Contig-U01767-1
Contig ID Contig-U01767-1
Contig update 2001. 8.29
Contig sequence
>Contig-U01767-1 (Contig-U01767-1Q) /CSM_Contig/Contig-U01767-1Q.Seq.d
TTTTGGTTTTTTTTTTTTTTTTCCCCCTTTTTTTCCAAAAAAGNTTAAAG
NTTTTTTTTTTTTTTTAAAAATNNTTTTTTTTTTTTAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA

Gap no gap
Contig length 207
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 1
Number of EST 1
Link to clone list U01767
List of clone(s)

est1=SSH131Z,1,208
Translated Amino Acid sequence
fwfffffspffskkx*XFFFFFKNXFFFLKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
KKKKKKKKK


Translated Amino Acid sequence (All Frames)
Frame A:
fwfffffspffskkx*XFFFFFKNXFFFLKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
KKKKKKKKK


Frame B:
fgfffffppffpkkxkxfffflkxxfff*kkkkkkkkkkkkkkkkkkkkkkkkkkkkkkk
kkkkkkkk


Frame C:
lvfffffplffqkxlkxffff*kxffffkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkk
kkkkkkkk


own update ----------
Homology vs CSM-cDNA -
dna update 2005. 8.10
Homology vs DNA
Query= Contig-U01767-1 (Contig-U01767-1Q) /CSM_Contig/Contig-U01767-1Q.Seq.d
(207 letters)

