Contig-U11362-1
Contig ID Contig-U11362-1
Contig update 2002.12.18
Contig sequence
>Contig-U11362-1 (Contig-U11362-1Q) /CSM_Contig/Contig-U11362-1Q.Seq.d
ATAATTCAGTTATGATAAAGATTGGTGAAGTTGAAGTACCAGAGGATATT
TATAATCAAAAAGTTGAAAAATGGAGAAATGATTTTAATAGTATTTTTAG
AAATCTTGAAACATTGGAGATTGATTATACAAAAGCAACATTTGGTTTAC
CAAAAGATACAACAGTTAGAAGTATTTTTTGGAGAATTGCATTAGGTACC
TTATCAAAAGATCCAACCACTTGGGTTGAAAGAACAAATTCAAGTAGAAA
GAAATATGAAACATTTAAAAAGAATTATATTATTAATCCAAGAAATTCAA
AAGATCAAGATGCAGATCTTCAACAACAACAGCAACAACAACAACAACAA
CAAAGAAAACCAGTATCATTAATTGATGACCCATTATCACAAAGTGAGGA
TAGTTTATGGAATCAATTTTTTGATAATGAAAATGCACAAAGAGAGATTA
GTCATGACATTTCAAGAACGTATCCAGGTTTAGGATTTTTCGAAAGATTA
GATATTCAAGATATAATGATTAGAATATTATTTATATTTAGTAAACAATA
TCCAAAGATTAAGTATCTTCAAGGTATGAATGAAATATTGGCACCAATTC
TATACTCTGTCTACAACGATTCACNNNNNNNNN----------CAACAAT
CAACTATTTCACAACAATCAACTACTCCACAACAATCAATCACTCAACAG
GACATCTTCTCCAAATATAGTATTAAAACAACAACAACCAATCACTGTTA
TTTCACAACAACAACAATCACAACAACAACAATCTCTACAACAAGAACAA
CAGCAATCTACCCAACAACAACAATCTACACAACAAGAACAGCAATCTAC
ACAACAAGAACAACAGCAATCTACACAACCACAACAATCACAACAAAATA
ACGATAATAGTCCATTCCAACAATATAATAACGATAATAGACAAGAAAAA
ATATCATTAGAAGATGAAGTCTTTTTTGATAATCAATTTGTATCAGTTCA
ATCAACAAATAAAGAATTTCAATTGAAAACATTATCACTTCCAAATGTAG
AGATTCATGAAGATGATTTGGTTGAAGTTAAAACTCATGATAGTACAGTC
GATGAAGATGAAGATGGTAATCCAATCACTGAACAATATAATTACAAGCA
ACAATTAGAAGCAAGATGGGGTTTTAATAAATAAAATAAAATAATANACA
TAAAATAAAAA

Gap gap included
Contig length 1201
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 3131084
End point 3132277
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 3
Link to clone list U11362
List of clone(s)

est1=AHG836F,1,624
est2=AHG836Z,625,1193
est3=VHA175Z,654,1192
Translated Amino Acid sequence
NSVMIKIGEVEVPEDIYNQKVEKWRNDFNSIFRNLETLEIDYTKATFGLPKDTTVRSIFW
RIALGTLSKDPTTWVERTNSSRKKYETFKKNYIINPRNSKDQDADLQQQQQQQQQQQRKP
VSLIDDPLSQSEDSLWNQFFDNENAQREISHDISRTYPGLGFFERLDIQDIMIRILFIFS
KQYPKIKYLQGMNEILAPILYSVYNDSXXX---

---NNQLFHNNQLLHNNQSLNRTSSPNIVLKQQQPITVISQQQQSQQQQSLQQEQQQSTQ
QQQSTQQEQQSTQQEQQQSTQPQQSQQNNDNSPFQQYNNDNRQEKISLEDEVFFDNQFVS
VQSTNKEFQLKTLSLPNVEIHEDDLVEVKTHDSTVDEDEDGNPITEQYNYKQQLEARWGF
NK*nkiixik*k


Translated Amino Acid sequence (All Frames)
Frame A:
iiql**rlvklkyqrifiikklkngemilivfleilkhwrliiqkqhlvyqkiqqlevff
gelh*vpyqkiqplglkeqiqvernmkhlkriilliqeiqkikmqifnnnsnnnnnnken
qyh*lmthyhkvrivyginflimkmhkerlvmtfqeriqv*dfskd*ifki**leyylyl
vnniqrlsifkv*mkywhqfytlsttihxxx---

---qqstisqqsttpqqsitqqdifskysikttttnhcyfttttittttisttrttaiyp
tttiyttrtaiyttrttaiyttttittk*r**sipti**r**trkniirr*slf**sici
ssink*risieniitskcrds*r*fg*s*ns**ysr*r*rw*snh*ti*lqatirskmgf
**ik*nnxhkik

Frame B:
*fsydkdw*s*strgyl*sks*kmek*f**yf*ks*nigd*lyksniwftkryns*kyfl
encirylikrsnhlg*knkfk*kei*ni*kelyy*skkfkrsrcrsstttattttttkkt
siin**piitk*g*fmesif***kctkrd*s*hfknvsrfrifrkirysrynd*niiyi*
*tiskd*vssrye*nigtnsilclqrftxx---

