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Dicty_cDB
Contig List | Clone List | cDNA Library List
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U01765-1
Contig ID Contig-U01765-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U01765-1 (Contig-U01765-1Q) /CSM_Contig/Contig-U01765-1Q.Seq.d
TTTTTTTTTTAAAATTTTTCTTTTTTATTTTTATAGCTATTAATTATATA
TTATTTTTTTTTTTATATAAAAAAAACTTTATTAAAAAAAAAAAAAAAAC
TAAAATGTCACCAAGACCAGAGAGTATCAAGAAAGTAATGGATGTATTAG
GTGATTTTAATCCATCAGAAGATAAAATTAAGAAAACATTGGGTATAGAC
GAAGATGAAATGAGGATGATTAACGAAGAGAAAAACACCGTAATTTCACC
AGCAAAAGATAGAATCCCAATAAATAGAAAATTAACTAAAAAAGCTCAAG
ATACATTAGGAATTAATTTATCAAAAGAAAAATTAATGGATGTTTTAGGA
GTTGATGAAAATACAATAAATTGTGC
Gap no gap
Contig length 376
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 3150312
End point 3149935
Strand (PLUS/MINUS) MINUS
Number of clones 2
Number of EST 2
Link to clone list U01765
List of clone(s) 

est1=SSH123F,1,377
est2=VSF746Z,71,266
Translated Amino Acid sequence 
FFLKFFFFIFIAINYILFFFLYKKNFIKKKKKTKMSPRPESIKKVMDVLGDFNPSEDKIK
KTLGIDEDEMRMINEEKNTVISPAKDRIPINRKLTKKAQDTLGINLSKEKLMDVLGVDEN
TINC
Translated Amino Acid sequence (All Frames) 
Frame A:
fff*nfsflfl*lliiyyfffyikktllkkkkklkchqdqrvsrk*wmy*vilihqkikl
rkhwv*tkmk*g*ltkrktp*fhqqkiesq*ien*lkklkih*eliyqkkn*wmf*elmk
iq*iv


Frame B:
fffkiflfyfysy*lyiifffi*kkly*kkkkn*nvtktreyqesngcir*f*sirr*n*
enigyrrr*nedd*rrekhrnftskr*npnk*kin*kssryirn*fikrkingcfrs**k
ynklc


Frame C:
FFLKFFFFIFIAINYILFFFLYKKNFIKKKKKTKMSPRPESIKKVMDVLGDFNPSEDKIK
KTLGIDEDEMRMINEEKNTVISPAKDRIPINRKLTKKAQDTLGINLSKEKLMDVLGVDEN
TINC
own update 2004. 6. 7
Homology vs CSM-cDNA 
Query= Contig-U01765-1 (Contig-U01765-1Q)
/CSM_Contig/Contig-U01765-1Q.Seq.d
         (376 letters)

Database: CSM
           8361 sequences; 7,895,291 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U01765-1 (Contig-U01765-1Q) /CSM_Contig/Conti...   549  e-156
Contig-U04399-1 (Contig-U04399-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U10331-1 (Contig-U10331-1Q) /CSM_Contig/Conti...    36  0.036
Contig-U12535-1 (Contig-U12535-1Q) /CSM_Contig/Conti...    34  0.14
Contig-U12238-1 (Contig-U12238-1Q) /CSM_Contig/Conti...    34  0.14
Contig-U12037-1 (Contig-U12037-1Q) /CSM_Contig/Conti...    34  0.14
Contig-U10930-1 (Contig-U10930-1Q) /CSM_Contig/Conti...    34  0.14
Contig-U14396-1 (Contig-U14396-1Q) /CSM_Contig/Conti...    32  0.56

>Contig-U01765-1 (Contig-U01765-1Q) /CSM_Contig/Contig-U01765-1Q.Seq.d
          Length = 376

 Score =  549 bits (277), Expect = e-156
 Identities = 277/277 (100%)
 Strand = Plus / Plus

                                                                       
Query: 100 ctaaaatgtcaccaagaccagagagtatcaagaaagtaatggatgtattaggtgatttta 159
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 ctaaaatgtcaccaagaccagagagtatcaagaaagtaatggatgtattaggtgatttta 159

                                                                       
Query: 160 atccatcagaagataaaattaagaaaacattgggtatagacgaagatgaaatgaggatga 219
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 atccatcagaagataaaattaagaaaacattgggtatagacgaagatgaaatgaggatga 219

