Contig-U11442-1
Contig ID Contig-U11442-1
Contig update 2002.12.18
Contig sequence
>Contig-U11442-1 (Contig-U11442-1Q) /CSM_Contig/Contig-U11442-1Q.Seq.d
ATTATATTATATATTTTTTTTTTTATTNATTTTTATTTGTATNGNCAATA
AACCTGTTTTTTTAATTTATGTATATTAAAATTATTTAATTTAATCGAAA
TTATAAATGGATAATAATAATAATATTACTAGTGGTGGTAATATTACTAC
AAACAACAACAATAATACAACAACTACTACCGCTACTAGTAACAATATTA
TATTACCAATTATAAAGACAAGTTTAAATGGATCGAAGTTAGAATTGAAT
GAAGTTGTACTTAAAGAGACATATGTACTTCGTAATTTCAAATTAATAAA
TACAGTTGATTATCCAGTACAAGTCAAATTGAAATCAGATTTACCACAAG
TTGCATTCCAATTAAACAATGAGAATATGCAAGATGATTCAGATGAAACA
CCAATACAAGATGATGATTTCAATCAATTATTCAATGAAGTGAATTTAAT
TGATCAAGTCAATTTGGCACCAAAAGAAATTAAAAATATAGTTATTTCAT
ATCGTCCATTTGATCAACAATTATCACAACCACCAAAACAACAACAACAA
TTAATACAAGATGACCAATCAAATATAGATAATAATGGTAATAATACAGA
TAGTTCAACACCAAATATAGATTTAATTGAAAATATAAATAATGAAAGTA
ATACAGATAATAATAATAATAATAATAATAGTAATAATAATGATACAACA
AAAGAAAGTAATGACGAGAATAAAGAATTAAATGATAAAGATGAAATTAT
AA----------TTTTAAAGTATGGTAAATCATTATTGGGAGGTAAGCTA
TCGACACACCAACAAAAGAATAAAACCATACGTGTATCGAGTAGAGTTTG
TACATCGGGTTGTAAAGATACCATCAGAGATTAATTTGGGTGATTGCACA
GTCGGGTAGCATCAAAGGATACACTATACAATTGGTTAATCTTTCAGATT
TAACAGCTCATCTTCAATTGAGATATCAATCAAAGGTTGTATCATTCAAG
AATCAAACATTCTCAATTGCACCTAAACAAACCTACGATTTACAAATGGA
GTTTTTACCACGTAAAAATAATCCAGACTATCGTAAACAAATCACTTTTA
TCAATTTAAAGAATCCAATAATGGATGATCAACAACAGTTCCTAGAGGTA
CGTGCAAATAATATCGATGAACATTCAGTTTCTGTTCATTCTAAATTTTA
TCATCTAGAAACTTCATACAATAAGAGTTATATCGATTTCGATGAAACCA
TTGTAAATTGTCCATCCGTTCGTACGTTTAGTATAAAAAATGTTAGTAAA
GGTACATTGGTTCTAAATCTTTCTACCTCTTTACCAGATGAAATTAAATT
ATATACAGAGGAGAGAGAACTCTCATTATTGGTATCACAAAATCAATCAT
TAGCAAATTCAACTACAAAACAAAATCTTCAAGAATATCTCTCAAAATTC
TTTGATGAAAATAAAGATAATTCAAATGTAGTTGGGGTTCAAATAAAGTG
GTAAAGTCAATATTTAGATTAGCATTAAATCCAA

Gap gap included
Contig length 1524
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 2462614
End point 2461086
Strand (PLUS/MINUS) MINUS
Number of clones 2
Number of EST 4
Link to clone list U11442
List of clone(s)

est1=AHK816F,1,491
est2=VHM881F,84,752
est3=AHK816Z,753,1525
est4=VHM881Z,803,1489
Translated Amino Acid sequence
lyyiffflxificxxnkpvfliyvy*nyli*skl*MDNNNNITSGGNITTNNNNNTTTTT
ATSNNIILPIIKTSLNGSKLELNEVVLKETYVLRNFKLINTVDYPVQVKLKSDLPQVAFQ
LNNENMQDDSDETPIQDDDFNQLFNEVNLIDQVNLAPKEIKNIVISYRPFDQQLSQPPKQ
QQQLIQDDQSNIDNNGNNTDSSTPNIDLIENINNESNTDNNNNNNNSNNNDTTKESNDEN
KELNDKDEII---

