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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U11440-1
Contig ID Contig-U11440-1
Contig update 2002.12.18
Contig sequence 
>Contig-U11440-1 (Contig-U11440-1Q) /CSM_Contig/Contig-U11440-1Q.Seq.d
TATTATTGGTGCAATTTTAGATATTGAATCTTATTATAGAAGAGAATTTT
ACACAACCCAAAATTTTGGAGTGTTGGACAAATGTGTAAACCTTTTCGTT
GATTTAGNNNNNNNNN----------NNNNNNNNNNAATAAAAGAATGAA
TGATACATTAAAATTAAGAGAAAACCTTGAAAAATCAATTAAAATTACAA
GAAAAATTAAAAATTGATCAAGAGAATCTTGGTAATCCAAATGTGCAATT
ATTTACTGATGAAATTCGTGATCAATACTTTTATTATAGAACTACTTTAT
TAGATTCTGATAATGATGATTCTGATGAATATTATTATTATGATGATTCT
GATGAATATGAACAATATAATGCAAAAGATTTAATTGATCATCCAACTTC
TAATGATACCACCACTGTCACTACAACAACTGCCACTACTACTACAACCG
CTACTGAAGAATCAATTATTATTGATGGTGAAGATGAATTTGTAAATATT
GATTCAAATAGTTCTTCCTCAGAATTTGAAGATGGTGATGAAGATCTCTT
AGAGATTAAAAGATTACAAGAAATTGATGACCAAGTATTAGAAAAAGAAA
ATCAATTAATTGTACAAGAACAAAAACAAATTGATTTGGTCTTTAAAGTT
TTAGAAATGTATCAAGATGAAAAGTTTGGTTTAGATTTTGATAAAGTATT
TTCAGTTTGTTCAGATTCAAAGAATTTATCTCAAGCAATTAAAAAAATGA
CTAATTACTTGGATGAAAATTATTATTCCAATCAATATGGTATAACTCAA
ACTTATCTTTTAATTAAAGAACGTTTATCTTTTACTTTCCCAAATTTATC
ATTAACTGTAATTGATCGTGCTATCAAAGAATCAAAATAAATCANATAAA
GCTA
Gap gap included
Contig length 894
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 1214418
End point 1213541
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 2
Link to clone list U11440
List of clone(s) 

est1=AHK553F,1,107
est2=AHK553Z,108,876
Translated Amino Acid sequence 
IIGAILDIESYYRREFYTTQNFGVLDKCVNLFVDLXXX---

---XXXNKRMNDTLKLRENLEKSIKITRKIKN*sresw*skcaiiy**ns*silll*nyf
irf****f**illl**f**i*ti*ckrfn*ssnf**yhhchynnchyyynry*rinyy*w
*r*icky*fk*fflri*rw**rslrd*kitrn**psirkrksinctrtktn*fgl*sfrn
vsr*kvwfrf**sifslfrfkefissn*knd*llg*kllfqsiwynsnlsfn*rtfifyf
pkfiincn*scyqrikinxikl
Translated Amino Acid sequence (All Frames) 
Frame A:
yywcnfry*ill*krilhnpkfwsvgqmckpfr*fxxx---

---xxxx*kne*yikikrkp*kin*nykkn*klikrilviqmcnyllmkfvintfiiell
y*ilimmilmniiimmilmnmnnimqki*liiqllmipplslqqlplllqpllknqlllm
vkmnl*iliqivlpqnlkmvmkis*rlkdykklmtky*kkkin*lyknknkliwslkf*k
cikmkslv*ilikyfqfvqiqriylkqlkk*litwmkiiipinmv*lklif*lknvylll
sqiyh*l*livlsknqnksxka