                                                                       
Query: 220 ttaacgaagagaaaaacaccgtaatttcaccagcaaaagatagaatcccaataaatagaa 279
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 ttaacgaagagaaaaacaccgtaatttcaccagcaaaagatagaatcccaataaatagaa 279

                                                                       
Query: 280 aattaactaaaaaagctcaagatacattaggaattaatttatcaaaagaaaaattaatgg 339
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 aattaactaaaaaagctcaagatacattaggaattaatttatcaaaagaaaaattaatgg 339

                                                
Query: 340 atgttttaggagttgatgaaaatacaataaattgtgc 376
           |||||||||||||||||||||||||||||||||||||
Sbjct: 340 atgttttaggagttgatgaaaatacaataaattgtgc 376


 Score = 38.2 bits (19), Expect = 0.009
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 65 atataaaaaaaactttatt 83
          |||||||||||||||||||
Sbjct: 65 atataaaaaaaactttatt 83


>Contig-U04399-1 (Contig-U04399-1Q) /CSM_Contig/Contig-U04399-1Q.Seq.d
          Length = 553

 Score = 38.2 bits (19), Expect = 0.009
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 321 tcaaaagaaaaattaatggatgtttta 347
           ||||||| ||||||||||| |||||||
Sbjct: 88  tcaaaagcaaaattaatggttgtttta 114


>Contig-U10331-1 (Contig-U10331-1Q) /CSM_Contig/Contig-U10331-1Q.Seq.d
          Length = 1345

 Score = 36.2 bits (18), Expect = 0.036
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 330  aaattaatggatgtttta 347
            ||||||||||||||||||
Sbjct: 1340 aaattaatggatgtttta 1323


