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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U11401-1
Contig ID Contig-U11401-1
Contig update 2002.12.18
Contig sequence 
>Contig-U11401-1 (Contig-U11401-1Q) /CSM_Contig/Contig-U11401-1Q.Seq.d
AAATATATAAATTATTTGTTTTAATTATTTCTTTTTTTTTTATATTTTTT
TATATATTATATTTAAAAATAGATGACCTNTATATTATCAAATTTAAAGA
AAAGGTTTTCTATTAAACCTACAACAATATCAGATATTGTTAATAACAAT
GATGATGAAAGTGAAATTAAACAATTAAATATCAATAGCAATAATAATAA
TAGTAATAATGTTAATAGTCAATTAAAAAAAGTATATAAAAGAAAGAAAT
CTTCAACAGTTGATAGTGATGACGATGATAAAAGTAACCAAAGTAGTGTT
GACGATGACGAGGATGACAATAATTCAAGTGAAGATTCAGGTCAAGAAAT
TGAAAATGTAAAGGGTAAATCTGTAACATTTAAAGAACAACCAAAACCAA
ACAATATGATGGCAAGTAAACAATTATCTGCAGTACCAAAATCAAAAAGA
AAATCAATTATCATTCAACCAACCAATTTGAATCAAACAAATATAGATAC
AACAACCATTAGAAATGATCTAGATAATAATTCATTACCACCAATTCAAA
AGAAAGTACCATTAACTCATTTACAAATTTCTGAAATTTATGCAAATTGT
ATTAAACTATCAACTGAAAATAAAATTAATCAAAAAAATTCATGGACATT
AAAATTAATTGATCATTTTGATGATGTTTTAGAGAATCAACATGCAGGTG
AATCAAATACAACCAATTTTCAAGCGGCATCATGTGTATTGGATGCAAGT
GTAAAGATTTATTCAAATCGTGTAGATTCTGTACATGTTGATACATATAA
GATTTTAGGTGGTTTATCAAGAGCAGAAAGAGAAGAAGTAGCAAATGATG
ATGATGATGATGAAGATAGTAAAGATAAAGAAAATGAAGAAAAAAAAAAT
AAAAATAAAAAGAAAAAGAAAACTGG----------ATTTTACCACCAGA
TATTCATTATGATATTAAAATGTTATCAAGACTATTTAATAAACCAAAAT
GTTCAATTCCACCTATGAGTAAAAGAGAAGAAGTTTTAAGATTCTTAAAT
CCAAAATTAAATAGAAATAATGATGGTGAAGGGAGTGATGATGATGAAGA
TAATGGAAATCAAGATTATGATTTTCCAAATTCTCAAATTCTTCAAGATG
ATTTTAATCCAAATGAAAATATGAATGGTGTTGGTAGAATTAATGATGAT
GAAGGTTATGGAGGAATAGGTGGTTGGGATGACGAAGATGATAGACCTAT
CAATCAAAATAATCTAGTTAATAATAATAATAATAACAATGATGGAATAA
ATATAAACAATGTTGGTGGATTTACATTTGGTTTAAATGGTGGTGTCTTA
ATTGATGAACCAAGAAAAGTTAGTAAAATTGATATCAATTATGCAAGAGT
ATCTAAAAAGATTGATGTTAAATCATTGAAAACTTCTGTTTGGTCAATCA
TTGATTCTGATGATAATAATAATAATAACAATAATAATAATAGTCAAAGA
AATTCAGAAAATATTGATGAATGTAGTTTTGGTTCATTAATTGATGATTT
AAAAGAAGAACAAAATCAATTAAGATTAAATAATAAACCAACAGCTGGTG
AAGTTTCAATTCCTCTTGCTTTTATTTGTGTATTACATCTTGCCAAGAAA
AGAATTTAACATTAAATCAAGNATAATATAAATAATTTCATAATTTCAAA
Gap gap included
Contig length 1690
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 4
Number of EST 6
Link to clone list U11401
List of clone(s) 

est1=CHG432F,1,469
est2=AHI352F,184,711
est3=CHN481F,396,925
est4=SHL518Z,927,1691
est5=AHI352Z,1046,1630
est6=CHG432Z,1050,1690
Translated Amino Acid sequence 
kyinylf*lflfflyffiyyi*k*MTXILSNLKKRFSIKPTTISDIVNNNDDESEIKQLN
INSNNNNSNNVNSQLKKVYKRKKSSTVDSDDDDKSNQSSVDDDEDDNNSSEDSGQEIENV
KGKSVTFKEQPKPNNMMASKQLSAVPKSKRKSIIIQPTNLNQTNIDTTTIRNDLDNNSLP
PIQKKVPLTHLQISEIYANCIKLSTENKINQKNSWTLKLIDHFDDVLENQHAGESNTTNF
QAASCVLDASVKIYSNRVDSVHVDTYKILGGLSRAEREEVANDDDDDEDSKDKENEEKKN
KNKKKKKT---

