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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U11395-1
Contig ID Contig-U11395-1
Contig update 2002.12.18
Contig sequence 
>Contig-U11395-1 (Contig-U11395-1Q) /CSM_Contig/Contig-U11395-1Q.Seq.d
AGCACCAGATTATTATTATATATTAGTTAAAAATAAATTTGAAATCAGTG
ATAGTTTCAATAGAAATATAGGAAGGAATACAATAAATGTCAACAGTTCT
GGATTANATTTCAAAACTGTAATTAGTATTTTAGAGAATGCTGACCATCA
AATGTTTGATATTTGGGTTTATCCTTATGTTGACACAGTGCCTTGCCTTA
TTGAAATGCTTACTGAATCTGATATGAAAACTATGTTATTTAGAAAATGT
GAAAAGGGTAATCCATTTGACGAAGAAAGAATCAAACAATTATACATAGA
ATTGAAACGTGACTCTTATTATAATTATAATAGACATTTAAATCCTAAAC
TTGTACTAACNCCATTCATTCAAGCTTTGAGATACTTCTTTTTAATTAAC
GCTATACTTAATGATGATTCTGAAAAGATTTATTCAAGTTGGTATAATCT
TGGNCATTATTTTGATTATACTCAAAAATCAAGANAGATTCGTTAGAGAG
ATTTTACCACTTGCAAATCTTTGTAAACACATCTCATCNNNNNNNNN---
-------TAATACAGCATCTGATACATCATTAAAAAGTTATAATGTTATA
GAGAAACCAGATAATTTAGATCCAGGATGATATTGAAAAACAAATTAAAC
TTATAAAAGCTGTAATTAAGAAATTAAAAAATCCATTTGCATTTGATATT
CAATTCTTTCATAATAATAATCAATTACAATATTATTTACCATTGTTTAA
TTGGATTTTAAATACTCCATTCTTAAGAAACAAAGTTAGTAAAGGTATTG
ATATACTTTATTATGTTTGTGGTAGATCTATAGAATTCCTTCAAATCTAT
AAAGATAATTTTAAATTCCATTTATTTGATTCAACAATCTATGATTTAAT
TCTTCAAAATGGTGATACTGAATTCATTGGTTTATTATTTGATGAATATT
ATAATGGTTCCCCACCATCACAACCACCATCATCATCATCATCACAATCT
TATAAAAACAATTGTGAAGAATTCAGAAAAAAGATAAAACTAATGTTACA
ACATTCAGTTTTAAAAGGTCATCTTTCAGTTGCTCAATTTTTACATGATA
ATAAAATTGGAAAACAATATTTAGAAGAGCTTGTAAATCAAAATTTTGCA
GACTTAATTTCAGAGGATCGTTTGGAAATTGTTGAATTCCTTTATCAAAA
TAATTATATCTCAATAACNGATGTTGATTATATTGTAAATTTATTTAATA
ATAACAAACCAAAAAAA
Gap gap included
Contig length 1257
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 3517680
End point 3516432
Strand (PLUS/MINUS) MINUS
Number of clones 2
Number of EST 3
Link to clone list U11395
List of clone(s) 

est1=AHI188F,1,538
est2=AHI188Z,539,1249
est3=SHE221Z,589,1234
Translated Amino Acid sequence 
hqiiiiy*lkinlksvivsiei*egiq*mstvldxiskl*lvf*rmltikclifgfilml
tqclallkcllnli*klcylenvkrvihltkkesnnyt*n*nvtliiiiidi*ilnly*x
hsfkl*dtsf*LTLYLMMILKRFIQVGIILXIILIILKNQXRFVREILPLANLCKHISSX
X---

---NTASDTSLKSYNVIEKPDNLDPG*y*ktn*tykscn*eikksici*ysils***sit
ilftiv*ldfkysilkkqs**ry*ytllclw*iyripsnl*r*f*ipfi*fnnl*fnssk
w*y*ihwfii**il*wfptitttiiiiitil*kql*riqkkdktnvttfsfkrssfscsi
ft***nwktifrrackskfcrlnfrgsfgnc*iplsk*lylnnxc*lyckfi***qtkk
Translated Amino Acid sequence (All Frames) 
Frame A:
strlllyis*k*i*nq**fq*kyrkeynkcqqfwixfqncn*yfrec*psnv*ylglslc
*hsalpy*nay*i*yenyvi*km*kg*si*rrknqtiihriet*lll*l**tfks*tctn
xihssfeillfn*ryt***f*kdlfklv*swxlf*lyskikxdslerfyhlqifvntshx
xx---