---NNQLFHNNQLLHNNQSLNRTSSPNIVLKQQQPITVISQQQQSQQQQSLQQEQQQSTQ
QQQSTQQEQQSTQQEQQQSTQPQQSQQNNDNSPFQQYNNDNRQEKISLEDEVFFDNQFVS
VQSTNKEFQLKTLSLPNVEIHEDDLVEVKTHDSTVDEDEDGNPITEQYNYKQQLEARWGF
NK*nkiixik*k

Frame C:
NSVMIKIGEVEVPEDIYNQKVEKWRNDFNSIFRNLETLEIDYTKATFGLPKDTTVRSIFW
RIALGTLSKDPTTWVERTNSSRKKYETFKKNYIINPRNSKDQDADLQQQQQQQQQQQRKP
VSLIDDPLSQSEDSLWNQFFDNENAQREISHDISRTYPGLGFFERLDIQDIMIRILFIFS
KQYPKIKYLQGMNEILAPILYSVYNDSXXX---

---tinyfttinysttinhstghllqi*y*nnnnqsllfhnnnnhnnnnlynknnsnlpn
nnnlhnknsnlhnknnsnlhnhnnhnkitiivhsnniitiidkkkyh*kmksfliinlyq
fnqqiknfn*khyhfqm*rfmkmiwlklklmivqsmkmkmviqslnniitsnn*kqdgvl
inkik*xt*nk

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U11362-1 (Contig-U11362-1Q)
/CSM_Contig/Contig-U11362-1Q.Seq.d
(1211 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U11362-1 (Contig-U11362-1Q) /CSM_Contig/Conti... 634 0.0
Contig-U10899-1 (Contig-U10899-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U10354-1 (Contig-U10354-1Q) /CSM_Contig/Conti... 38 0.022
Contig-U07288-1 (Contig-U07288-1Q) /CSM_Contig/Conti... 38 0.022
Contig-U13863-1 (Contig-U13863-1Q) /CSM_Contig/Conti... 36 0.086
Contig-U13845-1 (Contig-U13845-1Q) /CSM_Contig/Conti... 36 0.086
Contig-U13650-1 (Contig-U13650-1Q) /CSM_Contig/Conti... 36 0.086
Contig-U12635-1 (Contig-U12635-1Q) /CSM_Contig/Conti... 36 0.086
Contig-U12305-1 (Contig-U12305-1Q) /CSM_Contig/Conti... 36 0.086
Contig-U14523-1 (Contig-U14523-1Q) /CSM_Contig/Conti... 30 5.3

>Contig-U11362-1 (Contig-U11362-1Q) /CSM_Contig/Contig-U11362-1Q.Seq.d
Length = 1211

Score = 634 bits (320), Expect = 0.0
Identities = 320/320 (100%)
Strand = Plus / Plus


Query: 1 ataattcagttatgataaagattggtgaagttgaagtaccagaggatatttataatcaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ataattcagttatgataaagattggtgaagttgaagtaccagaggatatttataatcaaa 60


Query: 61 aagttgaaaaatggagaaatgattttaatagtatttttagaaatcttgaaacattggaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aagttgaaaaatggagaaatgattttaatagtatttttagaaatcttgaaacattggaga 120


Query: 121 ttgattatacaaaagcaacatttggtttaccaaaagatacaacagttagaagtatttttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttgattatacaaaagcaacatttggtttaccaaaagatacaacagttagaagtatttttt 180


Query: 181 ggagaattgcattaggtaccttatcaaaagatccaaccacttgggttgaaagaacaaatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggagaattgcattaggtaccttatcaaaagatccaaccacttgggttgaaagaacaaatt 240


Query: 241 caagtagaaagaaatatgaaacatttaaaaagaattatattattaatccaagaaattcaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 caagtagaaagaaatatgaaacatttaaaaagaattatattattaatccaagaaattcaa 300


Query: 301 aagatcaagatgcagatctt 320
||||||||||||||||||||
Sbjct: 301 aagatcaagatgcagatctt 320


Score = 551 bits (278), Expect = e-157
Identities = 278/278 (100%)
Strand = Plus / Plus


Query: 897 aataacgataatagtccattccaacaatataataacgataatagacaagaaaaaatatca 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 aataacgataatagtccattccaacaatataataacgataatagacaagaaaaaatatca 956


Query: 957 ttagaagatgaagtcttttttgataatcaatttgtatcagttcaatcaacaaataaagaa 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 957 ttagaagatgaagtcttttttgataatcaatttgtatcagttcaatcaacaaataaagaa 1016


Query: 1017 tttcaattgaaaacattatcacttccaaatgtagagattcatgaagatgatttggttgaa 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1017 tttcaattgaaaacattatcacttccaaatgtagagattcatgaagatgatttggttgaa 1076


Query: 1077 gttaaaactcatgatagtacagtcgatgaagatgaagatggtaatccaatcactgaacaa 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1077 gttaaaactcatgatagtacagtcgatgaagatgaagatggtaatccaatcactgaacaa 1136


