Contig-U11404-1
Contig ID Contig-U11404-1
Contig update 2002.12.18
Contig sequence
>Contig-U11404-1 (Contig-U11404-1Q) /CSM_Contig/Contig-U11404-1Q.Seq.d
ATTTTAAGAGTTTTAATTTTAATAACTATACTTTTAATAAAGAACAATTT
GGATATTTAGCAGAGGTATTAAAATGTAATTCAACAGTTGAAGATCTTAG
TTTAAATAATGTTGGTTTAAAACATGATACTATGCCAATTATTGCAACAG
CTTTGTCTTCAAATAAAAATTTAGCACTTACTGCAATTGATATTTCAAAT
AATCAAATTGAAGATAAAGGTATGACAGCTTTTTCAAGTTATGTTGCTTC
AAGTTTAAGAGGTATTGCATCATTAGATGTTTCAAATACAAATTGTAATA
AAGCTGGTATTTCAGTATTAACTAATGCATTGAAAAAGAATATAAAGATG
TCATCAACATTATCTTATTTAAATTTATCAGGTAATAAGATGGAAGCAGA
TGGTAGTGCTGGTTTATCAAGTTTTTTAGCAAGTCCAAATACATTGAAAA
CTTTAAACATTTCAAATACAACACCATCAATGGAAACAATTGTAGGCGCA
TTGGTAATTGGTTGTGCTGAACTTAAAACAATTGATATCTCTGATAATAA
ATTAACCAAAAAAGAAGTACCACATTTAGTTAGATTCATTGGTGCTTCTT
CAACTTTAAAACATTTCAATTTATCTGGTACAAAAGTACCTGTTGAAAAT
TTAAAGGAATTAGTTGTTGCAATTACTTCAAATATTTATTTACAAGATGT
TGTATTAGATCTTAAAAATAATGATTTAGGTATTGCAGGTGCAAGAATGT
TAGCATCATTAGCAACAGATAAATTATCAAATGTTATTTATTTAGATGTA
TCAGAAAATGATTTTGGTGATGAAGGTGTATCAGTAATTTGTGATGGATT
TGTTGGTAATAGTACAATAAAGAAATTAATTTTGAATGGTAATTTTAAAC
AATCTAAAAC----------CCTACGAGAAAATTACCATTGGCTTGGATA
GTGTTTTCAAGGATTTAATATTGGAAGAATCTCAAGCTCAAAATGAAGCT
AGTGGTGCCACCCCAATTCCAGATAGTCCTGTACCAACAAGATCACCACA
ACCAACCTCACCACCGATCACTCCACAACCAACTCCAACCACCAATGTTC
CACCTGTCACTGCCCCAAGAACTGGTGCTGCTGCTCCTCTTAAACCTGCA
AATCCACCACCAGTTTCAACTACAACTACACCACCAGTTTCAACTACACC
AAAACCAACTCAACCAGTCTCTAAATTTGGTGCTAAATTATCAGCAAACT
CTGCTGTCGCCGAGGCTATCGCTAGAAATATGGGTGGAGGTGCGCCACCA
ATCAGAAAACCAGTAGCACCAGAACCAGAACCAGAACCAGTCACTCCAAC
TAAAGATGTTACACCACTTAAATCAAAACCTGTTGTTGCTCCAAGATCAA
CTCCAACCACTTCAACCCCAACTAAAACACCTGTTAAAAAACCATCTGGT
CCAAGTGTACCAGGTTCATTATCAGATGCACCAGAAAGTGATTCTGCTGA
ATTAACTCACGTTACTGCTAGTAGACCACATATTGCTTCAAAGAGAAAAC
CACCAACAAGAAGACCAAGACCACCGACCGAAAATTAAATTGTATTTGAT
TTTTTTTCTTTTGAACCAGAAAAAAAAA

Gap gap included
Contig length 1618
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 1729583
End point 1727965
Strand (PLUS/MINUS) MINUS
Number of clones 11
Number of EST 19
Link to clone list U11404
List of clone(s)

est1=VHN632F,1,585
est2=VHK329F,12,634
est3=VHL802F,13,653
est4=AHI527F,41,655
est5=VHC848F,138,761
est6=VHC437F,171,835
est7=VHP889F,249,910
est8=VFK111F,294,875
est9=VHN632Z,911,1596
est10=VHL802Z,912,1580
est11=SHE817Z,918,1416
est12=VHC437Z,944,1601
est13=AHI527Z,976,1577
est14=VFK111Z,987,1592
est15=VHK329Z,993,1597
est16=SLD123Z,1031,1619
est17=VHC848Z,1077,1600
est18=SLD154Z,1102,1619
est19=VHP889Z,1135,1494
Translated Amino Acid sequence
FKSFNFNNYTFNKEQFGYLAEVLKCNSTVEDLSLNNVGLKHDTMPIIATALSSNKNLALT
AIDISNNQIEDKGMTAFSSYVASSLRGIASLDVSNTNCNKAGISVLTNALKKNIKMSSTL
SYLNLSGNKMEADGSAGLSSFLASPNTLKTLNISNTTPSMETIVGALVIGCAELKTIDIS
DNKLTKKEVPHLVRFIGASSTLKHFNLSGTKVPVENLKELVVAITSNIYLQDVVLDLKNN
DLGIAGARMLASLATDKLSNVIYLDVSENDFGDEGVSVICDGFVGNSTIKKLILNGNFKQ
SK---

---YEKITIGLDSVFKDLILEESQAQNEASGATPIPDSPVPTRSPQPTSPPITPQPTPTT
NVPPVTAPRTGAAAPLKPANPPPVSTTTTPPVSTTPKPTQPVSKFGAKLSANSAVAEAIA
RNMGGGAPPIRKPVAPEPEPEPVTPTKDVTPLKSKPVVAPRSTPTTSTPTKTPVKKPSGP
SVPGSLSDAPESDSAELTHVTASRPHIASKRKPPTRRPRPPTEN*ivfdffsfepekk


Translated Amino Acid sequence (All Frames)
Frame A:
ilrvlilitilliknnldi*qry*nviqqlkilv*imlv*nmilcqllqqlclqiki*hl
lqlifqiiklkikv*qlfqvmllqv*evlhh*mfqiqiviklvfqy*lmh*kri*rchqh
yli*iyqvirwkqmvvlvyqvf*qvqih*kl*tfqiqhhqwkql*ahw*lvvlnlkqlis
liin*pkkkyhi*ldslvllql*nisiylvqkyllki*rn*llqllqifiykmly*ilki
mi*vlqvqec*hh*qqinyqmlfi*myqkmilvmkvyq*fvmdllvivq*rn*f*mviln
nlk---

---ptrklplawivfsri*ywknlklkmklvvppqfqivlyqqdhhnqphhrslhnqlqp
pmfhlslpqelvlllllnlqihhqfqlqlhhqfqlhqnqlnqslnlvlnyqqtllsprls
leiwvevrhqsenq*hqnqnqnqslqlkmlhhlnqnllllqdqlqplqpqlkhllknhlv
qvyqvhyqmhqkvilln*ltlllvdhillqrenhqqedqdhrpkiklyliffllnqkkk

Frame B:
f*ef*f**lyf**rtiwifsrgikm*fns*rs*fk*cwfkt*yyanycnsfvfk*kfsty
cn*yfk*sn*r*rydsffklccfkfkryciircfkykl**swyfsin*ciekeykdvini
ilfkfir**dgsrw*cwfikffskskyienfkhfkyntingnncrrignwlc*t*nn*yl
***inqkrsttfs*ihwcffnfktfqfiwykstc*kfkgisccnyfkylftrccirs*k*
*frycrcknvsiisnr*iikcylfrcirk*fw**rcisnl*wicw**ynkeinfew*f*t
i*n---

---lrenyhwlg*cfqgfnigrisssk*s*wchpnsr*sctnkitttnlttdhsttnsnh
qcstchcpknwcccss*tcksttsfnynyttsfnytktnstsl*iwc*iisklccrrgyr
*kygwrcatnqktsstrtrtrtshsn*rcytt*iktcccskinsnhfnpn*ntc*ktiws
kctrfiirctrk*fc*insryc**ttycfkekttnkktkttdrklnci*ffff*trkk

Frame C:
FKSFNFNNYTFNKEQFGYLAEVLKCNSTVEDLSLNNVGLKHDTMPIIATALSSNKNLALT
AIDISNNQIEDKGMTAFSSYVASSLRGIASLDVSNTNCNKAGISVLTNALKKNIKMSSTL
SYLNLSGNKMEADGSAGLSSFLASPNTLKTLNISNTTPSMETIVGALVIGCAELKTIDIS
DNKLTKKEVPHLVRFIGASSTLKHFNLSGTKVPVENLKELVVAITSNIYLQDVVLDLKNN
DLGIAGARMLASLATDKLSNVIYLDVSENDFGDEGVSVICDGFVGNSTIKKLILNGNFKQ
SK---

---YEKITIGLDSVFKDLILEESQAQNEASGATPIPDSPVPTRSPQPTSPPITPQPTPTT
NVPPVTAPRTGAAAPLKPANPPPVSTTTTPPVSTTPKPTQPVSKFGAKLSANSAVAEAIA
RNMGGGAPPIRKPVAPEPEPEPVTPTKDVTPLKSKPVVAPRSTPTTSTPTKTPVKKPSGP
SVPGSLSDAPESDSAELTHVTASRPHIASKRKPPTRRPRPPTEN*ivfdffsfepekk

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U11404-1 (Contig-U11404-1Q)
/CSM_Contig/Contig-U11404-1Q.Seq.d
(1628 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U11404-1 (Contig-U11404-1Q) /CSM_Contig/Conti... 3150 0.0
Contig-U13326-1 (Contig-U13326-1Q) /CSM_Contig/Conti... 56 1e-07
Contig-U10314-1 (Contig-U10314-1Q) /CSM_Contig/Conti... 42 0.002
Contig-U14818-1 (Contig-U14818-1Q) /CSM_Contig/Conti... 38 0.029
Contig-U13941-1 (Contig-U13941-1Q) /CSM_Contig/Conti... 38 0.029
Contig-U09555-1 (Contig-U09555-1Q) /CSM_Contig/Conti... 38 0.029
Contig-U06293-1 (Contig-U06293-1Q) /CSM_Contig/Conti... 38 0.029
Contig-U12529-1 (Contig-U12529-1Q) /CSM_Contig/Conti... 36 0.12
Contig-U12428-1 (Contig-U12428-1Q) /CSM_Contig/Conti... 36 0.12
Contig-U11303-1 (Contig-U11303-1Q) /CSM_Contig/Conti... 36 0.12

>Contig-U11404-1 (Contig-U11404-1Q) /CSM_Contig/Contig-U11404-1Q.Seq.d
Length = 1628

Score = 3150 bits (1589), Expect = 0.0
Identities = 1619/1619 (100%)
Strand = Plus / Plus


Query: 1 attttaagagttttaattttaataactatacttttaataaagaacaatttggatatttag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 attttaagagttttaattttaataactatacttttaataaagaacaatttggatatttag 60


Query: 61 cagaggtattaaaatgtaattcaacagttgaagatcttagtttaaataatgttggtttaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cagaggtattaaaatgtaattcaacagttgaagatcttagtttaaataatgttggtttaa 120


