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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U11437-1
Contig ID Contig-U11437-1
Contig update 2002.12.18
Contig sequence 
>Contig-U11437-1 (Contig-U11437-1Q) /CSM_Contig/Contig-U11437-1Q.Seq.d
ATGAAATCTTTAATGATAAATCTAATATCATTTCAAAATTATCAGAACTT
TATCCAAAATTAATTGAAATGTATAAAAAAGTACAAACAGACCTTATTAA
ACCACAATCAGATTCAAATAGTAATAAATTAGAGGTGTTTGAAGAATCTT
CAACCCAATCCATCAGTAGTAGAGAAATCATTTCAAAGACTGATATCTTT
ACCACTAAAAAAGTATCAAAAAATGGTACTTTTGAAGCTAAACTCAAACT
TGAAGGTGTTGAAGGTAATCAATTAAAGACTTTCCTCTCAAGTGGACCAA
TCCAAAGAAAAGCAATAGCTTCAACTTCCAAAGGTTTATTGGCAATTGCT
GAAGGTGATTCTGTTTCATTGTTTAATTCTTCAAAGATTTTAGATGATGA
TGCACAATTGGATAAACATTCATTTAGCAAGGCATTATCAAAGAGTTCCG
TAGCCTATCCAATCGTTAGTATGGTATTCAATCCACTCAATGAAAGATTC
CTTGCAGTTGTTGGTTTCAAAGAAGTAAAGATCCTCACTATCAATCAAAA
GGATGAAATTGTCGATCAATTGGTAATCGATTTATCTTTGGATGCTTTAG
GTGAAACTATTTATATTATNNNNNNNNN----------GCTAAAAATAAA
GATTCCCTTGGTTTCAATGATTCAGATGATTCCGATGATGAATTCCCAAC
TGTAGATGAAAATGTTACAAGTTCTGGTTTATCCACAAGTGCAGGTGGTA
GTGGTGGCGGTGTTGCTGGCACAAATGATTCAACTGCTGATAAACATACA
CCATTAGAAATTGTTATACTTCACTGCTTTAATTCTTTGAAAATTCTATT
TCTCAAATCATGTAGCCAATGATGACAGTCAAAAATTCATTGAACTTAAA
GAGAAAACTTTATCAATTCTTCCATCAATGATTACAGATTCACAATTATC
TTTTGTTAGATCATCTATTAAGAAATTGTTAAAGATTCTTTCAACCAATA
GTGAACATTATCAAACATTGAAACATAGTATTCAATTAAAATATGCAAGT
CAAACAGTTTCATCAATCTTATCAAATAGTGGTGGTACAATCCCAAACTC
TGCTGATCTTGAAAAATTGGATTATTTAGTTGCAGCTTTGAAAAAGATTT
CATCATCAAATCCAAATAATTTAGAGAAATATTTATTCAAAGATCATCCA
AACTTTTTATCTGATCTTTTAACAATCTATCGTAATACAACCTCTCCATC
CTCTAGTAAAGGTAAATCNTCATCAGCATCAGCATCATCNTCATCANCAA
CANCAACAGCAACATCTNCNTTACCATCCNATACCCAAAGTGGTAGCAAT
AATGGAGCAGNCTCNTNAAAANAAAAAAAAAAGC
Gap gap included
Contig length 1374
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 1219222
End point 1217901
Strand (PLUS/MINUS) MINUS
Number of clones 2
Number of EST 3
Link to clone list U11437
List of clone(s) 

est1=AHK408F,1,619
est2=VHE121F,620,1230
est3=AHK408Z,748,1366
Translated Amino Acid sequence 
EIFNDKSNIISKLSELYPKLIEMYKKVQTDLIKPQSDSNSNKLEVFEESSTQSISSREII
SKTDIFTTKKVSKNGTFEAKLKLEGVEGNQLKTFLSSGPIQRKAIASTSKGLLAIAEGDS
VSLFNSSKILDDDAQLDKHSFSKALSKSSVAYPIVSMVFNPLNERFLAVVGFKEVKILTI
NQKDEIVDQLVIDLSLDALGETIYIXXX---