---ILPPDIHYDIKMLSRLFNKPKCSIPPMSKREEVLRFLNPKLNRNNDGEGSDDDEDNG
NQDYDFPNSQILQDDFNPNENMNGVGRINDDEGYGGIGGWDDEDDRPINQNNLVNNNNNN
NDGININNVGGFTFGLNGGVLIDEPRKVSKIDINYARVSKKIDVKSLKTSVWSIIDSDDN
NNNNNNNNSQRNSENIDECSFGSLIDDLKEEQNQLRLNNKPTAGEVSIPLAFICVLHLAK
KRI*h*ikxninnfiis
Translated Amino Acid sequence (All Frames) 
Frame A:
kyinylf*lflfflyffiyyi*k*MTXILSNLKKRFSIKPTTISDIVNNNDDESEIKQLN
INSNNNNSNNVNSQLKKVYKRKKSSTVDSDDDDKSNQSSVDDDEDDNNSSEDSGQEIENV
KGKSVTFKEQPKPNNMMASKQLSAVPKSKRKSIIIQPTNLNQTNIDTTTIRNDLDNNSLP
PIQKKVPLTHLQISEIYANCIKLSTENKINQKNSWTLKLIDHFDDVLENQHAGESNTTNF
QAASCVLDASVKIYSNRVDSVHVDTYKILGGLSRAEREEVANDDDDDEDSKDKENEEKKN
KNKKKKKT---

---ILPPDIHYDIKMLSRLFNKPKCSIPPMSKREEVLRFLNPKLNRNNDGEGSDDDEDNG
NQDYDFPNSQILQDDFNPNENMNGVGRINDDEGYGGIGGWDDEDDRPINQNNLVNNNNNN
NDGININNVGGFTFGLNGGVLIDEPRKVSKIDINYARVSKKIDVKSLKTSVWSIIDSDDN
NNNNNNNNSQRNSENIDECSFGSLIDDLKEEQNQLRLNNKPTAGEVSIPLAFICVLHLAK
KRI*h*ikxninnfiis

Frame B:
ni*iicfnyffffyiflyiifknr*pxyyqi*rkgfllnlqqyqillitmmmkvklnn*i
siaiiiivimlivn*kkyikernlqqlivmtmikvtkvvltmtrmtiiqvkiqvkklkm*
rvnl*hlknnqnqti*wqvnnylqyqnqkenqlsfnqpi*ikqi*iqqplemi*iiihyh
qfkrkyh*liykflkfmqivlnyqlkiklikkihgh*n*liilmmf*rinmqvnqiqpif
krhhvywmqv*rfiqiv*ilymlihirf*vvyqeqkekk*qmmmmmmkivkikkmkkkki
kikrkrkl---

---fyhqifimilkcyqdylinqnvqfhl*vkekkf*ds*iqn*ieimmvkgvmmmkime
ikimifqilkffkmiliqmki*mvlvelmmmkvmee*vvgmtkmidlsikii*liiiiit
mme*i*tmlvdlhlv*mvvs*lmnqeklvklisimqeylkrlmlnh*kllfgqslilmii
iiitiiiivkeiqkilmnvvlvh*lmi*kknkin*d*iinqqlvkfqfllllfvyyilpr
kefniksxii*iis*fq

Frame C:
iyklfvliisfffiffyilylkiddlyiikfkekvfy*tynniryc**q***k*n*tiky
q*q******c**sikksi*kkeifns****r**k*pk*c*r*rg*q*fk*rfrsrn*kck
g*icni*rttktkqydgk*tiicstkikkkinyhstnqfesnkyrynnh*k*sr**fitt
nskestinsftnf*nlckly*tin*k*n*skkfmdikin*sf**cfrestcr*ikynqfs
sgimcigckckdlfkscrfctc*yi*dfrwfiksrkrrssk******r**r*rk*rkkk*
k*kekenw---

---fttrysl*y*nvikti**tkmfnstye*krrsfkilkskik*k**w*re****r*wk
srl*fskfsnssr*f*sk*kyewcw*n****rlwrnrwlg*rr**tyqsk*ss******q
*wnkykqcwwiyiwfkwwcln**tkks**n*yqlcksi*kd*c*iienfclvnh*f****
***q****skkfrky**m*fwfin**fkrrtksikik**tnsw*sfnsscfylcitscqe
knltlnqx*yk*fhnfk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U11401-1 (Contig-U11401-1Q)
/CSM_Contig/Contig-U11401-1Q.Seq.d
         (1700 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U11401-1 (Contig-U11401-1Q) /CSM_Contig/Conti...  1174  0.0
Contig-U12155-1 (Contig-U12155-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U09784-1 (Contig-U09784-1Q) /CSM_Contig/Conti...    40  0.008
Contig-U01559-1 (Contig-U01559-1Q) /CSM_Contig/Conti...    40  0.008
Contig-U14169-1 (Contig-U14169-1Q) /CSM_Contig/Conti...    38  0.031
Contig-U14073-1 (Contig-U14073-1Q) /CSM_Contig/Conti...    38  0.031
Contig-U13974-1 (Contig-U13974-1Q) /CSM_Contig/Conti...    38  0.031
Contig-U13488-1 (Contig-U13488-1Q) /CSM_Contig/Conti...    38  0.031
Contig-U12810-1 (Contig-U12810-1Q) /CSM_Contig/Conti...    38  0.031
Contig-U11521-1 (Contig-U11521-1Q) /CSM_Contig/Conti...    38  0.031