Query: 1137 tataattacaagcaacaattagaagcaagatggggttt 1174
||||||||||||||||||||||||||||||||||||||
Sbjct: 1137 tataattacaagcaacaattagaagcaagatggggttt 1174


Score = 537 bits (271), Expect = e-153
Identities = 271/271 (100%)
Strand = Plus / Plus


Query: 354 agaaaaccagtatcattaattgatgacccattatcacaaagtgaggatagtttatggaat 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 agaaaaccagtatcattaattgatgacccattatcacaaagtgaggatagtttatggaat 413


Query: 414 caattttttgataatgaaaatgcacaaagagagattagtcatgacatttcaagaacgtat 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 caattttttgataatgaaaatgcacaaagagagattagtcatgacatttcaagaacgtat 473


Query: 474 ccaggtttaggatttttcgaaagattagatattcaagatataatgattagaatattattt 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ccaggtttaggatttttcgaaagattagatattcaagatataatgattagaatattattt 533


Query: 534 atatttagtaaacaatatccaaagattaagtatcttcaaggtatgaatgaaatattggca 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 atatttagtaaacaatatccaaagattaagtatcttcaaggtatgaatgaaatattggca 593


Query: 594 ccaattctatactctgtctacaacgattcac 624
|||||||||||||||||||||||||||||||
Sbjct: 594 ccaattctatactctgtctacaacgattcac 624


Score = 107 bits (54), Expect = 3e-23
Identities = 54/54 (100%)
Strand = Plus / Plus


Query: 700 ggacatcttctccaaatatagtattaaaacaacaacaaccaatcactgttattt 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 ggacatcttctccaaatatagtattaaaacaacaacaaccaatcactgttattt 753


>Contig-U10899-1 (Contig-U10899-1Q) /CSM_Contig/Contig-U10899-1Q.Seq.d
Length = 1468

Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus


Query: 1101 gatgaagatgaagatggtaat 1121
|||||||||||||||||||||
Sbjct: 508 gatgaagatgaagatggtaat 528


>Contig-U10354-1 (Contig-U10354-1Q) /CSM_Contig/Contig-U10354-1Q.Seq.d
Length = 1222

Score = 38.2 bits (19), Expect = 0.022
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 727 aacaacaacaaccaatcac 745
|||||||||||||||||||
Sbjct: 479 aacaacaacaaccaatcac 497