  Database: CSM
    Posted date:  Jun 7, 2004  8:33 AM
  Number of letters in database: 7,895,291
  Number of sequences in database:  8361
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7296
Number of Sequences: 8361
Number of extensions: 7296
Number of successful extensions: 707
Number of sequences better than 10.0: 252
length of query: 376
length of database: 7,895,291
effective HSP length: 16
effective length of query: 360
effective length of database: 7,761,515
effective search space: 2794145400
effective search space used: 2794145400
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 5. 6
Homology vs DNA 
Query= Contig-U01765-1 (Contig-U01765-1Q) /CSM_Contig/Contig-U01765-1Q.Seq.d
         (376 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC115684) Dictyostelium discoideum chromosome 2 map 3108975...   454   e-140  2
(AU265723) Dictyostelium discoideum vegetative cDNA clone:VS...   331   1e-86  1
(AU073407) Dictyostelium discoideum slug cDNA, clone SSH123.      280   4e-71  1
(EJ857071) 1093017950298 Global-Ocean-Sampling_GS-30-02-01-1...    40   0.022  2
(EJ930647) 1093018803898 Global-Ocean-Sampling_GS-30-02-01-1...    40   0.024  2
(AC020641) Homo sapiens chromosome 10 clone RP11-222A11, com...    44   0.11   3
(AC230737) Bos taurus clone CH240-500I24, WORKING DRAFT SEQU...    40   0.16   4
(EV313539) G772P511FK9.T0 Culex pipiens quinquefasciatus Bac...    36   0.18   2
(L77117) Methanocaldococcus jannaschii DSM 2661, complete ge...    34   0.18   10
(AR584244) Sequence 1 from patent US 6797466.                      34   0.18   10
(AR271569) Sequence 1 from patent US 6503729.                      34   0.18   10
(CU311680) Equus caballus GSS, BAC clone CH241-198K1, T7 end...    44   0.20   2
(AC092328) Homo sapiens chromosome 5 clone RP11-15D23, WORKI...    36   0.26   4
(CU028551) Equus caballus GSS, BAC clone CH241-121D17, T7 en...    44   0.27   2
(ED770390) GM_WBb0145B09.r GM_WBb Glycine max genomic clone ...    36   0.30   2
(AC107736) Mus musculus chromosome 7, clone RP23-354B2, comp...    44   0.31   4
(AB444205) Clostridium perfringens plasmid pCP8533etx DNA, c...    36   0.32   4
(AC025445) Homo sapiens chromosome 5 clone CTD-2049O17, comp...    36   0.39   4
(EJ327525) 1092963402049 Global-Ocean-Sampling_GS-28-01-01-1...    36   0.66   2
(EJ868277) 1093018295271 Global-Ocean-Sampling_GS-30-02-01-1...    36   0.66   2
(EJ873747) 1093018358634 Global-Ocean-Sampling_GS-30-02-01-1...    36   0.67   2
(EJ238385) 1095326009956 Global-Ocean-Sampling_GS-27-01-01-1...    36   0.67   2
(EJ458606) 1093018378586 Global-Ocean-Sampling_GS-28-01-01-1...    36   0.67   2
(EJ572575) 1092960059078 Global-Ocean-Sampling_GS-29-01-01-1...    36   0.67   2
(EJ946570) 1093018917018 Global-Ocean-Sampling_GS-30-02-01-1...    36   0.67   2
(EJ344217) 1092963536085 Global-Ocean-Sampling_GS-28-01-01-1...    36   0.68   2
(EY206491) PRAG-aaa96e04.b1 Sand_fly_EST_Normalized Phleboto...    36   0.68   2
(FK811594) PRAG-aac82g02.g1 Sand_fly_EST_Normalized Phleboto...    36   0.68   2
(AY077834) Sheeppox virus NISKHI, complete genome.                 46   0.71   2
(AY077832) Sheeppox virus 10700-99 strain TU-V02127, complet...    46   0.71   2
(AY077833) Sheeppox virus A, complete genome.                      46   0.71   2
(AY077836) Goatpox virus G20-LKV, complete genome.                 46   0.94   1
(AY077835) Goatpox virus Pellor, complete genome.                  46   0.94   1
(AF409138) Lumpy skin disease virus isolate Neethling vaccin...    46   0.94   1
(AF409137) Lumpy skin disease virus NW-LW isolate Neethling ...    46   0.94   1
(AF325528) Lumpy skin disease virus NI-2490 isolate Neethlin...    46   0.94   1
(BV646437) S217P60589RH7.T0 Noemie Pan troglodytes troglodyt...    46   0.94   1
(AY553181) Glossotermes oculatus 16S ribosomal RNA gene, par...    46   0.94   1
(AC092415) Homo sapiens chromosome 3 clone RP11-9A14, comple...    46   0.94   1
(AC012001) Homo sapiens BAC clone RP11-465G21 from 2, comple...    46   0.94   1
(AC125734) Rattus norvegicus clone CH230-2P3, WORKING DRAFT ...    46   0.94   1