>Contig-U11401-1 (Contig-U11401-1Q) /CSM_Contig/Contig-U11401-1Q.Seq.d
          Length = 1700

 Score = 1174 bits (592), Expect = 0.0
 Identities = 620/634 (97%)
 Strand = Plus / Plus

                                                                       
Query: 211 gttaatagtcaattnnnnnnngtatataaaagaaagaaatcttcaacagttgatagtgat 270
           ||||||||||||||       |||||||||||||||||||||||||||||||||||||||
Sbjct: 211 gttaatagtcaattaaaaaaagtatataaaagaaagaaatcttcaacagttgatagtgat 270

                                                                       
Query: 271 gacgatgataaaagtaaccaaagtagtgttgacgatgacgaggatgacaataattcaagt 330
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 gacgatgataaaagtaaccaaagtagtgttgacgatgacgaggatgacaataattcaagt 330

                                                                       
Query: 331 gaagattcaggtcaagaaattgaaaatgtaaagggtaaatctgtaacatttaaagaacaa 390
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 gaagattcaggtcaagaaattgaaaatgtaaagggtaaatctgtaacatttaaagaacaa 390

                                                                       
Query: 391 ccaaaaccaaacaatatgatggcaagtaaacaattatctgcagtaccaaaatcaaaaaga 450
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 ccaaaaccaaacaatatgatggcaagtaaacaattatctgcagtaccaaaatcaaaaaga 450

                                                                       
Query: 451 aaatcaattatcattcaaccaaccaatttgaatcaaacaaatatagatacaacaaccatt 510
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 aaatcaattatcattcaaccaaccaatttgaatcaaacaaatatagatacaacaaccatt 510

                                                                       
Query: 511 agaaatgatctagataataattcattaccaccaattcaaaagaaagtaccattaactcat 570
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 agaaatgatctagataataattcattaccaccaattcaaaagaaagtaccattaactcat 570

                                                                       
Query: 571 ttacaaatttctgaaatttatgcaaattgtattaaactatcaactgaaaataaaattaat 630
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ttacaaatttctgaaatttatgcaaattgtattaaactatcaactgaaaataaaattaat 630

                                                                       
Query: 631 cnnnnnnnttcatggacattaaaattaattgatcattttgatgatgttttagagaatcaa 690
           |       ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 caaaaaaattcatggacattaaaattaattgatcattttgatgatgttttagagaatcaa 690

                                                                       
Query: 691 catgcaggtgaatcaaatacaaccaattttcaagcggcatcatgtgtattggatgcaagt 750
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 catgcaggtgaatcaaatacaaccaattttcaagcggcatcatgtgtattggatgcaagt 750

                                                                       
Query: 751 gtaaagatttattcaaatcgtgtagattctgtacatgttgatacatataagattttaggt 810
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 gtaaagatttattcaaatcgtgtagattctgtacatgttgatacatataagattttaggt 810

                                             
Query: 811 ggtttatcaagagcagaaagagaagaagtagcaa 844
           ||||||||||||||||||||||||||||||||||
Sbjct: 811 ggtttatcaagagcagaaagagaagaagtagcaa 844


 Score =  618 bits (312), Expect = e-177
 Identities = 312/312 (100%)
 Strand = Plus / Plus

                                                                        
Query: 937  attttaccaccagatattcattatgatattaaaatgttatcaagactatttaataaacca 996
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 937  attttaccaccagatattcattatgatattaaaatgttatcaagactatttaataaacca 996

                                                                        
Query: 997  aaatgttcaattccacctatgagtaaaagagaagaagttttaagattcttaaatccaaaa 1056
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 997  aaatgttcaattccacctatgagtaaaagagaagaagttttaagattcttaaatccaaaa 1056

                                                                        
Query: 1057 ttaaatagaaataatgatggtgaagggagtgatgatgatgaagataatggaaatcaagat 1116
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1057 ttaaatagaaataatgatggtgaagggagtgatgatgatgaagataatggaaatcaagat 1116

                                                                        
Query: 1117 tatgattttccaaattctcaaattcttcaagatgattttaatccaaatgaaaatatgaat 1176
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1117 tatgattttccaaattctcaaattcttcaagatgattttaatccaaatgaaaatatgaat 1176

                                                                        
Query: 1177 ggtgttggtagaattaatgatgatgaaggttatggaggaataggtggttgggatgacgaa 1236
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1177 ggtgttggtagaattaatgatgatgaaggttatggaggaataggtggttgggatgacgaa 1236