Query: 121 aacatgatactatgccaattattgcaacagctttgtcttcaaataaaaatttagcactta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aacatgatactatgccaattattgcaacagctttgtcttcaaataaaaatttagcactta 180


Query: 181 ctgcaattgatatttcaaataatcaaattgaagataaaggtatgacagctttttcaagtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ctgcaattgatatttcaaataatcaaattgaagataaaggtatgacagctttttcaagtt 240


Query: 241 atgttgcttcaagtttaagaggtattgcatcattagatgtttcaaatacaaattgtaata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atgttgcttcaagtttaagaggtattgcatcattagatgtttcaaatacaaattgtaata 300


Query: 301 aagctggtatttcagtattaactaatgcattgaaaaagaatataaagatgtcatcaacat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aagctggtatttcagtattaactaatgcattgaaaaagaatataaagatgtcatcaacat 360


Query: 361 tatcttatttaaatttatcaggtaataagatggaagcagatggtagtgctggtttatcaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tatcttatttaaatttatcaggtaataagatggaagcagatggtagtgctggtttatcaa 420


Query: 421 gttttttagcaagtccaaatacattgaaaactttaaacatttcaaatacaacaccatcaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gttttttagcaagtccaaatacattgaaaactttaaacatttcaaatacaacaccatcaa 480


Query: 481 tggaaacaattgtaggcgcattggtaattggttgtgctgaacttaaaacaattgatatct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tggaaacaattgtaggcgcattggtaattggttgtgctgaacttaaaacaattgatatct 540


Query: 541 ctgataataaattaaccaaaaaagaagtaccacatttagttagattcattggtgcttctt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ctgataataaattaaccaaaaaagaagtaccacatttagttagattcattggtgcttctt 600


Query: 601 caactttaaaacatttcaatttatctggtacaaaagtacctgttgaaaatttaaaggaat 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 caactttaaaacatttcaatttatctggtacaaaagtacctgttgaaaatttaaaggaat 660


Query: 661 tagttgttgcaattacttcaaatatttatttacaagatgttgtattagatcttaaaaata 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tagttgttgcaattacttcaaatatttatttacaagatgttgtattagatcttaaaaata 720


Query: 721 atgatttaggtattgcaggtgcaagaatgttagcatcattagcaacagataaattatcaa 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 atgatttaggtattgcaggtgcaagaatgttagcatcattagcaacagataaattatcaa 780


Query: 781 atgttatttatttagatgtatcagaaaatgattttggtgatgaaggtgtatcagtaattt 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 atgttatttatttagatgtatcagaaaatgattttggtgatgaaggtgtatcagtaattt 840


Query: 841 gtgatggatttgttggtaatagtacaataaagaaattaattttgaatggtaattttaaac 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 gtgatggatttgttggtaatagtacaataaagaaattaattttgaatggtaattttaaac 900


Query: 901 aatctaaaacnnnnnnnnnncctacgagaaaattaccattggcttggatagtgttttcaa 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 aatctaaaacnnnnnnnnnncctacgagaaaattaccattggcttggatagtgttttcaa 960


Query: 961 ggatttaatattggaagaatctcaagctcaaaatgaagctagtggtgccaccccaattcc 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 ggatttaatattggaagaatctcaagctcaaaatgaagctagtggtgccaccccaattcc 1020


Query: 1021 agatagtcctgtaccaacaagatcaccacaaccaacctcaccaccgatcactccacaacc 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 agatagtcctgtaccaacaagatcaccacaaccaacctcaccaccgatcactccacaacc 1080


Query: 1081 aactccaaccaccaatgttccacctgtcactgccccaagaactggtgctgctgctcctct 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 aactccaaccaccaatgttccacctgtcactgccccaagaactggtgctgctgctcctct 1140


Query: 1141 taaacctgcaaatccaccaccagtttcaactacaactacaccaccagtttcaactacacc 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 taaacctgcaaatccaccaccagtttcaactacaactacaccaccagtttcaactacacc 1200


Query: 1201 aaaaccaactcaaccagtctctaaatttggtgctaaattatcagcaaactctgctgtcgc 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 aaaaccaactcaaccagtctctaaatttggtgctaaattatcagcaaactctgctgtcgc 1260


Query: 1261 cgaggctatcgctagaaatatgggtggaggtgcgccaccaatcagaaaaccagtagcacc 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 cgaggctatcgctagaaatatgggtggaggtgcgccaccaatcagaaaaccagtagcacc 1320


Query: 1321 agaaccagaaccagaaccagtcactccaactaaagatgttacaccacttaaatcaaaacc 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 agaaccagaaccagaaccagtcactccaactaaagatgttacaccacttaaatcaaaacc 1380


Query: 1381 tgttgttgctccaagatcaactccaaccacttcaaccccaactaaaacacctgttaaaaa 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1381 tgttgttgctccaagatcaactccaaccacttcaaccccaactaaaacacctgttaaaaa 1440


Query: 1441 accatctggtccaagtgtaccaggttcattatcagatgcaccagaaagtgattctgctga 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1441 accatctggtccaagtgtaccaggttcattatcagatgcaccagaaagtgattctgctga 1500


Query: 1501 attaactcacgttactgctagtagaccacatattgcttcaaagagaaaaccaccaacaag 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1501 attaactcacgttactgctagtagaccacatattgcttcaaagagaaaaccaccaacaag 1560


Query: 1561 aagaccaagaccaccgaccgaaaattaaattgtatttgattttttttcttttgaaccag 1619
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1561 aagaccaagaccaccgaccgaaaattaaattgtatttgattttttttcttttgaaccag 1619


>Contig-U13326-1 (Contig-U13326-1Q) /CSM_Contig/Contig-U13326-1Q.Seq.d
Length = 240

Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus


Query: 921 cctacgagaaaattaccattggcttgga 948
||||||||||||||||||||||||||||
Sbjct: 213 cctacgagaaaattaccattggcttgga 240


>Contig-U10314-1 (Contig-U10314-1Q) /CSM_Contig/Contig-U10314-1Q.Seq.d
Length = 878

Score = 42.1 bits (21), Expect = 0.002
Identities = 21/21 (100%)
Strand = Plus / Minus


Query: 1319 ccagaaccagaaccagaacca 1339
|||||||||||||||||||||
Sbjct: 764 ccagaaccagaaccagaacca 744


Score = 32.2 bits (16), Expect = 1.8
Identities = 16/16 (100%)
Strand = Plus / Minus


Query: 1325 ccagaaccagaaccag 1340
||||||||||||||||
Sbjct: 764 ccagaaccagaaccag 749


Score = 32.2 bits (16), Expect = 1.8
Identities = 16/16 (100%)
Strand = Plus / Minus


Query: 1318 accagaaccagaacca 1333
||||||||||||||||
Sbjct: 759 accagaaccagaacca 744