Frame B:
IIGAILDIESYYRREFYTTQNFGVLDKCVNLFVDLXXX---

---XXXNKRMNDTLKLRENLEKSIKITRKIKN*sresw*skcaiiy**ns*silll*nyf
irf****f**illl**f**i*ti*ckrfn*ssnf**yhhchynnchyyynry*rinyy*w
*r*icky*fk*fflri*rw**rslrd*kitrn**psirkrksinctrtktn*fgl*sfrn
vsr*kvwfrf**sifslfrfkefissn*knd*llg*kllfqsiwynsnlsfn*rtfifyf
pkfiincn*scyqrikinxikl

Frame C:
llvqf*ilnliieenftqpkilecwtnv*tfsli*xxx---

---xxxike*mih*n*ektlknqlklqeklkidqenlgnpnvqlftdeirdqyfyyrttl
ldsdnddsdeyyyyddsdeyeqynakdlidhptsndtttvttttatttttateesiiidg
edefvnidsnssssefedgdedlleikrlqeiddqvlekenqlivqeqkqidlvfkvlem
yqdekfgldfdkvfsvcsdsknlsqaikkmtnyldenyysnqygitqtyllikerlsftf
pnlsltvidraikesk*ix*s
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U11440-1 (Contig-U11440-1Q)
/CSM_Contig/Contig-U11440-1Q.Seq.d
         (904 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U11440-1 (Contig-U11440-1Q) /CSM_Contig/Conti...  1320  0.0
Contig-U09312-1 (Contig-U09312-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U10976-1 (Contig-U10976-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U09496-1 (Contig-U09496-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U05896-1 (Contig-U05896-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U04742-1 (Contig-U04742-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U13758-1 (Contig-U13758-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U12645-1 (Contig-U12645-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U10719-1 (Contig-U10719-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U08275-1 (Contig-U08275-1Q) /CSM_Contig/Conti...    38  0.016

>Contig-U11440-1 (Contig-U11440-1Q) /CSM_Contig/Contig-U11440-1Q.Seq.d
          Length = 904

 Score = 1320 bits (666), Expect = 0.0
 Identities = 683/690 (98%)
 Strand = Plus / Plus

                                                                       
Query: 215 tgatcaagagaatcttggtaatccaaatgtgcaattatttactgatgaaattcgtgatca 274
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 tgatcaagagaatcttggtaatccaaatgtgcaattatttactgatgaaattcgtgatca 274

                                                                       
Query: 275 atacttttattatagaactactttattagattctgataatgatgattctgatgaatatta 334
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 atacttttattatagaactactttattagattctgataatgatgattctgatgaatatta 334

                                                                       
Query: 335 ttattatgatgattctgatgaatatgaacaatataatgcaaaagatttaattgatcatcc 394
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ttattatgatgattctgatgaatatgaacaatataatgcaaaagatttaattgatcatcc 394

                                                                       
Query: 395 aacttctaatgataccaccactgtcactacaacaactgccactactactacaaccgctac 454
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 aacttctaatgataccaccactgtcactacaacaactgccactactactacaaccgctac 454

                                                                       
Query: 455 tgaagaatcaattattattgatggtgaagatgaatttgtaaatattgattcaaatagttc 514
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tgaagaatcaattattattgatggtgaagatgaatttgtaaatattgattcaaatagttc 514

                                                                       
Query: 515 ttcctcagaatttgaagatggtgatgaagatctcttagagattaaaagattacaagaaat 574
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ttcctcagaatttgaagatggtgatgaagatctcttagagattaaaagattacaagaaat 574

                                                                       
Query: 575 tgatgaccaagtattagaaaaagaaaatcaattaattgtacaagaacaaaaacaaattga 634
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 tgatgaccaagtattagaaaaagaaaatcaattaattgtacaagaacaaaaacaaattga 634

                                                                       
Query: 635 tttggtctttaaagttttagaaatgtatcaagatgaaaagtttggtttagattttgataa 694
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 tttggtctttaaagttttagaaatgtatcaagatgaaaagtttggtttagattttgataa 694

