits (1186), Expect = e-128
 Identities = 238/258 (92%), Positives = 239/258 (92%), Gaps = 1/258 (0%)
 Frame = +2

Query: 1055 IIFNDMTWARDADYPALVRLLQAFIKKEGSSIAPHLSAILGITEKLIMRVTHDHEAFLIL 1234
            IIFNDMTWARDADYPALVRLLQAFIKKEGSSIAPHLSAILGITEKLIMRVTHDHEAFLIL
Sbjct: 688  IIFNDMTWARDADYPALVRLLQAFIKKEGSSIAPHLSAILGITEKLIMRVTHDHEAFLIL 747

Query: 1235 ETVVETLDIQFLEKYLGGIFSMXXXXXXXXXXXXXXXCFTIFFSIFMIKYGVVKTAQTVR 1414
            ETVVETLDIQFLEKYLGGIFSM               CFTIFFSIFMIKYGVVKTAQTVR
Sbjct: 748  ETVVETLDIQFLEKYLGGIFSMILTRITKKKTLKVVRCFTIFFSIFMIKYGVVKTAQTVR 807

Query: 1415 AIKDSLWEDILIKLWLPTVEDINGSIEKKIISISLTNMICCNDILATPELWIKLIQCQSN 1594
            AIKDSLWEDILIKLWLPTVEDINGSIEKKIISISLTNMICCNDILATPELWIKLIQCQSN
Sbjct: 808  AIKDSLWEDILIKLWLPTVEDINGSIEKKIISISLTNMICCNDILATPELWIKLIQCQSN 867

Query: 1595 VISGKKSQETEQAGAASDLYIDQAEANEGYVPTFTQLQFSKKVDVDPFPTISNPKEYFIS 1774
            VISGKKSQETEQAGAASDLYIDQAEANEGYVPTFTQLQFSKKVDVDPFPTISNPKEYFIS
Sbjct: 868  VISGKKSQETEQAGAASDLYIDQAEANEGYVPTFTQLQFSKKVDVDPFPTISNPKEYFIS 927

Query: 1775 TFQTFKSQXK-CSTPLLS 1825
            TFQTFKSQ +   TPLLS
Sbjct: 928  TFQTFKSQNEMLVTPLLS 945

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 2,717,093,574
Number of extensions: 51161258
Number of successful extensions: 138811
Number of sequences better than 10.0: 117
Number of HSP's gapped: 138547
Number of HSP's successfully gapped: 153
Length of query: 608
Length of database: 1,051,180,864
Length adjustment: 135
Effective length of query: 473
Effective length of database: 614,245,399
Effective search space: 290538073727
Effective search space used: 290538073727
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.96  gvh: 0.48  alm: 0.28  top: 0.47  tms: 0.20  mit: 0.29  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: mitochondrial
	 24.0 %: plasma membrane
	 24.0 %: endoplasmic reticulum
	  8.0 %: extracellular, including cell wall
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: nuclear
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U11461-1 is mit
VS (DIR, S) 0
VH (FL, L) 2
VF (FL, S) 0
AH (FL, L) 3
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0