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 31,767
Number of Sequences: 6905
Number of extensions: 31767
Number of successful extensions: 3844
Number of sequences better than 10.0: 357
length of query: 1628
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1612
effective length of database: 5,564,391
effective search space: 8969798292
effective search space used: 8969798292
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.24
Homology vs DNA
Query= Contig-U11404-1 (Contig-U11404-1Q) /CSM_Contig/Contig-U11404-1Q.Seq.d
(1628 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ427543) Dictyostelium discoideum cDNA clone:ddv62b24, 5' ... 1312 0.0 1
(BJ419207) Dictyostelium discoideum cDNA clone:ddv35j10, 5' ... 1296 0.0 1
(BJ424913) Dictyostelium discoideum cDNA clone:ddv54d02, 5' ... 1269 0.0 1
(BJ419558) Dictyostelium discoideum cDNA clone:ddv36p12, 5' ... 1229 0.0 1
(BJ424096) Dictyostelium discoideum cDNA clone:ddv51j07, 5' ... 1227 0.0 1
(BJ334922) Dictyostelium discoideum cDNA clone:dda48e07, 5' ... 1203 0.0 1
(BJ414975) Dictyostelium discoideum cDNA clone:ddv21e03, 5' ... 1146 0.0 1
(BJ426276) Dictyostelium discoideum cDNA clone:ddv58o08, 5' ... 1013 0.0 2
(AF388524) Dictyostelium discoideum carmil gene, complete cds. 981 0.0 6
(BJ445102) Dictyostelium discoideum cDNA clone:ddv58o08, 3' ... 975 0.0 3
(BJ443756) Dictyostelium discoideum cDNA clone:ddv54d02, 3' ... 961 0.0 2
(BJ437787) Dictyostelium discoideum cDNA clone:ddv35j10, 3' ... 938 0.0 3
(BJ442925) Dictyostelium discoideum cDNA clone:ddv51j07, 3' ... 975 0.0 2
(BJ352898) Dictyostelium discoideum cDNA clone:dda48e07, 3' ... 781 0.0 3
(BJ433188) Dictyostelium discoideum cDNA clone:ddv21e03, 3' ... 959 0.0 2
(AU052307) Dictyostelium discoideum slug cDNA, clone SLD123. 981 0.0 1
(AU052330) Dictyostelium discoideum slug cDNA, clone SLD154. 967 0.0 1
(BJ438136) Dictyostelium discoideum cDNA clone:ddv36p12, 3' ... 406 0.0 6
(BJ405789) Dictyostelium discoideum cDNA clone:dds33b06, 3' ... 630 0.0 2
(BJ446446) Dictyostelium discoideum cDNA clone:ddv62b24, 3' ... 557 e-176 2
(AE017332) Mycoplasma hyopneumoniae 232, complete genome. 42 8e-04 20
(AU061096) Dictyostelium discoideum slug cDNA, clone SLD154. 58 0.001 1
(CR730321) Tetraodon nigroviridis full-length cDNA. 54 0.017 1
(EK115329) 1092963222974 Global-Ocean-Sampling_GS-31-01-01-1... 54 0.017 1
(BH137059) ENTMX95TR Entamoeba histolytica Sheared DNA Entam... 38 0.029 3
(AZ680651) ENTKA34TR Entamoeba histolytica Sheared DNA Entam... 38 0.030 3
(CP000498) Pichia stipitis CBS 6054 chromosome 4, complete s... 52 0.068 1
(U91658) Plasmodium falciparum isolate V401, merozoite surfa... 52 0.068 1
(U91657) Plasmodium falciparum isolate V393, merozoite surfa... 52 0.068 1
(U91650) Plasmodium falciparum isolate V306, merozoite surfa... 52 0.068 1
(U91649) Plasmodium falciparum isolate RO33, merozoite surfa... 52 0.068 1
(AY587893) Plasmodium falciparum merozoite surface protein 2... 52 0.068 1
(EK420005) 1095515498991 Global-Ocean-Sampling_GS-31-01-01-1... 52 0.068 1
(EK034035) 1092959144662 Global-Ocean-Sampling_GS-31-01-01-1... 52 0.068 1
(EJ264110) 1095349062954 Global-Ocean-Sampling_GS-27-01-01-1... 52 0.068 1
(EJ264026) 1095349062378 Global-Ocean-Sampling_GS-27-01-01-1... 52 0.068 1
(DX769465) 2661171 VV07 Ustilago maydis genomic clone 116892... 52 0.068 1
(DX769261) 2637914 VV07 Ustilago maydis genomic clone 116759... 52 0.068 1
(DX665393) 2293143 VV02 Ustilago maydis genomic clone 941030... 52 0.068 1
(AL183128) Tetraodon nigroviridis genome survey sequence PUC... 52 0.068 1
(AL177112) Tetraodon nigroviridis genome survey sequence PUC... 52 0.068 1
(EX843499) CBNC397.fwd CBNC Phycomyces blakesleeanus NRRL155... 52 0.068 1
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734... 36 0.080 18
(AE017308) Mycoplasma mobile 163K complete genome. 38 0.11 20
(AL230193) Tetraodon nigroviridis genome survey sequence T7 ... 46 0.11 2
(AL198987) Tetraodon nigroviridis genome survey sequence PUC... 50 0.12 2
(EK297047) 1095462350764 Global-Ocean-Sampling_GS-31-01-01-1... 50 0.20 2
(AX344555) Sequence 6 from Patent WO0200932. 38 0.22 12
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124... 34 0.22 12
(CP000551) Prochlorococcus marinus str. AS9601, complete gen... 38 0.27 21
(AY245786) Shrimp white spot syndrome virus isolate china 95... 50 0.27 1
(AF440570) Shrimp white spot syndrome virus, complete genome. 50 0.27 1
(AF369029) White spot syndrome virus, complete genome. 50 0.27 1
(AF332093) White spot syndrome virus, complete genome. 50 0.27 1
(BK002126) TPA_inf: Drosophila melanogaster HDC10033 (HDC100... 50 0.27 1
(BV138799) PZA00196 Zea mays ssp. parviglumis CIMMYT 11355 Z... 50 0.27 1
(AL808147) Mouse DNA sequence from clone RP23-80N9 on chromo... 50 0.27 1
(CR382122) Kluyveromyces lactis strain NRRL Y-1140 chromosom... 50 0.27 1
(CQ603410) Sequence 31168 from Patent WO0171042. 50 0.27 1
(AX151673) Sequence 278 from Patent WO0138351. 50 0.27 1
(AX151396) Sequence 1 from Patent WO0138351. 50 0.27 1
(AE014296) Drosophila melanogaster chromosome 3L, complete s... 50 0.27 1
(AC091226) Drosophila melanogaster 3L BAC RP98-3I13 (Roswell... 50 0.27 1
(AC115551) Rattus norvegicus clone CH230-131E14, *** SEQUENC... 50 0.27 1
(AC017576) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 50 0.27 1
(AL309842) Tetraodon nigroviridis genome survey sequence T7 ... 50 0.27 1
(AL259882) Tetraodon nigroviridis genome survey sequence PUC... 50 0.27 1
(DH065737) Oryzias latipes Fosmid clone:GOLWFno125_a09, forw... 50 0.27 1
(DE271118) Oryzias latipes DNA, clone: ola1-201O24.R, genomi... 50 0.27 1
(ES374701) Is_Skin_4_E03 Guppy pDNR_LIB Istanbul wild Skin P... 50 0.27 1
(EC586938) H_H22_A01_01 H Rosa hybrid cultivar cDNA clone H2... 50 0.27 1
(DV464322) MTUNUL1.P26.A05 NUL Populus fremontii x Populus a... 50 0.27 1
(AM177937) Zosterisessor ophiocephalus EST, clone Zo_ZOPD1_0... 50 0.27 1
(BW616682) Lotus japonicus cDNA, clone: LjFL1-066-BC09, 5' e... 50 0.27 1
(BW614984) Lotus japonicus cDNA, clone: LjFL1-059-BD03, 5' e... 50 0.27 1
(BW610579) Lotus japonicus cDNA, clone: LjFL1-041-AE04, 5' e... 50 0.27 1
(BW601216) Lotus japonicus cDNA, clone: LjFL1-004-BB06, 5' e... 50 0.27 1
(CP001080) Sulfurihydrogenibium sp. YO3AOP1, complete genome. 50 0.27 1
(CP000284) Methylobacillus flagellatus KT, complete genome. 50 0.27 1
(AM440853) Vitis vinifera contig VV78X090285.11, whole genom... 46 0.37 2
(EJ603721) 1092961214965 Global-Ocean-Sampling_GS-29-01-01-1... 48 0.39 2
(EJ608185) 1092962024305 Global-Ocean-Sampling_GS-29-01-01-1... 48 0.47 2
(AE017244) Mycoplasma hyopneumoniae 7448, complete genome. 36 0.67 19
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 32 0.95 15
(AE014822) Plasmodium falciparum 3D7 chromosome 14 section 7... 36 1.0 9
(DQ680173) Hippoglossus hippoglossus skeletal muscle fast tr... 48 1.1 1
(AY294559) Tetraodon nigroviridis interleukin-24 (IL24) gene... 48 1.1 1
(AK220527) Mus musculus mRNA for mKIAA4180 protein. 48 1.1 1
(AC149596) Mus musculus BAC clone RP24-424J20 from 7, comple... 48 1.1 1
(AC145294) Mus musculus BAC clone RP23-88B16 from 7, complet... 48 1.1 1
(CR382136) Debaryomyces hansenii chromosome D of strain CBS7... 48 1.1 1
(CR382124) Kluyveromyces lactis strain NRRL Y-1140 chromosom... 48 1.1 1
(AC136573) Rattus norvegicus clone CH230-29M19, WORKING DRAF... 48 1.1 1
(CU856137) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 48 1.1 1
(AC181679) Strongylocentrotus purpuratus clone R3-3003B7, WO... 48 1.1 1
(AC176587) Strongylocentrotus purpuratus clone R3-3077J17, W... 48 1.1 1
(FH019716) CHO_OF458xh03f2.ab1 CHO_OF Nicotiana tabacum geno... 48 1.1 1
(FH019686) CHO_OF458xh03f1.ab1 CHO_OF Nicotiana tabacum geno... 48 1.1 1
(EK143521) 1095456008778 Global-Ocean-Sampling_GS-31-01-01-1... 48 1.1 1
(EK124065) 1092968600681 Global-Ocean-Sampling_GS-31-01-01-1... 48 1.1 1

>(BJ427543) Dictyostelium discoideum cDNA clone:ddv62b24, 5' end,
single read.
Length = 662

Score = 1312 bits (662), Expect = 0.0
Identities = 662/662 (100%)
Strand = Plus / Plus


Query: 249 tcaagtttaagaggtattgcatcattagatgtttcaaatacaaattgtaataaagctggt 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcaagtttaagaggtattgcatcattagatgtttcaaatacaaattgtaataaagctggt 60


Query: 309 atttcagtattaactaatgcattgaaaaagaatataaagatgtcatcaacattatcttat 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atttcagtattaactaatgcattgaaaaagaatataaagatgtcatcaacattatcttat 120


Query: 369 ttaaatttatcaggtaataagatggaagcagatggtagtgctggtttatcaagtttttta 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttaaatttatcaggtaataagatggaagcagatggtagtgctggtttatcaagtttttta 180


Query: 429 gcaagtccaaatacattgaaaactttaaacatttcaaatacaacaccatcaatggaaaca 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gcaagtccaaatacattgaaaactttaaacatttcaaatacaacaccatcaatggaaaca 240


Query: 489 attgtaggcgcattggtaattggttgtgctgaacttaaaacaattgatatctctgataat 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 attgtaggcgcattggtaattggttgtgctgaacttaaaacaattgatatctctgataat 300


Query: 549 aaattaaccaaaaaagaagtaccacatttagttagattcattggtgcttcttcaacttta 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aaattaaccaaaaaagaagtaccacatttagttagattcattggtgcttcttcaacttta 360


Query: 609 aaacatttcaatttatctggtacaaaagtacctgttgaaaatttaaaggaattagttgtt 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aaacatttcaatttatctggtacaaaagtacctgttgaaaatttaaaggaattagttgtt 420


Query: 669 gcaattacttcaaatatttatttacaagatgttgtattagatcttaaaaataatgattta 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gcaattacttcaaatatttatttacaagatgttgtattagatcttaaaaataatgattta 480


Query: 729 ggtattgcaggtgcaagaatgttagcatcattagcaacagataaattatcaaatgttatt 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ggtattgcaggtgcaagaatgttagcatcattagcaacagataaattatcaaatgttatt 540


Query: 789 tatttagatgtatcagaaaatgattttggtgatgaaggtgtatcagtaatttgtgatgga 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tatttagatgtatcagaaaatgattttggtgatgaaggtgtatcagtaatttgtgatgga 600


Query: 849 tttgttggtaatagtacaataaagaaattaattttgaatggtaattttaaacaatctaaa 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tttgttggtaatagtacaataaagaaattaattttgaatggtaattttaaacaatctaaa 660


