Contig-U01764-1
Contig ID Contig-U01764-1
Contig update 2001. 8.29
Contig sequence
>Contig-U01764-1 (Contig-U01764-1Q) /CSM_Contig/Contig-U01764-1Q.Seq.d
ATACATTTATCATTTCAACTAATAATAAATAATAATTATAACCAATTATA
AGTCATTGCACGTGGTTTCCAAATAAAAAAAAATTATATTATATTTAGTA
TTATTAAAAATTTAATTTTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAA

Gap no gap
Contig length 159
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 5491435
End point 5491594
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U01764
List of clone(s)

est1=SSH115F,1,160
Translated Amino Acid sequence
ihlsfqliinnnynql*VIARGFQIKKNYIIFSIIKNLILQKKKKKKKKKKKK


Translated Amino Acid sequence (All Frames)
Frame A:
ihlsfqliinnnynql*VIARGFQIKKNYIIFSIIKNLILQKKKKKKKKKKKK


Frame B:
yiyhfn***iiiitnykslhvvsk*kkiilylvllki*fykkkkkkkkkkkk


Frame C:
tfiistnnk**l*piishctwfpnkkklyyi*yy*kfnftkkkkkkkkkkkk


own update 2004. 6. 7
Homology vs CSM-cDNA
Query= Contig-U01764-1 (Contig-U01764-1Q)
/CSM_Contig/Contig-U01764-1Q.Seq.d
(159 letters)

Database: CSM
8361 sequences; 7,895,291 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U01764-1 (Contig-U01764-1Q) /CSM_Contig/Conti... 137 5e-33
Contig-U11850-1 (Contig-U11850-1Q) /CSM_Contig/Conti... 42 2e-04
Contig-U10851-1 (Contig-U10851-1Q) /CSM_Contig/Conti... 42 2e-04
Contig-U11817-1 (Contig-U11817-1Q) /CSM_Contig/Conti... 38 0.004
Contig-U06627-1 (Contig-U06627-1Q) /CSM_Contig/Conti... 38 0.004
Contig-U05816-1 (Contig-U05816-1Q) /CSM_Contig/Conti... 38 0.004
Contig-U13691-1 (Contig-U13691-1Q) /CSM_Contig/Conti... 36 0.014
Contig-U13448-1 (Contig-U13448-1Q) /CSM_Contig/Conti... 36 0.014
Contig-U13444-1 (Contig-U13444-1Q) /CSM_Contig/Conti... 36 0.014
Contig-U13310-1 (Contig-U13310-1Q) /CSM_Contig/Conti... 36 0.014

>Contig-U01764-1 (Contig-U01764-1Q) /CSM_Contig/Contig-U01764-1Q.Seq.d
Length = 159

Score = 137 bits (69), Expect = 5e-33
Identities = 69/69 (100%)
Strand = Plus / Plus


Query: 1 atacatttatcatttcaactaataataaataataattataaccaattataagtcattgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atacatttatcatttcaactaataataaataataattataaccaattataagtcattgca 60


Query: 61 cgtggtttc 69
|||||||||
Sbjct: 61 cgtggtttc 69


>Contig-U11850-1 (Contig-U11850-1Q) /CSM_Contig/Contig-U11850-1Q.Seq.d
Length = 1080

Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus


Query: 21 aataataaataataattataa 41
|||||||||||||||||||||
Sbjct: 957 aataataaataataattataa 977


Score = 30.2 bits (15), Expect = 0.89
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 21 aataataaataataa 35
|||||||||||||||
Sbjct: 950 aataataaataataa 964


Score = 30.2 bits (15), Expect = 0.89
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 21 aataataaataataa 35
|||||||||||||||
Sbjct: 936 aataataaataataa 950


Score = 30.2 bits (15), Expect = 0.89
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 21 aataataaataataa 35
|||||||||||||||
Sbjct: 943 aataataaataataa 957


>Contig-U10851-1 (Contig-U10851-1Q) /CSM_Contig/Contig-U10851-1Q.Seq.d
Length = 1858

Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus


Query: 21 aataataaataataattataa 41
|||||||||||||||||||||
Sbjct: 191 aataataaataataattataa 211


Score = 28.2 bits (14), Expect = 3.5
Identities = 14/14 (100%)
Strand = Plus / Plus


Query: 22 ataataaataataa 35
||||||||||||||
Sbjct: 185 ataataaataataa 198


Database: CSM
Posted date: Jun 7, 2004 8:33 AM
Number of letters in database: 7,895,291
Number of sequences in database: 8361