Database: ddbjhum1.seq; ddbjhum10.seq; ddbjhum11.seq; ddbjhum12.seq;
ddbjhum13.seq; ddbjhum14.seq; ddbjhum15.seq; ddbjhum16.seq;
ddbjhum17.seq; ddbjhum18.seq; ddbjhum19.seq; ddbjhum2.seq;
ddbjhum20.seq; ddbjhum21.seq; ddbjhum22.seq; ddbjhum3.seq;
ddbjhum4.seq; ddbjhum5.seq; ddbjhum6.seq; ddbjhum7.seq; ddbjhum8.seq;
ddbjhum9.seq; ddbjpri.seq; ddbjrod1.seq; ddbjrod10.seq; ddbjrod11.seq;
ddbjrod12.seq; ddbjrod13.seq; ddbjrod14.seq; ddbjrod15.seq;
ddbjrod2.seq; ddbjrod3.seq; ddbjrod4.seq; ddbjrod5.seq; ddbjrod6.seq;
ddbjrod7.seq; ddbjrod8.seq; ddbjrod9.seq; ddbjmam.seq; ddbjvrt1.seq;
ddbjvrt2.seq; ddbjvrt3.seq; ddbjvrt4.seq; ddbjvrt5.seq; ddbjvrt6.seq;
ddbjvrt7.seq; ddbjinv1.seq; ddbjinv2.seq; ddbjinv3.seq; ddbjinv4.seq;
ddbjinv5.seq; ddbjinv6.seq; ddbjpln1.seq; ddbjpln10.seq;
ddbjpln11.seq; ddbjpln12.seq; ddbjpln13.seq; ddbjpln2.seq;
ddbjpln3.seq; ddbjpln4.seq; ddbjpln5.seq; ddbjpln6.seq; ddbjpln7.seq;
ddbjpln8.seq; ddbjpln9.seq; ddbjbct1.seq; ddbjbct2.seq; ddbjbct3.seq;
ddbjbct4.seq; ddbjbct5.seq; ddbjbct6.seq; ddbjbct7.seq; ddbjbct8.seq;
ddbjbct9.seq; ddbjvrl1.seq; ddbjvrl2.seq; ddbjvrl3.seq; ddbjvrl4.seq;
ddbjphg.seq; ddbjuna.seq; ddbjgss1.seq; ddbjgss10.seq; ddbjgss100.seq;
ddbjgss101.seq; ddbjgss102.seq; ddbjgss103.seq; ddbjgss104.seq;
ddbjgss105.seq; ddbjgss106.seq; ddbjgss107.seq; ddbjgss108.seq;
ddbjgss109.seq; ddbjgss11.seq; ddbjgss110.seq; ddbjgss111.seq;
ddbjgss112.seq; ddbjgss113.seq; ddbjgss114.seq; ddbjgss12.seq;
ddbjgss13.seq; ddbjgss14.seq; ddbjgss15.seq; ddbjgss16.seq;
ddbjgss17.seq; ddbjgss18.seq; ddbjgss19.seq; ddbjgss2.seq;
ddbjgss20.seq; ddbjgss21.seq; ddbjgss22.seq; ddbjgss23.seq;
ddbjgss24.seq; ddbjgss25.seq; ddbjgss26.seq; ddbjgss27.seq;
ddbjgss28.seq; ddbjgss29.seq; ddbjgss3.seq; ddbjgss30.seq;
ddbjgss31.seq; ddbjgss32.seq; ddbjgss33.seq; ddbjgss34.seq;
ddbjgss35.seq; ddbjgss36.seq; ddbjgss37.seq; ddbjgss38.seq;
ddbjgss39.seq; ddbjgss4.seq; ddbjgss40.seq; ddbjgss41.seq;
ddbjgss42.seq; ddbjgss43.seq; ddbjgss44.seq; ddbjgss45.seq;
ddbjgss46.seq; ddbjgss47.seq; ddbjgss48.seq; ddbjgss49.seq;
ddbjgss5.seq; ddbjgss50.seq; ddbjgss51.seq; ddbjgss52.seq;
ddbjgss53.seq; ddbjgss54.seq; ddbjgss55.seq; ddbjgss56.seq;
ddbjgss57.seq; ddbjgss58.seq; ddbjgss59.seq; ddbjgss6.seq;
ddbjgss60.seq; ddbjgss61.seq; ddbjgss62.seq; ddbjgss63.seq;
ddbjgss64.seq; ddbjgss65.seq; ddbjgss66.seq; ddbjgss67.seq;
ddbjgss68.seq; ddbjgss69.seq; ddbjgss7.seq; ddbjgss70.seq;
ddbjgss71.seq; ddbjgss72.seq; ddbjgss73.seq; ddbjgss74.seq;
ddbjgss75.seq; ddbjgss76.seq; ddbjgss77.seq; ddbjgss78.seq;
ddbjgss79.seq; ddbjgss8.seq; ddbjgss80.seq; ddbjgss81.seq;
ddbjgss82.seq; ddbjgss83.seq; ddbjgss84.seq; ddbjgss85.seq;
ddbjgss86.seq; ddbjgss87.seq; ddbjgss88.seq; ddbjgss89.seq;
ddbjgss9.seq; ddbjgss90.seq; ddbjgss91.seq; ddbjgss92.seq;
ddbjgss93.seq; ddbjgss94.seq; ddbjgss95.seq; ddbjgss96.seq;
ddbjgss97.seq; ddbjgss98.seq; ddbjgss99.seq; ddbjhtg1.seq;
ddbjhtg10.seq; ddbjhtg11.seq; ddbjhtg12.seq; ddbjhtg13.seq;
ddbjhtg14.seq; ddbjhtg15.seq; ddbjhtg16.seq; ddbjhtg17.seq;
ddbjhtg18.seq; ddbjhtg19.seq; ddbjhtg2.seq; ddbjhtg20.seq;
ddbjhtg21.seq; ddbjhtg22.seq; ddbjhtg23.seq; ddbjhtg24.seq;