---*ysi*yiikkl*cyretr*frsrmilknklnl*kl*lrn*kihlhlifnsfiiiiny
niiyhcligf*ilhs*etklvkvliyfimfvvdl*nsfksikiilnsiyliqqsmi*ffk
mvilnslvyylmniimvphhhnhhhhhhhnliktivknsekr*n*cyniqf*kvifqlln
fymiiklenni*ksl*ikilqt*fqrivwkllnsfikiiisq*xmliil*iyliitnqk

Frame B:
apdyyyilvknkfeisdsfnrnigrntinvnssglxfktvisilenadhqmfdiwvypyv
dtvpcliemltesdmktmlfrkcekgnpfdeerikqlyielkrdsyynynrhlnpklvlt
pfiqalryfflinailnddsekiysswynlghyfdytqksrxir*rdfttcksl*thlix
xx---

---NTASDTSLKSYNVIEKPDNLDPG*y*ktn*tykscn*eikksici*ysils***sit
ilftiv*ldfkysilkkqs**ry*ytllclw*iyripsnl*r*f*ipfi*fnnl*fnssk
w*y*ihwfii**il*wfptitttiiiiitil*kql*riqkkdktnvttfsfkrssfscsi
ft***nwktifrrackskfcrlnfrgsfgnc*iplsk*lylnnxc*lyckfi***qtkk

Frame C:
hqiiiiy*lkinlksvivsiei*egiq*mstvldxiskl*lvf*rmltikclifgfilml
tqclallkcllnli*klcylenvkrvihltkkesnnyt*n*nvtliiiiidi*ilnly*x
hsfkl*dtsf*LTLYLMMILKRFIQVGIILXIILIILKNQXRFVREILPLANLCKHISSX
X---

---iqhlihh*kviml*rnqii*iqddiekqiklikavikklknpfafdiqffhnnnqlq
yylplfnwilntpflrnkvskgidilyyvcgrsieflqiykdnfkfhlfdstiydlilqn
gdtefigllfdeyyngsppsqppsssssqsyknnceefrkkiklmlqhsvlkghlsvaqf
lhdnkigkqyleelvnqnfadlisedrleiveflyqnnyisitdvdyivnlfnnnkpkk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U11395-1 (Contig-U11395-1Q)
/CSM_Contig/Contig-U11395-1Q.Seq.d
         (1267 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U11395-1 (Contig-U11395-1Q) /CSM_Contig/Conti...  1043  0.0
Contig-U09823-1 (Contig-U09823-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U08828-1 (Contig-U08828-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U05220-1 (Contig-U05220-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U14573-1 (Contig-U14573-1Q) /CSM_Contig/Conti...    36  0.090
Contig-U12401-1 (Contig-U12401-1Q) /CSM_Contig/Conti...    36  0.090
Contig-U12332-1 (Contig-U12332-1Q) /CSM_Contig/Conti...    36  0.090
Contig-U11131-1 (Contig-U11131-1Q) /CSM_Contig/Conti...    36  0.090
Contig-U08130-1 (Contig-U08130-1Q) /CSM_Contig/Conti...    36  0.090
Contig-U13628-1 (Contig-U13628-1Q) /CSM_Contig/Conti...    32  1.4

>Contig-U11395-1 (Contig-U11395-1Q) /CSM_Contig/Contig-U11395-1Q.Seq.d
          Length = 1267

 Score = 1043 bits (526), Expect = 0.0
 Identities = 538/538 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcaccagattattattatatattagttaaaaataaatttgaaatcagtgatagtttcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   agcaccagattattattatatattagttaaaaataaatttgaaatcagtgatagtttcaa 60

                                                                       
Query: 61  tagaaatataggaaggaatacaataaatgtcaacagttctggattanatttcaaaactgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tagaaatataggaaggaatacaataaatgtcaacagttctggattanatttcaaaactgt 120

                                                                       
Query: 121 aattagtattttagagaatgctgaccatcaaatgtttgatatttgggtttatccttatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aattagtattttagagaatgctgaccatcaaatgtttgatatttgggtttatccttatgt 180