---LKYGKSLLGGKLSTHQQKNKTIRVSSRVCTSGCKDTIRD*fg*lhsrvaskdtlynw
lifqi*qlifn*dinqrlyhsrikhsqlhlnkptiykwsfyhvkiiqtivnksllsi*ri
q*wminnss*ryvqiismniqflfilnfii*klhtirvisismkpl*ivhpfvrlv*kml
vkvhwf*iflplyqmklnyiqrrenshywyhkinh*qiqlqnkifknisqnslmkikiiq
m*lgfk*sgkvni*isiks


Translated Amino Acid sequence (All Frames)
Frame A:
iilyifffixfylyxq*tcffnlcilklfnlieiing****yy*ww*yyykqqq*ynnyy
ry**qyyitnykdkfkwievrie*sct*rdicts*fqinkys*lsstsqieirfttscip
ikq*eyar*fr*ntntr**fqsiiq*sefn*ssqfgtkrn*kysyfissi*stiitttkt
tttintr*pikyr**w**yr*fntkyrfn*kyk**k*yr************ynkrk**re
*rik**r*ny---

---f*smvnhywevsyrhtnkrikpyvyrvefvhrvvkipseinlgdctvg*hqrihyti
g*sfrfnssssieisikgciiqesnilnct*tnlrftngvftt*k*srls*tnhfyqfke
snng*sttvprgtck*yr*tfsfcsf*ilssrnfiq*elyrfr*nhcklsirsyv*ykkc
**ryigsksfylftr*n*iiyrgertliigitksiiskfnyktkssrislkil**k*r*f
kcswgsnkvvksifrlalnp

Frame B:
lyyiffflxificxxnkpvfliyvy*nyli*skl*MDNNNNITSGGNITTNNNNNTTTTT
ATSNNIILPIIKTSLNGSKLELNEVVLKETYVLRNFKLINTVDYPVQVKLKSDLPQVAFQ
LNNENMQDDSDETPIQDDDFNQLFNEVNLIDQVNLAPKEIKNIVISYRPFDQQLSQPPKQ
QQQLIQDDQSNIDNNGNNTDSSTPNIDLIENINNESNTDNNNNNNNSNNNDTTKESNDEN
KELNDKDEII---

---fkvw*iiigr*aidtptke*nhtcie*slyigl*ryhqrliwviaqsgsikgytiql
vnlsdltahlqlryqskvvsfknqtfsiapkqtydlqmeflprknnpdyrkqitfinlkn
pimddqqqflevrannidehsvsvhskfyhletsynksyidfdetivncpsvrtfsiknv
skgtlvlnlstslpdeiklyteerelsllvsqnqslansttkqnlqeylskffdenkdns
nvvgvqikw*sqyld*h*iq

Frame C:
yiiyfffyxflfvxxinlff*fmyikii*fnrnykwiiiiillvvvillqtttiiqqllp
llvtilyyql*rqv*mdrs*n*mklylkrhmyfvisn**iqliiqyksn*nqiyhklhsn
*tmrickmiqmkhqykmmisinysmk*i*liksiwhqkklki*lfhivhlinnyhnhqnn
nnn*ykmtnqi*iimviiqivqhqi*i*lki*imkviqiiiiiiiiviimiqqkkvmtri
kn*mikmkl*---

---LKYGKSLLGGKLSTHQQKNKTIRVSSRVCTSGCKDTIRD*fg*lhsrvaskdtlynw
lifqi*qlifn*dinqrlyhsrikhsqlhlnkptiykwsfyhvkiiqtivnksllsi*ri
q*wminnss*ryvqiismniqflfilnfii*klhtirvisismkpl*ivhpfvrlv*kml
vkvhwf*iflplyqmklnyiqrrenshywyhkinh*qiqlqnkifknisqnslmkikiiq
m*lgfk*sgkvni*isiks