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5220
Number of Sequences: 8361
Number of extensions: 5220
Number of successful extensions: 2729
Number of sequences better than 10.0: 560
length of query: 159
length of database: 7,895,291
effective HSP length: 15
effective length of query: 144
effective length of database: 7,769,876
effective search space: 1118862144
effective search space used: 1118862144
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 5. 6
Homology vs DNA
Query= Contig-U01764-1 (Contig-U01764-1Q) /CSM_Contig/Contig-U01764-1Q.Seq.d
(159 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU073404) Dictyostelium discoideum slug cDNA, clone SSH115. 139 3e-29 1
(EY337304) CAWY8239.rev CAWY Helobdella robusta Subtracted E... 50 0.023 1
(EY312585) CAWX24096.rev CAWX Helobdella robusta Primary Ear... 50 0.023 1
(EY300468) CAWX15038.rev CAWX Helobdella robusta Primary Ear... 50 0.023 1
(AQ243555) HS_2061_B1_D07_MR CIT Approved Human Genomic Sper... 38 0.073 2
(FG995542) GLLEK36TR JCVI-SOY1 Glycine max cDNA 5', mRNA seq... 48 0.092 1
(AC176994) Strongylocentrotus purpuratus clone R3-1103A15, W... 36 0.31 3
(CU927916) Zebrafish DNA sequence from clone CH1073-258J7 in... 46 0.36 1
(AC138245) Mus musculus chromosome 17, clone RP23-75D10, com... 46 0.36 1
(CU302417) Platypus DNA sequence from clone CLM1-378I11. 46 0.36 1
(EK340876) 1095467060804 Global-Ocean-Sampling_GS-31-01-01-1... 46 0.36 1
(AM609108) Entamoeba invadens IP1 GSS, clone inv097d11.q1k. 46 0.36 1
(BX195762) Danio rerio genomic clone DKEY-217F18, genomic su... 46 0.36 1
(EY379805) CAXA17991.fwd CAXA Helobdella robusta Subtracted ... 46 0.36 1
(AC141747) Apis mellifera clone CH224-58F1, WORKING DRAFT SE... 38 0.42 2
(AC171127) Helobdella robusta clone CH306-1A1, complete sequ... 32 0.80 2
(AC171131) Helobdella robusta clone CH306-1A2, complete sequ... 32 0.80 2
(AX344572) Sequence 23 from Patent WO0200932. 42 0.93 2
(AM459516) Vitis vinifera contig VV78X164315.2, whole genome... 34 0.96 2
(AQ880124) HS_4869_B1_D06_T7A CIT Approved Human Genomic Spe... 32 1.0 2
(CU694755) Zebrafish DNA sequence from clone CH1073-458H17 i... 44 1.4 1
(CU459122) Zebrafish DNA sequence from clone CH73-329B19 in ... 44 1.4 1
(CU326348) Zebrafish DNA sequence from clone CH211-190M22 in... 44 1.4 1
(CU280645) Zebrafish DNA sequence from clone DKEY-172H23. 44 1.4 1
(CU179754) Zebrafish DNA sequence from clone CH211-188B5. 44 1.4 1
(CU138540) Zebrafish DNA sequence from clone DKEY-210M15 Con... 44 1.4 1
(CU062504) Zebrafish DNA sequence from clone CH73-373E20 in ... 44 1.4 1
(CT943666) Zebrafish DNA sequence from clone CH73-83C16 in l... 44 1.4 1
(CR788226) Zebrafish DNA sequence from clone DKEY-205F16 in ... 44 1.4 1
(CR762422) Zebrafish DNA sequence from clone CH211-184I23 in... 44 1.4 1
(CR450698) Zebrafish DNA sequence from clone DKEY-49C17 in l... 44 1.4 1
(CR392362) Zebrafish DNA sequence from clone DKEY-5B19 in li... 44 1.4 1
(CR381630) Zebrafish DNA sequence from clone CH211-234G24 in... 44 1.4 1
(BX649639) Zebrafish DNA sequence from clone CH211-102G22 in... 44 1.4 1
(BX649271) Zebrafish DNA sequence from clone DKEY-45G1 in li... 44 1.4 1
(BX571670) Zebrafish DNA sequence from clone DKEY-153J7 in l... 44 1.4 1
(BX511083) Zebrafish DNA sequence from clone CH211-195F22 in... 44 1.4 1
(BX276188) Zebrafish DNA sequence from clone CH211-245A19. 44 1.4 1
(BX119979) Zebrafish DNA sequence from clone CH211-201G8 in ... 44 1.4 1
(BX005095) Zebrafish DNA sequence from clone CH211-189B21. 44 1.4 1
(BX004784) Zebrafish DNA sequence from clone DKEY-82I7 in li... 44 1.4 1
(AL713996) Zebrafish DNA sequence from clone BUSM1-201C3 in ... 44 1.4 1
(AC167197) Mus musculus chromosome 1, clone RP23-62B14, comp... 44 1.4 1
(AC159977) Mus musculus chromosome 5, clone RP24-121I11, com... 44 1.4 1
(AC131699) Mus musculus BAC clone RP23-440F17 from 1, comple... 44 1.4 1
(AC004093) Mus musculus (129SV) DNA, unmapped BAC 10817, com... 44 1.4 1