                        
Query: 1237 gatgatagacct 1248
            ||||||||||||
Sbjct: 1237 gatgatagacct 1248


 Score =  406 bits (205), Expect = e-113
 Identities = 208/208 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1493 gtcaaagaaattcagaaaatattgatgaatgtagttttggttcattaattgatgatttaa 1552
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1493 gtcaaagaaattcagaaaatattgatgaatgtagttttggttcattaattgatgatttaa 1552

                                                                        
Query: 1553 aagaagaacaaaatcaattaagattaaataataaaccaacagctggtgaagtttcaattc 1612
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1553 aagaagaacaaaatcaattaagattaaataataaaccaacagctggtgaagtttcaattc 1612

                                                                        
Query: 1613 ctcttgcttttatttgtgtattacatcttgccaagaaaagaatttaacattaaatcaagn 1672
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1613 ctcttgcttttatttgtgtattacatcttgccaagaaaagaatttaacattaaatcaagn 1672

                                        
Query: 1673 ataatataaataatttcataatttcaaa 1700
            ||||||||||||||||||||||||||||
Sbjct: 1673 ataatataaataatttcataatttcaaa 1700


 Score =  311 bits (157), Expect = 1e-84
 Identities = 157/157 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1306 aacaatgttggtggatttacatttggtttaaatggtggtgtcttaattgatgaaccaaga 1365
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1306 aacaatgttggtggatttacatttggtttaaatggtggtgtcttaattgatgaaccaaga 1365

                                                                        
Query: 1366 aaagttagtaaaattgatatcaattatgcaagagtatctaaaaagattgatgttaaatca 1425
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1366 aaagttagtaaaattgatatcaattatgcaagagtatctaaaaagattgatgttaaatca 1425

                                                 
Query: 1426 ttgaaaacttctgtttggtcaatcattgattctgatg 1462
            |||||||||||||||||||||||||||||||||||||
Sbjct: 1426 ttgaaaacttctgtttggtcaatcattgattctgatg 1462


 Score =  214 bits (108), Expect = 2e-55
 Identities = 111/111 (100%)
 Strand = Plus / Plus

                                                                       
Query: 52  atatattatatttaaaaatagatgacctntatattatcaaatttaaagaaaaggttttct 111
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52  atatattatatttaaaaatagatgacctntatattatcaaatttaaagaaaaggttttct 111

                                                              
Query: 112 attaaacctacaacaatatcagatattgttaataacaatgatgatgaaagt 162
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 attaaacctacaacaatatcagatattgttaataacaatgatgatgaaagt 162


 Score = 61.9 bits (31), Expect = 2e-09
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 1  aaatatataaattatttgttttaattatttc 31
          |||||||||||||||||||||||||||||||
Sbjct: 1  aaatatataaattatttgttttaattatttc 31


 Score = 34.2 bits (17), Expect = 0.48
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 1086 tgatgatgatgaagata 1102
            |||||||||||||||||
Sbjct: 852  tgatgatgatgaagata 868


>Contig-U12155-1 (Contig-U12155-1Q) /CSM_Contig/Contig-U12155-1Q.Seq.d
          Length = 1093

 Score = 42.1 bits (21), Expect = 0.002
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 1086 tgatgatgatgaagataatgg 1106
            |||||||||||||||||||||
Sbjct: 643  tgatgatgatgaagataatgg 663


 Score = 32.2 bits (16), Expect = 1.9
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                            
Query: 1086 tgatgatgatgaagat 1101
            ||||||||||||||||
Sbjct: 544  tgatgatgatgaagat 559


>Contig-U09784-1 (Contig-U09784-1Q) /CSM_Contig/Contig-U09784-1Q.Seq.d
          Length = 1022

 Score = 40.1 bits (20), Expect = 0.008
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 1100 ataatggaaatcaagattat 1119
            ||||||||||||||||||||
Sbjct: 360  ataatggaaatcaagattat 379