                                                                       
Query: 181 tgacacagtgccttgccttattgaaatgcttactgaatctgatatgaaaactatgttatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgacacagtgccttgccttattgaaatgcttactgaatctgatatgaaaactatgttatt 240

                                                                       
Query: 241 tagaaaatgtgaaaagggtaatccatttgacgaagaaagaatcaaacaattatacataga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagaaaatgtgaaaagggtaatccatttgacgaagaaagaatcaaacaattatacataga 300

                                                                       
Query: 301 attgaaacgtgactcttattataattataatagacatttaaatcctaaacttgtactaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 attgaaacgtgactcttattataattataatagacatttaaatcctaaacttgtactaac 360

                                                                       
Query: 361 nccattcattcaagctttgagatacttctttttaattaacgctatacttaatgatgattc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 nccattcattcaagctttgagatacttctttttaattaacgctatacttaatgatgattc 420

                                                                       
Query: 421 tgaaaagatttattcaagttggtataatcttggncattattttgattatactcaaaaatc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tgaaaagatttattcaagttggtataatcttggncattattttgattatactcaaaaatc 480

                                                                     
Query: 481 aaganagattcgttagagagattttaccacttgcaaatctttgtaaacacatctcatc 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aaganagattcgttagagagattttaccacttgcaaatctttgtaaacacatctcatc 538


 Score =  833 bits (420), Expect = 0.0
 Identities = 420/420 (100%)
 Strand = Plus / Plus

                                                                       
Query: 558 taatacagcatctgatacatcattaaaaagttataatgttatagagaaaccagataattt 617
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 taatacagcatctgatacatcattaaaaagttataatgttatagagaaaccagataattt 617

                                                                       
Query: 618 agatccaggatgatattgaaaaacaaattaaacttataaaagctgtaattaagaaattaa 677
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 agatccaggatgatattgaaaaacaaattaaacttataaaagctgtaattaagaaattaa 677

                                                                       
Query: 678 aaaatccatttgcatttgatattcaattctttcataataataatcaattacaatattatt 737
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 aaaatccatttgcatttgatattcaattctttcataataataatcaattacaatattatt 737

                                                                       
Query: 738 taccattgtttaattggattttaaatactccattcttaagaaacaaagttagtaaaggta 797
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 taccattgtttaattggattttaaatactccattcttaagaaacaaagttagtaaaggta 797

                                                                       
Query: 798 ttgatatactttattatgtttgtggtagatctatagaattccttcaaatctataaagata 857
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 ttgatatactttattatgtttgtggtagatctatagaattccttcaaatctataaagata 857

                                                                       
Query: 858 attttaaattccatttatttgattcaacaatctatgatttaattcttcaaaatggtgata 917
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 attttaaattccatttatttgattcaacaatctatgatttaattcttcaaaatggtgata 917

                                                                       
Query: 918 ctgaattcattggtttattatttgatgaatattataatggttccccaccatcacaaccac 977
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 918 ctgaattcattggtttattatttgatgaatattataatggttccccaccatcacaaccac 977


 Score =  521 bits (263), Expect = e-148
 Identities = 266/266 (100%)
 Strand = Plus / Plus

                                                                        
Query: 995  caatcttataaaaacaattgtgaagaattcagaaaaaagataaaactaatgttacaacat 1054
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 995  caatcttataaaaacaattgtgaagaattcagaaaaaagataaaactaatgttacaacat 1054

                                                                        
Query: 1055 tcagttttaaaaggtcatctttcagttgctcaatttttacatgataataaaattggaaaa 1114
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1055 tcagttttaaaaggtcatctttcagttgctcaatttttacatgataataaaattggaaaa 1114

                                                                        
Query: 1115 caatatttagaagagcttgtaaatcaaaattttgcagacttaatttcagaggatcgtttg 1174
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1115 caatatttagaagagcttgtaaatcaaaattttgcagacttaatttcagaggatcgtttg 1174

                                                                        
Query: 1175 gaaattgttgaattcctttatcaaaataattatatctcaataacngatgttgattatatt 1234
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1175 gaaattgttgaattcctttatcaaaataattatatctcaataacngatgttgattatatt 1234

                                      
Query: 1235 gtaaatttatttaataataacaaacc 1260
            ||||||||||||||||||||||||||
Sbjct: 1235 gtaaatttatttaataataacaaacc 1260