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 22,781
Number of Sequences: 6905
Number of extensions: 22781
Number of successful extensions: 2727
Number of sequences better than 10.0: 333
length of query: 1211
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1195
effective length of database: 5,564,391
effective search space: 6649447245
effective search space used: 6649447245
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.24
Homology vs DNA
Query= Contig-U11362-1 (Contig-U11362-1Q) /CSM_Contig/Contig-U11362-1Q.Seq.d
(1211 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ333874) Dictyostelium discoideum cDNA clone:dda44h10, 5' ... 634 0.0 2
(BJ436638) Dictyostelium discoideum cDNA clone:ddv31e19, 3' ... 551 e-160 2
(BJ351704) Dictyostelium discoideum cDNA clone:dda44h10, 3' ... 551 e-159 2
(AM628161) Entamoeba dispar GSS, clone dispar27c05.q1k. 36 0.023 4
(AM642575) Entamoeba dispar GSS, clone dispar95h05.p1k. 36 0.042 4
(AA550070) 1165m3 gmbPfHB3.1, G. Roman Reddy Plasmodium falc... 46 0.15 2
(EY177584) CBTI6061.g1_J04.ab1:P Triphysaria pusilla root ti... 50 0.20 1
(EY144804) CBTH9602.g1_C01.ab1:P Triphysaria pusilla root ti... 50 0.20 1
(EY144803) CBTH9602.b1_C01.ab1:P Triphysaria pusilla root ti... 50 0.20 1
(CT009653) Medicago truncatula chromosome 5 clone mth2-173o1... 48 0.78 1
(EI800424) MUGQ_CH252P246M03Sp6_CN495_004 CHORI-252 Vervet M... 48 0.78 1
(CV855948) gonad_EST03424 Embryonic gonad cDNA Library Gallu... 48 0.78 1
(AJ969073) Spiroplasma citri pSci5 plasmid. 40 0.79 4
(EK328815) 1095467015855 Global-Ocean-Sampling_GS-31-01-01-1... 44 0.84 2
(EK466181) 1095469423955 Global-Ocean-Sampling_GS-32-01-01-1... 44 0.88 2
(CP001056) Clostridium botulinum B str. Eklund 17B, complete... 36 1.3 2
(CP000246) Clostridium perfringens ATCC 13124, complete genome. 32 1.3 2
(AM624110) Entamoeba dispar GSS, clone dispar106e11.p1k. 36 1.6 3
(EJ080445) 1095460019226 Global-Ocean-Sampling_GS-26-01-01-1... 36 1.9 3
(CT998545) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 2.0 4
(BB979179) Plasmodium berghei strain ANKA cDNA clone:OK00924... 36 2.1 2
(CN475528) USDA-FP_124618 Diaprepes abbreviatus, Diaprepes r... 44 2.6 2
(CP000395) Borrelia afzelii PKo, complete genome. 38 2.8 15
(EJ363084) 1092963694809 Global-Ocean-Sampling_GS-28-01-01-1... 44 3.0 2
(AE014820) Plasmodium falciparum 3D7 chromosome 14 section 5... 46 3.1 1
(AC095229) Rattus norvegicus clone CH230-9D21, *** SEQUENCIN... 46 3.1 1
(CU463145) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 3.1 1
(AC221936) Bos taurus clone CH240-377M2, WORKING DRAFT SEQUE... 46 3.1 1
(AC174086) Strongylocentrotus purpuratus clone R3-56D18, WOR... 46 3.1 1
(ER573431) 1093015801811 Global-Ocean-Sampling_GS-36-01-01-2... 46 3.1 1
(EJ047810) 1095454129513 Global-Ocean-Sampling_GS-26-01-01-1... 46 3.1 1
(DX453372) MAMA666TR MA4 Musa acuminata genomic clone MA4-2L... 46 3.1 1
(DY263731) IC0AAA12CD03RM1 CitNFL Citrus clementina cDNA 5',... 46 3.1 1
(DT485215) WS02527.B21_J16 PT-MB-N-A-15 Populus trichocarpa ... 46 3.1 1
(DT479995) WS02527.BR_J16 PT-MB-N-A-15 Populus trichocarpa c... 46 3.1 1
(CV131764) L3P06d07 Populus stem seasonal library Populus de... 46 3.1 1
(FC253192) CAGH7853.fwd CAGH Nematostella vectensis Nemve La... 46 3.1 1
(FC240595) CAGH13405.fwd CAGH Nematostella vectensis Nemve L... 46 3.1 1
(FC240594) CAGH13405.rev CAGH Nematostella vectensis Nemve L... 46 3.1 1
(FC238124) CAGH12115.fwd CAGH Nematostella vectensis Nemve L... 46 3.1 1
(FC206235) CAGC713.fwd CAGC Nematostella vectensis Nemve Ear... 46 3.1 1
(FC204951) CAAF533.fwd CAAF Nematostella vectensis nemve_P2 ... 46 3.1 1
(EY685722) CS00-C2-003-025-D04-CT.F Sweet orange bark, green... 46 3.1 1
(EY684668) CS00-C2-003-002-A03-CT.F Sweet orange bark, green... 46 3.1 1
(EY475007) METAB60TF JCVI-MT3 Medicago truncatula cDNA 5', m... 46 3.1 1
(CU367848) Zebrafish DNA sequence from clone CH73-20H24 in l... 36 3.2 6
(AE014831) Plasmodium falciparum 3D7 chromosome 10 section 3... 38 3.5 12
(ER469902) 1092963947410 Global-Ocean-Sampling_GS-35-01-01-1... 38 3.5 2
(AL450026) Human DNA sequence from clone RP11-439A18 on chro... 40 4.1 2
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet... 34 4.6 2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 36 4.7 13
(DQ274179) Solanum tuberosum patatin-rich BAC 14K07, complet... 40 4.8 4
(FF122507) CJAH-aab56b05.b1 Caenorhabditis_japonica_CJAH1_ES... 32 5.3 3
(AC103609) Mus musculus chromosome 3, clone RP23-359D10, com... 34 5.8 2
(DU016439) 238908 Tomato MboI BAC Library Solanum lycopersic... 32 7.6 2
(DX511306) 643_4_14167352_5489_43565_091 Arachis duranensis ... 32 7.6 3
(ED705605) GM_WBb0050F22.f GM_WBb Glycine max genomic clone ... 36 7.8 2
(DW016834) EST1225795 MTY Medicago truncatula cDNA clone MTY... 32 7.8 2
(CZ171705) MIAA-14K20b.b1 Meloidogyne incognita BAC end sequ... 34 7.8 2
(BP130944) Nicotiana tabacum cDNA, clone: BY2958, primer: M1... 40 7.9 2
(FH095810) CHO_OF3021xh15f1.ab1 CHO_OF3 Nicotiana tabacum ge... 40 8.4 2
(AC123513) Dictyostelium discoideum strain AX4 chromosome 2 ... 34 8.6 7
(CU222538) S.lycopersicum DNA sequence from clone LE_HBa-331... 40 9.3 7
(AM436525) Vitis vinifera contig VV78X179149.4, whole genome... 34 9.5 3
(AZ607074) 1M0429O18F Mouse 10kb plasmid UUGC1M library Mus ... 28 9.7 4

>(BJ333874) Dictyostelium discoideum cDNA clone:dda44h10, 5' end,
single read.
Length = 624

Score = 634 bits (320), Expect(2) = 0.0
Identities = 320/320 (100%)
Strand = Plus / Plus


Query: 1 ataattcagttatgataaagattggtgaagttgaagtaccagaggatatttataatcaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ataattcagttatgataaagattggtgaagttgaagtaccagaggatatttataatcaaa 60


Query: 61 aagttgaaaaatggagaaatgattttaatagtatttttagaaatcttgaaacattggaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aagttgaaaaatggagaaatgattttaatagtatttttagaaatcttgaaacattggaga 120


Query: 121 ttgattatacaaaagcaacatttggtttaccaaaagatacaacagttagaagtatttttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttgattatacaaaagcaacatttggtttaccaaaagatacaacagttagaagtatttttt 180