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U11442-1 (Contig-U11442-1Q)
/CSM_Contig/Contig-U11442-1Q.Seq.d
(1534 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U11442-1 (Contig-U11442-1Q) /CSM_Contig/Conti... 1612 0.0
Contig-U09968-1 (Contig-U09968-1Q) /CSM_Contig/Conti... 46 1e-04
Contig-U12169-1 (Contig-U12169-1Q) /CSM_Contig/Conti... 44 4e-04
Contig-U11039-1 (Contig-U11039-1Q) /CSM_Contig/Conti... 44 4e-04
Contig-U06374-1 (Contig-U06374-1Q) /CSM_Contig/Conti... 44 4e-04
Contig-U14518-1 (Contig-U14518-1Q) /CSM_Contig/Conti... 42 0.002
Contig-U14360-1 (Contig-U14360-1Q) /CSM_Contig/Conti... 42 0.002
Contig-U12168-1 (Contig-U12168-1Q) /CSM_Contig/Conti... 42 0.002
Contig-U12014-1 (Contig-U12014-1Q) /CSM_Contig/Conti... 42 0.002
Contig-U11728-1 (Contig-U11728-1Q) /CSM_Contig/Conti... 42 0.002

>Contig-U11442-1 (Contig-U11442-1Q) /CSM_Contig/Contig-U11442-1Q.Seq.d
Length = 1534

Score = 1612 bits (813), Expect = 0.0
Identities = 843/843 (100%)
Strand = Plus / Plus


Query: 692 gatacaacaaaagaaagtaatgacgagaataaagaattaaatgataaagatgaaattata 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 gatacaacaaaagaaagtaatgacgagaataaagaattaaatgataaagatgaaattata 751


Query: 752 annnnnnnnnnttttaaagtatggtaaatcattattgggaggtaagctatcgacacacca 811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 annnnnnnnnnttttaaagtatggtaaatcattattgggaggtaagctatcgacacacca 811


Query: 812 acaaaagaataaaaccatacgtgtatcgagtagagtttgtacatcgggttgtaaagatac 871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 acaaaagaataaaaccatacgtgtatcgagtagagtttgtacatcgggttgtaaagatac 871


Query: 872 catcagagattaatttgggtgattgcacagtcgggtagcatcaaaggatacactatacaa 931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 catcagagattaatttgggtgattgcacagtcgggtagcatcaaaggatacactatacaa 931


Query: 932 ttggttaatctttcagatttaacagctcatcttcaattgagatatcaatcaaaggttgta 991
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 932 ttggttaatctttcagatttaacagctcatcttcaattgagatatcaatcaaaggttgta 991


Query: 992 tcattcaagaatcaaacattctcaattgcacctaaacaaacctacgatttacaaatggag 1051
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 992 tcattcaagaatcaaacattctcaattgcacctaaacaaacctacgatttacaaatggag 1051


Query: 1052 tttttaccacgtaaaaataatccagactatcgtaaacaaatcacttttatcaatttaaag 1111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1052 tttttaccacgtaaaaataatccagactatcgtaaacaaatcacttttatcaatttaaag 1111


Query: 1112 aatccaataatggatgatcaacaacagttcctagaggtacgtgcaaataatatcgatgaa 1171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1112 aatccaataatggatgatcaacaacagttcctagaggtacgtgcaaataatatcgatgaa 1171


Query: 1172 cattcagtttctgttcattctaaattttatcatctagaaacttcatacaataagagttat 1231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1172 cattcagtttctgttcattctaaattttatcatctagaaacttcatacaataagagttat 1231


Query: 1232 atcgatttcgatgaaaccattgtaaattgtccatccgttcgtacgtttagtataaaaaat 1291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1232 atcgatttcgatgaaaccattgtaaattgtccatccgttcgtacgtttagtataaaaaat 1291


Query: 1292 gttagtaaaggtacattggttctaaatctttctacctctttaccagatgaaattaaatta 1351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1292 gttagtaaaggtacattggttctaaatctttctacctctttaccagatgaaattaaatta 1351


Query: 1352 tatacagaggagagagaactctcattattggtatcacaaaatcaatcattagcaaattca 1411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1352 tatacagaggagagagaactctcattattggtatcacaaaatcaatcattagcaaattca 1411