 Score = 32.2 bits (16), Expect = 1.4
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                           
Query: 317 tattataattataata 332
           ||||||||||||||||
Sbjct: 332 tattataattataata 317


>Contig-U09823-1 (Contig-U09823-1Q) /CSM_Contig/Contig-U09823-1Q.Seq.d
          Length = 994

 Score = 40.1 bits (20), Expect = 0.006
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 232 tatgttatttagaaaatgtgaaaa 255
           |||| |||||||||||||||||||
Sbjct: 288 tatgatatttagaaaatgtgaaaa 311


>Contig-U08828-1 (Contig-U08828-1Q) /CSM_Contig/Contig-U08828-1Q.Seq.d
          Length = 1209

 Score = 40.1 bits (20), Expect = 0.006
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 1053 attcagttttaaaaggtcat 1072
            ||||||||||||||||||||
Sbjct: 403  attcagttttaaaaggtcat 422


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 45,907
Number of Sequences: 6905
Number of extensions: 45907
Number of successful extensions: 3516
Number of sequences better than 10.0: 370
length of query: 1267
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1251
effective length of database: 5,564,391
effective search space: 6961053141
effective search space used: 6961053141
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.24
Homology vs DNA 
Query= Contig-U11395-1 (Contig-U11395-1Q) /CSM_Contig/Contig-U11395-1Q.Seq.d
         (1267 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ334824) Dictyostelium discoideum cDNA clone:dda47o21, 5' ...  1043   0.0    1
(BJ405562) Dictyostelium discoideum cDNA clone:dds32i06, 3' ...   585   0.0    3
(BJ352798) Dictyostelium discoideum cDNA clone:dda47o21, 3' ...   585   0.0    2
(AE014828) Plasmodium falciparum 3D7 chromosome 14 section 1...    32   4e-04  13
(AL929356) Plasmodium falciparum strain 3D7, chromosome 9; s...    34   9e-04  14
(AE014848) Plasmodium falciparum 3D7 chromosome 12, section ...    40   0.001  14
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    38   0.002  16
(AE014819) Plasmodium falciparum 3D7 chromosome 14 section 4...    32   0.004  14
(AL844506) Plasmodium falciparum chromosome  7.                    36   0.005  15
(AE014832) Plasmodium falciparum 3D7 chromosome 10 section 4...    34   0.006  12
(AE013218) Buchnera aphidicola str. Sg (Schizaphis graminum)...    34   0.010  21
(AE017263) Mesoplasma florum L1 complete genome.                   34   0.011  20
(AL929354) Plasmodium falciparum strain 3D7, chromosome 5, s...    34   0.022  14
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572...    36   0.039  10
(CP000312) Clostridium perfringens SM101, complete genome.         36   0.040  21
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    32   0.041  16
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    34   0.045  13
(AF250284) Amsacta moorei entomopoxvirus, complete genome.         42   0.046  13
(CP000728) Clostridium botulinum F str. Langeland, complete ...    34   0.050  19
(AC215273) Zea mays chromosome 8 clone CH201-179K24; ZMMBBc0...    52   0.052  1
(AL034557) Plasmodium falciparum MAL4P1.                           34   0.063  15
(AC004153) Plasmodium falciparum chromosome 12 clone 3D7, **...    40   0.080  10
(AE014846) Plasmodium falciparum 3D7 chromosome 12, section ...    36   0.094  13
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    36   0.11   14
(AL929355) Plasmodium falciparum strain 3D7, chromosome 9; s...    34   0.12   13
(CP000102) Methanosphaera stadtmanae DSM 3091, complete genome.    32   0.15   22
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    34   0.15   10
(AL035477) Plasmodium falciparum MAL4P4.                           40   0.19   12
(AC225480) Medicago truncatula clone mth2-24c6, WORKING DRAF...    40   0.20   8
(EF362552) Bryum dunense atpB-rbcL intergenic spacer, partia...    50   0.21   1
(EF362551) Bryum dunense atpB-rbcL intergenic spacer, partia...    50   0.21   1
(DQ539488) Bryum versicolor atpB-rbcL intergenic spacer, par...    50   0.21   1
(DQ539479) Bryum gemmilucens atpB-rbcL intergenic spacer, pa...    50   0.21   1
(DQ539476) Bryum dunense atpB-rbcL intergenic spacer, partia...    50   0.21   1
(AF546834) Bryum caespiticium atpB-rbcL intergenic spacer, p...    50   0.21   1
(AM649171) Entamoeba moshkovskii FIC GSS, clone mosh064h07.p1k.    50   0.21   1
(AM633494) Entamoeba dispar GSS, clone dispar101g02.q1k.           50   0.21   1
(AM631371) Entamoeba dispar GSS, clone dispar67f09.p1k.            50   0.21   1
(AJ011856) Saccharomyces cerevisiae complete mitochondrial g...    32   0.21   8
(AL844509) Plasmodium falciparum chromosome 13.                    36   0.24   15
(AE014822) Plasmodium falciparum 3D7 chromosome 14 section 7...    34   0.25   10