---AKNKDSLGFNDSDDSDDEFPTVDENVTSSGLSTSAGGSGGGVAGTNDSTADKHTPLE
IVILHCFNSLKILFLKSCSQ**qskih*t*renfinssindyrftiifc*iiy*eivkds
fnq**tlsniet*ysikicksnsfinlik*wwynpklc*s*kiglfscsfekdfiiksk*
freifiqrssklfi*sfnnls*ynlsil**r*ixisisiixixnxnsnixxtixypkw*q
*wsxlxkxkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
mkslminlisfqnyqnfiqn*lkcikkykqtllnhnqiqivin*rclknlqpnpsvveks
fqrlislplkkyqkmvllklnsnlkvlkvin*rlssqvdqskekq*lqlpkvywqllkvi
lfhclilqrf*mmmhnwinihlarhyqrvp*piqslvwysihsmkdslqllvskk*rssl
sikrmklsinw*siylwml*vklfilxxx---

---AKNKDSLGFNDSDDSDDEFPTVDENVTSSGLSTSAGGSGGGVAGTNDSTADKHTPLE
IVILHCFNSLKILFLKSCSQ**qskih*t*renfinssindyrftiifc*iiy*eivkds
fnq**tlsniet*ysikicksnsfinlik*wwynpklc*s*kiglfscsfekdfiiksk*
freifiqrssklfi*sfnnls*ynlsil**r*ixisisiixixnxnsnixxtixypkw*q
*wsxlxkxkkk

Frame B:
*nl***i*yhfkiirtlskin*nv*kstnrpy*ttirfk***irgv*rifnpihq**rnh
fkd*ylyh*ksikkwyf*s*tqt*rc*r*sikdfplkwtnpkksnsfnfqrfignc*r*f
cfiv*ffkdfr**ctig*tfi*qgiikefrslsnr*ygiqstq*kipcscwfqrskdphy
qskg*ncrsignrfifgcfr*nylyyxxx---

---lkikiplvsmiqmipmmnsql*mkmlqvlvypqvqvvvvavllaqmiqllinihh*k
llyftalil*kfyfsnhvanddsqkfielkektlsilpsmitdsqlsfvrssikkllkil
stnsehyqtlkhsiqlkyasqtvssilsnsggtipnsadlekldylvaalkkisssnpnn
lekylfkdhpnflsdlltiyrnttspssskgksssasassssxtxtatsxlpsxtqsgsn
ngaxsxkxkkk

Frame C:
EIFNDKSNIISKLSELYPKLIEMYKKVQTDLIKPQSDSNSNKLEVFEESSTQSISSREII
SKTDIFTTKKVSKNGTFEAKLKLEGVEGNQLKTFLSSGPIQRKAIASTSKGLLAIAEGDS
VSLFNSSKILDDDAQLDKHSFSKALSKSSVAYPIVSMVFNPLNERFLAVVGFKEVKILTI
NQKDEIVDQLVIDLSLDALGETIYIXXX---

---*k*rfpwfq*fr*fr**ipncr*kcykfwfihkcrw*wwrccwhk*fnc**tytirn
cytsll*ffensisqim*pmmtvknslnlkrklyqffhq*lqihnyllldhllrnc*rff
qpivniikh*nivfn*nmqvkqfhqsyqivvvqsqtllilknwii*lql*krfhhqiqii
*rniyskiiqtfylif*qsiviqplhplvkvnxhqhqhhxhxqxqqqhlxyhpipkvvai
meqxxxxkkks
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U11437-1 (Contig-U11437-1Q)
/CSM_Contig/Contig-U11437-1Q.Seq.d
         (1384 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U11437-1 (Contig-U11437-1Q) /CSM_Contig/Conti...  1392  0.0
Contig-U13613-1 (Contig-U13613-1Q) /CSM_Contig/Conti...    52  2e-06
Contig-U07029-1 (Contig-U07029-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U12532-1 (Contig-U12532-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U12559-1 (Contig-U12559-1Q) /CSM_Contig/Conti...    38  0.025
Contig-U12535-1 (Contig-U12535-1Q) /CSM_Contig/Conti...    38  0.025
Contig-U12056-1 (Contig-U12056-1Q) /CSM_Contig/Conti...    38  0.025
Contig-U08180-1 (Contig-U08180-1Q) /CSM_Contig/Conti...    38  0.025
Contig-U14511-1 (Contig-U14511-1Q) /CSM_Contig/Conti...    36  0.098