(FP236298) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   0.94   1
(AC012143) Homo sapiens clone RP11-11G20, WORKING DRAFT SEQU...    46   0.94   1
(DH257075) Oryzias latipes Fosmid clone:GOLWFno578_m21, forw...    46   0.94   1
(CP001098) Halothermothrix orenii H 168, complete genome.          46   0.94   1
(ER295343) 1092343642756 Global-Ocean-Sampling_GS-34-01-01-1...    34   1.2    2
(AX344558) Sequence 9 from Patent WO0200932.                       40   1.5    5
(DQ832717) Phytophthora sojae mitochondrion, complete genome.      38   1.6    3
(U11682) Trypanoplasma borelli mitochondrion cytochrome oxid...    40   1.8    2
(AC192729) Pan troglodytes BAC clone CH251-503N9 from chromo...    34   1.9    2
(AC114224) Rattus norvegicus clone CH230-320P19, *** SEQUENC...    42   2.1    5
(AE013035) Thermoanaerobacter tengcongensis MB4, section 62 ...    34   2.2    2
(EC066919) 426102 CK01 Drosophila melanogaster cDNA clone 17...    34   2.2    2
(DC219241) Plasmodium berghei strain ANKA cDNA clone:MZ00073...    34   2.5    2
(EK211335) 1095460100038 Global-Ocean-Sampling_GS-31-01-01-1...    32   3.2    3
(AC025453) Homo sapiens chromosome 5 clone CTD-2150A8, WORKI...    36   3.5    3
(ET290466) S0257A04_SP6 CHORI-214 Salmo salar genomic clone ...    36   3.6    2
(AM481747) Vitis vinifera contig VV78X033720.6, whole genome...    44   3.7    1
(AM425730) Vitis vinifera contig VV78X028470.16, whole genom...    44   3.7    1
(AL732416) Human DNA sequence from clone RP11-176N14 on chro...    44   3.7    1
(AL160192) Human chromosome 14 DNA sequence BAC R-226P1 of l...    44   3.7    1
(AC138315) Homo sapiens 3 BAC RP11-163K7 (Roswell Park Cance...    44   3.7    1
(AC127139) Rattus norvegicus clone CH230-59N22, *** SEQUENCI...    44   3.7    1
(AC109373) Rattus norvegicus clone CH230-252B20, *** SEQUENC...    44   3.7    1
(AC106184) Rattus norvegicus clone CH230-60A19, *** SEQUENCI...    44   3.7    1
(EF517600) Zea mays chromosome 3 clone BACs ZMMBBb0345O22, Z...    44   3.7    1
(AC092367) Homo sapiens chromosome 16 clone RP11-46B3, WORKI...    44   3.7    1
(AC194400) Zea mays chromosome 1 clone ZMMBBb-638J2; ZMMBBb0...    44   3.7    1
(AC023327) Homo sapiens chromosome 12 clone RP11-462N11 map ...    44   3.7    1
(AZ670446) ENTGZ44TR Entamoeba histolytica Sheared DNA Entam...    44   3.7    1
(AZ532359) ENTBY42TF Entamoeba histolytica Sheared DNA Entam...    44   3.7    1
(FI272371) CccaBb036-G12JF CccABb Cajanus cajan genomic clon...    44   3.7    1
(FI260397) CccaBb035-F9JF CccABb Cajanus cajan genomic clone...    44   3.7    1
(ER982879) MUGQ_CH252P307E11T7_CP496_044 CHORI-252 Vervet Mo...    44   3.7    1
(ER538356) 1093015886794 Global-Ocean-Sampling_GS-35-01-01-1...    44   3.7    1
(EJ978011) 1093022133135 Global-Ocean-Sampling_GS-30-02-01-1...    44   3.7    1
(EJ858157) 1093017957860 Global-Ocean-Sampling_GS-30-02-01-1...    44   3.7    1
(AQ279320) CITBI-E1-2516H5.TF CITBI-E1 Homo sapiens genomic ...    44   3.7    1
(AQ269077) RPCI11-69F19.TJ RPCI-11 Homo sapiens genomic clon...    44   3.7    1
(EJ618312) 1092963039288 Global-Ocean-Sampling_GS-29-01-01-1...    44   3.7    1
(EJ599965) 1092961133454 Global-Ocean-Sampling_GS-29-01-01-1...    44   3.7    1
(EJ538785) 1092955339926 Global-Ocean-Sampling_GS-29-01-01-1...    44   3.7    1
(EJ417739) 1093012197836 Global-Ocean-Sampling_GS-28-01-01-1...    44   3.7    1
(EJ291086) 1095383001715 Global-Ocean-Sampling_GS-27-01-01-1...    44   3.7    1
(EJ211481) 1092347005745 Global-Ocean-Sampling_GS-27-01-01-1...    44   3.7    1
(EJ204983) 1092344333756 Global-Ocean-Sampling_GS-27-01-01-1...    44   3.7    1
(EI396940) MUGQ_CH252P211J14T7_CN333_055 CHORI-252 Vervet Mo...    44   3.7    1
(ED385644) AUAC-aas38g12.g1 Ascaris suum whole genome shotgu...    44   3.7    1
(DU042538) 155861 Tomato HindIII BAC Library Solanum lycoper...    44   3.7    1
(CL285671) ZMMBBb0630D07f ZMMBBb (HindIII) Zea mays subsp. m...    44   3.7    1
(CG833571) ZMMBBc0130M23f ZMMBBc (EcoRI) Zea mays subsp. may...    44   3.7    1