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 37,041
Number of Sequences: 6905
Number of extensions: 37041
Number of successful extensions: 4850
Number of sequences better than 10.0: 588
length of query: 1700
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1684
effective length of database: 5,564,391
effective search space: 9370434444
effective search space used: 9370434444
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.24
Homology vs DNA 
Query= Contig-U11401-1 (Contig-U11401-1Q) /CSM_Contig/Contig-U11401-1Q.Seq.d
         (1700 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ408804) Dictyostelium discoideum cDNA clone:dds47c05, 3' ...   622   0.0    3
(BJ379320) Dictyostelium discoideum cDNA clone:ddc34p08, 3' ...   400   0.0    3
(BJ352690) Dictyostelium discoideum cDNA clone:dda47h13, 3' ...   387   0.0    4
(BJ334728) Dictyostelium discoideum cDNA clone:dda47h13, 5' ...   765   0.0    2
(BJ368963) Dictyostelium discoideum cDNA clone:ddc48b22, 5' ...   460   0.0    3
(BJ365198) Dictyostelium discoideum cDNA clone:ddc34p08, 5' ...   446   e-180  3
(BJ413811) Dictyostelium discoideum cDNA clone:ddv17e04, 5' ...    38   4e-04  4
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    34   5e-04  14
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    36   6e-04  15
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214...    34   8e-04  13
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    42   0.003  16
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255...    34   0.005  24
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    38   0.008  17
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...    38   0.008  16
(AE014845) Plasmodium falciparum 3D7 chromosome 12, section ...    34   0.010  14
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098...    32   0.010  15
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    34   0.013  16
(AL844509) Plasmodium falciparum chromosome 13.                    36   0.017  15
(AE017263) Mesoplasma florum L1 complete genome.                   34   0.020  24
(CU431988) Clytia hemisphaerica 5-PRIME EST from clone SA0AA...    44   0.033  2
(AC116032) Dictyostelium discoideum chromosome 2 map 4158743...    40   0.041  5
(DY578663) A037-F7 Acropora millepora postsettlement library...    32   0.045  5
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...    32   0.051  18
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp...    36   0.061  22
(AK161841) Mus musculus adult male medulla oblongata cDNA, R...    48   0.064  2
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    32   0.066  16
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...    32   0.066  16
(AC149804) Medicago truncatula chromosome 6 clone mth2-73h22...    52   0.071  1
(BG584884) EST486645 MHAM Medicago truncatula/Glomus versifo...    52   0.071  1
(CT674788) Danio rerio EST, clone ZF_mu_200b21 5'.                 34   0.084  4
(DX933686) MUGQ_CH252P088F02Sp6_CP106_011 CHORI-252 Vervet M...    32   0.085  4
(AX458509) Sequence 55 from Patent WO0246454.                      38   0.095  4
(AC005308) Plasmodium falciparum chromosome 12 clone 3D7, **...    34   0.097  12
(AL929355) Plasmodium falciparum strain 3D7, chromosome 9; s...    34   0.10   13
(AL844506) Plasmodium falciparum chromosome  7.                    34   0.11   17
(DY578192) A021-G3 Acropora millepora postsettlement library...    32   0.14   5
(DY579382) A042-B12 Acropora millepora postsettlement librar...    32   0.15   5
(BX537270) Zebrafish DNA sequence from clone DKEY-278E24 in ...    46   0.15   9
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    38   0.18   17
(AC184322) Strongylocentrotus purpuratus clone R3-1116G16, W...    42   0.19   10
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-...    34   0.20   12
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    36   0.21   17
(AC163132) Bos taurus clone CH240-124A20, WORKING DRAFT SEQU...    40   0.21   6
(AC115592) Dictyostelium discoideum chromosome 2 map 1-12595...    30   0.24   13
(AC115612) Dictyostelium discoideum chromosome 2 map 6245135...    32   0.24   10
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    36   0.25   24
(AC211203) Zea mays chromosome 3 clone ZMMBBb-220I5; ZMMBBb0...    42   0.25   5
(AL929353) Plasmodium falciparum strain 3D7, chromosome 5, s...    36   0.28   12
(AY092779) Oxytricha sp. Misty micronuclear actin I gene, pa...    50   0.28   1
(DY817319) CTOX6376.b1_O10.ab1 CTO(XYZ) dandelion Taraxacum ...    50   0.28   1
(DY817281) CTOX6333.b1_J23.ab1 CTO(XYZ) dandelion Taraxacum ...    50   0.28   1
(AC135317) Medicago truncatula clone mth2-10p4, WORKING DRAF...    38   0.30   7
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi...    40   0.31   16
(CE446949) tigr-gss-dog-17000319051584 Dog Library Canis lup...    42   0.33   2
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    34   0.35   16
(FK592280) 454GmaGlobSeed326912 Soybean Seeds Containing Glo...    30   0.38   4
(FK522911) 454GmaGlobSeed257543 Soybean Seeds Containing Glo...    30   0.38   4
(CU441946) Clytia hemisphaerica 5-PRIME EST from clone SA0AA...    38   0.46   2
(AC124960) Medicago truncatula clone mth2-26j24, complete se...    34   0.46   11
(AE014842) Plasmodium falciparum 3D7 chromosome 11 section 7...    42   0.47   9
(AP010607) Lotus japonicus genomic DNA, chromosome 3, clone:...    32   0.48   7
(AC181232) Strongylocentrotus purpuratus clone R3-4010D14, W...    38   0.50   8
(AC133563) Homo sapiens chromosome 16 clone RP11-62I8, WORKI...    40   0.55   6
(AC225198) Zea mays chromosome 7 clone ZMMBBb-191I16; ZMMBBb...    42   0.58   6
(AC134766) Rattus norvegicus clone CH230-157E20, *** SEQUENC...    34   0.59   2
(DX991150) CHORI103-12F17.TV CHORI103 Schistosoma mansoni ge...    32   0.61   4
(EK211618) 1095460100663 Global-Ocean-Sampling_GS-31-01-01-1...    34   0.61   4
(AC159125) Medicago truncatula clone mth2-189o22, complete s...    34   0.64   11
(CW192983) 104_615_11179320_116_36772_086 Sorghum methylatio...    34   0.67   3
(AE017332) Mycoplasma hyopneumoniae 232, complete genome.          32   0.69   25
(DY985201) COT_FP_E01 Fiber and Ovule of Xu-142 Lambda Zap E...    40   0.79   2
(U29381) Caenorhabditis elegans cosmid F35D11, complete sequ...    40   0.80   4
(AP010601) Lotus japonicus genomic DNA, chromosome 5, clone:...    38   0.91   9
(AC179711) Strongylocentrotus purpuratus clone R3-1021F5, WO...    34   0.93   8
(AC201356) Strongylocentrotus purpuratus clone R3-17B14, WOR...    34   0.95   8
(DT520928) WS02448.B21_P01 PTxD-ICC-N-A-14 Populus trichocar...    32   1.0    4
(EE645857) CHEM6178.b1_C09.ab1 CHE(LMS) serpentine sunflower...    34   1.1    3
(AC161815) Mus musculus BAC clone RP23-353C21 from chromosom...    48   1.1    1
(AC114925) Mus musculus BAC clone RP24-349O21 from 16, compl...    48   1.1    1
(CU856592) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   1.1    1
(AC207766) Zea mays chromosome 3 clone CH201-157H3; ZMMBBc01...    48   1.1    1
(AC177261) Strongylocentrotus purpuratus clone R3-43K19, WOR...    48   1.1    1
(AZ361934) 1M0106O16R Mouse 10kb plasmid UUGC1M library Mus ...    48   1.1    1
(ER460354) 1092963890172 Global-Ocean-Sampling_GS-35-01-01-1...    48   1.1    1
(EK209134) 1095460092392 Global-Ocean-Sampling_GS-31-01-01-1...    48   1.1    1
(EJ282683) 1095366064686 Global-Ocean-Sampling_GS-27-01-01-1...    48   1.1    1
(DU248356) 1098574296310 CHORI-243 Ovis aries genomic clone ...    48   1.1    1
(DY802668) CTOX1079.b1_N06.ab1 CTO(XYZ) dandelion Taraxacum ...    48   1.1    1
(DT955023) CFW136-G10.y1d-s SHGC-CFW Gasterosteus aculeatus ...    48   1.1    1
(DT053370) COT_FO_E09 Fiber and Ovule of Xu-142 Lambda Zap E...    40   1.1    2
(DT052116) COT_EU_B08 Fiber and Ovule of Xu-142 Lambda Zap E...    40   1.1    2
(CP000048) Borrelia hermsii DAH, complete genome.                  36   1.1    25
(EY309430) CAWX21587.fwd CAWX Helobdella robusta Primary Ear...    36   1.2    3
(EY319503) CAWX6919.rev CAWX Helobdella robusta Primary Earl...    40   1.2    3
(DW497412) GH_TMIRS_015_H12_R Cotton Normalized Library dT p...    40   1.2    2
(AF360097) Penaeus (Litopenaeus) vannamei microsatellite TUM...    32   1.2    3
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome.         36   1.3    21
(EC822801) SME00004275 esmbsro2 Sawyeria marylandensis cDNA,...    44   1.3    2
(DW514586) GH_TMIRS_183_G03_R Cotton Normalized Library dT p...    40   1.3    2
(AE014849) Plasmodium falciparum 3D7 chromosome 12, section ...    32   1.3    12