(AC206042) Pongo abelii BAC clone CH276-105C2 from chromosom... 44 1.4 1
(AC196938) Pan troglodytes BAC clone CH251-620H13 from chrom... 44 1.4 1
(AC192178) Pan troglodytes BAC clone CH251-399F5 from chromo... 44 1.4 1
(EF014412) Neocallimastix frontalis RNA polymerase II second... 44 1.4 1
(AM448069) Vitis vinifera contig VV78X274112.9, whole genome... 44 1.4 1
(AM446019) Vitis vinifera contig VV78X070138.9, whole genome... 44 1.4 1
(AC217585) Populus trichocarpa clone POP021-H02, complete se... 44 1.4 1
(AC147873) Monodelphis domestica clone VMRC6-582D4, complete... 44 1.4 1
(DQ518058) Pettalus sp. 266L 16S ribosomal RNA gene, partial... 44 1.4 1
(CR382399) Plasmodium falciparum chromosome 6, complete sequ... 44 1.4 1
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 44 1.4 1
(AC105343) Homo sapiens BAC clone RP11-423J7 from 4, complet... 44 1.4 1
(AC092098) Homo sapiens BAC clone RP11-533K11 from 7, comple... 44 1.4 1
(AC120098) Rattus norvegicus clone CH230-182F24, *** SEQUENC... 44 1.4 1
(AC106690) Rattus norvegicus clone CH230-93M17, WORKING DRAF... 44 1.4 1
(CU862080) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 1.4 1
(CT583633) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 1.4 1
(CT573276) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 1.4 1
(CT025729) D.miranda DNA sequence *** SEQUENCING IN PROGRESS... 44 1.4 1
(BX511114) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 1.4 1
(AC180832) Strongylocentrotus purpuratus clone R3-3025E24, W... 44 1.4 1
(AC179071) Strongylocentrotus purpuratus clone R3-4009E18, W... 44 1.4 1
(AY066740) Schmidtea mediterranea clone H.83.6d unknown mRNA... 44 1.4 1
(AZ398040) 1M0163I15F Mouse 10kb plasmid UUGC1M library Mus ... 44 1.4 1
(FH235097) CHO_OF3428xo23r1.ab1 CHO_OF3 Nicotiana tabacum ge... 44 1.4 1
(FH208815) CHO_OF3166xm24r1.ab1 CHO_OF3 Nicotiana tabacum ge... 44 1.4 1
(ET078082) QM0AAB6AE08FM2 CCER1 Citrus clementina genomic cl... 44 1.4 1
(EJ208272) 1092345169202 Global-Ocean-Sampling_GS-27-01-01-1... 44 1.4 1
(EJ095539) 1095462006382 Global-Ocean-Sampling_GS-26-01-01-1... 44 1.4 1
(EJ068382) 1095458061078 Global-Ocean-Sampling_GS-26-01-01-1... 44 1.4 1
(EJ065329) 1095458034970 Global-Ocean-Sampling_GS-26-01-01-1... 44 1.4 1
(EJ033661) 1095454062588 Global-Ocean-Sampling_GS-26-01-01-1... 44 1.4 1
(ED747517) GM_WBb0112E12.f GM_WBb Glycine max genomic clone ... 44 1.4 1
(ED123367) AUAC-aay64b09.b1 Ascaris suum whole genome shotgu... 44 1.4 1
(DE859331) Macropus eugenii DNA, BAC clone: MEB1-025F11_R, 3... 44 1.4 1
(DE055284) Oryzias latipes DNA, clone: ola1-026A22.R, genomi... 44 1.4 1
(CW153400) 104_555_11145026_148_36341_013 Sorghum methylatio... 44 1.4 1
(CU846955) A BAC library has been constructed from PN40024 g... 44 1.4 1
(CT505858) A BAC library has been constructed from cultivar ... 44 1.4 1
(AG486826) Mus musculus molossinus DNA, clone:MSMg01-383B03.... 44 1.4 1
(CC294477) CH261-43F14_RM1.1 CH261 Gallus gallus genomic clo... 44 1.4 1
(CC188600) CH261-9P2_RM1.1 CH261 Gallus gallus genomic clone... 44 1.4 1
(EL720904) CBSS3887.rev NICHD_XGC_tropSp1 Xenopus (Silurana)... 44 1.4 1
(EG416192) SAAH-aab45g06.b1 Agen 0058 Schmidtea mediterranea... 44 1.4 1
(EG353373) SAAH-aad40g03.b1 Agen 0058 Schmidtea mediterranea... 44 1.4 1
(EC618069) SAAH-aaa63h08.g1 Agen 0058 Schmidtea mediterranea... 44 1.4 1
(DY770972) 5TH_new01_D01 Bicyclus anynana wings - 5TH instar... 44 1.4 1
(DY260693) KN0AAP13YF05FM1 Fruit-TF Citrus clementina cDNA 5... 44 1.4 1
(DN048681) JGI_CABA5229.rev NIH_XGC_tropKid1 Xenopus (Silura... 44 1.4 1
(DB889447) Populus nigra mRNA, clone: PnFL2-083_I13, 5'end. 44 1.4 1
(CA117342) SCBFLR1005E12.g LR1 Saccharum officinarum cDNA cl... 44 1.4 1
(GE726279) CBUH6973.g1 B.anynana_wing.LCPP_2-10kb Bicyclus a... 44 1.4 1
(FF336240) 280462762 Pea aphid whole body normalized full le... 44 1.4 1
(FF296400) 279313048 Pea aphid whole body normalized full le... 44 1.4 1