Query: 1412 actacaaaacaaaatcttcaagaatatctctcaaaattctttgatgaaaataaagataat 1471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1412 actacaaaacaaaatcttcaagaatatctctcaaaattctttgatgaaaataaagataat 1471


Query: 1472 tcaaatgtagttggggttcaaataaagtggtaaagtcaatatttagattagcattaaatc 1531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1472 tcaaatgtagttggggttcaaataaagtggtaaagtcaatatttagattagcattaaatc 1531


Query: 1532 caa 1534
|||
Sbjct: 1532 caa 1534


Score = 965 bits (487), Expect = 0.0
Identities = 487/487 (100%)
Strand = Plus / Plus


Query: 126 ttactagtggtggtaatattactacaaacaacaacaataatacaacaactactaccgcta 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 ttactagtggtggtaatattactacaaacaacaacaataatacaacaactactaccgcta 185


Query: 186 ctagtaacaatattatattaccaattataaagacaagtttaaatggatcgaagttagaat 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ctagtaacaatattatattaccaattataaagacaagtttaaatggatcgaagttagaat 245


Query: 246 tgaatgaagttgtacttaaagagacatatgtacttcgtaatttcaaattaataaatacag 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tgaatgaagttgtacttaaagagacatatgtacttcgtaatttcaaattaataaatacag 305


Query: 306 ttgattatccagtacaagtcaaattgaaatcagatttaccacaagttgcattccaattaa 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ttgattatccagtacaagtcaaattgaaatcagatttaccacaagttgcattccaattaa 365


Query: 366 acaatgagaatatgcaagatgattcagatgaaacaccaatacaagatgatgatttcaatc 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 acaatgagaatatgcaagatgattcagatgaaacaccaatacaagatgatgatttcaatc 425


Query: 426 aattattcaatgaagtgaatttaattgatcaagtcaatttggcaccaaaagaaattaaaa 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 aattattcaatgaagtgaatttaattgatcaagtcaatttggcaccaaaagaaattaaaa 485


Query: 486 atatagttatttcatatcgtccatttgatcaacaattatcacaaccaccaaaacaacaac 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 atatagttatttcatatcgtccatttgatcaacaattatcacaaccaccaaaacaacaac 545


Query: 546 aacaattaatacaagatgaccaatcaaatatagataataatggtaataatacagatagtt 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 aacaattaatacaagatgaccaatcaaatatagataataatggtaataatacagatagtt 605


Query: 606 caacacc 612
|||||||
Sbjct: 606 caacacc 612


Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/32 (100%)
Strand = Plus / Plus


Query: 25 attnatttttatttgtatngncaataaacctg 56
||||||||||||||||||||||||||||||||
Sbjct: 25 attnatttttatttgtatngncaataaacctg 56


>Contig-U09968-1 (Contig-U09968-1Q) /CSM_Contig/Contig-U09968-1Q.Seq.d
Length = 1142

Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus


Query: 524 tcacaaccaccaaaacaacaacaacaa 550
|||||||||||| ||||||||||||||
Sbjct: 930 tcacaaccaccacaacaacaacaacaa 956


>Contig-U12169-1 (Contig-U12169-1Q) /CSM_Contig/Contig-U12169-1Q.Seq.d
Length = 1698

Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus


Query: 521 ttatcacaaccaccaaaacaacaacaacaa 550
||||||||||||||| |||||||||||||
Sbjct: 1333 ttatcacaaccaccaccacaacaacaacaa 1362


Score = 36.2 bits (18), Expect = 0.11
Identities = 21/22 (95%)
Strand = Plus / Plus


Query: 529 accaccaaaacaacaacaacaa 550
||||||| ||||||||||||||
Sbjct: 1344 accaccacaacaacaacaacaa 1365