                                                                       
Query: 695 agtattttcagtttgttcagattcaaagaatttatctcaagcaattnnnnnnntgactaa 754
           ||||||||||||||||||||||||||||||||||||||||||||||       |||||||
Sbjct: 695 agtattttcagtttgttcagattcaaagaatttatctcaagcaattaaaaaaatgactaa 754

                                                                       
Query: 755 ttacttggatgaaaattattattccaatcaatatggtataactcaaacttatcttttaat 814
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 ttacttggatgaaaattattattccaatcaatatggtataactcaaacttatcttttaat 814

                                                                       
Query: 815 taaagaacgtttatcttttactttcccaaatttatcattaactgtaattgatcgtgctat 874
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 taaagaacgtttatcttttactttcccaaatttatcattaactgtaattgatcgtgctat 874

                                         
Query: 875 caaagaatcaaaataaatcanataaagcta 904
           ||||||||||||||||||||||||||||||
Sbjct: 875 caaagaatcaaaataaatcanataaagcta 904


 Score =  212 bits (107), Expect = 5e-55
 Identities = 107/107 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tattattggtgcaattttagatattgaatcttattatagaagagaattttacacaaccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tattattggtgcaattttagatattgaatcttattatagaagagaattttacacaaccca 60

                                                          
Query: 61  aaattttggagtgttggacaaatgtgtaaaccttttcgttgatttag 107
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aaattttggagtgttggacaaatgtgtaaaccttttcgttgatttag 107


 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 137 aataaaagaatgaatgatacatta 160
           ||||||||||||||||||||||||
Sbjct: 137 aataaaagaatgaatgatacatta 160


>Contig-U09312-1 (Contig-U09312-1Q) /CSM_Contig/Contig-U09312-1Q.Seq.d
          Length = 2696

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 303  gattctgataatgatgattctgatga 328
            ||||||||| ||||||||||||||||
Sbjct: 2294 gattctgatgatgatgattctgatga 2319


 Score = 32.2 bits (16), Expect = 0.99
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                            
Query: 340  atgatgattctgatga 355
            ||||||||||||||||
Sbjct: 2304 atgatgattctgatga 2319


 Score = 32.2 bits (16), Expect = 0.99
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                            
Query: 313  atgatgattctgatga 328
            ||||||||||||||||
Sbjct: 2268 atgatgattctgatga 2283


 Score = 32.2 bits (16), Expect = 0.99
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                            
Query: 340  atgatgattctgatga 355
            ||||||||||||||||
Sbjct: 2268 atgatgattctgatga 2283


>Contig-U10976-1 (Contig-U10976-1Q) /CSM_Contig/Contig-U10976-1Q.Seq.d
          Length = 4198

 Score = 40.1 bits (20), Expect = 0.004
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 590  agaaaaagaaaatcaattaa 609
            ||||||||||||||||||||
Sbjct: 1861 agaaaaagaaaatcaattaa 1880


 Score = 36.2 bits (18), Expect = 0.064
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 591  gaaaaagaaaatcaatta 608
            ||||||||||||||||||
Sbjct: 3724 gaaaaagaaaatcaatta 3741


 Score = 30.2 bits (15), Expect = 3.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                           
Query: 591  gaaaaagaaaatcaa 605
            |||||||||||||||
Sbjct: 2513 gaaaaagaaaatcaa 2527