>Contig-U11437-1 (Contig-U11437-1Q) /CSM_Contig/Contig-U11437-1Q.Seq.d
          Length = 1384

 Score = 1392 bits (702), Expect = 0.0
 Identities = 726/726 (100%)
 Strand = Plus / Plus

                                                                        
Query: 639  gctaaaaataaagattcccttggtttcaatgattcagatgattccgatgatgaattccca 698
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639  gctaaaaataaagattcccttggtttcaatgattcagatgattccgatgatgaattccca 698

                                                                        
Query: 699  actgtagatgaaaatgttacaagttctggtttatccacaagtgcaggtggtagtggtggc 758
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699  actgtagatgaaaatgttacaagttctggtttatccacaagtgcaggtggtagtggtggc 758

                                                                        
Query: 759  ggtgttgctggcacaaatgattcaactgctgataaacatacaccattagaaattgttata 818
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759  ggtgttgctggcacaaatgattcaactgctgataaacatacaccattagaaattgttata 818

                                                                        
Query: 819  cttcactgctttaattctttgaaaattctatttctcaaatcatgtagccaatgatgacag 878
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819  cttcactgctttaattctttgaaaattctatttctcaaatcatgtagccaatgatgacag 878

                                                                        
Query: 879  tcaaaaattcattgaacttaaagagaaaactttatcaattcttccatcaatgattacaga 938
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879  tcaaaaattcattgaacttaaagagaaaactttatcaattcttccatcaatgattacaga 938

                                                                        
Query: 939  ttcacaattatcttttgttagatcatctattaagaaattgttaaagattctttcaaccaa 998
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 939  ttcacaattatcttttgttagatcatctattaagaaattgttaaagattctttcaaccaa 998

                                                                        
Query: 999  tagtgaacattatcaaacattgaaacatagtattcaattaaaatatgcaagtcaaacagt 1058
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 999  tagtgaacattatcaaacattgaaacatagtattcaattaaaatatgcaagtcaaacagt 1058

                                                                        
Query: 1059 ttcatcaatcttatcaaatagtggtggtacaatcccaaactctgctgatcttgaaaaatt 1118
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1059 ttcatcaatcttatcaaatagtggtggtacaatcccaaactctgctgatcttgaaaaatt 1118

                                                                        
Query: 1119 ggattatttagttgcagctttgaaaaagatttcatcatcaaatccaaataatttagagaa 1178
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1119 ggattatttagttgcagctttgaaaaagatttcatcatcaaatccaaataatttagagaa 1178

                                                                        
Query: 1179 atatttattcaaagatcatccaaactttttatctgatcttttaacaatctatcgtaatac 1238
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1179 atatttattcaaagatcatccaaactttttatctgatcttttaacaatctatcgtaatac 1238

                                                                        
Query: 1239 aacctctccatcctctagtaaaggtaaatcntcatcagcatcagcatcatcntcatcanc 1298
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1239 aacctctccatcctctagtaaaggtaaatcntcatcagcatcagcatcatcntcatcanc 1298

                                                                        
Query: 1299 aacancaacagcaacatctncnttaccatccnatacccaaagtggtagcaataatggagc 1358
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1299 aacancaacagcaacatctncnttaccatccnatacccaaagtggtagcaataatggagc 1358

                  
Query: 1359 agnctc 1364
            ||||||
Sbjct: 1359 agnctc 1364


 Score = 1227 bits (619), Expect = 0.0
 Identities = 619/619 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaaatctttaatgataaatctaatatcatttcaaaattatcagaactttatccaaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atgaaatctttaatgataaatctaatatcatttcaaaattatcagaactttatccaaaat 60

                                                                       
Query: 61  taattgaaatgtataaaaaagtacaaacagaccttattaaaccacaatcagattcaaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  taattgaaatgtataaaaaagtacaaacagaccttattaaaccacaatcagattcaaata 120

                                                                       
Query: 121 gtaataaattagaggtgtttgaagaatcttcaacccaatccatcagtagtagagaaatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtaataaattagaggtgtttgaagaatcttcaacccaatccatcagtagtagagaaatca 180