(EY870291) CL06-C4-500-044-E06-CT.F Rangpur lime root, green... 44 1.4 1
(EY496941) CBBP3246.fwd CBBP Hirudo medicinalis hermaphrodit... 44 1.4 1
(EY493732) CBBP19624.rev CBBP Hirudo medicinalis hermaphrodi... 44 1.4 1
(EY488088) CBBP16209.fwd CBBP Hirudo medicinalis hermaphrodi... 44 1.4 1
(EY488087) CBBP16209.rev CBBP Hirudo medicinalis hermaphrodi... 44 1.4 1
(EY480105) CBBP10646.rev CBBP Hirudo medicinalis hermaphrodi... 44 1.4 1
(EY345787) CAWZ14271.rev CAWZ Helobdella robusta Primary Lat... 44 1.4 1
(EY303659) CAWX16834.rev CAWX Helobdella robusta Primary Ear... 44 1.4 1
(EY299631) CAWX14573.rev CAWX Helobdella robusta Primary Ear... 44 1.4 1
(EY294947) CAWX11976.rev CAWX Helobdella robusta Primary Ear... 44 1.4 1
(EY293799) CAWX11327.rev CAWX Helobdella robusta Primary Ear... 44 1.4 1
(EX631934) 256339899 Pea aphid whole body normalized full le... 44 1.4 1
(CP000551) Prochlorococcus marinus str. AS9601, complete gen... 44 1.4 1
(CZ156160) OG_ABa0002H07.f OG_ABa Oryza granulata genomic cl... 34 2.3 2
(AF250284) Amsacta moorei entomopoxvirus, complete genome. 34 2.8 2
(AC214997) Populus trichocarpa clone POP013-F22, complete se... 34 2.9 2
(AX392737) Sequence 27 from Patent WO0212526. 34 3.1 2
(AR707084) Sequence 27 from patent US 6933145. 34 3.1 2
(CG752447) P047-1-G09.za Ppa EcoRI BAC Library Pristionchus ... 32 3.7 2
(EX278868) 1565772_5_H18_073 PY06 Carica papaya cDNA, mRNA s... 32 3.7 2
(EX283038) 1570493_5_M11_036 PY06 Carica papaya cDNA, mRNA s... 32 3.7 2
(EX256779) 1437111_5_K21_085 PY06 Carica papaya cDNA, mRNA s... 32 3.7 2
(EX278276) 1565104_5_L22_085 PY06 Carica papaya cDNA, mRNA s... 32 3.8 2
(EX282364) 1569615_5_H21_089 PY06 Carica papaya cDNA, mRNA s... 32 3.8 2
(EX283813) 1571053_5_D19_078 PY06 Carica papaya cDNA, mRNA s... 32 3.8 2
(AY929925) Vannella sp. strain ISO13/I internal transcribed ... 30 3.8 2
(AC177489) Strongylocentrotus purpuratus clone R3-1030A24, W... 36 4.4 2
(AC129220) Mus musculus BAC clone RP24-475J22 from chromosom... 38 5.5 2
(CU694210) Zebrafish DNA sequence from clone CH73-52D20 in l... 42 5.7 1
(CU463283) Zebrafish DNA sequence from clone CH211-226M13. 42 5.7 1
(CU459136) Zebrafish DNA sequence from clone DKEYP-1D11 in l... 42 5.7 1
(CT573200) Zebrafish DNA sequence from clone CH211-262N19 in... 42 5.7 1
(CR854964) Zebrafish DNA sequence from clone DKEY-58J19 in l... 42 5.7 1
(CR848707) Zebrafish DNA sequence from clone CH211-276P5 in ... 42 5.7 1
(CR762484) Zebrafish DNA sequence from clone DKEY-264D12 in ... 42 5.7 1
(CR628386) Zebrafish DNA sequence from clone CH211-241O7 in ... 42 5.7 1
(CR381684) Zebrafish DNA sequence from clone CH211-28P3 in l... 42 5.7 1
(BX936312) Zebrafish DNA sequence from clone DKEY-204O5 in l... 42 5.7 1
(BX927408) Zebrafish DNA sequence from clone DKEY-30I4 in li... 42 5.7 1
(BX897662) Zebrafish DNA sequence from clone DKEYP-118G6 in ... 42 5.7 1
(BX005205) Zebrafish DNA sequence from clone DKEY-210P14 in ... 42 5.7 1
(BX005052) Zebrafish DNA sequence from clone CH211-42O7 in l... 42 5.7 1
(BX000523) Zebrafish DNA sequence from clone CH211-161N23 in... 42 5.7 1
(AL935302) Zebrafish DNA sequence from clone DKEY-13N1 in li... 42 5.7 1
(BV570270) G591P60050RB1.T1 Clint Pan troglodytes verus STS ... 42 5.7 1
(AL395367) T7 end of clone AR0AA023C07 of library AR0AA from... 42 5.7 1
(AL645855) Mouse DNA sequence from clone RP23-122N23 on chro... 42 5.7 1
(AL606929) Mouse DNA sequence from clone RP23-139J21 on chro... 42 5.7 1
(AC193421) Mus musculus BAC clone CH36-338N11 from chromosom... 42 5.7 1
(AC183431) Mus musculus BAC clone RP24-128G23 from chromosom... 42 5.7 1
(AC175710) Mus musculus BAC clone RP24-44O16 from chromosome... 42 5.7 1
(AC140925) Mus musculus BAC clone RP24-140B17 from chromosom... 42 5.7 1
(AC115848) Mus musculus chromosome 3, clone RP24-248L23, com... 42 5.7 1
(AC107781) Mus musculus, clone RP23-56O1, complete sequence. 42 5.7 1
(AC107754) Mus musculus chromosome 7, clone RP23-231J2, comp... 42 5.7 1
