Contig-U11442-1 |
Contig ID |
Contig-U11442-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
gap included |
Contig length |
1524 |
Chromosome number (1..6, M) |
1 |
Chromosome length |
4919822 |
Start point |
2462614 |
End point |
2461086 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
2 |
Number of EST |
4 |
Link to clone list |
U11442 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.25 |
Homology vs DNA |
Query= Contig-U11442-1 (Contig-U11442-1Q) /CSM_Contig/Contig-U11442-1Q.Seq.d (1534 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ444555) Dictyostelium discoideum cDNA clone:ddv56b22, 3' ... 1275 0.0 2 (BJ354009) Dictyostelium discoideum cDNA clone:dda52p04, 3' ... 1249 0.0 2 (BJ425755) Dictyostelium discoideum cDNA clone:ddv56b22, 5' ... 765 0.0 3 (BJ335963) Dictyostelium discoideum cDNA clone:dda52p04, 5' ... 603 e-168 1 (AC114263) Dictyostelium discoideum chromosome 2 map 215673-... 44 0.031 9 (AC116960) Dictyostelium discoideum chromosome 2 map complem... 32 0.038 13 (AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 36 0.057 17 (AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 36 0.10 16 (EY349220) CAWZ16923.fwd CAWZ Helobdella robusta Primary Lat... 32 0.14 4 (AE014831) Plasmodium falciparum 3D7 chromosome 10 section 3... 36 0.20 12 (AC181364) Strongylocentrotus purpuratus clone R3-113H02, WO... 50 0.25 1 (AC168836) Strongylocentrotus purpuratus clone R3-13C9, WORK... 50 0.25 1 (AC168829) Strongylocentrotus purpuratus clone R3-13D20, WOR... 50 0.25 1 (EY327160) CAWY12430.fwd CAWY Helobdella robusta Subtracted ... 50 0.25 1 (CP000963) Clostridium botulinum A3 str. Loch Maree plasmid ... 40 0.27 15 (AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 42 0.31 13 (BJ378476) Dictyostelium discoideum cDNA clone:ddc31h05, 3' ... 36 0.35 3 (EK296934) 1095462350544 Global-Ocean-Sampling_GS-31-01-01-1... 38 0.36 2 (AE014819) Plasmodium falciparum 3D7 chromosome 14 section 4... 38 0.48 11 (CR385043) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 36 0.53 9 (AC180594) Strongylocentrotus purpuratus clone R3-3092I18, W... 36 0.59 9 (DQ481667) Takifugu rubripes HoxCa gene cluster, complete se... 36 0.85 5 (AC214469) Populus trichocarpa clone POP093-K16, complete se... 40 0.89 7 (AR378748) Sequence 3754 from patent US 6605709. 48 1.00 1 (AC121733) Rattus norvegicus clone CH230-278C6, WORKING DRAF... 48 1.00 1 (AC098214) Rattus norvegicus clone CH230-112P23, WORKING DRA... 48 1.00 1 (AC164031) Bos taurus clone CH240-143I13, *** SEQUENCING IN ... 48 1.00 1 (AM942759) Proteus mirabilis strain HI4320, complete genome. 48 1.00 1 (ER335228) 1092344300381 Global-Ocean-Sampling_GS-34-01-01-1... 36 1.0 3 (AE014841) Plasmodium falciparum 3D7 chromosome 11 section 6... 36 1.0 10 (BX950193) Zebrafish DNA sequence from clone CH211-183A18 in... 34 1.5 4 (EJ346131) 1092963549700 Global-Ocean-Sampling_GS-28-01-01-1... 32 1.6 4 (AC115599) Dictyostelium discoideum chromosome 2 map 4229098... 34 1.8 8 (AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 34 2.3 11 (AC141069) Homo sapiens chromosome 16 clone RP11-155B7, WORK... 40 2.5 4 (BJ404741) Dictyostelium discoideum cDNA clone:dds29a17, 3' ... 36 2.7 2 (AC116032) Dictyostelium discoideum chromosome 2 map 4158743... 34 2.8 5 (BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ... 36 3.1 19 (AY292861) Boechera drummondii zing finger transcription fac... 42 3.2 5 (BV586058) G591P632973FB1.T0 Clint Pan troglodytes verus STS... 32 3.2 3 (AC114261) Dictyostelium discoideum chromosome 2 map 126059-... 