                                                                       
Query: 181 tttcaaagactgatatctttaccactaaaaaagtatcaaaaaatggtacttttgaagcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tttcaaagactgatatctttaccactaaaaaagtatcaaaaaatggtacttttgaagcta 240

                                                                       
Query: 241 aactcaaacttgaaggtgttgaaggtaatcaattaaagactttcctctcaagtggaccaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aactcaaacttgaaggtgttgaaggtaatcaattaaagactttcctctcaagtggaccaa 300

                                                                       
Query: 301 tccaaagaaaagcaatagcttcaacttccaaaggtttattggcaattgctgaaggtgatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tccaaagaaaagcaatagcttcaacttccaaaggtttattggcaattgctgaaggtgatt 360

                                                                       
Query: 361 ctgtttcattgtttaattcttcaaagattttagatgatgatgcacaattggataaacatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ctgtttcattgtttaattcttcaaagattttagatgatgatgcacaattggataaacatt 420

                                                                       
Query: 421 catttagcaaggcattatcaaagagttccgtagcctatccaatcgttagtatggtattca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 catttagcaaggcattatcaaagagttccgtagcctatccaatcgttagtatggtattca 480

                                                                       
Query: 481 atccactcaatgaaagattccttgcagttgttggtttcaaagaagtaaagatcctcacta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 atccactcaatgaaagattccttgcagttgttggtttcaaagaagtaaagatcctcacta 540

                                                                       
Query: 541 tcaatcaaaaggatgaaattgtcgatcaattggtaatcgatttatctttggatgctttag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tcaatcaaaaggatgaaattgtcgatcaattggtaatcgatttatctttggatgctttag 600

                              
Query: 601 gtgaaactatttatattat 619
           |||||||||||||||||||
Sbjct: 601 gtgaaactatttatattat 619


>Contig-U13613-1 (Contig-U13613-1Q) /CSM_Contig/Contig-U13613-1Q.Seq.d
          Length = 268

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                            
Query: 1270 tcatcagcatcagcatcatcntcatcancaac 1301
            |||||||||||||||||||| |||||| ||||
Sbjct: 227  tcatcagcatcagcatcatcatcatcatcaac 258


>Contig-U07029-1 (Contig-U07029-1Q) /CSM_Contig/Contig-U07029-1Q.Seq.d
          Length = 834

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 667 atgattcagatgattccgatgatgaa 692
           |||||||||||||||| |||||||||
Sbjct: 502 atgattcagatgattcagatgatgaa 527


 Score = 32.2 bits (16), Expect = 1.5
 Identities = 22/24 (91%)
 Strand = Plus / Plus

                                   
Query: 666 aatgattcagatgattccgatgat 689
           |||||||||||||| || ||||||
Sbjct: 483 aatgattcagatgactctgatgat 506