>(BJ408804) Dictyostelium discoideum cDNA clone:dds47c05, 3' end,
            single read.
          Length = 764

 Score =  622 bits (314), Expect(3) = 0.0
 Identities = 314/314 (100%)
 Strand = Plus / Minus


Query: 937  attttaccaccagatattcattatgatattaaaatgttatcaagactatttaataaacca 996
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764  attttaccaccagatattcattatgatattaaaatgttatcaagactatttaataaacca 705


Query: 997  aaatgttcaattccacctatgagtaaaagagaagaagttttaagattcttaaatccaaaa 1056
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704  aaatgttcaattccacctatgagtaaaagagaagaagttttaagattcttaaatccaaaa 645


Query: 1057 ttaaatagaaataatgatggtgaagggagtgatgatgatgaagataatggaaatcaagat 1116
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644  ttaaatagaaataatgatggtgaagggagtgatgatgatgaagataatggaaatcaagat 585


Query: 1117 tatgattttccaaattctcaaattcttcaagatgattttaatccaaatgaaaatatgaat 1176
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584  tatgattttccaaattctcaaattcttcaagatgattttaatccaaatgaaaatatgaat 525


Query: 1177 ggtgttggtagaattaatgatgatgaaggttatggaggaataggtggttgggatgacgaa 1236
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524  ggtgttggtagaattaatgatgatgaaggttatggaggaataggtggttgggatgacgaa 465