Query: 181 ggagaattgcattaggtaccttatcaaaagatccaaccacttgggttgaaagaacaaatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggagaattgcattaggtaccttatcaaaagatccaaccacttgggttgaaagaacaaatt 240


Query: 241 caagtagaaagaaatatgaaacatttaaaaagaattatattattaatccaagaaattcaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 caagtagaaagaaatatgaaacatttaaaaagaattatattattaatccaagaaattcaa 300


Query: 301 aagatcaagatgcagatctt 320
||||||||||||||||||||
Sbjct: 301 aagatcaagatgcagatctt 320

Score = 537 bits (271), Expect(2) = 0.0
Identities = 271/271 (100%)
Strand = Plus / Plus


Query: 354 agaaaaccagtatcattaattgatgacccattatcacaaagtgaggatagtttatggaat 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 agaaaaccagtatcattaattgatgacccattatcacaaagtgaggatagtttatggaat 413


Query: 414 caattttttgataatgaaaatgcacaaagagagattagtcatgacatttcaagaacgtat 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 caattttttgataatgaaaatgcacaaagagagattagtcatgacatttcaagaacgtat 473


Query: 474 ccaggtttaggatttttcgaaagattagatattcaagatataatgattagaatattattt 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ccaggtttaggatttttcgaaagattagatattcaagatataatgattagaatattattt 533


Query: 534 atatttagtaaacaatatccaaagattaagtatcttcaaggtatgaatgaaatattggca 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 atatttagtaaacaatatccaaagattaagtatcttcaaggtatgaatgaaatattggca 593


Query: 594 ccaattctatactctgtctacaacgattcac 624
|||||||||||||||||||||||||||||||
Sbjct: 594 ccaattctatactctgtctacaacgattcac 624

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,212,907,855
Number of extensions: 76869559
Number of successful extensions: 6550613
Number of sequences better than 10.0: 66
Length of query: 1211
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1187
Effective length of database: 97,308,875,965
Effective search space: 115505635770455
Effective search space used: 115505635770455
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.29
Homology vs Protein
Query= Contig-U11362-1 (Contig-U11362-1Q) /CSM_Contig/Contig-U11362-1Q.Seq.d
(1211 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