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 29,127
Number of Sequences: 6905
Number of extensions: 29127
Number of successful extensions: 2933
Number of sequences better than 10.0: 334
length of query: 904
length of database: 5,674,871
effective HSP length: 16
effective length of query: 888
effective length of database: 5,564,391
effective search space: 4941179208
effective search space used: 4941179208
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.25
Homology vs DNA 
Query= Contig-U11440-1 (Contig-U11440-1Q) /CSM_Contig/Contig-U11440-1Q.Seq.d
         (904 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ354121) Dictyostelium discoideum cDNA clone:dda52i13, 3' ...   729   0.0    4
(BJ336060) Dictyostelium discoideum cDNA clone:dda52i13, 5' ...   210   7e-50  1
(AC176120) Strongylocentrotus purpuratus clone R3-3023E23, W...    42   0.002  5
(AC174047) Homo sapiens chromosome 2 clone WI2-2257M9, compl...    54   0.009  1
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    34   0.016  15
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124...    34   0.019  9
(CU041328) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   0.024  2
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    38   0.042  16
(AC116551) Dictyostelium discoideum chromosome 2 map complem...    46   0.052  7
(AM958286) Sparus aurata EST, clone cDN04P0004I16, 5'-end se...    38   0.11   2
(EV523854) JB2_56_G07 Castor seed endosperm Ricinus communis...    50   0.15   1
(EV523048) JB2_48_E07 Castor seed endosperm Ricinus communis...    50   0.15   1
(AC152521) Bos taurus clone CH240-13I6, WORKING DRAFT SEQUEN...    34   0.32   2
(AC167084) Oryctolagus cuniculus clone LB1-308N13, WORKING D...    38   0.34   6
(AL408041) T7 end of clone AV0AA006B12 of library AV0AA from...    38   0.42   2
(AC168612) Strongylocentrotus purpuratus clone R3-3046H17, W...    48   0.58   1
(EI826672) POTFU45TR Solanum tuberosum RHPOTKEY BAC ends Sol...    48   0.58   1
(AM180355) Clostridium difficile 630 complete genome.              48   0.58   1
(EA404723) Sequence 715 from patent US 7319142.                    42   0.79   2
(AC167296) Oryctolagus cuniculus clone LB1-107I22, WORKING D...    38   1.1    6
(AC197720) Zea mays chromosome UNKNOWN clone CH201-24C17; ZM...    34   1.2    2
(CT797470) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   1.2    2
(AP008123) Lotus japonicus genomic DNA, chromosome 4, clone:...    42   1.3    3
(AE017308) Mycoplasma mobile 163K complete genome.                 36   1.5    12
(FG704274) G1144P348FJ19.T0 Anolis carolinensis pooled norma...    36   1.6    2
(FG776620) G1147P355FC21.T0 Anolis carolinensis pooled norma...    36   1.6    2
(AM608068) Entamoeba invadens IP1 GSS, clone inv085d06.p1k.        36   1.6    2
(FG663035) G1142P320FI20.T0 Anolis carolinensis pooled norma...    36   1.6    2
(FG734330) G1145P316FA11.T0 Anolis carolinensis pooled norma...    36   1.6    2
(FG742268) G1145P39FB11.T0 Anolis carolinensis pooled normal...    36   1.6    2
(AM617467) Entamoeba invadens IP1 GSS, clone inv096h06.q1k.        36   1.6    2
(FG663083) G1142P320RI20.T0 Anolis carolinensis pooled norma...    36   1.6    2
(BZ389252) EINDW08TF EI_10_12_KB Entamoeba invadens genomic ...    36   1.6    2
(ER415409) 1095390198757 Global-Ocean-Sampling_GS-34-01-01-1...    40   2.0    2
(BX927382) Zebrafish DNA sequence from clone DKEY-168I13 in ...    46   2.3    1
(AC145929) Gallus gallus BAC clone CH261-31A6 from chromosom...    46   2.3    1
(AL033520) Human DNA sequence from clone RP3-349A12 on chrom...    46   2.3    1
(AC119486) Rattus norvegicus clone CH230-472F15, *** SEQUENC...    46   2.3    1
(AC117287) Rattus norvegicus clone CH230-261O16, *** SEQUENC...    46   2.3    1
(AC069587) Homo sapiens clone RP11-377I5, WORKING DRAFT SEQU...    46   2.3    1
(AC190075) Microcebus murinus clone CH257-397M12, WORKING DR...    46   2.3    1
(ET178631) MUGQ_CH252P384M04T7_CP726_004 CHORI-252 Vervet Mo...    46   2.3    1
(EJ126287) 1092343394753 Global-Ocean-Sampling_GS-27-01-01-1...    46   2.3    1
(ED011847) MUGQ_CH252P095M10T7_CN04_083 CHORI-252 Vervet Mon...    46   2.3    1
(ES842100) UFL_084_33 Cotton fiber 0-10 day post anthesis Go...    46   2.3    1
(CV085872) Mdfrt3079d20.y1 Mdfrt Malus x domestica cDNA clon...    46   2.3    1