34 3.8 5 (CR385035) Zebrafish DNA sequence from clone DKEY-182I1 in l... 46 3.9 1 (AY787816) Perga condei mitochondrion, partial genome. 46 3.9 1 (CT737279) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 3.9 1 (AC184734) Atelerix albiventris clone LB4-490E6, WORKING DRA... 46 3.9 1 (AC184006) Atelerix albiventris clone LB4-408C5, WORKING DRA... 46 3.9 1 (AC172714) Atelerix albiventris clone LB4-266D19, WORKING DR... 46 3.9 1 (FH006863) CHO_OF407xe03f2.ab1 CHO_OF Nicotiana tabacum geno... 46 3.9 1 (ET728970) CHO_OF149xi23r2.ab1 CHO_OF Nicotiana tabacum geno... 46 3.9 1 (EK249545) 1095460271873 Global-Ocean-Sampling_GS-31-01-01-1... 46 3.9 1 (EI713848) 2B421005G09TF BAC library from breast tumor sampl... 46 3.9 1 (EI389559) POTD775TR Solanum tuberosum RHPOTKEY BAC ends Sol... 46 3.9 1 (ED812001) ML__Ba0068B12r ML__Ba Mimulus lewisii genomic, ge... 46 3.9 1 (DU521839) 1098609854084 CHORI-243 Ovis aries genomic clone ... 46 3.9 1 (CR966135) mth4-4D22RM1 BAC end, cultivar Jemalong A17 of Me... 46 3.9 1 (CK289587) EST752309 Nicotiana benthamiana mixed tissue cDNA... 46 3.9 1 (CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 46 3.9 1 (AE002142) Ureaplasma parvum serovar 3 str. ATCC 700970 sect... 46 3.9 1 (BH761640) BMBAC324C07SP6_PSU Brugia malayi Genomic Bac Libr... 38 4.0 2 (AC115606) Dictyostelium discoideum chromosome 2 map 159760-... 36 4.1 5 (EJ981572) 1093022157378 Global-Ocean-Sampling_GS-30-02-01-1... 30 4.3 4 (DD061342) Methods and nucleic acids for the analysis of he... 34 4.3 6 (AX598904) Sequence 244 from Patent WO02077272. 34 4.3 6 (DH694481) Rattus norvegicus DNA, BAC clone: RNB1-252G07, 3'... 36 4.7 2 (EJ033640) 1095454062275 Global-Ocean-Sampling_GS-26-01-01-1... 36 4.7 2 (EJ967254) 1093022052127 Global-Ocean-Sampling_GS-30-02-01-1... 30 5.2 4 (AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 36 5.4 7 (CU571271) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 5.6 7 (AC024382) Homo sapiens chromosome 8, clone RP11-351C8, comp... 34 5.7 8 (CP000498) Pichia stipitis CBS 6054 chromosome 4, complete s... 32 6.1 2 (AC103324) Rattus norvegicus clone CH230-116K16, WORKING DRA... 34 7.0 2 (AC106480) Rattus norvegicus clone CH230-170I15, *** SEQUENC... 34 7.1 2 (AC128340) Rattus norvegicus clone CH230-188O10, *** SEQUENC... 32 7.1 2 (AC161299) Atelerix albiventris clone LB4-20O10, WORKING DRA... 32 7.2 2 (AM431592) Vitis vinifera contig VV78X274527.7, whole genome... 40 7.3 3 (AC164255) Bos taurus clone CH240-136B6, *** SEQUENCING IN P... 40 7.3 6 (CR354557) Zebrafish DNA sequence from clone DKEY-34I7 in li... 32 7.4 2 (AC140955) Didelphis virginiana clone LB3-197O4, WORKING DRA... 34 7.4 6 (EJ596342) 1092961090373 Global-Ocean-Sampling_GS-29-01-01-1... 38 8.5 3 (BE153207) PM0-HT0335-050400-007-F08 HT0335 Homo sapiens cDN... 40 9.2 2 (AE014848) Plasmodium falciparum 3D7 chromosome 12, section ... 34 9.3 11 (AC180376) Strongylocentrotus purpuratus clone R3-3113A18, W... 36 9.4 6 (AC093038) Homo sapiens BAC clone RP13-541C6 from 2, complet... 40 9.5 5 (AC115280) Rattus norvegicus clone CH230-217J13, *** SEQUENC... 38 9.6 4 (CC137457) NDL.45O24.T7 Notre Dame Liverpool Aedes aegypti g... 32 9.7 2 (FE857033) CAFU949.rev CAFU Pichia stipitis oxygen limited d... 32 9.8 2 (EJ784214) 1093017302726 Global-Ocean-Sampling_GS-30-02-01-1... 34 9.8 2 (FE844906) CAFH679.rev CAFH Pichia stipitis aerobic dextrose... 32 9.8 2 (FE857272) CAFW1111.rev CAFW Pichia stipitis oxygen limited ... 32 9.8 2 (EJ890298) 1093018438559 Global-Ocean-Sampling_GS-30-02-01-1... 34 9.8 2 (FE846369) CAFI697.rev CAFI Pichia stipitis aerobic dextrose... 32 9.8 2 (FE856098) CAFU451.rev CAFU Pichia stipitis oxygen limited d... 32 9.8 2 (FE856099) CAFU451.fwd CAFU Pichia stipitis oxygen limited d... 32 9.8 2