(AM698041) Vanderwaltozyma polyspora partial mitochondrial g...    32   0.29   7
(AE014842) Plasmodium falciparum 3D7 chromosome 11 section 7...    34   0.29   12
(AE014817) Plasmodium falciparum 3D7 chromosome 14 section 2...    34   0.29   11
(AC202219) Acyrthosiphon pisum clone VMRC38-20-A4, WORKING D...    42   0.42   6
(AL031745) Plasmodium falciparum DNA from MAL1P2.                  40   0.45   13
(CU466931) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   0.51   7
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    34   0.51   19
(L06178) Apis mellifera ligustica complete mitochondrial gen...    38   0.52   5
(AC006266) Arabidopsis thaliana BAC F1K3 from chromosome IV ...    34   0.55   9
(EU004203) Saccharomyces cerevisiae YJM789 mitochondrion, co...    34   0.57   6
(AC141730) Apis mellifera clone CH224-58F21, WORKING DRAFT S...    42   0.58   7
(AC216460) Populus trichocarpa clone POP078-K23, complete se...    38   0.59   6
(AE017243) Mycoplasma hyopneumoniae J, complete genome.            36   0.65   18
(CG920655) MBELC46TR mth2 Medicago truncatula genomic clone ...    36   0.66   3
(CR382398) Plasmodium falciparum chromosome 6, complete sequ...    38   0.70   10
(AC094798) Rattus norvegicus clone CH230-5A13, *** SEQUENCIN...    42   0.70   8
(AC098218) Rattus norvegicus clone CH230-121L18, *** SEQUENC...    38   0.72   8
(AE014826) Plasmodium falciparum 3D7 chromosome 14 section 1...    34   0.72   12
(AC113270) Mus musculus chromosome 7, clone RP23-375O10, com...    40   0.74   4
(CR936408) Zebrafish DNA sequence from clone CH73-266O15 in ...    48   0.82   1
(CR392350) Zebrafish DNA sequence from clone DKEY-61N21 in l...    48   0.82   1
(AL954311) Zebrafish DNA sequence from clone CH211-138M12 in...    48   0.82   1
(AL590225) Human DNA sequence from clone RP11-358H7 on chrom...    48   0.82   1
(CU914560) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    48   0.82   1
(CT030676) Platynereis dumerilii bac CH305_189M20, WORKING D...    48   0.82   1
(FH965541) CHO_OF6783xb15r1.ab1 CHO_OF6 Nicotiana tabacum ge...    48   0.82   1
(FH535899) CHO_OF4739xd12r1.ab1 CHO_OF4 Nicotiana tabacum ge...    48   0.82   1
(FH377790) CHO_OF4612xe20f1.ab1 CHO_OF4 Nicotiana tabacum ge...    48   0.82   1
(FH189956) CHO_OF3443xp13r1.ab1 CHO_OF3 Nicotiana tabacum ge...    48   0.82   1
(FH189955) CHO_OF3443xp11r1.ab1 CHO_OF3 Nicotiana tabacum ge...    48   0.82   1
(FH179743) CHO_OF3415xk16f1.ab1 CHO_OF3 Nicotiana tabacum ge...    48   0.82   1
(ET804344) CHO_OF705xf01r1.ab1 CHO_OF Nicotiana tabacum geno...    48   0.82   1
(ET784995) CHO_OF634xm01r1.ab1 CHO_OF Nicotiana tabacum geno...    48   0.82   1
(CE060688) tigr-gss-dog-17000322574250 Dog Library Canis lup...    48   0.82   1
(EY379104) CAXA17617.fwd CAXA Helobdella robusta Subtracted ...    48   0.82   1
(DX403669) GK_Sa0005J07.b1 Gossypioides kirkii WGS library G...    42   1.0    2
(AL049185) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    36   1.1    14
(CT827853) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   1.1    5
(AM440772) Vitis vinifera contig VV78X223652.6, whole genome...    42   1.1    2
(AL121834) Human DNA sequence from clone RP3-509I19 on chrom...    36   1.1    5
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    32   1.1    12
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-...    34   1.2    11
(AG435997) Mus musculus molossinus DNA, clone:MSMg01-315F02....    40   1.4    2
(AC164348) Bos taurus clone CH240-138M24, WORKING DRAFT SEQU...    38   1.4    8
(CU694531) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    36   1.5    6
(CP000609) Methanococcus maripaludis C5, complete genome.          34   1.5    19
(AL034558) Plasmodium falciparum MAL3P2.                           36   1.6    11
(BD428843) Method and nucleic acids for pharmacogenomic meth...    30   1.7    5
(AX348322) Sequence 17 from Patent WO0202806.                      30   1.7    5
(AX345120) Sequence 191 from Patent WO0200928.                     30   1.7    5
(AP000764) Homo sapiens genomic DNA, chromosome 11 clone:RP1...    36   1.7    7
(AE014823) Plasmodium falciparum 3D7 chromosome 14 section 8...    34   1.7    13
(CU640489) Zebrafish DNA sequence from clone CH73-373L24 in ...    44   1.8    4
(AC090362) Homo sapiens chromosome 18 clone RP11-865K7 map 1...    34   1.8    8
(AP006716) Staphylococcus haemolyticus JCSC1435 DNA, complet...    36   1.8    19
(AE014818) Plasmodium falciparum 3D7 chromosome 14 section 3...    34   1.9    13
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    36   1.9    15
(AE014816) Plasmodium falciparum 3D7 chromosome 14 section 1...    36   2.0    11
(AE014850) Plasmodium falciparum 3D7 chromosome 12, section ...    34   2.0    11