(CC147042) ZMMBBb0009H09.r ZMMBBb Zea mays subsp. mays genom...    44   3.7    1
(EH622920) CHO_SL020xn19f1.ab1 CHO_SL Nicotiana tabacum cDNA...    44   3.7    1
(DV144311) CV03136A2A09.f1 CV03-normalized library Euphorbia...    44   3.7    1
(DV128246) CV03050A2H07.f1 CV03-normalized library Euphorbia...    44   3.7    1
(DT766663) EST1200512 Aquilegia cDNA library Aquilegia formo...    44   3.7    1
(DT766662) EST1200511 Aquilegia cDNA library Aquilegia formo...    44   3.7    1
(DT762119) EST1195968 Aquilegia cDNA library Aquilegia formo...    44   3.7    1
(DT762118) EST1195967 Aquilegia cDNA library Aquilegia formo...    44   3.7    1
(DT754863) EST1188712 Aquilegia cDNA library Aquilegia formo...    44   3.7    1
(DT754862) EST1188711 Aquilegia cDNA library Aquilegia formo...    44   3.7    1
(DT752214) EST1186063 Aquilegia cDNA library Aquilegia formo...    44   3.7    1
(DT752213) EST1186062 Aquilegia cDNA library Aquilegia formo...    44   3.7    1
(DT751444) EST1185293 Aquilegia cDNA library Aquilegia formo...    44   3.7    1
(DT751443) EST1185292 Aquilegia cDNA library Aquilegia formo...    44   3.7    1
(DT744889) EST1178738 Aquilegia cDNA library Aquilegia formo...    44   3.7    1
(DT744888) EST1178737 Aquilegia cDNA library Aquilegia formo...    44   3.7    1
(DT744691) EST1178540 Aquilegia cDNA library Aquilegia formo...    44   3.7    1
(DT744690) EST1178539 Aquilegia cDNA library Aquilegia formo...    44   3.7    1
(DR930491) EST1122030 Aquilegia cDNA library Aquilegia formo...    44   3.7    1
(DR930490) EST1122029 Aquilegia cDNA library Aquilegia formo...    44   3.7    1
(DR928664) EST1120203 Aquilegia cDNA library Aquilegia formo...    44   3.7    1
(DR928663) EST1120202 Aquilegia cDNA library Aquilegia formo...    44   3.7    1
(DR926300) EST1117839 Aquilegia cDNA library Aquilegia formo...    44   3.7    1
(DR926299) EST1117838 Aquilegia cDNA library Aquilegia formo...    44   3.7    1
(DR918580) EST1110119 Aquilegia cDNA library Aquilegia formo...    44   3.7    1
(DR916755) EST1108294 Aquilegia cDNA library Aquilegia formo...    44   3.7    1
(DR916754) EST1108293 Aquilegia cDNA library Aquilegia formo...    44   3.7    1
(CV297953) EST886412 petunia floral post-pollination cDNA li...    44   3.7    1
(CV297902) EST886361 petunia floral post-pollination cDNA li...    44   3.7    1
(FD465332) LARWB06TF Haematobia irritans 1st Instar Larvae H...    44   3.7    1
(CP001425) Borrelia burgdorferi 64b plasmid 64b_lp36, comple...    44   3.7    1
(CP001374) Borrelia burgdorferi 72a plasmid 72a_lp36, comple...    44   3.7    1
(CP001260) Borrelia burgdorferi 156a plasmid 156a_lp36, comp...    44   3.7    1
(CP001201) Borrelia burgdorferi ZS7 plasmid ZS7_lp36, comple...    44   3.7    1
(CP001198) Borrelia burgdorferi ZS7 plasmid ZS7_lp25, comple...    44   3.7    1
(AE001584) Borrelia burgdorferi B31 plasmid lp56, complete s...    44   3.7    1
(AE000788) Borrelia burgdorferi B31 plasmid lp36, complete s...    44   3.7    1
(AE000785) Borrelia burgdorferi B31 plasmid lp25, complete s...    44   3.7    1
(AC161887) Mus musculus 6 BAC RP23-75P5 (Roswell Park Cancer...    38   3.8    2
(ER417213) 1092963677231 Global-Ocean-Sampling_GS-35-01-01-1...    34   3.8    2
(EK394281) 1095469514209 Global-Ocean-Sampling_GS-31-01-01-1...    36   4.1    2
(CT009705) Zebrafish DNA sequence from clone DKEYP-81C5 in l...    34   5.1    4
(CT772851) Paramecium tetraurelia 5-PRIME EST from clone LK0...    40   5.4    2
(BX842692) Zebrafish DNA sequence from clone DKEY-71H2 in li...    38   5.6    3
(AC162490) Bos taurus clone CH240-117E3, WORKING DRAFT SEQUE...    32   6.8    2
(AJ235270) Rickettsia prowazekii strain Madrid E, complete g...    36   7.5    5
(AC090041) Homo sapiens 12 BAC RP11-239F20 (Roswell Park Can...    38   7.5    3
(AC120366) Mus musculus chromosome 1, clone RP24-294P1, comp...    34   8.9    4
(EK155097) 1095458001663 Global-Ocean-Sampling_GS-31-01-01-1...    32   9.2    2
(BX649404) Zebrafish DNA sequence from clone CH211-285O15 in...    38   9.7    2