Query: 909 ac 910
||
Sbjct: 661 ac 662

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,996,084,142
Number of extensions: 128623426
Number of successful extensions: 10753002
Number of sequences better than 10.0: 792
Length of query: 1628
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1604
Effective length of database: 97,308,875,965
Effective search space: 156083437047860
Effective search space used: 156083437047860
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.30
Homology vs Protein
Query= Contig-U11404-1 (Contig-U11404-1Q) /CSM_Contig/Contig-U11404-1Q.Seq.d
(1628 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AF388524_1(AF388524|pid:none) Dictyostelium discoideum carmil ge... 587 e-166
T02764(T02764) myosin-I binding protein 125 - Acanthamoeba caste... 226 2e-57
FJ009082_1(FJ009082|pid:none) Homo sapiens CARMIL1a (LRRC16A) mR... 155 5e-36
AY437876_1(AY437876|pid:none) Mus musculus CARMIL mRNA, complete... 149 4e-34
(Q6EDY6) RecName: Full=Leucine-rich repeat-containing protein 16... 149 4e-34
BC166169_1(BC166169|pid:none) Xenopus tropicalis hypothetical pr... 140 1e-31
(Q5XHY1) RecName: Full=Leucine-rich repeat-containing protein 16B; 133 2e-29
(Q3UFQ8) RecName: Full=Leucine-rich repeat-containing protein 16... 131 6e-29
FJ026014_1(FJ026014|pid:none) Homo sapiens CARMIL2b (RLTPR) mRNA... 131 8e-29
BX088593_3(BX088593|pid:none) Zebrafish DNA sequence from clone ... 123 2e-26
AB113647_1(AB113647|pid:none) Homo sapiens RLTPR mRNA for RGD, l... 118 5e-25
(Q3V3V9) RecName: Full=Leucine-rich repeat-containing protein 16... 109 3e-22
BX908798_1455(BX908798|pid:none) Parachlamydia-related symbiont ... 104 1e-20
AL683873_2(AL683873|pid:none) Mouse DNA sequence from clone RP23... 102 4e-20
AC114263_20(AC114263|pid:none) Dictyostelium discoideum chromoso... 102 5e-20
BX908798_264(BX908798|pid:none) Parachlamydia-related symbiont U... 100 3e-19
BX908798_1341(BX908798|pid:none) Parachlamydia-related symbiont ... 100 3e-19
BC166378_1(BC166378|pid:none) Xenopus tropicalis hypothetical pr... 96 4e-18
EU643474_20(EU643474|pid:none) Adineta vaga clone Av240_B G-prot... 90 2e-16
(Q5DU56) RecName: Full=Protein NLRC3; 86 4e-15
EU432548_11(EU432548|pid:none) Philodina roseola guanylyl cyclas... 86 4e-15
BC160196_1(BC160196|pid:none) Synthetic construct Mus musculus c... 86 4e-15
AY056236_1(AY056236|pid:none) Arabidopsis thaliana unknown prote... 84 2e-14
AM494972_448(AM494972|pid:none) Leishmania braziliensis chromoso... 81 1e-13
EU348832_1(EU348832|pid:none) Sus scrofa nucleotide-binding olig... 81 1e-13
T23427(T23427) hypothetical protein K07G5.1 - Caenorhabditis ele... 78 1e-12
AY266456_1(AY266456|pid:none) Synthetic construct leucine-rich r... 77 2e-12
CR954203_68(CR954203|pid:none) Ostreococcus tauri strain OTTH059... 75 9e-12
AM453162_2(AM453162|pid:none) Vitis vinifera contig VV78X048857.... 72 6e-11
CP001324_560(CP001324|pid:none) Micromonas sp. RCC299 chromosome... 71 1e-10
AK079766_1(AK079766|pid:none) Mus musculus 0 day neonate thymus ... 71 1e-10
BX248395_6(BX248395|pid:none) Zebrafish DNA sequence from clone ... 70 2e-10
BC134204_1(BC134204|pid:none) Danio rerio similar to LOC496076 p... 70 2e-10
CT005265_51(CT005265|pid:none) Leishmania major strain Friedlin,... 70 3e-10
AM494963_52(AM494963|pid:none) Leishmania braziliensis chromosom... 69 6e-10
AM502244_50(AM502244|pid:none) Leishmania infantum chromosome 26. 68 8e-10
(A0JPI9) RecName: Full=Uncharacterized protein C14orf166B homolo... 68 1e-09
CU695238_398(CU695238|pid:none) Ralstonia solanacearum strain Mo... 68 1e-09
CU914168_1295(CU914168|pid:none) Ralstonia solanacearum strain I... 68 1e-09
AC104642_21(AC104642|pid:none) Trypanosoma brucei chromosome 3 c... 67 2e-09
AB178010_1(AB178010|pid:none) Ralstonia solanacearum lrpC, lrpD ... 67 2e-09
AY266455_1(AY266455|pid:none) Synthetic construct leucine-rich r... 66 3e-09
EF396238_1(EF396238|pid:none) Nicotiana benthamiana RAN GTPase-a... 65 5e-09
AL646052_1799(AL646052|pid:none) Ralstonia solanacearum GMI1000 ... 65 9e-09
(Q9LE82) RecName: Full=RAN GTPase-activating protein 1; ... 64 2e-08
EF613347_1(EF613347|pid:none) Danio rerio NOD-like receptor C mR... 62 5e-08
BC153732_1(BC153732|pid:none) Xenopus tropicalis hypothetical pr... 62 5e-08
AM502247_310(AM502247|pid:none) Leishmania infantum chromosome 29. 62 8e-08
AM423108_1(AM423108|pid:none) Nicotiana benthamiana partial mRNA... 61 1e-07
AK074167_1(AK074167|pid:none) Homo sapiens mRNA for FLJ00240 pro... 60 2e-07
(Q8IZ02) RecName: Full=Leucine-rich repeat-containing protein 34... 60 2e-07
CU914168_1488(CU914168|pid:none) Ralstonia solanacearum strain I... 60 2e-07
AM438596_2(AM438596|pid:none) Vitis vinifera contig VV78X049162.... 60 3e-07
AM502254_692(AM502254|pid:none) Leishmania infantum chromosome 36. 59 4e-07
BC087492_1(BC087492|pid:none) Xenopus laevis hypothetical LOC496... 59 4e-07
EU643473_3(EU643473|pid:none) Adineta vaga clone Av240_A TPR rep... 59 4e-07
CP000087_1029(CP000087|pid:none) Rickettsia bellii RML369-C, com... 59 4e-07
CT005272_438(CT005272|pid:none) Leishmania major strain Friedlin... 59 7e-07
AB178010_2(AB178010|pid:none) Ralstonia solanacearum lrpC, lrpD ... 59 7e-07
AF501292_1(AF501292|pid:none) Homo sapiens CARD15-like protein m... 59 7e-07
CU694407_5(CU694407|pid:none) Ralstonia solanacearum strain MolK... 59 7e-07
CT005244_15(CT005244|pid:none) Leishmania major strain Friedlin,... 58 9e-07
AY329490_1(AY329490|pid:none) Mus musculus strain A/J MATER prot... 58 1e-06
AY329487_1(AY329487|pid:none) Mus musculus strain CBA/J MATER pr... 57 1e-06
C89243(C89243) protein F28C1.3 [imported] - Caenorhabditis elega... 57 1e-06
AY196362_1(AY196362|pid:none) Mus musculus strain CBA/J MATER pr... 57 1e-06
CP000849_411(CP000849|pid:none) Rickettsia bellii OSU 85-389, co... 57 2e-06
AL845526_4(AL845526|pid:none) Zebrafish DNA sequence from clone ... 57 3e-06
AC007067_12(AC007067|pid:none) Genomic sequence for Arabidopsis ... 57 3e-06
AM494942_15(AM494942|pid:none) Leishmania braziliensis chromosom... 56 3e-06
AY329484_1(AY329484|pid:none) Mus musculus strain SWR/J MATER pr... 56 4e-06
BC053384_1(BC053384|pid:none) Mus musculus NLR family, pyrin dom... 56 4e-06
(Q6VSG4) RecName: Full=NACHT, LRR and PYD domains-containing pro... 56 4e-06
AF501291_1(AF501291|pid:none) Homo sapiens CARD15-like protein m... 56 4e-06
(Q91VI7) RecName: Full=Ribonuclease inhibitor; AltName: Full=Rib... 55 7e-06
(Q9LJF3) RecName: Full=Serine/threonine-protein kinase BRI1-like... 55 7e-06
BC102768_1(BC102768|pid:none) Bos taurus ribonuclease/angiogenin... 55 7e-06
CP000587_82(CP000587|pid:none) Ostreococcus lucimarinus CCE9901 ... 55 7e-06
Z75539_5(Z75539|pid:none) Caenorhabditis elegans Cosmid F28C1, c... 55 1e-05
AF071546_1(AF071546|pid:none) Mus musculus ribonuclease/angiogen... 55 1e-05
(Q9M651) RecName: Full=RAN GTPase-activating protein 2; ... 54 1e-05
AF214560_1(AF214560|pid:none) Arabidopsis thaliana RAN GTPase ac... 54 1e-05
(Q647I9) RecName: Full=NACHT, LRR and PYD domains-containing pro... 54 2e-05
EU960259_1(EU960259|pid:none) Zea mays clone 222959 ran GTPase a... 54 2e-05
AK125722_1(AK125722|pid:none) Homo sapiens cDNA FLJ43734 fis, cl... 54 2e-05
AM411449_1(AM411449|pid:none) Solanum tuberosum subsp. tuberosum... 53 3e-05
BC169296_1(BC169296|pid:none) Synthetic construct Homo sapiens c... 53 4e-05
AL929041_1(AL929041|pid:none) Zebrafish DNA sequence from clone ... 53 4e-05
BX927173_1(BX927173|pid:none) Zebrafish DNA sequence from clone ... 53 4e-05
CP001102_78(CP001102|pid:none) Candidatus Amoebophilus asiaticus... 53 4e-05
AY266453_1(AY266453|pid:none) Synthetic construct leucine-rich r... 53 4e-05
BT054229_1(BT054229|pid:none) Zea mays full-length cDNA clone ZM... 52 5e-05
(P10775) RecName: Full=Ribonuclease inhibitor; AltName: Full=Rib... 52 5e-05
M58700_1(M58700|pid:none) Pig ribonuclease inhibitor (RI) mRNA, ... 52 5e-05
AK302466_1(AK302466|pid:none) Homo sapiens cDNA FLJ60966 complet... 52 6e-05
AK293661_1(AK293661|pid:none) Homo sapiens cDNA FLJ56393 complet... 52 6e-05
AM494960_17(AM494960|pid:none) Leishmania braziliensis chromosom... 52 8e-05
(Q14BP6) RecName: Full=Leucine-rich repeat-containing protein LO... 52 8e-05
AL845526_3(AL845526|pid:none) Zebrafish DNA sequence from clone ... 51 1e-04
(Q8BKR5) RecName: Full=Leucine-rich repeat-containing protein 68... 51 1e-04
AE017344_312(AE017344|pid:none) Cryptococcus neoformans var. neo... 51 1e-04
(Q6ZQY2) RecName: Full=Leucine-rich repeat-containing protein LO... 51 1e-04
CR954207_82(CR954207|pid:none) Ostreococcus tauri strain OTTH059... 51 1e-04
BC070501_1(BC070501|pid:none) Rattus norvegicus ribonuclease/ang... 50 2e-04
AC098833_9(AC098833|pid:none) Oryza sativa (japonica cultivar-gr... 50 2e-04
S20597(S20597) ribonuclease inhibitor - rat &X62528_1(X62528|pi... 50 2e-04
A45841(A45841) T-complex-associated-testes-expressed-1 protein -... 50 2e-04
AF111710_4(AF111710|pid:none) Oryza sativa subsp. indica putativ... 50 2e-04
(A6H639) RecName: Full=T-complex-associated testis-expressed pro... 50 2e-04
AJ720646_1(AJ720646|pid:none) Gallus gallus mRNA for hypothetica... 50 2e-04
(P29315) RecName: Full=Ribonuclease inhibitor; AltName: Full=Rib... 50 2e-04
AM423109_1(AM423109|pid:none) Nicotiana benthamiana partial mRNA... 50 2e-04
AL646053_673(AL646053|pid:none) Ralstonia solanacearum GMI1000 m... 50 3e-04
AK095125_1(AK095125|pid:none) Homo sapiens cDNA FLJ37806 fis, cl... 50 3e-04
AC152068_9(AC152068|pid:none) Medicago truncatula clone mth2-29p... 49 4e-04
AC122160_4(AC122160|pid:none) Medicago truncatula clone mth2-23d... 49 4e-04
EF469730_1(EF469730|pid:none) Sus scrofa toll-like receptor 7 (T... 49 4e-04
AM468931_2(AM468931|pid:none) Vitis vinifera contig VV78X005148.... 49 4e-04