>(BJ444555) Dictyostelium discoideum cDNA clone:ddv56b22, 3' end, single read. Length = 684
Score = 1275 bits (643), Expect(2) = 0.0 Identities = 643/643 (100%) Strand = Plus / Minus
Query: 813 caaaagaataaaaccatacgtgtatcgagtagagtttgtacatcgggttgtaaagatacc 872 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 684 caaaagaataaaaccatacgtgtatcgagtagagtttgtacatcgggttgtaaagatacc 625
Query: 873 atcagagattaatttgggtgattgcacagtcgggtagcatcaaaggatacactatacaat 932 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 624 atcagagattaatttgggtgattgcacagtcgggtagcatcaaaggatacactatacaat 565
Query: 933 tggttaatctttcagatttaacagctcatcttcaattgagatatcaatcaaaggttgtat 992 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 564 tggttaatctttcagatttaacagctcatcttcaattgagatatcaatcaaaggttgtat 505
Query: 993 cattcaagaatcaaacattctcaattgcacctaaacaaacctacgatttacaaatggagt 1052 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 504 cattcaagaatcaaacattctcaattgcacctaaacaaacctacgatttacaaatggagt 445
Query: 1053 ttttaccacgtaaaaataatccagactatcgtaaacaaatcacttttatcaatttaaaga 1112 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 444 ttttaccacgtaaaaataatccagactatcgtaaacaaatcacttttatcaatttaaaga 385
Query: 1113 atccaataatggatgatcaacaacagttcctagaggtacgtgcaaataatatcgatgaac 1172 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 384 atccaataatggatgatcaacaacagttcctagaggtacgtgcaaataatatcgatgaac 325
Query: 1173 attcagtttctgttcattctaaattttatcatctagaaacttcatacaataagagttata 1232 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 324 attcagtttctgttcattctaaattttatcatctagaaacttcatacaataagagttata 265
Query: 1233 tcgatttcgatgaaaccattgtaaattgtccatccgttcgtacgtttagtataaaaaatg 1292 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 264 tcgatttcgatgaaaccattgtaaattgtccatccgttcgtacgtttagtataaaaaatg 205
Query: 1293 ttagtaaaggtacattggttctaaatctttctacctctttaccagatgaaattaaattat 1352 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 204 ttagtaaaggtacattggttctaaatctttctacctctttaccagatgaaattaaattat 145
Query: 1353 atacagaggagagagaactctcattattggtatcacaaaatcaatcattagcaaattcaa 1412 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 144 atacagaggagagagaactctcattattggtatcacaaaatcaatcattagcaaattcaa 85
Query: 1413 ctacaaaacaaaatcttcaagaatatctctcaaaattctttga 1455 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 84 ctacaaaacaaaatcttcaagaatatctctcaaaattctttga 42
Score = 34.2 bits (17), Expect(2) = 0.0 Identities = 17/17 (100%) Strand = Plus / Minus
Query: 1483 tggggttcaaataaagt 1499 ||||||||||||||||| Sbjct: 17 tggggttcaaataaagt 1
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 1,574,434,498 Number of extensions: 99930954 Number of successful extensions: 8040875 Number of sequences better than 10.0: 95 Length of query: 1534 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 1510 Effective length of database: 97,308,875,965 Effective search space: 146936402707150 Effective search space used: 146936402707150 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 6.30 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
1 |
VF (FL, S) |
0 |
AH (FL, L) |
1 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |