Contig-U11362-1 |
Contig ID |
Contig-U11362-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
gap included |
Contig length |
1201 |
Chromosome number (1..6, M) |
3 |
Chromosome length |
6358359 |
Start point |
3131084 |
End point |
3132277 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
2 |
Number of EST |
3 |
Link to clone list |
U11362 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.24 |
Homology vs DNA |
Query= Contig-U11362-1 (Contig-U11362-1Q) /CSM_Contig/Contig-U11362-1Q.Seq.d (1211 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ333874) Dictyostelium discoideum cDNA clone:dda44h10, 5' ... 634 0.0 2 (BJ436638) Dictyostelium discoideum cDNA clone:ddv31e19, 3' ... 551 e-160 2 (BJ351704) Dictyostelium discoideum cDNA clone:dda44h10, 3' ... 551 e-159 2 (AM628161) Entamoeba dispar GSS, clone dispar27c05.q1k. 36 0.023 4 (AM642575) Entamoeba dispar GSS, clone dispar95h05.p1k. 36 0.042 4 (AA550070) 1165m3 gmbPfHB3.1, G. Roman Reddy Plasmodium falc... 46 0.15 2 (EY177584) CBTI6061.g1_J04.ab1:P Triphysaria pusilla root ti... 50 0.20 1 (EY144804) CBTH9602.g1_C01.ab1:P Triphysaria pusilla root ti... 50 0.20 1 (EY144803) CBTH9602.b1_C01.ab1:P Triphysaria pusilla root ti... 50 0.20 1 (CT009653) Medicago truncatula chromosome 5 clone mth2-173o1... 48 0.78 1 (EI800424) MUGQ_CH252P246M03Sp6_CN495_004 CHORI-252 Vervet M... 48 0.78 1 (CV855948) gonad_EST03424 Embryonic gonad cDNA Library Gallu... 48 0.78 1 (AJ969073) Spiroplasma citri pSci5 plasmid. 40 0.79 4 (EK328815) 1095467015855 Global-Ocean-Sampling_GS-31-01-01-1... 44 0.84 2 (EK466181) 1095469423955 Global-Ocean-Sampling_GS-32-01-01-1... 44 0.88 2 (CP001056) Clostridium botulinum B str. Eklund 17B, complete... 36 1.3 2 (CP000246) Clostridium perfringens ATCC 13124, complete genome. 32 1.3 2 (AM624110) Entamoeba dispar GSS, clone dispar106e11.p1k. 36 1.6 3 (EJ080445) 1095460019226 Global-Ocean-Sampling_GS-26-01-01-1... 36 1.9 3 (CT998545) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 2.0 4 (BB979179) Plasmodium berghei strain ANKA cDNA clone:OK00924... 36 2.1 2 (CN475528) USDA-FP_124618 Diaprepes abbreviatus, Diaprepes r... 44 2.6 2 (CP000395) Borrelia afzelii PKo, complete genome. 38 2.8 15 (EJ363084) 1092963694809 Global-Ocean-Sampling_GS-28-01-01-1... 44 3.0 2 (AE014820) Plasmodium falciparum 3D7 chromosome 14 section 5... 46 3.1 1 (AC095229) Rattus norvegicus clone CH230-9D21, *** SEQUENCIN... 46 3.1 1 (CU463145) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 3.1 1 (AC221936) Bos taurus clone CH240-377M2, WORKING DRAFT SEQUE... 46 3.1 1 (AC174086) Strongylocentrotus purpuratus clone R3-56D18, WOR... 46 3.1 1 (ER573431) 1093015801811 Global-Ocean-Sampling_GS-36-01-01-2... 46 3.1 1 (EJ047810) 1095454129513 Global-Ocean-Sampling_GS-26-01-01-1... 46 3.1 1 (DX453372) MAMA666TR MA4 Musa acuminata genomic clone MA4-2L... 46 3.1 1 (DY263731) IC0AAA12CD03RM1 CitNFL Citrus clementina cDNA 5',... 46 3.1 1 (DT485215) WS02527.B21_J16 PT-MB-N-A-15 Populus trichocarpa ... 46 3.1 1 (DT479995) WS02527.BR_J16 PT-MB-N-A-15 Populus trichocarpa c... 46 3.1 1 (CV131764) L3P06d07 Populus stem seasonal library Populus de... 46 3.1 1 (FC253192) CAGH7853.fwd CAGH Nematostella vectensis Nemve La... 46 3.1 1 (FC240595) CAGH13405.fwd CAGH Nematostella vectensis Nemve L... 46 3.1 1 (FC240594) CAGH13405.rev CAGH Nematostella vectensis Nemve L... 46 3.1 1 (FC238124) CAGH12115.fwd CAGH Nematostella vectensis Nemve L... 46 3.1 1 (FC206235) CAGC713.fwd CAGC Nematostella vectensis Nemve Ear... 46 3.1 1 (FC204951) CAAF533.fwd CAAF Nematostella vectensis nemve_P2 ... 46 3.1 1 (EY685722) CS00-C2-003-025-D04-CT.F Sweet orange bark, green... 46 3.1 1 (EY684668) CS00-C2-003-002-A03-CT.F Sweet orange bark, green... 46 3.1 1 (EY475007) METAB60TF JCVI-MT3 Medicago truncatula cDNA 5', m... 46 3.1 1 (CU367848) Zebrafish DNA sequence from clone CH73-20H24 in l... 36 3.2 6 (AE014831) Plasmodium falciparum 3D7 chromosome 10 section 3... 38 3.5 12 (ER469902) 1092963947410 Global-Ocean-Sampling_GS-35-01-01-1... 38 3.5 2 (AL450026) Human DNA sequence from clone RP11-439A18 on chro... 40 4.1 2 (CP001078) Clostridium botulinum E3 str. Alaska E43, complet... 34 4.6 2 (AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 36 4.7 13 (DQ274179) Solanum tuberosum patatin-rich BAC 14K07, complet... 40 4.8 4 (FF122507) CJAH-aab56b05.b1 Caenorhabditis_japonica_CJAH1_ES... 32 5.3 3 (AC103609) Mus musculus chromosome 3, clone RP23-359D10, com... 34 5.8 2 (DU016439) 238908 Tomato MboI BAC Library Solanum lycopersic... 32 7.6 2 (DX511306) 643_4_14167352_5489_43565_091 Arachis duranensis ... 32 7.6 3 (ED705605) GM_WBb0050F22.f GM_WBb Glycine max genomic clone ... 36 7.8 2 (DW016834) EST1225795 MTY Medicago truncatula cDNA clone MTY... 32 7.8 2 (CZ171705) MIAA-14K20b.b1 Meloidogyne incognita BAC end sequ... 34 7.8 2 (BP130944) Nicotiana tabacum cDNA, clone: BY2958, primer: M1... 40 7.9 2 (FH095810) CHO_OF3021xh15f1.ab1 CHO_OF3 Nicotiana tabacum ge... 40 8.4 2 (AC123513) Dictyostelium discoideum strain AX4 chromosome 2 ... 34 8.6 7 (CU222538) S.lycopersicum DNA sequence from clone LE_HBa-331... 40 9.3 7 (AM436525) Vitis vinifera contig VV78X179149.4, whole genome... 34 9.5 3 (AZ607074) 1M0429O18F Mouse 10kb plasmid UUGC1M library Mus ... 28 9.7 4
>(BJ333874) Dictyostelium discoideum cDNA clone:dda44h10, 5' end, single read. Length = 624
Score = 634 bits (320), Expect(2) = 0.0 Identities = 320/320 (100%) Strand = Plus / Plus
Query: 1 ataattcagttatgataaagattggtgaagttgaagtaccagaggatatttataatcaaa 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 ataattcagttatgataaagattggtgaagttgaagtaccagaggatatttataatcaaa 60
Query: 61 aagttgaaaaatggagaaatgattttaatagtatttttagaaatcttgaaacattggaga 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 aagttgaaaaatggagaaatgattttaatagtatttttagaaatcttgaaacattggaga 120
Query: 121 ttgattatacaaaagcaacatttggtttaccaaaagatacaacagttagaagtatttttt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 ttgattatacaaaagcaacatttggtttaccaaaagatacaacagttagaagtatttttt 180
Query: 181 ggagaattgcattaggtaccttatcaaaagatccaaccacttgggttgaaagaacaaatt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 ggagaattgcattaggtaccttatcaaaagatccaaccacttgggttgaaagaacaaatt 240
Query: 241 caagtagaaagaaatatgaaacatttaaaaagaattatattattaatccaagaaattcaa 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 caagtagaaagaaatatgaaacatttaaaaagaattatattattaatccaagaaattcaa 300
Query: 301 aagatcaagatgcagatctt 320 |||||||||||||||||||| Sbjct: 301 aagatcaagatgcagatctt 320
Score = 537 bits (271), Expect(2) = 0.0 Identities = 271/271 (100%) Strand = Plus / Plus
Query: 354 agaaaaccagtatcattaattgatgacccattatcacaaagtgaggatagtttatggaat 413 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 354 agaaaaccagtatcattaattgatgacccattatcacaaagtgaggatagtttatggaat 413
Query: 414 caattttttgataatgaaaatgcacaaagagagattagtcatgacatttcaagaacgtat 473 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 414 caattttttgataatgaaaatgcacaaagagagattagtcatgacatttcaagaacgtat 473
Query: 474 ccaggtttaggatttttcgaaagattagatattcaagatataatgattagaatattattt 533 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 474 ccaggtttaggatttttcgaaagattagatattcaagatataatgattagaatattattt 533
Query: 534 atatttagtaaacaatatccaaagattaagtatcttcaaggtatgaatgaaatattggca 593 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 534 atatttagtaaacaatatccaaagattaagtatcttcaaggtatgaatgaaatattggca 593
Query: 594 ccaattctatactctgtctacaacgattcac 624 ||||||||||||||||||||||||||||||| Sbjct: 594 ccaattctatactctgtctacaacgattcac 624
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 1,212,907,855 Number of extensions: 76869559 Number of successful extensions: 6550613 Number of sequences better than 10.0: 66 Length of query: 1211 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 1187 Effective length of database: 97,308,875,965 Effective search space: 115505635770455 Effective search space used: 115505635770455 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 6.29 |
Homology vs Protein |
Query= Contig-U11362-1 (Contig-U11362-1Q) /CSM_Contig/Contig-U11362-1Q.Seq.d (1211 letters)
Database: nrp_A 3,204,285 sequences; 1,040,966,779 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
BC056792_1(BC056792|pid:none) Danio rerio TBC1 domain family, me... 110 1e-22 BX927400_3(BX927400|pid:none) Zebrafish DNA sequence from clone ... 110 1e-22 AK220251_1(AK220251|pid:none) Mus musculus mRNA for mKIAA0210 pr... 107 6e-22 AK033710_1(AK033710|pid:none) Mus musculus adult male cecum cDNA... 107 6e-22 AK154975_1(AK154975|pid:none) Mus musculus NOD-derived CD11c +ve... 107 6e-22 (Q80XQ2) RecName: Full=TBC1 domain family member 5; &BC043113_1... 107 6e-22 AK144467_1(AK144467|pid:none) Mus musculus 0 day neonate cortex ... 107 6e-22 AK005461_1(AK005461|pid:none) Mus musculus adult female placenta... 107 6e-22 BC072280_1(BC072280|pid:none) Xenopus laevis hypothetical protei... 106 1e-21 AL035528_12(AL035528|pid:none) Arabidopsis thaliana DNA chromoso... 106 1e-21 AB168705_1(AB168705|pid:none) Macaca fascicularis testis cDNA cl... 105 2e-21 D86965_1(D86965|pid:none) Homo sapiens mRNA for KIAA0210 gene, p... 105 2e-21 (Q92609) RecName: Full=TBC1 domain family member 5; &AB383800_1... 105 2e-21 AC146683_4(AC146683|pid:none) Medicago truncatula clone mth2-179... 104 7e-21 AC130798_4(AC130798|pid:none) Medicago truncatula clone mth2-27f... 100 1e-19 AL731623_9(AL731623|pid:none) Oryza sativa genomic DNA, chromoso... 96 3e-18 AK066945_1(AK066945|pid:none) Oryza sativa Japonica Group cDNA c... 95 4e-18 AB019233_2(AB019233|pid:none) Arabidopsis thaliana genomic DNA, ... 93 2e-17 EF148761_1(EF148761|pid:none) Populus trichocarpa x Populus delt... 92 5e-17 AK072293_1(AK072293|pid:none) Oryza sativa Japonica Group cDNA c... 92 5e-17 AP008217_903(AP008217|pid:none) Oryza sativa (japonica cultivar-... 91 6e-17 AC151665_15(AC151665|pid:none) Medicago truncatula clone mth2-7k... 90 2e-16 AP008210_598(AP008210|pid:none) Oryza sativa (japonica cultivar-... 88 5e-16 FN357341_71(FN357341|pid:none) Schistosoma mansoni genome sequen... 87 1e-15 AC004809_18(AC004809|pid:none) Arabidopsis thaliana chromosome 1... 87 2e-15 BT054291_1(BT054291|pid:none) Zea mays full-length cDNA clone ZM... 85 4e-15 AK066731_1(AK066731|pid:none) Oryza sativa Japonica Group cDNA c... 85 6e-15 AC003058_4(AC003058|pid:none) Arabidopsis thaliana chromosome 2 ... 76 2e-12 AE014187_697(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 69 3e-10 AP007159_552(AP007159|pid:none) Aspergillus oryzae RIB40 genomic... 69 3e-10 AM910994_321(AM910994|pid:none) Plasmodium knowlesi strain H chr... 67 1e-09 BC155093_1(BC155093|pid:none) Danio rerio zgc:171891, mRNA (cDNA... 65 4e-09 AE017351_212(AE017351|pid:none) Cryptococcus neoformans var. neo... 65 6e-09 CP001323_47(CP001323|pid:none) Micromonas sp. RCC299 chromosome ... 60 2e-07 (Q9NVG8) RecName: Full=TBC1 domain family member 13; &AL441992_... 57 1e-06 AK001605_1(AK001605|pid:none) Homo sapiens cDNA FLJ10743 fis, cl... 57 1e-06 BC136509_1(BC136509|pid:none) Homo sapiens TBC1 domain family, m... 57 1e-06 AY058542_1(AY058542|pid:none) Drosophila melanogaster LD24460 fu... 56 2e-06 AE014296_1575(AE014296|pid:none) Drosophila melanogaster chromos... 56 2e-06 CU633900_297(CU633900|pid:none) Podospora anserina genomic DNA c... 56 3e-06 BC143010_1(BC143010|pid:none) Synthetic construct Homo sapiens c... 54 1e-05 AL844509_202(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 54 1e-05 FN392319_221(FN392319|pid:none) Pichia pastoris GS115 chromosome... 51 7e-05 AY577002_1(AY577002|pid:none) Danio rerio clone RZ150A4A11 C22or... 50 2e-04 BC125999_1(BC125999|pid:none) Xenopus laevis hypothetical protei... 49 3e-04 CR382137_141(CR382137|pid:none) Debaryomyces hansenii strain CBS... 49 3e-04 (Q9NU19) RecName: Full=TBC1 domain family member 22B; &AB449909... 48 6e-04 BC142187_1(BC142187|pid:none) Bos taurus TBC1 domain family, mem... 48 6e-04 AC002340_10(AC002340|pid:none) Arabidopsis thaliana chromosome 2... 48 8e-04 G84711(G84711)hypothetical protein At2g30710 [imported] - Arabid... 48 8e-04 AK066076_1(AK066076|pid:none) Oryza sativa Japonica Group cDNA c... 47 0.001 Z81074_9(Z81074|pid:none) Caenorhabditis elegans Cosmid F32B6, c... 47 0.002 T21643(T21643) hypothetical protein F32B6.8 - Caenorhabditis ele... 47 0.002 AM910994_53(AM910994|pid:none) Plasmodium knowlesi strain H chro... 47 0.002 Z68117_4(Z68117|pid:none) Caenorhabditis elegans Cosmid F45E6, c... 45 0.004 EU975359_1(EU975359|pid:none) Zea mays clone 488613 TBC1 domain ... 44 0.009 AL109820_17(AL109820|pid:none) S.pombe chromosome I cosmid c1952... 44 0.009 CR380958_448(CR380958|pid:none) Candida glabrata strain CBS138 c... 44 0.009 CP000581_173(CP000581|pid:none) Ostreococcus lucimarinus CCE9901... 44 0.009 AL133498_1(AL133498|pid:none) S.pombe chromosome I cosmid c890. ... 44 0.015 AC115584_16(AC115584|pid:none) Dictyostelium discoideum chromoso... 43 0.020 CR954201_164(CR954201|pid:none) Ostreococcus tauri strain OTTH05... 43 0.020 AE014297_3040(AE014297|pid:none) Drosophila melanogaster chromos... 43 0.020 AP007154_647(AP007154|pid:none) Aspergillus oryzae RIB40 genomic... 43 0.026 AK123828_1(AK123828|pid:none) Homo sapiens cDNA FLJ41834 fis, cl... 42 0.033 AK295183_1(AK295183|pid:none) Homo sapiens cDNA FLJ54808 complet... 42 0.033 (Q08484) RecName: Full=GTPase-activating protein GYP1; AltName: ... 42 0.044 FN357446_26(FN357446|pid:none) Schistosoma mansoni genome sequen... 