AB178009_1(AB178009|pid:none) Ralstonia solanacearum lrpA, lrpB ... 49 4e-04
EF426479_1(EF426479|pid:none) Sus scrofa domestica toll-like rec... 49 4e-04
EU340329_1(EU340329|pid:none) Macaca mulatta NLR family pyrin do... 49 4e-04
BT044817_1(BT044817|pid:none) Salmo salar clone ssal-rgf-504-229... 49 4e-04
M36717_1(M36717|pid:none) Human ribonuclease/angiogenin inhibito... 49 4e-04
AB291813_1(AB291813|pid:none) Sus scrofa TLR7, TLR8, TMSB4X gene... 49 4e-04
(P13489) RecName: Full=Ribonuclease inhibitor; AltName: Full=Rib... 49 4e-04
CU695238_397(CU695238|pid:none) Ralstonia solanacearum strain Mo... 49 5e-04
AB086188_1(AB086188|pid:none) Sus scrofa TLR7 mRNA for Toll-like... 49 5e-04
FN357295_22(FN357295|pid:none) Schistosoma mansoni genome sequen... 49 5e-04
AC137827_8(AC137827|pid:none) Medicago truncatula clone mth2-20g... 49 5e-04
CP000087_895(CP000087|pid:none) Rickettsia bellii RML369-C, comp... 49 5e-04
BC124387_1(BC124387|pid:none) Danio rerio si:ch211-234g24.1, mRN... 49 7e-04
CP000685_3225(CP000685|pid:none) Flavobacterium johnsoniae UW101... 49 7e-04
BC141792_1(BC141792|pid:none) Danio rerio si:ch211-234g24.1, mRN... 49 7e-04
BC098927_1(BC098927|pid:none) Rattus norvegicus similar to chrom... 49 7e-04
BT059375_1(BT059375|pid:none) Salmo salar clone ssal-rgf-529-208... 48 9e-04
CP000684_3(CP000684|pid:none) Rickettsia massiliae MTU5 plasmid ... 48 9e-04
AY154460_1(AY154460|pid:none) Homo sapiens NALP5 (NALP5) mRNA, c... 48 9e-04
(P59047) RecName: Full=NACHT, LRR and PYD domains-containing pro... 48 9e-04
AK029938_1(AK029938|pid:none) Mus musculus adult male testis cDN... 48 0.001
AY596199_1(AY596199|pid:none) Mus musculus NALP-iota (Nalp-iota)... 47 0.002
AC087553_6(AC087553|pid:none) Oryza sativa (japonica cultivar-gr... 47 0.002
AC116986_64(AC116986|pid:none) Dictyostelium discoideum chromoso... 47 0.002
AF111169_4(AF111169|pid:none) Homo sapiens chromosome 14 BAC con... 47 0.002
AK223253_1(AK223253|pid:none) Homo sapiens mRNA for NACHT, leuci... 47 0.002
AK025952_1(AK025952|pid:none) Homo sapiens cDNA: FLJ22299 fis, c... 47 0.002
DQ333222_1(DQ333222|pid:none) Sus scrofa toll-like receptor 7 (T... 47 0.002
CP001612_655(CP001612|pid:none) Rickettsia africae ESF-5, comple... 47 0.002
AY596195_1(AY596195|pid:none) Mus musculus NALP-beta (Nalp-beta)... 47 0.002
AC005757_1(AC005757|pid:none) Homo sapiens chromosome 19, cosmid... 47 0.002
BC001039_1(BC001039|pid:none) Homo sapiens NLR family, pyrin dom... 47 0.002
(O75864) RecName: Full=Leucine-rich repeat-containing protein 68; 47 0.002
AK000784_1(AK000784|pid:none) Homo sapiens cDNA FLJ20777 fis, cl... 47 0.002
AK302989_1(AK302989|pid:none) Homo sapiens cDNA FLJ53440 complet... 47 0.002
AE017354_1919(AE017354|pid:none) Legionella pneumophila subsp. p... 47 0.003
CU914168_1294(CU914168|pid:none) Ralstonia solanacearum strain I... 47 0.003
AK220210_1(AK220210|pid:none) Mus musculus mRNA for mFLJ00359 pr... 47 0.003
CP000080_288(CP000080|pid:none) Leishmania major strain Friedlin... 46 0.003
AB104529_1(AB104529|pid:none) Pisum sativum LKA mRNA for brassin... 46 0.003
AM485540_1(AM485540|pid:none) Vitis vinifera contig VV78X111537.... 46 0.003
BC153283_1(BC153283|pid:none) Bos taurus chromosome 1 open readi... 46 0.004
EU183367_1(EU183367|pid:none) Branchiostoma japonicum isolate lj... 46 0.004
CR954209_93(CR954209|pid:none) Ostreococcus tauri strain OTTH059... 45 0.006
CR628336_1944(CR628336|pid:none) Legionella pneumophila str. Par... 45 0.006
(Q8N4P6) RecName: Full=Leucine-rich repeat-containing protein C1... 45 0.006
AM494967_16(AM494967|pid:none) Leishmania braziliensis chromosom... 45 0.006
AY160328_1(AY160328|pid:none) Mus spretus NOD2 (Nod2) gene, exon... 45 0.006
DQ060248_1(DQ060248|pid:none) Danio rerio CARD15 mRNA, partial c... 45 0.006
AY160388_1(AY160388|pid:none) Mus musculus SM/J NOD2 (Nod2) gene... 45 0.008
(Q9DGB6) RecName: Full=Toll-like receptor 2 type-2; Flags: Precu... 45 0.008
AY160258_1(AY160258|pid:none) Mus musculus domesticus WSB/Ei NOD... 45 0.008
FJ915370_1(FJ915370|pid:none) Gallus gallus isolate 793 TLR2B ge... 45 0.008
AK089843_1(AK089843|pid:none) Mus musculus activated spleen cDNA... 45 0.008
AY160308_1(AY160308|pid:none) Mus musculus FL/1Re NOD2 (Nod2) ge... 45 0.008
BC044774_1(BC044774|pid:none) Mus musculus nucleotide-binding ol... 45 0.008
AY160288_1(AY160288|pid:none) Mus musculus SOD1/Ei NOD2 (Nod2) g... 45 0.008
CU914166_99(CU914166|pid:none) Ralstonia solanacearum strain IPO... 45 0.008
AB194981_1(AB194981|pid:none) Nicotiana tabacum NtTSK mRNA for T... 45 0.008
CP001334_49(CP001334|pid:none) Micromonas sp. RCC299 chromosome ... 45 0.008
AY160338_1(AY160338|pid:none) Mus musculus SWR/J NOD2 (Nod2) gen... 45 0.008
AY160238_1(AY160238|pid:none) Mus musculus musculus PWK/Ph NOD2 ... 45 0.010
CP000053_112(CP000053|pid:none) Rickettsia felis URRWXCal2, comp... 45 0.010
AB178025_1(AB178025|pid:none) Ralstonia solanacearum lrpH gene f... 45 0.010
AC131455_8(AC131455|pid:none) Medicago truncatula clone mth1-42h... 45 0.010
AM494949_70(AM494949|pid:none) Leishmania braziliensis chromosom... 45 0.010
AC155342_19(AC155342|pid:none) Brassica rapa subsp. pekinensis c... 45 0.010
AE017342_11(AE017342|pid:none) Cryptococcus neoformans var. neof... 45 0.010
(Q6B966) RecName: Full=NACHT, LRR and PYD domains-containing pro... 45 0.010
CR954203_353(CR954203|pid:none) Ostreococcus tauri strain OTTH05... 45 0.010
(Q8K3Z0) RecName: Full=Nucleotide-binding oligomerization domain... 45 0.010
AM467999_1(AM467999|pid:none) Vitis vinifera contig VV78X039958.... 45 0.010
AK292681_1(AK292681|pid:none) Homo sapiens cDNA FLJ75133 complet... 45 0.010
BC092769_1(BC092769|pid:none) Danio rerio zgc:110171, mRNA (cDNA... 44 0.013
AF298547_1(AF298547|pid:none) Homo sapiens nucleotide-binding si... 44 0.013
(Q86W25) RecName: Full=NACHT, LRR and PYD domains-containing pro... 44 0.013
CR628337_2333(CR628337|pid:none) Legionella pneumophila str. Len... 44 0.013
CR847504_2(CR847504|pid:none) Zebrafish DNA sequence from clone ... 44 0.013
AC146875_5(AC146875|pid:none) Brassica rapa clone BAC KBrH117M18... 44 0.013
AL646053_915(AL646053|pid:none) Ralstonia solanacearum GMI1000 m... 44 0.013
EF560217_1(EF560217|pid:none) Capsicum frutescens putative recep... 44 0.013
AC091701_41(AC091701|pid:none) Trypanosoma brucei chromosome 8 c... 44 0.013
CT005268_162(CT005268|pid:none) Leishmania major strain Friedlin... 44 0.017
CP000849_1020(CP000849|pid:none) Rickettsia bellii OSU 85-389, c... 44 0.017
CP000087_439(CP000087|pid:none) Rickettsia bellii RML369-C, comp... 44 0.017
(Q66X19) RecName: Full=NACHT, LRR and PYD domains-containing pro... 44 0.017
BC155123_1(BC155123|pid:none) Danio rerio zgc:174178, mRNA (cDNA... 44 0.017
AC139170_24(AC139170|pid:none) Oryza sativa (japonica cultivar-g... 44 0.017
AC013353_9(AC013353|pid:none) Trypanosoma brucei chromosome 6 cl... 44 0.017
BC152582_1(BC152582|pid:none) Danio rerio zgc:110171, mRNA (cDNA... 44 0.017
AP004095_7(AP004095|pid:none) Oryza sativa Japonica Group genomi... 44 0.022
AK027414_1(AK027414|pid:none) Homo sapiens cDNA FLJ14508 fis, cl... 44 0.022
CP001102_1036(CP001102|pid:none) Candidatus Amoebophilus asiatic... 44 0.022
AK136247_1(AK136247|pid:none) Mus musculus in vitro fertilized e... 44 0.022
AF386991_1(AF386991|pid:none) Arabidopsis thaliana Unknown prote... 44 0.022
AM999887_227(AM999887|pid:none) Wolbachia endosymbiont of Culex ... 44 0.022
AF360339_1(AF360339|pid:none) Arabidopsis thaliana unknown prote... 44 0.022
(Q86WI3) RecName: Full=Protein NLRC5; AltName: Full=Nucleotide-b... 44 0.022
FJ461780_23(FJ461780|pid:none) Arabidopsis arenosa clone AaFLC_B... 44 0.022
BC063566_1(BC063566|pid:none) Homo sapiens NLR family, CARD doma... 44 0.022
AY142631_1(AY142631|pid:none) Arabidopsis thaliana unknown prote... 44 0.022
AP008209_1393(AP008209|pid:none) Oryza sativa (japonica cultivar... 43 0.029
AB195466_1(AB195466|pid:none) Sus scrofa Nod2 mRNA for nucleotid... 43 0.029
DQ216048_1(DQ216048|pid:none) Taeniopygia guttata clone 0061P002... 43 0.029
BC154245_1(BC154245|pid:none) Danio rerio zgc:174180, mRNA (cDNA... 43 0.029
CU694393_437(CU694393|pid:none) Ralstonia solanacearum strain Mo... 43 0.038
AE014134_1176(AE014134|pid:none) Drosophila melanogaster chromos... 43 0.038
AK099404_1(AK099404|pid:none) Oryza sativa Japonica Group cDNA c... 43 0.038
CR855215_4(CR855215|pid:none) Oryza sativa genomic DNA, chromoso... 43 0.038
CP000685_1183(CP000685|pid:none) Flavobacterium johnsoniae UW101... 43 0.038
AC079678_3(AC079678|pid:none) Arabidopsis thaliana chromosome 1 ... 43 0.038
AB178024_1(AB178024|pid:none) Ralstonia solanacearum lrpG gene f... 43 0.038
CP001324_540(CP001324|pid:none) Micromonas sp. RCC299 chromosome... 43 0.038
CP001160_442(CP001160|pid:none) Thalassiosira pseudonana CCMP133... 43 0.038
AE014134_1175(AE014134|pid:none) Drosophila melanogaster chromos... 43 0.038
AC116668_42(AC116668|pid:none) Trypanosoma brucei chromosome 5 c... 43 0.038
BT041398_1(BT041398|pid:none) Zea mays full-length cDNA clone ZM... 42 0.049
AP008208_694(AP008208|pid:none) Oryza sativa (japonica cultivar-... 42 0.049
CU914168_1487(CU914168|pid:none) Ralstonia solanacearum strain I... 42 0.049
AC020579_14(AC020579|pid:none) Arabidopsis thaliana chromosome 1... 42 0.049
CP000939_1903(CP000939|pid:none) Clostridium botulinum B1 str. O... 42 0.049
EU643483_23(EU643483|pid:none) Adineta vaga clone Av180_A AIG1-l... 42 0.049
CP000087_408(CP000087|pid:none) Rickettsia bellii RML369-C, comp... 42 0.049
AC079678_1(AC079678|pid:none) Arabidopsis thaliana chromosome 1 ... 42 0.049
AM411448_1(AM411448|pid:none) Solanum tuberosum subsp. tuberosum... 42 0.049