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 20,664
Number of Sequences: 6905
Number of extensions: 20664
Number of successful extensions: 2461
Number of sequences better than 10.0: 274
length of query: 1384
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1368
effective length of database: 5,564,391
effective search space: 7612086888
effective search space used: 7612086888
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.25
Homology vs DNA 
Query= Contig-U11437-1 (Contig-U11437-1Q) /CSM_Contig/Contig-U11437-1Q.Seq.d
         (1384 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ335694) Dictyostelium discoideum cDNA clone:dda51p02, 5' ...  1227   0.0    1
(BJ420381) Dictyostelium discoideum cDNA clone:ddv39i05, 5' ...   801   0.0    2
(BJ353722) Dictyostelium discoideum cDNA clone:dda51p02, 3' ...   775   0.0    4
(AC158555) Mus musculus chromosome 3, clone RP23-14B10, comp...    60   2e-04  1
(AC102418) Mus musculus chromosome 3, clone RP24-499L10, com...    60   2e-04  1
(AC127111) Rattus norvegicus clone CH230-7N14, WORKING DRAFT...    58   0.001  1
(AC112421) Rattus norvegicus clone CH230-362G7, WORKING DRAF...    58   0.001  1
(AC107429) Rattus norvegicus clone CH230-206H12, WORKING DRA...    58   0.001  1
(AC107244) Rattus norvegicus clone CH230-145K21, *** SEQUENC...    58   0.001  1
(AC095668) Rattus norvegicus clone CH230-8O17, *** SEQUENCIN...    58   0.001  1
(AC181961) Strongylocentrotus purpuratus clone R3-1002H24, W...    58   0.001  1
(AC180814) Strongylocentrotus purpuratus clone R3-3071M24, W...    58   0.001  1
(AC177759) Strongylocentrotus purpuratus clone R3-1005K13, W...    58   0.001  1
(AL669816) Mouse DNA sequence from clone RP23-266C4 on chrom...    56   0.004  1
(AG979358) Drosophila simulans DNA, clone: DSM1-024C03.R.fa,...    56   0.004  1
(DY892404) CeleSEQ10625 Cunninghamella elegans pBluescript (...    54   0.006  2
(CU861486) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    54   0.015  1
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    36   0.018  14
(DY893027) CeleSEQ12189 Cunninghamella elegans pBluescript (...    38   0.046  2
(AP006501) Cyanidioschyzon merolae DNA, chromosome 19, compl...    52   0.057  1
(AL161742) Human DNA sequence from clone RP4-597J3 on chromo...    52   0.057  1
(AC093167) Homo sapiens Xp BAC RP11-593P4 (Roswell Park Canc...    52   0.057  1
(AC027520) Homo sapiens chromosome 1 clone RP11-301D3 map 1,...    52   0.057  1
(AC025935) Homo sapiens clone RP11-593P4, WORKING DRAFT SEQU...    52   0.057  1
(AL356914) Human DNA sequence *** SEQUENCING IN PROGRESS ***...    52   0.057  1
(AC209029) Zea mays chromosome 4 clone CH201-517O23; ZMMBBc0...    52   0.057  1
(AC180396) Strongylocentrotus purpuratus clone R3-3106N18, W...    52   0.057  1
(AC179939) Strongylocentrotus purpuratus clone R3-22D04, WOR...    52   0.057  1
(AC025544) Homo sapiens chromosome 1 clone RP11-414D13, WORK...    52   0.057  1
(ET110552) QM0AAC19AF12RM2 CCH3 Citrus clementina genomic cl...    52   0.057  1
(DY299767) IC0AAA99BC02RM1 CitNFL Citrus clementina cDNA 5',...    52   0.057  1
(DY295916) IC0AAA89CC08RM1 CitNFL Citrus clementina cDNA 5',...    52   0.057  1
(DY293291) IC0AAA82BF09RM1 CitNFL Citrus clementina cDNA 5',...    52   0.057  1
(DY275546) IC0AAA39CG08RM1 CitNFL Citrus clementina cDNA 5',...    52   0.057  1
(DY272702) IC0AAA31DE09RM1 CitNFL Citrus clementina cDNA 5',...    52   0.057  1
(DY268668) IC0AAA24DD02RM2 CitNFL Citrus clementina cDNA 5',...    52   0.057  1
(DY264983) IC0AAA16AC03RM1 CitNFL Citrus clementina cDNA 5',...    52   0.057  1
(DR179946) RTMNUT1_25_B12.g1_A029 Roots minus micronutrients...    52   0.057  1
(CX290915) C03001F11Rv OF1 Citrus clementina cDNA clone C030...    52   0.057  1
(BJ439065) Dictyostelium discoideum cDNA clone:ddv39g11, 3' ...    52   0.057  1
(EY673945) CS00-C1-102-003-A05-CT.F Sweet orange leaf, infec...    52   0.057  1
(EY668876) CS00-C1-102-068-B03-CT.F Sweet orange leaf, infec...    52   0.057  1
(EV435791) 37497_1032 Quinqueloculina sp. cDNA library Quinq...    52   0.057  1
(AC179908) Strongylocentrotus purpuratus clone R3-1003I5, WO...    42   0.060  7
(CW921622) EDCAN62TF A. castellanii, 6-8 kb library from tot...    34   0.17   2
(DV616880) EST1219876 Glossina morsitans morsitans Fat body ...    34   0.17   2
(AG958522) Drosophila sechellia DNA, clone: DSE1-015F18.F.fa...    50   0.17   2
(BX548737) Glossina morsitans morsitans (Tseatse fly) EST fr...    34   0.18   2
(AC177524) Strongylocentrotus purpuratus clone R3-1027F02, W...    46   0.18   3
(AE015927) Clostridium tetani E88, complete genome.                36   0.19   22
(AF513926) Mus musculus strain C57BL/6 immunoglobulin kappa ...    50   0.23   1
(AC156398) Mus musculus 6 BAC RP24-279F16 (Roswell Park Canc...    50   0.23   1
(AC153612) Mus musculus 6 BAC RP23-435I4 (Roswell Park Cance...    50   0.23   1
(AC104867) Mus musculus chromosome 18, clone RP24-320L19, co...    50   0.23   1
(AC068909) Mus musculus BAC Clone 407f20 RPCI-23, complete s...    50   0.23   1
(EF140892) Panax ginseng clone PG29 microsatellite sequence.       50   0.23   1
(AC193018) Phycomyces blakesleeanus clone JGIBOUU-5M23, comp...    50   0.23   1
(BD074755) Neisseria lactoferrin-binding protein.                  50   0.23   1
(A98968) Sequence 1 from Patent WO9909176.                         50   0.23   1
(AR942469) Sequence 1 from patent US 7105316.                      50   0.23   1
(AY301009) Pogonomyrmex occidentalis microsatellite Po08 seq...    50   0.23   1
(AC150374) Colobus guereza clone CH272-220M2, WORKING DRAFT ...    50   0.23   1
(AC141952) Rattus norvegicus clone CH230-398F7, WORKING DRAF...    50   0.23   1
(AC141330) Rattus norvegicus clone CH230-281F14, WORKING DRA...    50   0.23   1
(AC139960) Rattus norvegicus clone CH230-143J21, WORKING DRA...    50   0.23   1
(AC132794) Rattus norvegicus clone CH230-12A22, *** SEQUENCI...    50   0.23   1
(AC131862) Rattus norvegicus clone CH230-10F20, *** SEQUENCI...    50   0.23   1
(AC126503) Rattus norvegicus clone CH230-213M2, *** SEQUENCI...    50   0.23   1
(AC120268) Rattus norvegicus clone CH230-468H3, WORKING DRAF...    50   0.23   1
(AC119516) Rattus norvegicus clone CH230-267L22, WORKING DRA...    50   0.23   1
(AC116223) Rattus norvegicus clone CH230-276N14, *** SEQUENC...    50   0.23   1
(AC110646) Rattus norvegicus clone CH230-323G13, *** SEQUENC...    50   0.23   1
(AC109003) Rattus norvegicus clone CH230-266P19, WORKING DRA...    50   0.23   1
(AC106141) Rattus norvegicus clone CH230-229F12, *** SEQUENC...    50   0.23   1
(AC099233) Rattus norvegicus clone CH230-201I8, WORKING DRAF...    50   0.23   1
(AC099116) Rattus norvegicus clone CH230-170L23, *** SEQUENC...    50   0.23   1
(AY657028) Mus musculus chromosome 6 clone GA_x54KRFPKN04:12...    50   0.23   1
(AC201359) Strongylocentrotus purpuratus clone R3-17B18, WOR...    50   0.23   1
(AC181749) Strongylocentrotus purpuratus clone R3-1036P18, W...    50   0.23   1
(AC178902) Strongylocentrotus purpuratus clone R3-3114N15, W...    50   0.23   1
(AC178873) Strongylocentrotus purpuratus clone R3-27C18, WOR...    50   0.23   1
(AC178360) Strongylocentrotus purpuratus clone R3-3105P09, W...    50   0.23   1
(AC178325) Strongylocentrotus purpuratus clone R3-3101O07, W...    50   0.23   1
(AC176909) Strongylocentrotus purpuratus clone R3-1104M4, WO...    50   0.23   1
(BH063493) RPCI-24-327F9.TV RPCI-24 Mus musculus genomic clo...    50   0.23   1
(EI189257) DW__Ba0021A23.f DW__Ba Drosophila willistoni geno...    50   0.23   1
(DX992979) CHORI103-15G15.TJ.1 CHORI103 Schistosoma mansoni ...    50   0.23   1
(DX992978) CHORI103-15G15.TJ CHORI103 Schistosoma mansoni ge...    50   0.23   1
(DH496125) Monosiga ovata DNA, fosmid clone: MOF-060J21, gen...    50   0.23   1
(EC690989) JLE00003210 Jakoba libera Company (STANDARD) Jako...    50   0.23   1
(EC311521) OVARYF088535L18 POSSUM_01-POSSUM-C-OVARY-2KB Tric...    50   0.23   1
(CA784744) sat88e03.y1 Gm-c1062 Glycine max cDNA clone SOYBE...    50   0.23   1
(X69214) N.meningitidis iroA gene for iron-regulated OMP A.        50   0.23   1
(AM421808) Neisseria meningitidis serogroup C FAM18 complete...    50   0.23   1
(AF049349) Neisseria meningitidis lactoferrin binding protei...    50   0.23   1
(AF022781) Neisseria meningitidis lactoferrin binding protei...    50   0.23   1
(AC173378) Strongylocentrotus purpuratus clone R3-3001G24, W...    48   0.57   3
(EC849429) HAE00002983 Home-made, regular (lib1_ha) Histiona...    38   0.67   2
(BV678480) MSM1448 Striped Bass Microsatellite Repeat Enrich...    48   0.90   1
(BV678479) MSM1447 Striped Bass Microsatellite Repeat Enrich...    48   0.90   1