BC056792_1(BC056792|pid:none) Danio rerio TBC1 domain family, me... 110 1e-22
BX927400_3(BX927400|pid:none) Zebrafish DNA sequence from clone ... 110 1e-22
AK220251_1(AK220251|pid:none) Mus musculus mRNA for mKIAA0210 pr... 107 6e-22
AK033710_1(AK033710|pid:none) Mus musculus adult male cecum cDNA... 107 6e-22
AK154975_1(AK154975|pid:none) Mus musculus NOD-derived CD11c +ve... 107 6e-22
(Q80XQ2) RecName: Full=TBC1 domain family member 5; &BC043113_1... 107 6e-22
AK144467_1(AK144467|pid:none) Mus musculus 0 day neonate cortex ... 107 6e-22
AK005461_1(AK005461|pid:none) Mus musculus adult female placenta... 107 6e-22
BC072280_1(BC072280|pid:none) Xenopus laevis hypothetical protei... 106 1e-21
AL035528_12(AL035528|pid:none) Arabidopsis thaliana DNA chromoso... 106 1e-21
AB168705_1(AB168705|pid:none) Macaca fascicularis testis cDNA cl... 105 2e-21
D86965_1(D86965|pid:none) Homo sapiens mRNA for KIAA0210 gene, p... 105 2e-21
(Q92609) RecName: Full=TBC1 domain family member 5; &AB383800_1... 105 2e-21
AC146683_4(AC146683|pid:none) Medicago truncatula clone mth2-179... 104 7e-21
AC130798_4(AC130798|pid:none) Medicago truncatula clone mth2-27f... 100 1e-19
AL731623_9(AL731623|pid:none) Oryza sativa genomic DNA, chromoso... 96 3e-18
AK066945_1(AK066945|pid:none) Oryza sativa Japonica Group cDNA c... 95 4e-18
AB019233_2(AB019233|pid:none) Arabidopsis thaliana genomic DNA, ... 93 2e-17
EF148761_1(EF148761|pid:none) Populus trichocarpa x Populus delt... 92 5e-17
AK072293_1(AK072293|pid:none) Oryza sativa Japonica Group cDNA c... 92 5e-17
AP008217_903(AP008217|pid:none) Oryza sativa (japonica cultivar-... 91 6e-17
AC151665_15(AC151665|pid:none) Medicago truncatula clone mth2-7k... 90 2e-16
AP008210_598(AP008210|pid:none) Oryza sativa (japonica cultivar-... 88 5e-16
FN357341_71(FN357341|pid:none) Schistosoma mansoni genome sequen... 87 1e-15
AC004809_18(AC004809|pid:none) Arabidopsis thaliana chromosome 1... 87 2e-15
BT054291_1(BT054291|pid:none) Zea mays full-length cDNA clone ZM... 85 4e-15
AK066731_1(AK066731|pid:none) Oryza sativa Japonica Group cDNA c... 85 6e-15
AC003058_4(AC003058|pid:none) Arabidopsis thaliana chromosome 2 ... 76 2e-12
AE014187_697(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 69 3e-10
AP007159_552(AP007159|pid:none) Aspergillus oryzae RIB40 genomic... 69 3e-10
AM910994_321(AM910994|pid:none) Plasmodium knowlesi strain H chr... 67 1e-09
BC155093_1(BC155093|pid:none) Danio rerio zgc:171891, mRNA (cDNA... 65 4e-09
AE017351_212(AE017351|pid:none) Cryptococcus neoformans var. neo... 65 6e-09
CP001323_47(CP001323|pid:none) Micromonas sp. RCC299 chromosome ... 60 2e-07
(Q9NVG8) RecName: Full=TBC1 domain family member 13; &AL441992_... 57 1e-06
AK001605_1(AK001605|pid:none) Homo sapiens cDNA FLJ10743 fis, cl... 57 1e-06
BC136509_1(BC136509|pid:none) Homo sapiens TBC1 domain family, m... 57 1e-06
AY058542_1(AY058542|pid:none) Drosophila melanogaster LD24460 fu... 56 2e-06
AE014296_1575(AE014296|pid:none) Drosophila melanogaster chromos... 56 2e-06
CU633900_297(CU633900|pid:none) Podospora anserina genomic DNA c... 56 3e-06
BC143010_1(BC143010|pid:none) Synthetic construct Homo sapiens c... 54 1e-05
AL844509_202(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 54 1e-05
FN392319_221(FN392319|pid:none) Pichia pastoris GS115 chromosome... 51 7e-05
AY577002_1(AY577002|pid:none) Danio rerio clone RZ150A4A11 C22or... 50 2e-04
BC125999_1(BC125999|pid:none) Xenopus laevis hypothetical protei... 49 3e-04
CR382137_141(CR382137|pid:none) Debaryomyces hansenii strain CBS... 49 3e-04
(Q9NU19) RecName: Full=TBC1 domain family member 22B; &AB449909... 48 6e-04
BC142187_1(BC142187|pid:none) Bos taurus TBC1 domain family, mem... 48 6e-04
AC002340_10(AC002340|pid:none) Arabidopsis thaliana chromosome 2... 48 8e-04
G84711(G84711)hypothetical protein At2g30710 [imported] - Arabid... 48 8e-04
AK066076_1(AK066076|pid:none) Oryza sativa Japonica Group cDNA c... 47 0.001
Z81074_9(Z81074|pid:none) Caenorhabditis elegans Cosmid F32B6, c... 47 0.002
T21643(T21643) hypothetical protein F32B6.8 - Caenorhabditis ele... 47 0.002
AM910994_53(AM910994|pid:none) Plasmodium knowlesi strain H chro... 47 0.002
Z68117_4(Z68117|pid:none) Caenorhabditis elegans Cosmid F45E6, c... 45 0.004
EU975359_1(EU975359|pid:none) Zea mays clone 488613 TBC1 domain ... 44 0.009
AL109820_17(AL109820|pid:none) S.pombe chromosome I cosmid c1952... 44 0.009
CR380958_448(CR380958|pid:none) Candida glabrata strain CBS138 c... 44 0.009
CP000581_173(CP000581|pid:none) Ostreococcus lucimarinus CCE9901... 44 0.009
AL133498_1(AL133498|pid:none) S.pombe chromosome I cosmid c890. ... 44 0.015
AC115584_16(AC115584|pid:none) Dictyostelium discoideum chromoso... 43 0.020
CR954201_164(CR954201|pid:none) Ostreococcus tauri strain OTTH05... 43 0.020
AE014297_3040(AE014297|pid:none) Drosophila melanogaster chromos... 43 0.020
AP007154_647(AP007154|pid:none) Aspergillus oryzae RIB40 genomic... 43 0.026
AK123828_1(AK123828|pid:none) Homo sapiens cDNA FLJ41834 fis, cl... 42 0.033
AK295183_1(AK295183|pid:none) Homo sapiens cDNA FLJ54808 complet... 42 0.033
(Q08484) RecName: Full=GTPase-activating protein GYP1; AltName: ... 42 0.044
FN357446_26(FN357446|pid:none) Schistosoma mansoni genome sequen... 41 0.074
BT062977_1(BT062977|pid:none) Zea mays full-length cDNA clone ZM... 40 0.13
AM502248_172(AM502248|pid:none) Leishmania infantum chromosome 30. 40 0.17
AM920437_803(AM920437|pid:none) Penicillium chrysogenum Wisconsi... 40 0.17
CU928173_486(CU928173|pid:none) Zygosaccharomyces rouxii strain ... 40 0.22
AM494967_147(AM494967|pid:none) Leishmania braziliensis chromoso... 40 0.22
(O59737) RecName: Full=GTPase-activating protein gyp1; AltName: ... 40 0.22
CP000500_486(CP000500|pid:none) Pichia stipitis CBS 6054 chromos... 40 0.22