(AC209654) Macaca mulatta BAC CH250-398G14 (Children's Hosp... 42 5.7 1
(AC196450) Pan troglodytes BAC clone CH251-508F21 from chrom... 42 5.7 1
(DQ984942) Medicago truncatula Ser/Thr protein kinase (PRK),... 42 5.7 1
(DQ067261) Viola pubescens var. scabriuscula clone Vpub-60 m... 42 5.7 1
(AP010816) Solanum lycopersicum DNA, chromosome 8, clone: C0... 42 5.7 1
(AP010256) Solanum lycopersicum DNA, chromosome 8, clone: C0... 42 5.7 1
(AP009715) Lotus japonicus genomic DNA, clone: LjT11K12, TM1... 42 5.7 1
(AM989989) Zygosaccharomyces rouxii strain CBS 732 Contig10. 42 5.7 1
(AF546863) Rhodobryum umbraculum atpB-rbcL intergenic spacer... 42 5.7 1
(AF546861) Rhodobryum keniae atpB-rbcL intergenic spacer, pa... 42 5.7 1
(AF241279) Euglena deses photosystem II protein K (psbK), hy... 42 5.7 1
(AC170580) Medicago truncatula chromosome 7 clone mte1-32m6,... 42 5.7 1
(AC145021) Medicago truncatula clone mth2-23a16, complete se... 42 5.7 1
(DD010736) Diagnosis of known genetic Parameters within the ... 42 5.7 1
(CS468864) Sequence 55 from Patent EP1748080. 42 5.7 1
(CS468863) Sequence 54 from Patent EP1748080. 42 5.7 1
(CS419341) Sequence 55 from Patent WO2006094836. 42 5.7 1
(CS419340) Sequence 54 from Patent WO2006094836. 42 5.7 1
(CQ597293) Sequence 25051 from Patent WO0171042. 42 5.7 1
(AX344565) Sequence 16 from Patent WO0200932. 42 5.7 1
(D16466) Dictyostelium discoideum mitochondrial genes for la... 42 5.7 1
(AE013599) Drosophila melanogaster chromosome 2R, complete s... 42 5.7 1
(AC203060) Acyrthosiphon pisum BAC VMRC38-30-A10 (Benaroya ... 42 5.7 1
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 42 5.7 1
(AC115592) Dictyostelium discoideum chromosome 2 map 1-12595... 42 5.7 1
(AC007054) Drosophila melanogaster, chromosome 2R, region 41... 42 5.7 1
(AB126004) Periplaneta fuliginosa mitochondrial DNA, complet... 42 5.7 1
(AB000109) Dictyostelium discoideum mitochondrial DNA, compl... 42 5.7 1
(Z95329) Human DNA sequence from clone RP3-522O2 on chromoso... 42 5.7 1
(CR536611) Human DNA sequence from clone CITF22-88A8 on chro... 42 5.7 1
(AL627223) Human DNA sequence from clone RP11-184B22 on chro... 42 5.7 1
(AL135911) Human DNA sequence from clone RP3-439I14 on chrom... 42 5.7 1
(AL110122) Human DNA sequence from clone CTA-280A3 on chromo... 42 5.7 1
(AC103590) Homo sapiens chromosome 1 clone RP11-544K18, comp... 42 5.7 1
(AC098858) Homo sapiens BAC clone RP11-149A7 from 4, complet... 42 5.7 1
(AC097486) Homo sapiens BAC clone RP11-213L8 from 4, complet... 42 5.7 1
(AC069257) Homo sapiens 3 BAC RP11-447L10 (Roswell Park Canc... 42 5.7 1
(AC162343) Bos taurus clone CH240-115F15, WORKING DRAFT SEQU... 42 5.7 1
(AC156346) Saimiri boliviensis boliviensis clone CH254-12C14... 42 5.7 1
(AC127752) Rattus norvegicus clone CH230-22L22, WORKING DRAF... 42 5.7 1
(AC111609) Rattus norvegicus clone CH230-221D7, WORKING DRAF... 42 5.7 1
(AC098625) Rattus norvegicus clone CH230-120K9, *** SEQUENCI... 42 5.7 1
(FP236618) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 42 5.7 1
(FP103085) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 42 5.7 1
(CU929295) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 42 5.7 1
(CU856008) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 5.7 1
(CU855687) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 42 5.7 1
(CU633173) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 5.7 1
(CU570638) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 5.7 1
(AC084011) Homo sapiens chromosome UL clone RP11-76I22, WORK... 42 5.7 1
(AC026155) Homo sapiens chromosome 12 clone RP11-180F6, WORK... 42 5.7 1
(AC026071) Homo sapiens chromosome 1 clone RP11-252O1, WORKI... 42 5.7 1
(CU280744) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 42 5.7 1
(CT990473) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 42 5.7 1
(CT573427) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 42 5.7 1