>(BJ335694) Dictyostelium discoideum cDNA clone:dda51p02, 5' end,
           single read.
          Length = 619

 Score = 1227 bits (619), Expect = 0.0
 Identities = 619/619 (100%)
 Strand = Plus / Plus


Query: 1   atgaaatctttaatgataaatctaatatcatttcaaaattatcagaactttatccaaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atgaaatctttaatgataaatctaatatcatttcaaaattatcagaactttatccaaaat 60


Query: 61  taattgaaatgtataaaaaagtacaaacagaccttattaaaccacaatcagattcaaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  taattgaaatgtataaaaaagtacaaacagaccttattaaaccacaatcagattcaaata 120


Query: 121 gtaataaattagaggtgtttgaagaatcttcaacccaatccatcagtagtagagaaatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtaataaattagaggtgtttgaagaatcttcaacccaatccatcagtagtagagaaatca 180


Query: 181 tttcaaagactgatatctttaccactaaaaaagtatcaaaaaatggtacttttgaagcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tttcaaagactgatatctttaccactaaaaaagtatcaaaaaatggtacttttgaagcta 240


Query: 241 aactcaaacttgaaggtgttgaaggtaatcaattaaagactttcctctcaagtggaccaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aactcaaacttgaaggtgttgaaggtaatcaattaaagactttcctctcaagtggaccaa 300


Query: 301 tccaaagaaaagcaatagcttcaacttccaaaggtttattggcaattgctgaaggtgatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tccaaagaaaagcaatagcttcaacttccaaaggtttattggcaattgctgaaggtgatt 360


Query: 361 ctgtttcattgtttaattcttcaaagattttagatgatgatgcacaattggataaacatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ctgtttcattgtttaattcttcaaagattttagatgatgatgcacaattggataaacatt 420


Query: 421 catttagcaaggcattatcaaagagttccgtagcctatccaatcgttagtatggtattca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 catttagcaaggcattatcaaagagttccgtagcctatccaatcgttagtatggtattca 480


Query: 481 atccactcaatgaaagattccttgcagttgttggtttcaaagaagtaaagatcctcacta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 atccactcaatgaaagattccttgcagttgttggtttcaaagaagtaaagatcctcacta 540


Query: 541 tcaatcaaaaggatgaaattgtcgatcaattggtaatcgatttatctttggatgctttag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tcaatcaaaaggatgaaattgtcgatcaattggtaatcgatttatctttggatgctttag 600


Query: 601 gtgaaactatttatattat 619
           |||||||||||||||||||
Sbjct: 601 gtgaaactatttatattat 619