Query: 1237 gatgatagacctat 1250
            ||||||||||||||
Sbjct: 464  gatgatagacctat 451

 Score =  381 bits (192), Expect(3) = 0.0
 Identities = 197/198 (99%)
 Strand = Plus / Minus


Query: 1493 gtcaaagaaattcagaaaatattgatgaatgtagttttggttcattaattgatgatttaa 1552
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208  gtcaaagaaattcagaaaatattgatgaatgtagttttggttcattaattgatgatttaa 149


Query: 1553 aagaagaacaaaatcaattaagattaaataataaaccaacagctggtgaagtttcaattc 1612
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 148  aagaagaacaaaatcaattaagattaaataataaaccaacagctggtnaagtttcaattc 89


Query: 1613 ctcttgcttttatttgtgtattacatcttgccaagaaaagaatttaacattaaatcaagn 1672
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88   ctcttgcttttatttgtgtattacatcttgccaagaaaagaatttaacattaaatcaagn 29


Query: 1673 ataatataaataatttca 1690
            ||||||||||||||||||
Sbjct: 28   ataatataaataatttca 11

 Score =  299 bits (151), Expect(3) = 0.0
 Identities = 151/151 (100%)
 Strand = Plus / Minus


Query: 1312 gttggtggatttacatttggtttaaatggtggtgtcttaattgatgaaccaagaaaagtt 1371
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389  gttggtggatttacatttggtttaaatggtggtgtcttaattgatgaaccaagaaaagtt 330


Query: 1372 agtaaaattgatatcaattatgcaagagtatctaaaaagattgatgttaaatcattgaaa 1431
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329  agtaaaattgatatcaattatgcaagagtatctaaaaagattgatgttaaatcattgaaa 270


Query: 1432 acttctgtttggtcaatcattgattctgatg 1462
            |||||||||||||||||||||||||||||||
Sbjct: 269  acttctgtttggtcaatcattgattctgatg 239

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 2,029,947,018
Number of extensions: 136198904
Number of successful extensions: 12165206
Number of sequences better than 10.0: 491
Length of query: 1700
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1676
Effective length of database: 97,308,875,965
Effective search space: 163089676117340
Effective search space used: 163089676117340
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.30
Homology vs Protein 
Query= Contig-U11401-1 (Contig-U11401-1Q) /CSM_Contig/Contig-U11401-1Q.Seq.d
         (1700 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT055836_1(BT055836|pid:none) Zea mays full-length cDNA clone ZM...   107   1e-21
AC004681_14(AC004681|pid:none) Arabidopsis thaliana chromosome 2...   107   2e-21
AB193292_1(AB193292|pid:none) Arabidopsis thaliana AtCAP-H mRNA ...   107   2e-21
CR954201_264(CR954201|pid:none) Ostreococcus tauri strain OTTH05...   105   4e-21
CP000581_291(CP000581|pid:none) Ostreococcus lucimarinus CCE9901...   105   4e-21
AC150799_10(AC150799|pid:none) Medicago truncatula chromosome 2 ...   100   2e-19
BC068643_1(BC068643|pid:none) Xenopus laevis 13S condensin XCAP-...    96   5e-18
BC056095_1(BC056095|pid:none) Xenopus laevis barren homolog (Dro...    93   3e-17
BC129325_1(BC129325|pid:none) Danio rerio zgc:158618, mRNA (cDNA...    92   6e-17
BC105144_1(BC105144|pid:none) Bos taurus non-SMC condensin I com...    91   1e-16
BC024211_1(BC024211|pid:none) Homo sapiens non-SMC condensin I c...    90   3e-16
AK299248_1(AK299248|pid:none) Homo sapiens cDNA FLJ60336 complet...    90   3e-16
(Q15003) RecName: Full=Condensin complex subunit 2; AltName: Ful...    90   3e-16
D38553_1(D38553|pid:none) Homo sapiens HCAP-H mRNA, partial cds.       90   3e-16
(Q8C156) RecName: Full=Condensin complex subunit 2; AltName: Ful...    88   8e-16
BC021499_1(BC021499|pid:none) Mus musculus non-SMC condensin I c...    88   8e-16
FN357490_8(FN357490|pid:none) Schistosoma mansoni genome sequenc...    84   2e-14
CR380959_415(CR380959|pid:none) Candida glabrata strain CBS138 c...    79   7e-13
AE017352_315(AE017352|pid:none) Cryptococcus neoformans var. neo...    79   7e-13
CR382125_292(CR382125|pid:none) Kluyveromyces lactis strain NRRL...    77   1e-12
CU928178_555(CU928178|pid:none) Zygosaccharomyces rouxii strain ...    77   2e-12
AE016820_96(AE016820|pid:none) Ashbya gossypii (= Eremothecium g...    76   3e-12
AP007159_724(AP007159|pid:none) Aspergillus oryzae RIB40 genomic...    76   4e-12
AY558077_1(AY558077|pid:none) Saccharomyces cerevisiae clone FLH...    75   7e-12
S45403(S45403;S45838;S59200) hypothetical protein YBL097w - yeas...    75   7e-12
(P38170) RecName: Full=Condensin complex subunit 2; AltName: Ful...    75   7e-12
T49494(T49494)condensin complex component cnd2 related protein [...    73   3e-11
FM992691_499(FM992691|pid:none) Candida dubliniensis CD36 chromo...    72   8e-11
CU928167_237(CU928167|pid:none) Kluyveromyces thermotolerans str...    72   8e-11
CR382135_498(CR382135|pid:none) Debaryomyces hansenii strain CBS...    68   9e-10
CR382128_133(CR382128|pid:none) Yarrowia lipolytica strain CLIB1...    66   4e-09
U74488_1(U74488|pid:none) Drosophila melanogaster Barren (barr) ...    66   4e-09
AL590442_127(AL590442|pid:none) chromosome II of strain GB-M1 of...    65   6e-09
AK129047_1(AK129047|pid:none) Mus musculus mRNA for mKIAA0074 pr...    61   1e-07
AM910996_25(AM910996|pid:none) Plasmodium knowlesi strain H chro...    57   2e-06
AK303725_1(AK303725|pid:none) Homo sapiens cDNA FLJ51440 complet...    54   2e-05
AL844509_40(AL844509|pid:none) Plasmodium falciparum 3D7 chromos...    52   7e-05
CR940352_97(CR940352|pid:none) Theileria annulata strain Ankara ...    49   4e-04
AP008207_1518(AP008207|pid:none) Oryza sativa (japonica cultivar...    46   0.004
CU633438_800(CU633438|pid:none) Podospora anserina genomic DNA c...    46   0.005
AE014188_212(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    38   0.98
CU928174_250(CU928174|pid:none) Zygosaccharomyces rouxii strain ...    37   2.2
CP000728_860(CP000728|pid:none) Clostridium botulinum F str. Lan...    36   3.7
CP000939_881(CP000939|pid:none) Clostridium botulinum B1 str. Ok...    36   3.7
CP000764_1571(CP000764|pid:none) Bacillus cereus subsp. cytotoxi...    35   8.3