(CO119370) GR__Eb022D21.f GR__Eb Gossypium raimondii cDNA cl...    46   2.3    1
(CN193932) rh07h07.y1 Meloidogyne hapla female SMART pGEM Me...    46   2.3    1
(FK093594) XABT144513.b1 Gateway compatible cien cDNA librar...    46   2.3    1
(FG468419) 020213KAKA005719HT (KAKA) Dormant kiwifruit buds ...    46   2.3    1
(FG429707) 010422KABA016258HT (KABA) A. deliciosa petal Acti...    46   2.3    1
(AC166647) Mus musculus chromosome 3 clone RP23-5I9 map 3, *...    38   2.4    6
(CP000102) Methanosphaera stadtmanae DSM 3091, complete genome.    36   2.7    16
(CU694825) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   2.8    4
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...    36   3.2    9
(AF402141) Schizophyllum commune mitochondrial DNA, complete...    32   3.3    6
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    34   3.4    11
(AF467886) Crioceris duodecimpunctata mitochondrion, complet...    36   3.6    5
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    32   4.3    2
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    32   4.4    12
(AC180273) Strongylocentrotus purpuratus clone R3-3123N06, W...    40   4.5    5
(ES328060) CTZ26-A07.x1d-t SHGC-CTZ Ostreococcus lucimarinus...    32   5.7    2
(EK298969) 1095462357271 Global-Ocean-Sampling_GS-31-01-01-1...    32   5.8    2
(CO028773) EST807157 Coccidioides posadasii spherule cDNA li...    34   5.8    2
(CO034683) EST813067 Coccidioides posadasii spherule cDNA li...    34   5.8    2
(CO025833) EST804217 Coccidioides posadasii spherule cDNA li...    34   5.8    2
(BM883260) rc04h07.y1 Meloidogyne hapla egg pAMP1 v1 Meloido...    32   6.0    2
(AC145960) Gallus gallus BAC clone CH261-18H1 from chromosom...    44   6.1    3
(AP006628) Onion yellows phytoplasma OY-M DNA, complete genome.    36   6.4    14
(AC073840) Homo sapiens BAC clone RP11-429O22 from 4, comple...    38   6.5    6
(CP000016) Candidatus Blochmannia pennsylvanicus str. BPEN, ...    34   6.6    13
(EJ142320) 1092343662214 Global-Ocean-Sampling_GS-27-01-01-1...    40   6.8    2
(AC140028) Medicago truncatula clone mth2-7e24, complete seq...    38   7.4    4
(AE002129) Ureaplasma parvum serovar 3 str. ATCC 700970 sect...    40   7.6    3
(B34075) HS-1023-B2-F09-MR.abi CIT Human Genomic Sperm Libra...    36   7.8    2
(EU700660) HIV-1 clone Patient003_Time2_CENTRAL_MEMORY_CLONE...    36   7.8    2
(AY252934) Podopinae sp. WCW-2003 cytochrome oxidase subunit...    36   8.5    2
(AM467754) Vitis vinifera contig VV78X276340.2, whole genome...    42   8.9    2
(CU277891) Zebrafish DNA sequence from clone CH73-331D6 in l...    44   9.1    1
(CT573440) Zebrafish DNA sequence from clone CH211-246E12 in...    44   9.1    1
(CR812928) Zebrafish DNA sequence from clone DKEY-238M17 in ...    44   9.1    1
(CR376726) Zebrafish DNA sequence from clone CH211-196P1 in ...    44   9.1    1
(BX465201) Zebrafish DNA sequence from clone DKEY-15F11 in l...    44   9.1    1
(BX296542) Zebrafish DNA sequence from clone CH211-278C10 in...    44   9.1    1
(AJ720984) Gallus gallus mRNA for hypothetical protein, clon...    44   9.1    1
(AC119847) Mus musculus chromosome 3, clone RP23-46L5, compl...    44   9.1    1
(AC112257) Mus musculus BAC clone RP23-43A18 from 16, comple...    44   9.1    1
(AC226053) Musa balbisiana clone BAC MBP-6L16, complete sequ...    44   9.1    1
(AX489580) Sequence 6880 from Patent WO02053728.                   44   9.1    1
(AC187981) Canis Familiaris chromosome 6, clone XX-463G11, c...    44   9.1    1
(AC135770) Rattus norvegicus clone CH230-109F14, *** SEQUENC...    44   9.1    1
(AC127193) Rattus norvegicus clone CH230-173D14, *** SEQUENC...    44   9.1    1
(CU694458) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    44   9.1    1
(CU633531) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   9.1    1
(AC092514) Papio anubis clone RP41-56L12, WORKING DRAFT SEQU...    44   9.1    1
(CT583649) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   9.1    1
(CT027992) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   9.1    1
(AC218404) Bos taurus clone CH240-284J16, WORKING DRAFT SEQU...    44   9.1    1
(AC212656) Solanum lycopersicum chromosome 7 clone C07SLm012...    44   9.1    1
(AC211055) Solanum lycopersicum chromosome 6 clone C06HBa015...    44   9.1    1