(CT573278) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 42 5.7 1
(CR352248) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 42 5.7 1
(BX908730) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 42 5.7 1
(AL583823) Human DNA sequence *** SEQUENCING CANCELLED *** f... 42 5.7 1
(AC233316) Ornithorhynchus anatinus clone CH236-51M20, WORKI... 42 5.7 1
(AC222124) Bos taurus clone CH240-370K7, WORKING DRAFT SEQUE... 42 5.7 1
(AC219705) Bos taurus clone CH240-324N5, WORKING DRAFT SEQUE... 42 5.7 1
(AC218700) Bos taurus clone CH240-297C11, WORKING DRAFT SEQU... 42 5.7 1
(AC212990) Mus musculus chromosome Y clone RP24-67C19, WORKI... 42 5.7 1
(AC211650) Zea mays chromosome 8 clone ZMMBBb-504H14; ZMMBBb... 42 5.7 1
(AC211373) Mus musculus chromosome Y clone RP24-378P5, WORKI... 42 5.7 1
(AC202468) Medicago truncatula clone mth2-145h19, WORKING DR... 42 5.7 1
(AC197514) Pan troglodytes chromosome 7 clone CH251-566F6, W... 42 5.7 1
(AC180523) Strongylocentrotus purpuratus clone R3-3099D12, W... 42 5.7 1
(AC179634) Strongylocentrotus purpuratus clone R3-1025H7, WO... 42 5.7 1
(AC179520) Strongylocentrotus purpuratus clone R3-6C18, WORK... 42 5.7 1
(AC178861) Strongylocentrotus purpuratus clone R3-26J20, WOR... 42 5.7 1
(AC177396) Strongylocentrotus purpuratus clone R3-53H23, WOR... 42 5.7 1
(AC173601) Bos taurus clone CH240-280G24, WORKING DRAFT SEQU... 42 5.7 1
(AC170343) Bos taurus clone CH240-245L2, WORKING DRAFT SEQUE... 42 5.7 1
(AC168224) Bos taurus clone CH240-231K15, WORKING DRAFT SEQU... 42 5.7 1
(AC025348) Homo sapiens chromosome 6 clone RP11-139N14 map 6... 42 5.7 1
(AC017912) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 42 5.7 1
(AC012440) Homo sapiens clone RP11-11H11, WORKING DRAFT SEQU... 42 5.7 1
(AZ732438) RPCI-24-128G23.TJ RPCI-24 Mus musculus genomic cl... 42 5.7 1
(AZ669481) ENTLC09TR Entamoeba histolytica Sheared DNA Entam... 42 5.7 1
(AZ099050) RPCI-23-477K21.TJ RPCI-23 Mus musculus genomic cl... 42 5.7 1
(FI442713) CH322-17P17.x CHORI-322 Drosophila melanogaster g... 42 5.7 1
(FI425830) CH322-157F17.y CHORI-322 Drosophila melanogaster ... 42 5.7 1
(FH383259) CHO_OF4745xo01r1.ab1 CHO_OF4 Nicotiana tabacum ge... 42 5.7 1
(FH383175) CHO_OF4745xo01f1.ab1 CHO_OF4 Nicotiana tabacum ge... 42 5.7 1
(AL978171) Danio rerio genomic clone DKEY-48F16, genomic sur... 42 5.7 1
(AL744999) Danio rerio genomic clone DKEY-15I7, genomic surv... 42 5.7 1
(EJ551888) 1092959455921 Global-Ocean-Sampling_GS-29-01-01-1... 42 5.7 1
(EJ522140) 1092955148858 Global-Ocean-Sampling_GS-29-01-01-1... 42 5.7 1
(EI792538) CHORI518019O16TR BAC library from the breast cell... 42 5.7 1
(DX969189) CHORI105-17J8.TJ.1 CHORI105.pTARBAC1.3 Trypanosom... 42 5.7 1
(DX963578) CHORI105-13O23.TJ.1 CHORI105.pTARBAC1.3 Trypanoso... 42 5.7 1
(DX958725) CHORI105-6P12.TJ CHORI105.pTARBAC1.3 Trypanosoma ... 42 5.7 1
(DU949661) 214472 Tomato MboI BAC Library Solanum lycopersic... 42 5.7 1
(DU075347) 66126 Tomato HindIII BAC Library Solanum lycopers... 42 5.7 1
(DH171072) Oryzias latipes Fosmid clone:GOLWFno446_g10, forw... 42 5.7 1
(DE979929) Macropus eugenii DNA, BAC clone: MEB1-188E13_F, 5... 42 5.7 1
(DE615535) Bombyx mori genomic DNA, Fosmid clone:GBMFno353_a... 42 5.7 1
(CZ127162) OA_BBa0017B23.f OA_BBa Oryza alta genomic clone O... 42 5.7 1
(CW704686) AIAA-aab85f03.g1 Ancylostoma caninum whole genome... 42 5.7 1
(CW387966) fsbb001f072i13k0 Sorghum methylation filtered lib... 42 5.7 1
(CW031280) 104_259_10500717_116_30398 Sorghum methylation fi... 42 5.7 1
(AG671266) Macaca fuscata fuscata DNA, clone: MSB2-095H24_R,... 42 5.7 1
(CL037788) CH216-43N20_RM1.1 CH216 Xenopus (Silurana) tropic... 42 5.7 1
(CG248026) OG1BF67TV ZM_0.7_1.5_KB Zea mays genomic clone ZM... 42 5.7 1
(CG248015) OG1BF67TH ZM_0.7_1.5_KB Zea mays genomic clone ZM... 42 5.7 1
(CC723240) OGWBR06TH ZM_0.7_1.5_KB Zea mays genomic clone ZM... 42 5.7 1
(CC681483) OGVBE66TV ZM_0.7_1.5_KB Zea mays genomic clone ZM... 42 5.7 1