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 37,891
Number of Sequences: 6905
Number of extensions: 37891
Number of successful extensions: 8049
Number of sequences better than 10.0: 820
length of query: 1534
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1518
effective length of database: 5,564,391
effective search space: 8446745538
effective search space used: 8446745538
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.25
Homology vs DNA
Query= Contig-U11442-1 (Contig-U11442-1Q) /CSM_Contig/Contig-U11442-1Q.Seq.d
(1534 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ444555) Dictyostelium discoideum cDNA clone:ddv56b22, 3' ... 1275 0.0 2
(BJ354009) Dictyostelium discoideum cDNA clone:dda52p04, 3' ... 1249 0.0 2
(BJ425755) Dictyostelium discoideum cDNA clone:ddv56b22, 5' ... 765 0.0 3
(BJ335963) Dictyostelium discoideum cDNA clone:dda52p04, 5' ... 603 e-168 1
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-... 44 0.031 9
(AC116960) Dictyostelium discoideum chromosome 2 map complem... 32 0.038 13
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 36 0.057 17
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 36 0.10 16
(EY349220) CAWZ16923.fwd CAWZ Helobdella robusta Primary Lat... 32 0.14 4
(AE014831) Plasmodium falciparum 3D7 chromosome 10 section 3... 36 0.20 12
(AC181364) Strongylocentrotus purpuratus clone R3-113H02, WO... 50 0.25 1
(AC168836) Strongylocentrotus purpuratus clone R3-13C9, WORK... 50 0.25 1
(AC168829) Strongylocentrotus purpuratus clone R3-13D20, WOR... 50 0.25 1
(EY327160) CAWY12430.fwd CAWY Helobdella robusta Subtracted ... 50 0.25 1
(CP000963) Clostridium botulinum A3 str. Loch Maree plasmid ... 40 0.27 15
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 42 0.31 13
(BJ378476) Dictyostelium discoideum cDNA clone:ddc31h05, 3' ... 36 0.35 3
(EK296934) 1095462350544 Global-Ocean-Sampling_GS-31-01-01-1... 38 0.36 2
(AE014819) Plasmodium falciparum 3D7 chromosome 14 section 4... 38 0.48 11
(CR385043) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 36 0.53 9
(AC180594) Strongylocentrotus purpuratus clone R3-3092I18, W... 36 0.59 9
(DQ481667) Takifugu rubripes HoxCa gene cluster, complete se... 36 0.85 5
(AC214469) Populus trichocarpa clone POP093-K16, complete se... 40 0.89 7
(AR378748) Sequence 3754 from patent US 6605709. 48 1.00 1
(AC121733) Rattus norvegicus clone CH230-278C6, WORKING DRAF... 48 1.00 1
(AC098214) Rattus norvegicus clone CH230-112P23, WORKING DRA... 48 1.00 1
(AC164031) Bos taurus clone CH240-143I13, *** SEQUENCING IN ... 48 1.00 1
(AM942759) Proteus mirabilis strain HI4320, complete genome. 48 1.00 1
(ER335228) 1092344300381 Global-Ocean-Sampling_GS-34-01-01-1... 36 1.0 3
(AE014841) Plasmodium falciparum 3D7 chromosome 11 section 6... 36 1.0 10
(BX950193) Zebrafish DNA sequence from clone CH211-183A18 in... 34 1.5 4
(EJ346131) 1092963549700 Global-Ocean-Sampling_GS-28-01-01-1... 32 1.6 4
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098... 34 1.8 8
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 34 2.3 11
(AC141069) Homo sapiens chromosome 16 clone RP11-155B7, WORK... 40 2.5 4
(BJ404741) Dictyostelium discoideum cDNA clone:dds29a17, 3' ... 36 2.7 2
(AC116032) Dictyostelium discoideum chromosome 2 map 4158743... 34 2.8 5
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ... 36 3.1 19
(AY292861) Boechera drummondii zing finger transcription fac... 42 3.2 5
(BV586058) G591P632973FB1.T0 Clint Pan troglodytes verus STS... 32 3.2 3
(AC114261) Dictyostelium discoideum chromosome 2 map 126059-... 34 3.8 5
(CR385035) Zebrafish DNA sequence from clone DKEY-182I1 in l... 46 3.9 1