>(BJ334824) Dictyostelium discoideum cDNA clone:dda47o21, 5' end,
           single read.
          Length = 538

 Score = 1043 bits (526), Expect = 0.0
 Identities = 538/538 (100%)
 Strand = Plus / Plus


Query: 1   agcaccagattattattatatattagttaaaaataaatttgaaatcagtgatagtttcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   agcaccagattattattatatattagttaaaaataaatttgaaatcagtgatagtttcaa 60


Query: 61  tagaaatataggaaggaatacaataaatgtcaacagttctggattanatttcaaaactgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tagaaatataggaaggaatacaataaatgtcaacagttctggattanatttcaaaactgt 120


Query: 121 aattagtattttagagaatgctgaccatcaaatgtttgatatttgggtttatccttatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aattagtattttagagaatgctgaccatcaaatgtttgatatttgggtttatccttatgt 180


Query: 181 tgacacagtgccttgccttattgaaatgcttactgaatctgatatgaaaactatgttatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgacacagtgccttgccttattgaaatgcttactgaatctgatatgaaaactatgttatt 240


Query: 241 tagaaaatgtgaaaagggtaatccatttgacgaagaaagaatcaaacaattatacataga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagaaaatgtgaaaagggtaatccatttgacgaagaaagaatcaaacaattatacataga 300


Query: 301 attgaaacgtgactcttattataattataatagacatttaaatcctaaacttgtactaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 attgaaacgtgactcttattataattataatagacatttaaatcctaaacttgtactaac 360


Query: 361 nccattcattcaagctttgagatacttctttttaattaacgctatacttaatgatgattc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 nccattcattcaagctttgagatacttctttttaattaacgctatacttaatgatgattc 420


Query: 421 tgaaaagatttattcaagttggtataatcttggncattattttgattatactcaaaaatc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tgaaaagatttattcaagttggtataatcttggncattattttgattatactcaaaaatc 480


Query: 481 aaganagattcgttagagagattttaccacttgcaaatctttgtaaacacatctcatc 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aaganagattcgttagagagattttaccacttgcaaatctttgtaaacacatctcatc 538