(CC681471) OGVBE66TH ZM_0.7_1.5_KB Zea mays genomic clone ZM... 42 5.7 1
(BZ396680) EINCQ81TF EI_10_12_KB Entamoeba invadens genomic ... 42 5.7 1
(BZ337114) ia85d02.g1 WGS-SbicolorF (JM107 adapted methyl fi... 42 5.7 1
(BZ164671) CH230-258D5.TJ CHORI-230 Segment 2 Rattus norvegi... 42 5.7 1
(AG278274) Mus musculus molossinus DNA, clone:MSMg01-048I12.... 42 5.7 1
(AG229727) Lotus japonicus DNA, clone:LjB18j02_r. 42 5.7 1
(DN664579) CFW20-H02.x1d-t SHGC-CFW Gasterosteus aculeatus c... 42 5.7 1
(CV836153) ID0ACC2CA10RM1 ID0ACC Acyrthosiphon pisum cDNA cl... 42 5.7 1
(CV831647) ID0ACC18DF07RM1 ID0ACC Acyrthosiphon pisum cDNA c... 42 5.7 1
(C84179) Dictyostelium discoideum slug cDNA, clone SSC442. 42 5.7 1
(BJ397487) Dictyostelium discoideum cDNA clone:dds46b14, 5' ... 42 5.7 1
(BJ396951) Dictyostelium discoideum cDNA clone:dds44e16, 5' ... 42 5.7 1
(BJ396046) Dictyostelium discoideum cDNA clone:dds41n03, 5' ... 42 5.7 1
(BJ396019) Dictyostelium discoideum cDNA clone:dds41f03, 5' ... 42 5.7 1
(BJ395700) Dictyostelium discoideum cDNA clone:dds39h19, 5' ... 42 5.7 1
(BJ395586) Dictyostelium discoideum cDNA clone:dds39m10, 5' ... 42 5.7 1
(BJ395406) Dictyostelium discoideum cDNA clone:dds38b24, 5' ... 42 5.7 1
(BJ395012) Dictyostelium discoideum cDNA clone:dds37h09, 5' ... 42 5.7 1
(BJ393144) Dictyostelium discoideum cDNA clone:dds30d09, 5' ... 42 5.7 1
(BJ392345) Dictyostelium discoideum cDNA clone:dds27f12, 5' ... 42 5.7 1
(BJ392091) Dictyostelium discoideum cDNA clone:dds26h12, 5' ... 42 5.7 1
(BJ390476) Dictyostelium discoideum cDNA clone:dds22f15, 5' ... 42 5.7 1
(BJ370300) Dictyostelium discoideum cDNA clone:ddc53k18, 5' ... 42 5.7 1
(BJ369178) Dictyostelium discoideum cDNA clone:ddc49j14, 5' ... 42 5.7 1
(BJ366394) Dictyostelium discoideum cDNA clone:ddc38g21, 5' ... 42 5.7 1
(BJ366116) Dictyostelium discoideum cDNA clone:ddc37e21, 5' ... 42 5.7 1
(BJ366038) Dictyostelium discoideum cDNA clone:ddc37d15, 5' ... 42 5.7 1
(BJ365702) Dictyostelium discoideum cDNA clone:ddc36f07, 5' ... 42 5.7 1
(BJ336481) Dictyostelium discoideum cDNA clone:dda54f06, 5' ... 42 5.7 1
(BJ334948) Dictyostelium discoideum cDNA clone:dda48j09, 5' ... 42 5.7 1
(BJ331510) Dictyostelium discoideum cDNA clone:dda35n16, 5' ... 42 5.7 1
(BJ331084) Dictyostelium discoideum cDNA clone:dda33h20, 5' ... 42 5.7 1
(BJ330461) Dictyostelium discoideum cDNA clone:dda31k18, 5' ... 42 5.7 1
(BJ328297) Dictyostelium discoideum cDNA clone:dda23m13, 5' ... 42 5.7 1
(FM124495) Rattus norvegicus EST, 5'-end sequence, clone etn... 42 5.7 1
(FK870986) EST_crog_evp_914895 crog_evp Caligus rogercressey... 42 5.7 1
(FK870985) EST_crog_evp_909519 crog_evp Caligus rogercressey... 42 5.7 1
(FK718274) pl_065-E8 Ilyanassa (snail) 0-48h Ilyanassa obsol... 42 5.7 1
(FG281536) gmnlskic_0011k16.pDNRm13r Gadus morhua spleen and... 42 5.7 1
(FG277153) gmnlla_0043l24.sp6 Gadus morhua larvae library Ga... 42 5.7 1
(FG275319) gmnlla_0012k06.sp6 Gadus morhua larvae library Ga... 42 5.7 1
(EY747864) CS00-C5-003-049-G05-CT.F Sweet orange flower, gre... 42 5.7 1
(EY378621) CAXA17358.fwd CAXA Helobdella robusta Subtracted ... 42 5.7 1
(EY355149) CAWZ3655.rev CAWZ Helobdella robusta Primary Late... 42 5.7 1
(EY339675) CAWY9828.fwd CAWY Helobdella robusta Subtracted E... 42 5.7 1
(EX185076) gmnbmu_0002c20.pDNRm13r Gadus morhua skeletal mus... 42 5.7 1
(AM180355) Clostridium difficile 630 complete genome. 42 5.7 1
(AC107399) Homo sapiens BAC clone RP11-755N14 from 4, comple... 38 5.9 2
(AC130881) Rattus norvegicus clone CH230-289D24, WORKING DRA... 36 6.4 2
(AC163760) Pan troglodytes BAC clone CH251-180O13 from chrom... 38 6.6 2
(AC230655) Bos taurus clone CH240-502I9, WORKING DRAFT SEQUE... 38 7.2 2
(AX344560) Sequence 11 from Patent WO0200932. 34 7.9 4
(FG327617) gmnlem_0013e14.sp6 Gadus morhua embryo library Ga... 32 8.4 2
(AC111239) Rattus norvegicus clone CH230-234O14, *** SEQUENC... 38 8.5 2
(AE014819) Plasmodium falciparum 3D7 chromosome 14 section 4... 32 10.0 2