(Q09445) RecName: Full=Uncharacterized protein C04A2.1; &U23448... 39 0.28
BX538352_105(BX538352|pid:none) Cryptosporidium parvum chromosom... 39 0.37
CR855616_1(CR855616|pid:none) Xenopus tropicalis finished cDNA, ... 39 0.48
(Q8TBP0) RecName: Full=TBC1 domain family member 16; &AB449902_... 39 0.48
CU928170_739(CU928170|pid:none) Kluyveromyces thermotolerans str... 39 0.48
AL844504_66(AL844504|pid:none) Plasmodium falciparum 3D7 chromos... 38 0.63
AC009259_7(AC009259|pid:none) Trypanosoma brucei chromosome 6 cl... 38 0.82
AL451022_12(AL451022|pid:none) Neurospora crassa DNA linkage gro... 38 0.82
CU640366_1332(CU640366|pid:none) Podospora anserina genomic DNA ... 38 0.82
AY813919_1(AY813919|pid:none) Schistosoma japonicum clone SJCHGC... 37 1.1
AJ720021_1(AJ720021|pid:none) Gallus gallus mRNA for hypothetica... 37 1.1
CR954207_111(CR954207|pid:none) Ostreococcus tauri strain OTTH05... 37 1.4
AB064521_1(AB064521|pid:none) Mus musculus mRNA for KIAA1322, co... 37 1.4
CP000497_296(CP000497|pid:none) Pichia stipitis CBS 6054 chromos... 37 1.8
BC071978_1(BC071978|pid:none) Homo sapiens TBC1 domain family, m... 37 1.8
AC013483_23(AC013483|pid:none) Arabidopsis thaliana chromosome I... 37 1.8
CR382121_338(CR382121|pid:none) Kluyveromyces lactis strain NRRL... 37 1.8
AK228869_1(AK228869|pid:none) Arabidopsis thaliana mRNA for puta... 37 1.8
AK124772_1(AK124772|pid:none) Homo sapiens cDNA FLJ42782 fis, cl... 37 1.8
AF318370_1(AF318370|pid:none) Homo sapiens pp8997 mRNA, complete... 37 1.8
AM502248_321(AM502248|pid:none) Leishmania infantum chromosome 30. 37 1.8
AK068743_1(AK068743|pid:none) Oryza sativa Japonica Group cDNA c... 37 1.8
AB449882_1(AB449882|pid:none) Homo sapiens TBC1D2A mRNA for TBC1... 37 1.8
(P26448) RecName: Full=Mitotic check point protein BUB2; AltName... 37 1.8
BT064954_1(BT064954|pid:none) Zea mays full-length cDNA clone ZM... 37 1.8
AY026527_1(AY026527|pid:none) Homo sapiens prostate antigen PARI... 37 1.8
AK298575_1(AK298575|pid:none) Homo sapiens cDNA FLJ56222 complet... 37 1.8
AL844508_72(AL844508|pid:none) Plasmodium falciparum 3D7 chromos... 36 2.4
EF635009_1(EF635009|pid:none) Xenopus laevis spermatogenesis-rel... 36 2.4
BX284749_3(BX284749|pid:none) Neurospora crassa DNA linkage grou... 36 2.4
AK172979_1(AK172979|pid:none) Mus musculus mRNA for mKIAA0608 pr... 36 3.1
AL049956_1(AL049956|pid:none) Homo sapiens mRNA; cDNA DKFZp564J2... 36 3.1
BC168982_1(BC168982|pid:none) Rattus norvegicus TBC1 domain fami... 36 3.1
AK013092_1(AK013092|pid:none) Mus musculus 10, 11 days embryo wh... 36 3.1
BC041214_1(BC041214|pid:none) Xenopus laevis hypothetical protei... 36 3.1
AL683884_10(AL683884|pid:none) Mouse DNA sequence from clone RP2... 36 3.1
BC160725_1(BC160725|pid:none) Xenopus laevis hypothetical protei... 35 4.1
FM992690_512(FM992690|pid:none) Candida dubliniensis CD36 chromo... 35 4.1
AE014188_398(AE014188|pid:none) Plasmodium falciparum 3D7 chromo... 35 4.1
FM992695_919(FM992695|pid:none) Candida dubliniensis CD36 chromo... 35 4.1
CP001333_70(CP001333|pid:none) Micromonas sp. RCC299 chromosome ... 35 5.3
AE013599_16(AE013599|pid:none) Drosophila melanogaster chromosom... 35 5.3
AE013599_17(AE013599|pid:none) Drosophila melanogaster chromosom... 35 5.3
CU633897_134(CU633897|pid:none) Podospora anserina genomic DNA c... 35 5.3
CR382137_67(CR382137|pid:none) Debaryomyces hansenii strain CBS7... 35 5.3
T19836(T19836)hypothetical protein C38H2.1 - Caenorhabditis eleg... 35 5.3
AB173992_1(AB173992|pid:none) Macaca fascicularis brain cDNA clo... 35 6.9
AB384176_1(AB384176|pid:none) Synthetic construct DNA, clone: pF... 35 6.9
BC001292_1(BC001292|pid:none) Homo sapiens TBC1 domain family, m... 35 6.9
CR860928_1(CR860928|pid:none) Pongo abelii mRNA; cDNA DKFZp469F1... 35 6.9
AK154226_1(AK154226|pid:none) Mus musculus NOD-derived CD11c +ve... 35 6.9
BC096446_1(BC096446|pid:none) Mus musculus TBC1 domain family, m... 35 6.9
AL833868_1(AL833868|pid:none) Homo sapiens mRNA; cDNA DKFZp434K1... 35 6.9
CP000560_192(CP000560|pid:none) Bacillus amyloliquefaciens FZB42... 35 6.9
BC099760_1(BC099760|pid:none) Rattus norvegicus TBC1 domain fami... 35 6.9
(Q8CGA2) RecName: Full=TBC1 domain family member 14; 35 6.9
BC011420_1(BC011420|pid:none) Mus musculus TBC1 domain family, m... 35 6.9
BC042515_1(BC042515|pid:none) Mus musculus TBC1 domain family, m... 35 6.9
(Q9P2M4) RecName: Full=TBC1 domain family member 14; 35 6.9
AL023733_2(AL023733|pid:none) Human DNA sequence from clone SC22... 35 6.9
AB108668_1(AB108668|pid:none) Rattus norvegicus UR-NR#2 mRNA for... 35 6.9
AK055591_1(AK055591|pid:none) Homo sapiens cDNA FLJ31029 fis, cl... 35 6.9
AC084047_21(AC084047|pid:none) Trypanosoma brucei chromosome 6 c... 35 6.9
AK301445_1(AK301445|pid:none) Homo sapiens cDNA FLJ57214 complet... 35 6.9
AK127653_1(AK127653|pid:none) Homo sapiens cDNA FLJ45751 fis, cl... 35 6.9
(Q8R5A6) RecName: Full=TBC1 domain family member 22A; &AK039627... 35 6.9
AB117752_1(AB117752|pid:none) Rattus norvegicus SRF-2 mRNA for h... 35 6.9
AK125705_1(AK125705|pid:none) Homo sapiens cDNA FLJ43717 fis, cl... 35 6.9
BC023106_1(BC023106|pid:none) Mus musculus TBC1 domain family, m... 35 6.9
(Q95KI1) RecName: Full=TBC1 domain family member 22A; Flags: Fra... 35 6.9
AB060857_1(AB060857|pid:none) Macaca fascicularis brain cDNA clo... 35 6.9
AB093293_1(AB093293|pid:none) Mus musculus mRNA for mKIAA1322 pr... 35 6.9
T31583(T31583)hypothetical protein Y48C3A.a - Caenorhabditis ele... 34 9.1
AM270172_24(AM270172|pid:none) Aspergillus niger contig An08c017... 34 9.1
Z80344_8(Z80344|pid:none) Caenorhabditis elegans Cosmid F15D4, c... 34 9.1
CP000241_872(CP000241|pid:none) Helicobacter pylori HPAG1, compl... 34 9.1
FN392319_257(FN392319|pid:none) Pichia pastoris GS115 chromosome... 34 9.1