AE017354_2353(AE017354|pid:none) Legionella pneumophila subsp. p... 42 0.064
FN357799_1(FN357799|pid:none) Schistosoma mansoni genome sequenc... 42 0.064
CP000849_1055(CP000849|pid:none) Rickettsia bellii OSU 85-389, c... 42 0.064
AF285581_1(AF285581|pid:none) Mus musculus ribonuclease/angiogen... 42 0.064
CT009716_2(CT009716|pid:none) Zebrafish DNA sequence from clone ... 42 0.064
AY596194_1(AY596194|pid:none) Mus musculus NALP-alpha (Nalp-alph... 42 0.084
AC006604_2(AC006604|pid:none) Caenorhabditis elegans cosmid C07F... 42 0.084
AK098974_1(AK098974|pid:none) Oryza sativa Japonica Group cDNA c... 42 0.084
CP000033_1642(CP000033|pid:none) Lactobacillus acidophilus NCFM,... 42 0.084
FJ687851_1(FJ687851|pid:none) Drosophila melanogaster strain GN0... 42 0.084
FJ687798_1(FJ687798|pid:none) Drosophila melanogaster strain m63... 42 0.084
BC120833_1(BC120833|pid:none) Mus musculus NLR family, pyrin dom... 42 0.084
AF348166_1(AF348166|pid:none) Caenorhabditis elegans Toll-like r... 42 0.084
AM920430_126(AM920430|pid:none) Penicillium chrysogenum Wisconsi... 41 0.11
BT071918_1(BT071918|pid:none) Salmo salar clone ssal-rgf-503-335... 41 0.11
AM478694_4(AM478694|pid:none) Vitis vinifera contig VV78X048019.... 41 0.11
AF052427_4(AF052427|pid:none) Trypanosoma cruzi cosmid 2i15 NPK-... 41 0.11
AK049352_1(AK049352|pid:none) Mus musculus ES cells cDNA, RIKEN ... 41 0.11
AB384760_1(AB384760|pid:none) Synthetic construct DNA, clone: pF... 41 0.11
BC098479_1(BC098479|pid:none) Mus musculus NLR family, pyrin dom... 41 0.11
AK241418_1(AK241418|pid:none) Oryza sativa Japonica Group cDNA, ... 41 0.14
T15864(T15864)hypothetical protein C56E6.6 - Caenorhabditis eleg... 41 0.14
AB234024_1(AB234024|pid:none) Paralichthys olivaceus TLR9 gene f... 41 0.14
AP005966_17(AP005966|pid:none) Oryza sativa Japonica Group genom... 41 0.14
FM242711_2012(FM242711|pid:none) Listeria monocytogenes Clip8145... 41 0.14
AC146681_18(AC146681|pid:none) Medicago truncatula clone mth2-77... 41 0.14
CP001130_646(CP001130|pid:none) Hydrogenobaculum sp. Y04AAS1, co... 41 0.14
AK228463_1(AK228463|pid:none) Arabidopsis thaliana mRNA for rece... 41 0.14
CP000034_1549(CP000034|pid:none) Shigella dysenteriae Sd197, com... 40 0.19
AC169177_15(AC169177|pid:none) Medicago truncatula chromosome 7 ... 40 0.19
(Q6R2J8) RecName: Full=Protein STRUBBELIG-RECEPTOR FAMILY 8; Alt... 40 0.19
FN357601_4(FN357601|pid:none) Schistosoma mansoni genome sequenc... 40 0.19
(Q8Y3L4) RecName: Full=Internalin-J; Flags: Precursor; &AD1427(... 40 0.19
CP001326_666(CP001326|pid:none) Micromonas sp. RCC299 chromosome... 40 0.19
AE005176_852(AE005176|pid:none) Lactococcus lactis subsp. lactis... 40 0.19
(Q6T752) RecName: Full=Toll-like receptor 2; AltName: CD_antigen... 40 0.19
(Q5JU00) RecName: Full=T-complex-associated testis-expressed pro... 40 0.24
(Q4R642) RecName: Full=T-complex-associated testis-expressed pro... 40 0.24
AF260819_1(AF260819|pid:none) Plasmodium falciparum CG1 protein ... 40 0.24
CR628337_2326(CR628337|pid:none) Legionella pneumophila str. Len... 40 0.24
BC163735_1(BC163735|pid:none) Danio rerio zgc:194906, mRNA (cDNA... 40 0.24
CP000869_365(CP000869|pid:none) Burkholderia multivorans ATCC 17... 40 0.24
AY168968_1(AY168968|pid:none) Homo sapiens PAAD- and NACHT-conta... 40 0.24
AX320147_1(AX320147|pid:none) Sequence 15 from Patent WO0183753. 40 0.24
AP005849_13(AP005849|pid:none) Oryza sativa Japonica Group genom... 40 0.24
AK090621_1(AK090621|pid:none) Homo sapiens cDNA FLJ33302 fis, cl... 40 0.24
BX571966_1469(BX571966|pid:none) Burkholderia pseudomallei strai... 40 0.24
AM920428_676(AM920428|pid:none) Penicillium chrysogenum Wisconsi... 40 0.24
CP000573_1939(CP000573|pid:none) Burkholderia pseudomallei 1106a... 40 0.24
CR954205_372(CR954205|pid:none) Ostreococcus tauri strain OTTH05... 40 0.24
AB169208_1(AB169208|pid:none) Macaca fascicularis testis cDNA, c... 40 0.24
AF143860_1(AF143860|pid:none) Drosophila melanogaster RanGAP (Sd... 40 0.24
FN313824_1(FN313824|pid:none) Schistosoma japonicum isolate Anhu... 40 0.24
CT573072_129(CT573072|pid:none) Kuenenia stuttgartiensis genome ... 40 0.32
EU869501_2(EU869501|pid:none) Gasterosteus aculeatus isolate SCW... 40 0.32
BC163628_1(BC163628|pid:none) Danio rerio toll-like receptor 9, ... 40 0.32
AB060637_1(AB060637|pid:none) Elaphe quadrivirgata mRNA for phos... 40 0.32
AB109215_1(AB109215|pid:none) Hordeum vulgare BRI1 gene for puta... 40 0.32
AB088206_1(AB088206|pid:none) Hordeum vulgare BRI1 mRNA for puta... 40 0.32
AL606804_2(AL606804|pid:none) Human DNA sequence from clone RP11... 40 0.32
Z79598_2(Z79598|pid:none) Caenorhabditis elegans Cosmid C44H4, c... 40 0.32
AY092033_1(AY092033|pid:none) Homo sapiens NALP3 intermediate is... 40 0.32
CP000348_1167(CP000348|pid:none) Leptospira borgpetersenii serov... 39 0.42
CP000962_2023(CP000962|pid:none) Clostridium botulinum A3 str. L... 39 0.42
BC074479_1(BC074479|pid:none) Xenopus laevis MGC84783 protein, m... 39 0.42
AP004739_6(AP004739|pid:none) Oryza sativa Japonica Group genomi... 39 0.42
AC004238_16(AC004238|pid:none) Arabidopsis thaliana chromosome 2... 39 0.42
AM432073_2(AM432073|pid:none) Vitis vinifera contig VV78X050205.... 39 0.42
AX255846_1(AX255846|pid:none) Sequence 4 from Patent WO0170987. 39 0.42
AB234023_1(AB234023|pid:none) Paralichthys olivaceus TLR9 mRNA f... 39 0.42
CU914166_705(CU914166|pid:none) Ralstonia solanacearum strain IP... 39 0.42
AY808349_1(AY808349|pid:none) Schistosoma japonicum SJCHGC05568 ... 39 0.42
CP000698_752(CP000698|pid:none) Geobacter uraniireducens Rf4, co... 39 0.54
AF246990_1(AF246990|pid:none) Chlamydomonas reinhardtii flagella... 39 0.54
AP005473_12(AP005473|pid:none) Oryza sativa Japonica Group genom... 39 0.54
CP000113_3954(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 39 0.54
BC123070_1(BC123070|pid:none) Xenopus tropicalis cDNA clone IMAG... 39 0.54
EU869512_2(EU869512|pid:none) Gasterosteus aculeatus isolate GET... 39 0.54
AB019228_2(AB019228|pid:none) Arabidopsis thaliana genomic DNA, ... 39 0.54
AK073838_1(AK073838|pid:none) Oryza sativa Japonica Group cDNA c... 39 0.54
AC148304_20(AC148304|pid:none) Medicago truncatula clone mth2-21... 39 0.54
CP000407_255(CP000407|pid:none) Streptococcus suis 05ZYH33, comp... 39 0.54
BC156633_1(BC156633|pid:none) Synthetic construct Mus musculus c... 39 0.54
CP000001_447(CP000001|pid:none) Bacillus cereus E33L, complete g... 39 0.54
(Q0WR59) RecName: Full=Probable inactive receptor kinase At5g100... 39 0.54
CP000542_4890(CP000542|pid:none) Verminephrobacter eiseniae EF01... 39 0.54
(Q96CN5) RecName: Full=Leucine-rich repeat-containing protein 45... 39 0.54
AK064434_1(AK064434|pid:none) Oryza sativa Japonica Group cDNA c... 39 0.54
FB916187_1(FB916187|pid:none) Sequence 135460 from Patent WO2008... 39 0.54
AP000366_23(AP000366|pid:none) Oryza sativa Japonica Group genom... 39 0.54
CU695240_206(CU695240|pid:none) Ralstonia solanacearum strain Mo... 39 0.71
BX539307_2(BX539307|pid:none) Zebrafish DNA sequence from clone ... 39 0.71
AY518759_1(AY518759|pid:none) Bos indicus caspase recruitment do... 39 0.71
BC107955_1(BC107955|pid:none) Danio rerio toll-like receptor 3, ... 39 0.71
AP008216_747(AP008216|pid:none) Oryza sativa (japonica cultivar-... 39 0.71
AC144737_10(AC144737|pid:none) Oryza sativa (japonica cultivar-g... 39 0.71
BX927329_2(BX927329|pid:none) Zebrafish DNA sequence from clone ... 39 0.71
EF517229_1(EF517229|pid:none) Solanum chacoense receptor-like ki... 39 0.71
CP000150_844(CP000150|pid:none) Burkholderia sp. 383 chromosome ... 39 0.71
AL080282_10(AL080282|pid:none) Arabidopsis thaliana DNA chromoso... 39 0.71
(Q6E804) RecName: Full=Nucleotide-binding oligomerization domain... 39 0.71
EU869500_2(EU869500|pid:none) Gasterosteus aculeatus isolate SCW... 39 0.71
AF321233_1(AF321233|pid:none) Mus musculus strain 129/SvJ chromo... 39 0.71
AJ303349_4(AJ303349|pid:none) Capsella rubella ORF1, ORF2, ORF3,... 38 0.93
AM453902_1(AM453902|pid:none) Vitis vinifera contig VV78X005876.... 38 0.93
EU682083_1(EU682083|pid:none) Danio rerio isolate SDDLTLR9710 to... 38 0.93
CP000863_1911(CP000863|pid:none) Acinetobacter baumannii ACICU, ... 38 0.93
BC161940_1(BC161940|pid:none) Rattus norvegicus similar to leuci... 38 0.93
AL683873_3(AL683873|pid:none) Mouse DNA sequence from clone RP23... 38 0.93
EU344968_1(EU344968|pid:none) Macaca mulatta NLR family pyrin do... 38 0.93
CP001407_472(CP001407|pid:none) Bacillus cereus 03BB102, complet... 38 0.93
(Q7RTR0) RecName: Full=NACHT, LRR and PYD domains-containing pro... 38 0.93
CP000685_1182(CP000685|pid:none) Flavobacterium johnsoniae UW101... 38 0.93
AB109396_1(AB109396|pid:none) Paralichthys olivaceus tlr3 gene f... 38 0.93
AY663649_1(AY663649|pid:none) Ctenopharyngodon idella glycoprote... 38 1.2
CU928175_35(CU928175|pid:none) Zygosaccharomyces rouxii strain C... 38 1.2
(Q587K4) RecName: Full=Uncharacterized protein C6orf154 homolog;... 38 1.2
AY055124_1(AY055124|pid:none) Zea mays fasciated ear2 (fea2) mRN... 38 1.2
T23395(T23395) hypothetical protein K07A12.2 - Caenorhabditis el... 38 1.2
AP007151_219(AP007151|pid:none) Aspergillus oryzae RIB40 genomic... 38 1.2
AB109394_1(AB109394|pid:none) Paralichthys olivaceus tlr3 mRNA f... 38 1.2
AE014296_969(AE014296|pid:none) Drosophila melanogaster chromoso... 38 1.2
BT042749_1(BT042749|pid:none) Zea mays full-length cDNA clone ZM... 38 1.2
AP003915_2(AP003915|pid:none) Oryza sativa Japonica Group genomi... 38 1.2
A43318(A43318;S28464) connectin precursor - fruit fly (Drosophil... 38 1.2
EU869519_2(EU869519|pid:none) Gasterosteus aculeatus isolate PRI... 38 1.2
A49121(A49121) cell-surface molecule connectin - fruit fly (Dros... 38 1.2
BC147714_1(BC147714|pid:none) Mus musculus gene model 88, (NCBI)... 38 1.2