>(AU073404) Dictyostelium discoideum slug cDNA, clone SSH115.
Length = 160

Score = 139 bits (70), Expect = 3e-29
Identities = 70/70 (100%)
Strand = Plus / Plus


Query: 1 atacatttatcatttcaactaataataaataataattataaccaattataagtcattgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atacatttatcatttcaactaataataaataataattataaccaattataagtcattgca 60


Query: 61 cgtggtttcc 70
||||||||||
Sbjct: 61 cgtggtttcc 70

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 109,466,622
Number of extensions: 8198849
Number of successful extensions: 2972834
Number of sequences better than 10.0: 325
Length of query: 159
Length of database: 101,790,757,118
Length adjustment: 22
Effective length of query: 137
Effective length of database: 99,544,435,898
Effective search space: 13637587718026
Effective search space used: 13637587718026
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)

protein update 2009. 7.18
Homology vs Protein
Query= Contig-U01764-1 (Contig-U01764-1Q) /CSM_Contig/Contig-U01764-1Q.Seq.d
(159 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 124,530,699
Number of extensions: 957685
Number of successful extensions: 883
Number of sequences better than 10.0: 0
Number of HSP's gapped: 883
Number of HSP's successfully gapped: 0
Length of query: 53
Length of database: 1,051,180,864
Length adjustment: 26
Effective length of query: 27
Effective length of database: 967,030,330
Effective search space: 26109818910
Effective search space used: 26109818910
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 25 (14.2 bits)

PSORT

psg: 0.87 gvh: 0.30 alm: 0.48 top: 0.60 tms: 0.00 mit: 0.42 mip: 0.00
nuc: 0.73 erl: 0.00 erm: 1.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

64.0 %: nuclear
20.0 %: cytoplasmic
16.0 %: mitochondrial

>> prediction for Contig-U01764-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0