(AY787816) Perga condei mitochondrion, partial genome. 46 3.9 1
(CT737279) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 3.9 1
(AC184734) Atelerix albiventris clone LB4-490E6, WORKING DRA... 46 3.9 1
(AC184006) Atelerix albiventris clone LB4-408C5, WORKING DRA... 46 3.9 1
(AC172714) Atelerix albiventris clone LB4-266D19, WORKING DR... 46 3.9 1
(FH006863) CHO_OF407xe03f2.ab1 CHO_OF Nicotiana tabacum geno... 46 3.9 1
(ET728970) CHO_OF149xi23r2.ab1 CHO_OF Nicotiana tabacum geno... 46 3.9 1
(EK249545) 1095460271873 Global-Ocean-Sampling_GS-31-01-01-1... 46 3.9 1
(EI713848) 2B421005G09TF BAC library from breast tumor sampl... 46 3.9 1
(EI389559) POTD775TR Solanum tuberosum RHPOTKEY BAC ends Sol... 46 3.9 1
(ED812001) ML__Ba0068B12r ML__Ba Mimulus lewisii genomic, ge... 46 3.9 1
(DU521839) 1098609854084 CHORI-243 Ovis aries genomic clone ... 46 3.9 1
(CR966135) mth4-4D22RM1 BAC end, cultivar Jemalong A17 of Me... 46 3.9 1
(CK289587) EST752309 Nicotiana benthamiana mixed tissue cDNA... 46 3.9 1
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 46 3.9 1
(AE002142) Ureaplasma parvum serovar 3 str. ATCC 700970 sect... 46 3.9 1
(BH761640) BMBAC324C07SP6_PSU Brugia malayi Genomic Bac Libr... 38 4.0 2
(AC115606) Dictyostelium discoideum chromosome 2 map 159760-... 36 4.1 5
(EJ981572) 1093022157378 Global-Ocean-Sampling_GS-30-02-01-1... 30 4.3 4
(DD061342) Methods and nucleic acids for the analysis of he... 34 4.3 6
(AX598904) Sequence 244 from Patent WO02077272. 34 4.3 6
(DH694481) Rattus norvegicus DNA, BAC clone: RNB1-252G07, 3'... 36 4.7 2
(EJ033640) 1095454062275 Global-Ocean-Sampling_GS-26-01-01-1... 36 4.7 2
(EJ967254) 1093022052127 Global-Ocean-Sampling_GS-30-02-01-1... 30 5.2 4
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 36 5.4 7
(CU571271) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 5.6 7
(AC024382) Homo sapiens chromosome 8, clone RP11-351C8, comp... 34 5.7 8
(CP000498) Pichia stipitis CBS 6054 chromosome 4, complete s... 32 6.1 2
(AC103324) Rattus norvegicus clone CH230-116K16, WORKING DRA... 34 7.0 2
(AC106480) Rattus norvegicus clone CH230-170I15, *** SEQUENC... 34 7.1 2
(AC128340) Rattus norvegicus clone CH230-188O10, *** SEQUENC... 32 7.1 2
(AC161299) Atelerix albiventris clone LB4-20O10, WORKING DRA... 32 7.2 2
(AM431592) Vitis vinifera contig VV78X274527.7, whole genome... 40 7.3 3
(AC164255) Bos taurus clone CH240-136B6, *** SEQUENCING IN P... 40 7.3 6
(CR354557) Zebrafish DNA sequence from clone DKEY-34I7 in li... 32 7.4 2
(AC140955) Didelphis virginiana clone LB3-197O4, WORKING DRA... 34 7.4 6
(EJ596342) 1092961090373 Global-Ocean-Sampling_GS-29-01-01-1... 38 8.5 3
(BE153207) PM0-HT0335-050400-007-F08 HT0335 Homo sapiens cDN... 40 9.2 2
(AE014848) Plasmodium falciparum 3D7 chromosome 12, section ... 34 9.3 11
(AC180376) Strongylocentrotus purpuratus clone R3-3113A18, W... 36 9.4 6
(AC093038) Homo sapiens BAC clone RP13-541C6 from 2, complet... 40 9.5 5
(AC115280) Rattus norvegicus clone CH230-217J13, *** SEQUENC... 38 9.6 4
(CC137457) NDL.45O24.T7 Notre Dame Liverpool Aedes aegypti g... 32 9.7 2
(FE857033) CAFU949.rev CAFU Pichia stipitis oxygen limited d... 32 9.8 2
(EJ784214) 1093017302726 Global-Ocean-Sampling_GS-30-02-01-1... 34 9.8 2
(FE844906) CAFH679.rev CAFH Pichia stipitis aerobic dextrose... 32 9.8 2
(FE857272) CAFW1111.rev CAFW Pichia stipitis oxygen limited ... 32 9.8 2
(EJ890298) 1093018438559 Global-Ocean-Sampling_GS-30-02-01-1... 34 9.8 2
(FE846369) CAFI697.rev CAFI Pichia stipitis aerobic dextrose... 32 9.8 2
(FE856098) CAFU451.rev CAFU Pichia stipitis oxygen limited d... 32 9.8 2
(FE856099) CAFU451.fwd CAFU Pichia stipitis oxygen limited d... 32 9.8 2

>(BJ444555) Dictyostelium discoideum cDNA clone:ddv56b22, 3' end,
single read.
Length = 684

Score = 1275 bits (643), Expect(2) = 0.0
Identities = 643/643 (100%)
Strand = Plus / Minus


Query: 813 caaaagaataaaaccatacgtgtatcgagtagagtttgtacatcgggttgtaaagatacc 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 caaaagaataaaaccatacgtgtatcgagtagagtttgtacatcgggttgtaaagatacc 625


Query: 873 atcagagattaatttgggtgattgcacagtcgggtagcatcaaaggatacactatacaat 932
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 atcagagattaatttgggtgattgcacagtcgggtagcatcaaaggatacactatacaat 565


Query: 933 tggttaatctttcagatttaacagctcatcttcaattgagatatcaatcaaaggttgtat 992
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tggttaatctttcagatttaacagctcatcttcaattgagatatcaatcaaaggttgtat 505


Query: 993 cattcaagaatcaaacattctcaattgcacctaaacaaacctacgatttacaaatggagt 1052
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cattcaagaatcaaacattctcaattgcacctaaacaaacctacgatttacaaatggagt 445


Query: 1053 ttttaccacgtaaaaataatccagactatcgtaaacaaatcacttttatcaatttaaaga 1112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttttaccacgtaaaaataatccagactatcgtaaacaaatcacttttatcaatttaaaga 385


Query: 1113 atccaataatggatgatcaacaacagttcctagaggtacgtgcaaataatatcgatgaac 1172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atccaataatggatgatcaacaacagttcctagaggtacgtgcaaataatatcgatgaac 325


Query: 1173 attcagtttctgttcattctaaattttatcatctagaaacttcatacaataagagttata 1232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 attcagtttctgttcattctaaattttatcatctagaaacttcatacaataagagttata 265


Query: 1233 tcgatttcgatgaaaccattgtaaattgtccatccgttcgtacgtttagtataaaaaatg 1292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tcgatttcgatgaaaccattgtaaattgtccatccgttcgtacgtttagtataaaaaatg 205


Query: 1293 ttagtaaaggtacattggttctaaatctttctacctctttaccagatgaaattaaattat 1352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ttagtaaaggtacattggttctaaatctttctacctctttaccagatgaaattaaattat 145


Query: 1353 atacagaggagagagaactctcattattggtatcacaaaatcaatcattagcaaattcaa 1412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 atacagaggagagagaactctcattattggtatcacaaaatcaatcattagcaaattcaa 85


Query: 1413 ctacaaaacaaaatcttcaagaatatctctcaaaattctttga 1455
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84 ctacaaaacaaaatcttcaagaatatctctcaaaattctttga 42

Score = 34.2 bits (17), Expect(2) = 0.0
Identities = 17/17 (100%)
Strand = Plus / Minus


Query: 1483 tggggttcaaataaagt 1499
|||||||||||||||||
Sbjct: 17 tggggttcaaataaagt 1

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,574,434,498
Number of extensions: 99930954
Number of successful extensions: 8040875
Number of sequences better than 10.0: 95
Length of query: 1534
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1510
Effective length of database: 97,308,875,965
Effective search space: 146936402707150
Effective search space used: 146936402707150
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.30
Homology vs Protein
Query= Contig-U11442-1 (Contig-U11442-1Q) /CSM_Contig/Contig-U11442-1Q.Seq.d
(1534 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AE017343_25(AE017343|pid:none) Cryptococcus neoformans var. neof... 114 7e-24
CP000078_59(CP000078|pid:none) Leishmania major strain Friedlin ... 65 7e-09
AM494939_56(AM494939|pid:none) Leishmania braziliensis chromosom... 64 1e-08
AC007862_7(AC007862|pid:none) Trypanosoma brucei chromosome 2 cl... 58 1e-06
CP000049_384(CP000049|pid:none) Borrelia turicatae 91E135, compl... 38 0.86
AM286415_821(AM286415|pid:none) Yersinia enterocolitica subsp. e... 38 0.86
AE014187_412(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 38 0.86
AL844504_153(AL844504|pid:none) Plasmodium falciparum 3D7 chromo... 38 0.86
AM233362_876(AM233362|pid:none) Francisella tularensis subsp. ho... 38 1.1
CP000608_915(CP000608|pid:none) Francisella tularensis subsp. tu... 38 1.1
CP000439_1050(CP000439|pid:none) Francisella tularensis subsp. n... 37 1.9
AL844504_199(AL844504|pid:none) Plasmodium falciparum 3D7 chromo... 37 1.9
CP000123_228(CP000123|pid:none) Mycoplasma capricolum subsp. cap... 36 3.3
AE014185_184(AE014185|pid:none) Plasmodium falciparum 3D7 chromo... 36 4.3
AJ969108_1(AJ969108|pid:none) Capsicum chlorosis virus partial m... 35 5.6
CR382139_799(CR382139|pid:none) Debaryomyces hansenii strain CBS... 35 7.3
AM999887_1292(AM999887|pid:none) Wolbachia endosymbiont of Culex... 35 7.3
CP000087_1322(CP000087|pid:none) Rickettsia bellii RML369-C, com... 35 7.3
CP000716_291(CP000716|pid:none) Thermosipho melanesiensis BI429,... 35 9.6
EU807988_19(EU807988|pid:none) Helicobacter pylori strain Shi170... 35 9.6
CP001176_885(CP001176|pid:none) Bacillus cereus B4264, complete ... 35 9.6
CP001433_57(CP001433|pid:none) Borrelia valaisiana VS116 plasmid... 35 9.6
AE014186_337(AE014186|pid:none) Plasmodium falciparum 3D7 chromo... 35 9.6

>AE017343_25(AE017343|pid:none) Cryptococcus neoformans var.
neoformans JEC21 chromosome 3, complete sequence.
Length = 1860

Score = 114 bits (286), Expect = 7e-24
Identities = 56/157 (35%), Positives = 97/157 (61%)
Frame = +2

Query: 905 GSIKGYTIQLVNLSDLTAHLQLRYQSKVVSFKNQTFSIAPKQTYDLQMEFLPRKNNPDYR 1084
G+ K TI++ NLS+L+ +++ SKV+S I PK+ + +MEF PR+ N Y
Sbjct: 720 GASKSTTIKIENLSELSTKVEIAAMSKVLSVNKSVIVIPPKEVVEEKMEFFPRRINEKYE 779

Query: 1085 KQITFINLKNPIMDDQQQFLEVRANNIDEHSVSVHSKFYHLETSYNKSYIDFDETIVNCP 1264
KQI NL N D Q +E+++ N+D +++++HS Y + T +++DF ++N P
Sbjct: 780 KQIFIRNLLNRAND---QLVEIKSRNVDVYNLTLHSHLYRILTPSGSNFLDFGSVVINSP 836

Query: 1265 SVRTFSIKNVSKGTLVLNLSTSLPDEIKLYTEERELS 1375
+VR +I+N+S+ LVL+LS S P++I+L+ + + S
Sbjct: 837 TVRIINIENLSRAPLVLDLSASQPEDIELFVKAEDSS 873

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,786,639,867
Number of extensions: 31029027
Number of successful extensions: 85624
Number of sequences better than 10.0: 23
Number of HSP's gapped: 85506
Number of HSP's successfully gapped: 25
Length of query: 511
Length of database: 1,040,966,779
Length adjustment: 133
Effective length of query: 378
Effective length of database: 614,796,874
Effective search space: 232393218372
Effective search space used: 232393218372
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.75 gvh: 0.32 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.28 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
40.0 %: nuclear
8.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: vacuolar

>> prediction for Contig-U11442-1 is cyt

VS (DIR, S) 0
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 1
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0