ddbjhtg25.seq; ddbjhtg26.seq; ddbjhtg27.seq; ddbjhtg28.seq;
ddbjhtg29.seq; ddbjhtg3.seq; ddbjhtg30.seq; ddbjhtg31.seq;
ddbjhtg32.seq; ddbjhtg33.seq; ddbjhtg34.seq; ddbjhtg35.seq;
ddbjhtg36.seq; ddbjhtg37.seq; ddbjhtg38.seq; ddbjhtg39.seq;
ddbjhtg4.seq; ddbjhtg40.seq; ddbjhtg41.seq; ddbjhtg42.seq;
ddbjhtg43.seq; ddbjhtg44.seq; ddbjhtg45.seq; ddbjhtg46.seq;
ddbjhtg47.seq; ddbjhtg48.seq; ddbjhtg49.seq; ddbjhtg5.seq;
ddbjhtg50.seq; ddbjhtg51.seq; ddbjhtg52.seq; ddbjhtg53.seq;
ddbjhtg54.seq; ddbjhtg6.seq; ddbjhtg7.seq; ddbjhtg8.seq; ddbjhtg9.seq;
ddbjpat1.seq; ddbjpat10.seq; ddbjpat11.seq; ddbjpat12.seq;
ddbjpat13.seq; ddbjpat14.seq; ddbjpat15.seq; ddbjpat16.seq;
ddbjpat17.seq; ddbjpat18.seq; ddbjpat2.seq; ddbjpat3.seq;
ddbjpat4.seq; ddbjpat5.seq; ddbjpat6.seq; ddbjpat7.seq; ddbjpat8.seq;
ddbjpat9.seq; ddbjsts1.seq; ddbjsts10.seq; ddbjsts11.seq;
ddbjsts12.seq; ddbjsts2.seq; ddbjsts3.seq; ddbjsts4.seq; ddbjsts5.seq;
ddbjsts6.seq; ddbjsts7.seq; ddbjsts8.seq; ddbjsts9.seq; ddbjsyn.seq;
est_atha1.seq; /db/DDBJNEW.DATA/b/new_est_atha1.seq; est_cele1.seq;
/db/DDBJNEW.DATA/b/new_est_cele1.seq; est_drer1.seq;
/db/DDBJNEW.DATA/b/new_est_drer1.seq; est_dmel1.seq; est_gmax1.seq;
/db/DDBJNEW.DATA/b/new_est_gmax1.seq; est_hum1.seq; est_hum2.seq;
est_hum3.seq; est_hum4.seq; /db/DDBJNEW.DATA/b/new_est_hum1.seq;
est_lesc1.seq; /db/DDBJNEW.DATA/b/new_est_lesc1.seq; est_mous1.seq;
est_mous2.seq; est_mous3.seq; /db/DDBJNEW.DATA/b/new_est_mous1.seq;
est_osat1.seq; /db/DDBJNEW.DATA/b/new_est_osat1.seq; est_rnor1.seq;
/db/DDBJNEW.DATA/b/new_est_rnor1.seq; est_xlae1.seq;
/db/DDBJNEW.DATA/b/new_est_xlae1.seq; est_zmay1.seq;
/db/DDBJNEW.DATA/b/new_est_zmay1.seq; est_rest1.seq; est_rest2.seq;
est_rest3.seq; est_rest4.seq; est_rest5.seq; est_rest6.seq;
est_rest7.seq; /db/DDBJNEW.DATA/b/new_est_rest1.seq;
/db/DDBJNEW.DATA/b/new_est_rest2.seq
42,429,480 sequences; ],699,368,621 total letters

Searchingdone

***** No hits found ******

Lambda K H
-1.00 -1.00 -1.00

[blastall] WARNING: [000.000] 1123534854.asblm.dna: SetUpBlastSearch failed.
[blastall] ERROR: [000.000] 1123534854.asblm.dna: BLASTSetUpSearch: Unable to calculate Karlin-Altschul params, check query sequence

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.

protein update 2009. 7.18
Homology vs Protein
Query= Contig-U01767-1 (Contig-U01767-1Q) /CSM_Contig/Contig-U01767-1Q.Seq.d
(207 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 3,761,249
Number of extensions: 37
Number of sequences better than 10.0: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 69
Length of database: 1,051,180,864
Length adjustment: 41
Effective length of query: 28
Effective length of database: 918,481,945
Effective search space: 25717494460
Effective search space used: 25717494460
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 26 (14.6 bits)

PSORT

psg: 0.67 gvh: 0.13 alm: 0.61 top: 0.53 tms: 0.00 mit: 0.37 mip: 0.00
nuc: 4.76 erl: 0.00 erm: 0.80 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

72.0 %: nuclear
20.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: mitochondrial

>> prediction for Contig-U01767-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0