>(BJ354121) Dictyostelium discoideum cDNA clone:dda52i13, 3' end,
           single read.
          Length = 769

 Score =  729 bits (368), Expect(4) = 0.0
 Identities = 368/368 (100%)
 Strand = Plus / Minus


Query: 373 caaaagatttaattgatcatccaacttctaatgataccaccactgtcactacaacaactg 432
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 caaaagatttaattgatcatccaacttctaatgataccaccactgtcactacaacaactg 474


Query: 433 ccactactactacaaccgctactgaagaatcaattattattgatggtgaagatgaatttg 492
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ccactactactacaaccgctactgaagaatcaattattattgatggtgaagatgaatttg 414


Query: 493 taaatattgattcaaatagttcttcctcagaatttgaagatggtgatgaagatctcttag 552
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 taaatattgattcaaatagttcttcctcagaatttgaagatggtgatgaagatctcttag 354


Query: 553 agattaaaagattacaagaaattgatgaccaagtattagaaaaagaaaatcaattaattg 612
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 agattaaaagattacaagaaattgatgaccaagtattagaaaaagaaaatcaattaattg 294


Query: 613 tacaagaacaaaaacaaattgatttggtctttaaagttttagaaatgtatcaagatgaaa 672
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tacaagaacaaaaacaaattgatttggtctttaaagttttagaaatgtatcaagatgaaa 234


Query: 673 agtttggtttagattttgataaagtattttcagtttgttcagattcaaagaatttatctc 732
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 agtttggtttagattttgataaagtattttcagtttgttcagattcaaagaatttatctc 174


Query: 733 aagcaatt 740
           ||||||||
Sbjct: 173 aagcaatt 166

 Score =  305 bits (154), Expect(4) = 0.0
 Identities = 157/157 (100%)
 Strand = Plus / Minus


Query: 748 tgactaattacttggatgaaaattattattccaatcaatatggtataactcaaacttatc 807
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 tgactaattacttggatgaaaattattattccaatcaatatggtataactcaaacttatc 99