AB306533_1(AB306533|pid:none) Marchantia polymorpha MpRLK11 mRNA... 38 1.2
AL606604_7(AL606604|pid:none) Oryza sativa genomic DNA, chromoso... 38 1.2
FN392322_748(FN392322|pid:none) Pichia pastoris GS115 chromosome... 38 1.2
EU954561_1(EU954561|pid:none) Zea mays clone 1470172 regulatory ... 38 1.2
AB445643_1(AB445643|pid:none) Macaca fascicularis TLR4 mRNA for ... 38 1.2
(Q8GUQ5) RecName: Full=Brassinosteroid LRR receptor kinase; ... 38 1.2
AC005967_14(AC005967|pid:none) Arabidopsis thaliana chromosome 2... 38 1.2
BX901980_1(BX901980|pid:none) Zebrafish DNA sequence from clone ... 38 1.2
EF471736_1(EF471736|pid:none) Solanum pimpinellifolium BRI1 prot... 37 1.6
AF053994_1(AF053994|pid:none) Lycopersicon esculentum Hcr2-0A (H... 37 1.6
AM443311_1(AM443311|pid:none) Vitis vinifera contig VV78X111487.... 37 1.6
CP000087_915(CP000087|pid:none) Rickettsia bellii RML369-C, comp... 37 1.6
AP004553_15(AP004553|pid:none) Oryza sativa Japonica Group genom... 37 1.6
T34342(T34342) hypothetical protein T08H4.1 - Caenorhabditis ele... 37 1.6
CP000411_382(CP000411|pid:none) Oenococcus oeni PSU-1, complete ... 37 1.6
CR954204_218(CR954204|pid:none) Ostreococcus tauri strain OTTH05... 37 1.6
AM270331_4(AM270331|pid:none) Aspergillus niger contig An15c0040... 37 1.6
AC140031_16(AC140031|pid:none) Medicago truncatula clone mth2-24... 37 1.6
AL606804_3(AL606804|pid:none) Human DNA sequence from clone RP11... 37 1.6
(Q8L899) RecName: Full=Systemin receptor SR160; EC=2.7.... 37 1.6
A49674(A49674) flightless-I homolog - human (fragment) &U01184_... 37 2.1
CU928160_1962(CU928160|pid:none) Escherichia coli IAI1 chromosom... 37 2.1
AC006569_23(AC006569|pid:none) Arabidopsis thaliana chromosome 2... 37 2.1
AK123817_1(AK123817|pid:none) Homo sapiens cDNA FLJ41823 fis, cl... 37 2.1
EF623823_1(EF623823|pid:none) Nicotiana tabacum brassinosteroid ... 37 2.1
AF053996_1(AF053996|pid:none) Lycopersicon pimpinellifolium Hcr2... 37 2.1
(Q13045) RecName: Full=Protein flightless-1 homolog; &BC025300_... 37 2.1
BX908798_48(BX908798|pid:none) Parachlamydia-related symbiont UW... 37 2.1
AL844506_94(AL844506|pid:none) Plasmodium falciparum 3D7 chromos... 37 2.1
AB208864_1(AB208864|pid:none) Homo sapiens mRNA for flightless I... 37 2.1
AP001313_12(AP001313|pid:none) Arabidopsis thaliana genomic DNA,... 37 2.1
AK228987_1(AK228987|pid:none) Arabidopsis thaliana mRNA for hypo... 37 2.1
CR861279_1(CR861279|pid:none) Pongo abelii mRNA; cDNA DKFZp459O0... 37 2.1
EU256335_1(EU256335|pid:none) Dentex tumifrons toll-like recepto... 37 2.7
(Q54AX5) RecName: Full=Leucine-rich repeat protein lrrA; &AF200... 37 2.7
FJ198048_1(FJ198048|pid:none) Gossypium barbadense receptor kina... 37 2.7
AY392087_1(AY392087|pid:none) Sus scrofa toll-like receptor 2 mR... 37 2.7
AF030694_10(AF030694|pid:none) Plasmodium falciparum strain Dd2 ... 37 2.7
BC134854_1(BC134854|pid:none) Danio rerio si:ch211-81a5.5, mRNA ... 37 2.7
AB109393_1(AB109393|pid:none) Paralichthys olivaceus tlr2 mRNA f... 37 2.7
CP000036_992(CP000036|pid:none) Shigella boydii Sb227, complete ... 37 2.7
AB109395_1(AB109395|pid:none) Paralichthys olivaceus tlr2 gene f... 37 2.7
AY392088_1(AY392088|pid:none) Sus scrofa toll-like receptor 2 mu... 37 2.7
AK176593_1(AK176593|pid:none) Arabidopsis thaliana mRNA for puta... 37 2.7
AP009240_2155(AP009240|pid:none) Escherichia coli SE11 DNA, comp... 37 2.7
CU651637_1834(CU651637|pid:none) Escherichia coli LF82 chromosom... 37 2.7
AK243503_1(AK243503|pid:none) Oryza sativa Japonica Group cDNA, ... 37 2.7
AC1533(AC1533) surface protein (LPXTG motif) [imported] - Lister... 37 2.7
EU073586_1(EU073586|pid:none) Anopheles arabiensis isolate AR36A... 37 2.7
CP000247_1841(CP000247|pid:none) Escherichia coli 536, complete ... 37 2.7
CR628336_1010(CR628336|pid:none) Legionella pneumophila str. Par... 37 2.7
AE014297_2427(AE014297|pid:none) Drosophila melanogaster chromos... 36 3.5
FN392319_661(FN392319|pid:none) Pichia pastoris GS115 chromosome... 36 3.5
CR382138_442(CR382138|pid:none) Debaryomyces hansenii strain CBS... 36 3.5
CP000011_774(CP000011|pid:none) Burkholderia mallei ATCC 23344 c... 36 3.5
CP000932_813(CP000932|pid:none) Campylobacter lari RM2100, compl... 36 3.5
DQ355952_3(DQ355952|pid:none) Oryza sativa (indica cultivar-grou... 36 3.5
AK090431_1(AK090431|pid:none) Homo sapiens mRNA for FLJ00348 pro... 36 3.5
AK315003_1(AK315003|pid:none) Homo sapiens cDNA, FLJ95931, highl... 36 3.5
BX664606_2(BX664606|pid:none) Zebrafish DNA sequence from clone ... 36 3.5
AE014075_2274(AE014075|pid:none) Escherichia coli CFT073, comple... 36 3.5
AC023279_25(AC023279|pid:none) Genomic sequence for Arabidopsis ... 36 3.5
AC156431_1(AC156431|pid:none) Sequence of TLR14, a F. rubripes t... 36 3.5
AF442488_1(AF442488|pid:none) Homo sapiens NALP4 mRNA, complete ... 36 3.5
AE017354_2345(AE017354|pid:none) Legionella pneumophila subsp. p... 36 3.5
AX320139_1(AX320139|pid:none) Sequence 7 from Patent WO0183753. 36 3.5
CP000675_1037(CP000675|pid:none) Legionella pneumophila str. Cor... 36 3.5
AJ720504_1(AJ720504|pid:none) Gallus gallus mRNA for hypothetica... 36 3.5
AB012245_18(AB012245|pid:none) Arabidopsis thaliana genomic DNA,... 36 3.5
EF396237_1(EF396237|pid:none) Nicotiana benthamiana RAN GTPase-a... 36 3.5
AY358415_1(AY358415|pid:none) Homo sapiens clone DNA66674 KMQK69... 36 3.5
AP008217_1316(AP008217|pid:none) Oryza sativa (japonica cultivar... 36 3.5
AP004124_14(AP004124|pid:none) Oryza sativa Japonica Group genom... 36 3.5
AK056688_1(AK056688|pid:none) Homo sapiens cDNA FLJ32126 fis, cl... 36 3.5
EU204936_1(EU204936|pid:none) Macaca mulatta Toll-like receptor ... 36 3.5
CP000083_2251(CP000083|pid:none) Colwellia psychrerythraea 34H, ... 36 3.5
AK176866_1(AK176866|pid:none) Arabidopsis thaliana mRNA for leuc... 36 3.5
AM412317_1945(AM412317|pid:none) Clostridium botulinum A str. AT... 36 4.6
(Q5PP26) RecName: Full=Piriformospora indica-insensitive protein... 36 4.6
FJ915232_1(FJ915232|pid:none) Gallus gallus isolate 714 TLR15 ge... 36 4.6
FJ598057_1(FJ598057|pid:none) Escherichia coli strain 1711-4 fla... 36 4.6
AY663650_1(AY663650|pid:none) Ctenopharyngodon idella glycoprote... 36 4.6
FJ915224_1(FJ915224|pid:none) Gallus gallus isolate 638 TLR15 ge... 36 4.6
FJ915246_1(FJ915246|pid:none) Gallus sonneratii isolate 581 TLR1... 36 4.6
FJ915226_1(FJ915226|pid:none) Gallus gallus isolate 657 TLR15 ge... 36 4.6
AE013599_3503(AE013599|pid:none) Drosophila melanogaster chromos... 36 4.6
FJ915220_1(FJ915220|pid:none) Gallus lafayetii isolate 87 TLR15 ... 36 4.6
CT005267_221(CT005267|pid:none) Leishmania major strain Friedlin... 36 4.6
AM180355_1860(AM180355|pid:none) Clostridium difficile 630 compl... 36 4.6
CR628337_670(CR628337|pid:none) Legionella pneumophila str. Lens... 36 4.6
FJ915225_1(FJ915225|pid:none) Gallus gallus isolate 201 TLR15 ge... 36 4.6
AM502248_238(AM502248|pid:none) Leishmania infantum chromosome 30. 36 4.6
FJ915231_1(FJ915231|pid:none) Gallus gallus isolate 258 TLR15 ge... 36 4.6
AB445642_1(AB445642|pid:none) Pongo pygmaeus TLR4 mRNA for toll-... 36 4.6
(Q12WE6) RecName: Full=Chaperone protein dnaK; AltName: Full=Hea... 36 4.6
FJ915258_1(FJ915258|pid:none) Gallus gallus isolate 562 TLR15 ge... 36 4.6
EU686615_9(EU686615|pid:none) Uncultured marine crenarchaeote SA... 36 4.6
AK299471_1(AK299471|pid:none) Homo sapiens cDNA FLJ50027 complet... 36 4.6
EF471737_1(EF471737|pid:none) Solanum tuberosum BRI1 protein (BR... 36 4.6
AP008971_1197(AP008971|pid:none) Finegoldia magna ATCC 29328 DNA... 36 4.6
EF519345_1(EF519345|pid:none) Anopheles arabiensis isolate Arabi... 36 4.6
FJ915238_1(FJ915238|pid:none) Gallus gallus isolate 809 TLR15 ge... 36 4.6
AC083945_16(AC083945|pid:none) Oryza sativa (japonica cultivar-g... 36 4.6
CP001344_1827(CP001344|pid:none) Cyanothece sp. PCC 7425, comple... 36 4.6
AP003622_10(AP003622|pid:none) Oryza sativa Japonica Group genom... 36 4.6
CP001323_805(CP001323|pid:none) Micromonas sp. RCC299 chromosome... 36 4.6
(P58297) RecName: Full=Flagellar hook-associated protein 2; ... 36 4.6
CU928163_2182(CU928163|pid:none) Escherichia coli UMN026 chromos... 36 4.6
CR382136_748(CR382136|pid:none) Debaryomyces hansenii strain CBS... 35 6.0
AY344810_1(AY344810|pid:none) Anopheles gambiae isolate L3-56 LR... 35 6.0
CP000360_1826(CP000360|pid:none) Acidobacteria bacterium Ellin34... 35 6.0
CP000077_2133(CP000077|pid:none) Sulfolobus acidocaldarius DSM 6... 35 6.0
CU928168_22(CU928168|pid:none) Kluyveromyces thermotolerans stra... 35 6.0
BA000040_3252(BA000040|pid:none) Bradyrhizobium japonicum USDA 1... 35 6.0
AM453535_1(AM453535|pid:none) Vitis vinifera contig VV78X247353.... 35 6.0
CP000102_143(CP000102|pid:none) Methanosphaera stadtmanae DSM 30... 35 6.0
AE017194_606(AE017194|pid:none) Bacillus cereus ATCC 10987, comp... 35 6.0
EU073587_1(EU073587|pid:none) Anopheles arabiensis isolate AR50A... 35 6.0
(Q8CIM1) RecName: Full=Leucine-rich repeat-containing protein 45... 35 6.0
(Q8CDU4) RecName: Full=F-box/LRR-repeat protein 13; AltName: Ful... 35 6.0
AF113614_1(AF113614|pid:none) Cricetulus griseus Toll-like recep... 35 6.0
EU869516_2(EU869516|pid:none) Gasterosteus aculeatus isolate PRI... 35 6.0
CU695238_196(CU695238|pid:none) Ralstonia solanacearum strain Mo... 35 6.0
CP000675_725(CP000675|pid:none) Legionella pneumophila str. Corb... 35 6.0
BC090138_1(BC090138|pid:none) Xenopus tropicalis flightless 1 ho... 35 6.0
BC145291_1(BC145291|pid:none) Mus musculus F-box and leucine-ric... 35 6.0
AF030691_2(AF030691|pid:none) Plasmodium falciparum strain 7G8 C... 35 6.0
(P36495) RecName: Full=Uncharacterized membrane protein ycf78; A... 35 6.0
EU073596_1(EU073596|pid:none) Anopheles arabiensis isolate AR_MA... 35 6.0