>BC056792_1(BC056792|pid:none) Danio rerio TBC1 domain family,
member 5, mRNA (cDNA clone MGC:63624 IMAGE:5603353),
complete cds.
Length = 533

Score = 110 bits (275), Expect = 1e-22
Identities = 57/186 (30%), Positives = 103/186 (55%)
Frame = +3

Query: 63 VEKWRNDFNSIFRNLETLEIDYTKATFGLPKDTTVRSIFWRIALGTLSKDPTTWVERTNS 242
++ +R +++ +F+N L G + + RS+ W++ L L +D W+ RT
Sbjct: 44 LQSYRKEWDDLFQNSNYLPRIRQAGINGRLRSSRFRSVCWKLYLDVLPEDKAQWISRTKE 103

Query: 243 SRKKYETFKKNYIINPRNSKDQDADLXXXXXXXXXXXRKPVSLIDDPLSQSEDSLWNQFF 422
R +YE K+ +I NPR + Q DL ++++PLSQ E SLWN+FF
Sbjct: 104 HRAQYEKIKEMHITNPRKAAGQQ-DL----------------VVNNPLSQDEGSLWNKFF 146

Query: 423 DNENAQREISHDISRTYPGLGFFERLDIQDIMIRILFIFSKQYPKIKYLQGMNEILAPIL 602
++ + I D+ RT+P + +F+ D++ M ILF ++++ ++ Y QGM+E+LAPI+
Sbjct: 147 QDKELRGMIKQDVLRTFPEMLYFQEEDVRTKMTDILFCYARENEQLLYKQGMHELLAPIV 206

Query: 603 YSVYND 620
+ ++ D
Sbjct: 207 FVLHCD 212

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,413,387,003
Number of extensions: 24963373
Number of successful extensions: 67680
Number of sequences better than 10.0: 152
Number of HSP's gapped: 67452
Number of HSP's successfully gapped: 167
Length of query: 403
Length of database: 1,040,966,779
Length adjustment: 131
Effective length of query: 272
Effective length of database: 621,205,444
Effective search space: 168967880768
Effective search space used: 168967880768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.75 gvh: 0.39 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.20 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
32.0 %: nuclear
8.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for Contig-U11362-1 is cyt

VS (DIR, S) 0
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 1
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0