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,664,275,565
Number of extensions: 99627180
Number of successful extensions: 8152200
Number of sequences better than 10.0: 287
Length of query: 1384
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1360
Effective length of database: 97,308,875,965
Effective search space: 132340071312400
Effective search space used: 132340071312400
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.30
Homology vs Protein 
Query= Contig-U11437-1 (Contig-U11437-1Q) /CSM_Contig/Contig-U11437-1Q.Seq.d
         (1384 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ415922_13(DQ415922|pid:none) Cleome spinosa clone BAC Cs1, com...    86   2e-15
CR954203_339(CR954203|pid:none) Ostreococcus tauri strain OTTH05...    65   6e-09
CP000583_337(CP000583|pid:none) Ostreococcus lucimarinus CCE9901...    60   2e-07
AF096896_1(AF096896|pid:none) Drosophila melanogaster pushover (...    55   6e-06
(Q2TL32) RecName: Full=E3 ubiquitin-protein ligase UBR4;        ...    49   3e-04
AY850927_1(AY850927|pid:none) Rattus norvegicus ZUBR1 mRNA, comp...    49   3e-04
AF348492_1(AF348492|pid:none) Homo sapiens p600 mRNA, complete c...    49   6e-04
AB037728_1(AB037728|pid:none) Homo sapiens mRNA for KIAA1307 pro...    49   6e-04
AL137127_7(AL137127|pid:none) Human DNA sequence from clone RP5-...    49   6e-04
AL137127_6(AL137127|pid:none) Human DNA sequence from clone RP5-...    49   6e-04
AL807833_3(AL807833|pid:none) Mouse DNA sequence from clone RP23...    47   0.002
(Q80Y11) RecName: Full=E3 ubiquitin-protein ligase UBR4;        ...    47   0.002
AC151523_5(AC151523|pid:none) Medicago truncatula chromosome 7 c...    39   0.58
FM992689_880(FM992689|pid:none) Candida dubliniensis CD36 chromo...    37   1.3
CP001279_1596(CP001279|pid:none) Nautilia profundicola AmH, comp...    37   1.3
CP000955_39(CP000955|pid:none) Synechococcus sp. PCC 7002 plasmi...    37   1.7
T19010(T19010) hypothetical protein C06C6.6 - Caenorhabditis ele...    37   1.7
CP000961_2338(CP000961|pid:none) Shewanella woodyi ATCC 51908, c...    37   2.2
(P40457) RecName: Full=Protein MLP2; AltName: Full=Myosin-like p...    36   2.9
AM999887_1347(AM999887|pid:none) Wolbachia endosymbiont of Culex...    36   3.7
AP009390_31(AP009390|pid:none) Enterococcus phage phiEF24C DNA, ...    35   6.4
AM285302_67(AM285302|pid:none) Spiroplasma citri GII3-3X chromos...    35   6.4
(Q824B2) RecName: Full=Chaperone protein dnaK; AltName: Full=Hea...    35   6.4

>DQ415922_13(DQ415922|pid:none) Cleome spinosa clone BAC Cs1, complete
            sequence.
          Length = 5091

 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 45/139 (32%), Positives = 83/139 (59%), Gaps = 4/139 (2%)
 Frame = +3

Query: 189  TDIFTTKKVSKNGTFEAKLKLEGVEGNQLKTFLSSGPIQRKAIASTSKGLLAIAEGDSVS 368
            TD+   KK  K+G+ + K+K +      LK+ ++SG + +  ++ + +G LA+ EGD VS
Sbjct: 1769 TDLLQLKKAYKSGSLDLKIKADYANAKDLKSHIASGSLVKSLLSVSVRGRLAVGEGDKVS 1828

Query: 369  LFNSSKILDD----DAQLDKHSFSKALSKSSVAYPIVSMVFNPLNERFLAVVGFKEVKIL 536
            +F+  +++          DK +  K LS++ V + IV + FN + E +LAV G ++ +IL
Sbjct: 1829 IFDVGQLVGQATIAPINADKANV-KPLSRNIVRFEIVHLSFNSVVESYLAVAGLEDCQIL 1887

Query: 537  TINQKDEIVDQLVIDLSLD 593
            T+N + E+ D+L ++L L+
Sbjct: 1888 TLNHRGEVTDRLAVELVLE 1906

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,872,553,488
Number of extensions: 34029118
Number of successful extensions: 95197
Number of sequences better than 10.0: 23
Number of HSP's gapped: 94308
Number of HSP's successfully gapped: 23
Length of query: 461
Length of database: 1,040,966,779
Length adjustment: 132
Effective length of query: 329
Effective length of database: 618,001,159
Effective search space: 203322381311
Effective search space used: 203322381311
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.75  gvh: 0.38  alm: 0.33  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U11437-1 is nuc
VS (DIR, S) 0
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 1
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0