Query: 808 ttttaattaaagaacgtttatcttttactttcccaaatttatcattaactgtaattgatc 867
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98  ttttaattaaagaacgtttatcttttactttcccaaatttatcattaactgtaattgatc 39


Query: 868 gtgctatcaaagaatcaaaataaatcanataaagcta 904
           |||||||||||||||||||||||||||||||||||||
Sbjct: 38  gtgctatcaaagaatcaaaataaatcanataaagcta 2

 Score =  161 bits (81), Expect(4) = 0.0
 Identities = 81/81 (100%)
 Strand = Plus / Minus


Query: 216 gatcaagagaatcttggtaatccaaatgtgcaattatttactgatgaaattcgtgatcaa 275
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 gatcaagagaatcttggtaatccaaatgtgcaattatttactgatgaaattcgtgatcaa 631


Query: 276 tacttttattatagaactact 296
           |||||||||||||||||||||
Sbjct: 630 tacttttattatagaactact 610

 Score = 40.1 bits (20), Expect(4) = 0.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus


Query: 137 aataaaagaatgaatgatac 156
           ||||||||||||||||||||
Sbjct: 769 aataaaagaatgaatgatac 750

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 994,251,586
Number of extensions: 65938798
Number of successful extensions: 5518198
Number of sequences better than 10.0: 174
Length of query: 904
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 880
Effective length of database: 97,308,875,965
Effective search space: 85631810849200
Effective search space used: 85631810849200
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.30
Homology vs Protein 
Query= Contig-U11440-1 (Contig-U11440-1Q) /CSM_Contig/Contig-U11440-1Q.Seq.d
         (904 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000568_834(CP000568|pid:none) Clostridium thermocellum ATCC 27...    37   1.2
CP000934_39(CP000934|pid:none) Cellvibrio japonicus Ueda107, com...    36   2.0
AE000657_451(AE000657|pid:none) Aquifex aeolicus VF5, complete g...    35   2.6
CP001185_1462(CP001185|pid:none) Thermosipho africanus TCF52B, c...    35   4.5
CP000716_1312(CP000716|pid:none) Thermosipho melanesiensis BI429...    34   7.6
(O97237) RecName: Full=GRIP and coiled-coil domain-containing pr...    33   9.9
AB062738_1(AB062738|pid:none) Arabidopsis thaliana MKRP1 mRNA fo...    33   9.9

>CP000568_834(CP000568|pid:none) Clostridium thermocellum ATCC
           27405, complete genome.
          Length = 409

 Score = 36.6 bits (83), Expect = 1.2
 Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 8/113 (7%)
 Frame = +3

Query: 567 QEIDDQVLEKENQLIVQEQKQIDLVFKVLEMYQDEKF-----GLDFDKVFSVCSDSK--- 722
           + I+++++E++      E  ++DL+ K L+ Y+DEK      G D +K+    +  K
Sbjct: 43  KSIEEKIMEEQI-----EADEVDLLEKELKKYKDEKIDEILPGYDPEKIIRDVAKGKLNF 97

Query: 723 NLSQAIKKMTNYLDENYYSNQYGITQTYLLIKERLSFTFPNLSLTVIDRAIKE 881
           NL   I K+  YL E  Y N   + +  +L+   L     NL  + +++ + E
Sbjct: 98  NLPDIINKILTYLFEEIYLNMGILVKLMVLV--ALCAILNNLQSSFLNKGVGE 148

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 902,693,212
Number of extensions: 16063906
Number of successful extensions: 33041
Number of sequences better than 10.0: 7
Number of HSP's gapped: 33028
Number of HSP's successfully gapped: 7
Length of query: 301
Length of database: 1,040,966,779
Length adjustment: 128
Effective length of query: 173
Effective length of database: 630,818,299
Effective search space: 109131565727
Effective search space used: 109131565727
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.75  gvh: 0.44  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: endoplasmic reticulum
	  4.0 %: peroxisomal

>> prediction for Contig-U11440-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 1
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0