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,662,895,427
Number of extensions: 114710660
Number of successful extensions: 9294072
Number of sequences better than 10.0: 252
Length of query: 1267
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1243
Effective length of database: 97,308,875,965
Effective search space: 120954932824495
Effective search space used: 120954932824495
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.30
Homology vs Protein 
Query= Contig-U11395-1 (Contig-U11395-1Q) /CSM_Contig/Contig-U11395-1Q.Seq.d
         (1267 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54Z20) RecName: Full=Putative calcium up-regulated protein J;        39   0.30
AF458173_1(AF458173|pid:none) Mus musculus clone B6F3MH130 immun...    38   0.88
CR380955_267(CR380955|pid:none) Candida glabrata strain CBS138 c...    37   1.1
AB121655_1(AB121655|pid:none) Mus musculus mRNA for immunoglobul...    37   1.5
AM293756_1(AM293756|pid:none) Rattus norvegicus partial mRNA for...    36   3.3
AF065378_1(AF065378|pid:none) Mus musculus clone W1GT422 immunog...    36   3.3
(P01755) RecName: Full=Ig heavy chain V region S43; Flags: Precu...    36   3.3
AF028665_1(AF028665|pid:none) Mus musculus clone 61GU0203 immuno...    36   3.3
U16687_1(U16687|pid:none) Mus musculus Ig heavy chain leader and...    36   3.3
AL844506_52(AL844506|pid:none) Plasmodium falciparum 3D7 chromos...    31   3.9
AY607099_1(AY607099|pid:none) Mus musculus clone 1H7 anti-TSHr i...    35   5.7
AE017263_355(AE017263|pid:none) Mesoplasma florum L1 complete ge...    35   5.7
CP000976_732(CP000976|pid:none) Borrelia duttonii Ly, complete g...    35   5.7
AB058083_1(AB058083|pid:none) Mus musculus V186.2-D-JH2-Calpha m...    35   7.4
AB121476_1(AB121476|pid:none) Mus musculus gene for immunoglobul...    35   7.4
CP000521_425(CP000521|pid:none) Acinetobacter baumannii ATCC 179...    35   7.4
AB058106_1(AB058106|pid:none) Mus musculus V186.2-D-JH2-Calpha m...    35   7.4
AB058068_1(AB058068|pid:none) Mus musculus V186.2-D-JH2-Calpha m...    35   7.4
CP000817_3626(CP000817|pid:none) Lysinibacillus sphaericus C3-41...    34   9.7
CP000102_209(CP000102|pid:none) Methanosphaera stadtmanae DSM 30...    34   9.7
AL031745_34(AL031745|pid:none) Plasmodium falciparum DNA from MA...    34   9.7
AL844501_43(AL844501|pid:none) Plasmodium falciparum strain 3D7,...    34   9.7

>(Q54Z20) RecName: Full=Putative calcium up-regulated protein J;
          Length = 655

 Score = 39.3 bits (90), Expect = 0.30
 Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
 Frame = +2

Query: 1010 NCEEFRKKIKLMLQHSVLKGHLSV-AQFLHDNKIGKQYLEELVNQNFADLISEDRLEIVE 1186
            N  + + K  + + ++++KG   + +Q+ + N     +  ELVN  + D IS+D  + ++
Sbjct: 199  NYTDEKLKAYIYISNNLIKGIDDIRSQYTNSNYSFNSFSNELVNMKYPDSISKDSFDEIK 258

Query: 1187 FLYQNNYISITDVDYIVNLFNN 1252
               Q+ +     VD I+NLFNN
Sbjct: 259  TQLQSEF---EQVDSIINLFNN 277

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,606,655,383
Number of extensions: 30384026
Number of successful extensions: 70201
Number of sequences better than 10.0: 22
Number of HSP's gapped: 70181
Number of HSP's successfully gapped: 24
Length of query: 422
Length of database: 1,040,966,779
Length adjustment: 131
Effective length of query: 291
Effective length of database: 621,205,444
Effective search space: 180770784204
Effective search space used: 180770784204
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.97  gvh: 0.49  alm: 0.25  top: 0.47  tms: 0.07  mit: 0.34  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.42  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 20.0 %: mitochondrial
	 20.0 %: cytoplasmic
	 12.0 %: Golgi
	 12.0 %: nuclear
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U11395-1 is end
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 1
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 1
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0