>(AC115684) Dictyostelium discoideum chromosome 2 map 3108975-3191114
             strain AX4, complete sequence.
          Length = 82139

 Score =  454 bits (229), Expect(2) = e-140
 Identities = 232/233 (99%)
 Strand = Plus / Plus


Query: 100   ctaaaatgtcaccaagaccagagagtatcaagaaagtaatggatgtattaggtgatttta 159
             ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54548 ctaaaatgtcaccaaaaccagagagtatcaagaaagtaatggatgtattaggtgatttta 54607


Query: 160   atccatcagaagataaaattaagaaaacattgggtatagacgaagatgaaatgaggatga 219
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54608 atccatcagaagataaaattaagaaaacattgggtatagacgaagatgaaatgaggatga 54667


Query: 220   ttaacgaagagaaaaacaccgtaatttcaccagcaaaagatagaatcccaataaatagaa 279
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54668 ttaacgaagagaaaaacaccgtaatttcaccagcaaaagatagaatcccaataaatagaa 54727


Query: 280   aattaactaaaaaagctcaagatacattaggaattaatttatcaaaagaaaaa 332
             |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54728 aattaactaaaaaagctcaagatacattaggaattaatttatcaaaagaaaaa 54780

 Score = 89.7 bits (45), Expect(2) = e-140
 Identities = 48/49 (97%)
 Strand = Plus / Plus


Query: 328   aaaaattaatggatgttttaggagttgatgaaaatacaataaattgtgc 376
             |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54938 aaaagttaatggatgttttaggagttgatgaaaatacaataaattgtgc 54986

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 433,318,581
Number of extensions: 27161375
Number of successful extensions: 2440925
Number of sequences better than 10.0: 141
Length of query: 376
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 353
Effective length of database: 99,442,330,388
Effective search space: 35103142626964
Effective search space used: 35103142626964
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 7.18
Homology vs Protein 
Query= Contig-U01765-1 (Contig-U01765-1Q) /CSM_Contig/Contig-U01765-1Q.Seq.d
         (376 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115684_18(AC115684|pid:none) Dictyostelium discoideum chromoso...   179   3e-44
AY813396_1(AY813396|pid:none) Schistosoma japonicum SJCHGC09371 ...    33   2.4
AM778916_22(AM778916|pid:none) Microcystis aeruginosa PCC 7806 g...    33   4.0
AP009256_715(AP009256|pid:none) Bifidobacterium adolescentis ATC...    33   4.0
CP001111_3566(CP001111|pid:none) Stenotrophomonas maltophilia R5...    32   5.3
CP000943_167(CP000943|pid:none) Methylobacterium sp. 4-46, compl...    32   6.9
FN357337_21(FN357337|pid:none) Schistosoma mansoni genome sequen...    32   9.0
EU934241_1(EU934241|pid:none) Bemisia tabaci heat shock protein ...    32   9.0
DQ093382_1(DQ093382|pid:none) Bemisia tabaci clone 90(1) 90 kDa ...    32   9.0
DQ093380_1(DQ093380|pid:none) Bemisia tabaci clone 901 90 kDa he...    32   9.0
AE017243_629(AE017243|pid:none) Mycoplasma hyopneumoniae J, comp...    32   9.0
CP001618_2279(CP001618|pid:none) Beutenbergia cavernae DSM 12333...    32   9.0

>AC115684_18(AC115684|pid:none) Dictyostelium discoideum chromosome
           2 map 3108975-3191114 strain AX4, complete sequence.
          Length = 220

 Score =  179 bits (454), Expect = 3e-44
 Identities = 89/90 (98%), Positives = 90/90 (100%)
 Frame = +3

Query: 105 MSPRPESIKKVMDVLGDFNPSEDKIKKTLGIDEDEMRMINEEKNTVISPAKDRIPINRKL 284
           MSP+PESIKKVMDVLGDFNPSEDKIKKTLGIDEDEMRMINEEKNTVISPAKDRIPINRKL
Sbjct: 1   MSPKPESIKKVMDVLGDFNPSEDKIKKTLGIDEDEMRMINEEKNTVISPAKDRIPINRKL 60

Query: 285 TKKAQDTLGINLSKEKLMDVLGVDENTINC 374
           TKKAQDTLGINLSKEKLMDVLGVDENTINC
Sbjct: 61  TKKAQDTLGINLSKEKLMDVLGVDENTINC 90

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 368,756,416
Number of extensions: 5869712
Number of successful extensions: 15178
Number of sequences better than 10.0: 12
Number of HSP's gapped: 15174
Number of HSP's successfully gapped: 13
Length of query: 125
Length of database: 1,051,180,864
Length adjustment: 91
Effective length of query: 34
Effective length of database: 756,653,995
Effective search space: 25726235830
Effective search space used: 25726235830
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 29 (15.8 bits)
PSORT 

 psg: 1.03  gvh: 0.32  alm: 0.19  top: 0.93  tms: 0.07  mit: 0.36  mip: 0.07
 nuc: 0.20  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U01765-1 is nuc
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0