>AF388524_1(AF388524|pid:none) Dictyostelium discoideum carmil gene,
complete cds.
Length = 1050

Score = 587 bits (1512), Expect = e-166
Identities = 304/308 (98%), Positives = 305/308 (99%)
Frame = +3

Query: 3 FKSFNFNNYTFNKEQFGYLAEVLKCNSTVEDLSLNNVGLKHDTMPIIATALSSNKNLALT 182
FKSFNFNNYTFNKEQFGYLAEVLKCNSTVEDLSLNNVGLKHDTMPIIATALSSNKNLALT
Sbjct: 213 FKSFNFNNYTFNKEQFGYLAEVLKCNSTVEDLSLNNVGLKHDTMPIIATALSSNKNLALT 272

Query: 183 AIDISNNQIEDKGMTAFSSYVASSLRGIASLDVSNTNCNKAGISVLTNALKKNIKMSSTL 362
AIDISNNQIEDKGMTAFSSYVASSLRGIASLDVSNTNCNKAGISVLTNALKKNIKMSSTL
Sbjct: 273 AIDISNNQIEDKGMTAFSSYVASSLRGIASLDVSNTNCNKAGISVLTNALKKNIKMSSTL 332

Query: 363 SYLNLSGNKMEADGSAGLSSFLASPNTLKTLNISNTTPSMETIVGALVIGCAELKTIDIS 542
SYLNLSGNKMEADGSAGLSSFLASPNTLKTLNISNTTPSMETIVGALVIGCAELKTIDIS
Sbjct: 333 SYLNLSGNKMEADGSAGLSSFLASPNTLKTLNISNTTPSMETIVGALVIGCAELKTIDIS 392

Query: 543 DNKLTKKEVPHLVRFIGASSTLKHFNLSGTKVPVENLKELVVAITSNIYLQDVVLDLKNN 722
DNKLTKKEVPHLVRFIGASSTLKHFNLSGTKVPVENLKELVVAITSNIYLQDVVLDLKNN
Sbjct: 393 DNKLTKKEVPHLVRFIGASSTLKHFNLSGTKVPVENLKELVVAITSNIYLQDVVLDLKNN 452

Query: 723 DLGIAGARMLASLATDKLSNVIYLDVSENDFGDEGVSVICDGFVGNSTIKKLILNGNFKQ 902
DLGIAGARMLASLATDKLSNVIYLDVSENDFGDEGVSVICDGFVGNSTIKKLILNGNFKQ
Sbjct: 453 DLGIAGARMLASLATDKLSNVIYLDVSENDFGDEGVSVICDGFVGNSTIKKLILNGNFKQ 512

Query: 903 SKTXXXPT 926
SKT P+
Sbjct: 513 SKTKSRPS 520

Score = 150 bits (378), Expect = 2e-34
Identities = 98/206 (47%), Positives = 98/206 (47%)
Frame = +2

Query: 923 YEKITIGLDSVFKDLILEESQAQNEASGATPIPDXXXXXXXXXXXXXXXXXXXXXXXXXX 1102
YEKITIGLDSVFKDLILEESQAQNEASGATPIPD
Sbjct: 830 YEKITIGLDSVFKDLILEESQAQNEASGATPIPDSPVPTRSPQPTSPPITPQPTPTTNVP 889

Query: 1103 XXXXXXXGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKFGAKLSANSAVAEAIARNM 1282
G KFGAKLSANSAVAEAIARNM
Sbjct: 890 PVTAPRTGAAAPLKPANPPPVSTTTTPPVSTTPKPTQPVSKFGAKLSANSAVAEAIARNM 949

Query: 1283 GGGAPPIRKXXXXXXXXXXXXXXXXXXXLKSKPVVAPRXXXXXXXXXXXXXXXXXXXXXX 1462
GGGAPPIRK LKSKPVVAPR
Sbjct: 950 GGGAPPIRKPVAPEPEPEPVTPTKDVTPLKSKPVVAPRSTPTTSTPTKTPVKKPSGPSVP 1009

Query: 1463 XXLSDAPESDSAELTHVTASRPHIAS 1540
LSDAPESDSAELTHVTASRPHIAS
Sbjct: 1010 GSLSDAPESDSAELTHVTASRPHIAS 1035

Score = 56.6 bits (135), Expect = 3e-06
Identities = 48/212 (22%), Positives = 95/212 (44%), Gaps = 11/212 (5%)
Frame = +3

Query: 6 KSFNFNNYTFNKEQFGYLAEVLKCNSTVEDLSLNNVGLKHDTMPIIATALSSNKNLALTA 185
K+ + ++ K++ +L + +ST++ +L+ + + + + A++SN L
Sbjct: 387 KTIDISDNKLTKKEVPHLVRFIGASSTLKHFNLSGTKVPVENLKELVVAITSNIYLQDVV 446

Query: 186 IDISNNQIEDKGMTAFSSYVASSLRGIASLDVSNTNCNKAGISVLTNALKKNIKMSSTLS 365
+D+ NN + G +S L + LDVS + G+SV+ + N ST+
Sbjct: 447 LDLKNNDLGIAGARMLASLATDKLSNVIYLDVSENDFGDEGVSVICDGFVGN----STIK 502

Query: 366 YLNLSGN------KMEADGSAGLSSFLASPNTLKTLN--ISNTTPSMETIVGALVIGCA- 518
L L+GN K + S L S L+TL+ + N+ ++ + +L+ A
Sbjct: 503 KLILNGNFKQSKTKSRPSAIESVISLLESECPLETLHMTVGNSKSPLKADILSLIYSLAT 562

Query: 519 --ELKTIDISDNKLTKKEVPHLVRFIGASSTL 608
L +DIS +++ K L + + + TL
Sbjct: 563 NSSLLELDISGHQMGPKGAIGLGKALQTNKTL 594

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,998,443,586
Number of extensions: 35082558
Number of successful extensions: 97313
Number of sequences better than 10.0: 532
Number of HSP's gapped: 96188
Number of HSP's successfully gapped: 804
Length of query: 542
Length of database: 1,040,966,779
Length adjustment: 134
Effective length of query: 408
Effective length of database: 611,592,589
Effective search space: 249529776312
Effective search space used: 249529776312
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.73 gvh: 0.40 alm: 0.35 top: 0.53 tms: 0.00 mit: 0.18 mip: 0.00
nuc: 0.14 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
40.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: mitochondrial

>> prediction for Contig-U11404-1 is nuc

VS (DIR, S) 0
VH (FL, L) 6
VF (FL, S) 1
AH (FL, L) 1
AF (FL, S) 0
SL (DIR, L) 2
SS (DIR, S) 0
SH (FL, L) 1
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0