>BT055836_1(BT055836|pid:none) Zea mays full-length cDNA clone
           ZM_BFb0232P13 mRNA, complete cds.
           &BT063530_1(BT063530|pid:none)
           &EU972245_1(EU972245|pid:none)
          Length = 674

 Score =  107 bits (268), Expect = 1e-21
 Identities = 52/94 (55%), Positives = 68/94 (72%)
 Frame = +1

Query: 562 LTHLQISEIYANCIKLSTENKINQKNSWTLKLIDHFDDVLENQHAGESNTTNFQAASCVL 741
           L   Q+ +++ NCIKL++ENKINQKN+W L LIDH  ++++     E   TNFQ ASC L
Sbjct: 76  LNREQVMDLFHNCIKLASENKINQKNTWELGLIDHLSEIIQ-AGVDEDEETNFQKASCTL 134

Query: 742 DASVKIYSNRVDSVHVDTYKILGGLSRAEREEVA 843
           +A VKIYS RVDSVH + YK+LGG++RA R E A
Sbjct: 135 EAGVKIYSLRVDSVHSEAYKVLGGINRAGRGEEA 168

 Score = 43.1 bits (100), Expect = 0.031
 Identities = 30/101 (29%), Positives = 46/101 (45%)
 Frame = +1

Query: 1348 LIDEPRKVSKIDINYARVSKKIDVKSLKTSVWXXXXXXXXXXXXXXXXXXXXXXXXXECS 1527
            LI++PR+V+KIDI Y +VSK++DV +LK  +W
Sbjct: 561  LINKPRQVNKIDIQYDKVSKQVDVHALKEVLW-------NHIHASAETGQEREEPGPPLR 613

Query: 1528 FGSLIDDLKEEQNQLRLNNKPTAGEVSIPLAFICVLHLAKK 1650
               ++ DL         +    A ++S  L FIC+LHLA +
Sbjct: 614  LSQVLHDLPSS------SPDAVATDISPHLYFICLLHLANE 648

Lambda     K      H
   0.317    0.135    0.392

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,599,561,526
Number of extensions: 23349625
Number of successful extensions: 70492
Number of sequences better than 10.0: 45
Number of HSP's gapped: 70354
Number of HSP's successfully gapped: 72
Length of query: 566
Length of database: 1,040,966,779
Length adjustment: 134
Effective length of query: 432
Effective length of database: 611,592,589
Effective search space: 264207998448
Effective search space used: 264207998448
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.79  gvh: 0.20  alm: 0.33  top: 0.53  tms: 0.00  mit: 0.38  mip: 0.03
 nuc: 0.18  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: nuclear
	 16.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for Contig-U11401-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 1
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 1
SF (FL, S) 0
CH (FL, L) 2
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0