41 0.074 BT062977_1(BT062977|pid:none) Zea mays full-length cDNA clone ZM... 40 0.13 AM502248_172(AM502248|pid:none) Leishmania infantum chromosome 30. 40 0.17 AM920437_803(AM920437|pid:none) Penicillium chrysogenum Wisconsi... 40 0.17 CU928173_486(CU928173|pid:none) Zygosaccharomyces rouxii strain ... 40 0.22 AM494967_147(AM494967|pid:none) Leishmania braziliensis chromoso... 40 0.22 (O59737) RecName: Full=GTPase-activating protein gyp1; AltName: ... 40 0.22 CP000500_486(CP000500|pid:none) Pichia stipitis CBS 6054 chromos... 40 0.22 (Q09445) RecName: Full=Uncharacterized protein C04A2.1; &U23448... 39 0.28 BX538352_105(BX538352|pid:none) Cryptosporidium parvum chromosom... 39 0.37 CR855616_1(CR855616|pid:none) Xenopus tropicalis finished cDNA, ... 39 0.48 (Q8TBP0) RecName: Full=TBC1 domain family member 16; &AB449902_... 39 0.48 CU928170_739(CU928170|pid:none) Kluyveromyces thermotolerans str... 39 0.48 AL844504_66(AL844504|pid:none) Plasmodium falciparum 3D7 chromos... 38 0.63 AC009259_7(AC009259|pid:none) Trypanosoma brucei chromosome 6 cl... 38 0.82 AL451022_12(AL451022|pid:none) Neurospora crassa DNA linkage gro... 38 0.82 CU640366_1332(CU640366|pid:none) Podospora anserina genomic DNA ... 38 0.82 AY813919_1(AY813919|pid:none) Schistosoma japonicum clone SJCHGC... 37 1.1 AJ720021_1(AJ720021|pid:none) Gallus gallus mRNA for hypothetica... 37 1.1 CR954207_111(CR954207|pid:none) Ostreococcus tauri strain OTTH05... 37 1.4 AB064521_1(AB064521|pid:none) Mus musculus mRNA for KIAA1322, co... 37 1.4 CP000497_296(CP000497|pid:none) Pichia stipitis CBS 6054 chromos... 37 1.8 BC071978_1(BC071978|pid:none) Homo sapiens TBC1 domain family, m... 37 1.8 AC013483_23(AC013483|pid:none) Arabidopsis thaliana chromosome I... 37 1.8 CR382121_338(CR382121|pid:none) Kluyveromyces lactis strain NRRL... 37 1.8 AK228869_1(AK228869|pid:none) Arabidopsis thaliana mRNA for puta... 37 1.8 AK124772_1(AK124772|pid:none) Homo sapiens cDNA FLJ42782 fis, cl... 37 1.8 AF318370_1(AF318370|pid:none) Homo sapiens pp8997 mRNA, complete... 37 1.8 AM502248_321(AM502248|pid:none) Leishmania infantum chromosome 30. 37 1.8 AK068743_1(AK068743|pid:none) Oryza sativa Japonica Group cDNA c... 37 1.8 AB449882_1(AB449882|pid:none) Homo sapiens TBC1D2A mRNA for TBC1... 37 1.8 (P26448) RecName: Full=Mitotic check point protein BUB2; AltName... 37 1.8 BT064954_1(BT064954|pid:none) Zea mays full-length cDNA clone ZM... 37 1.8 AY026527_1(AY026527|pid:none) Homo sapiens prostate antigen PARI... 37 1.8 AK298575_1(AK298575|pid:none) Homo sapiens cDNA FLJ56222 complet... 37 1.8 AL844508_72(AL844508|pid:none) Plasmodium falciparum 3D7 chromos... 36 2.4 EF635009_1(EF635009|pid:none) Xenopus laevis spermatogenesis-rel... 36 2.4 BX284749_3(BX284749|pid:none) Neurospora crassa DNA linkage grou... 36 2.4 AK172979_1(AK172979|pid:none) Mus musculus mRNA for mKIAA0608 pr... 36 3.1 AL049956_1(AL049956|pid:none) Homo sapiens mRNA; cDNA DKFZp564J2... 36 3.1 BC168982_1(BC168982|pid:none) Rattus norvegicus TBC1 domain fami... 36 3.1 AK013092_1(AK013092|pid:none) Mus musculus 10, 11 days embryo wh... 36 3.1 BC041214_1(BC041214|pid:none) Xenopus laevis hypothetical protei... 36 3.1 AL683884_10(AL683884|pid:none) Mouse DNA sequence from clone RP2... 36 3.1 BC160725_1(BC160725|pid:none) Xenopus laevis hypothetical protei... 35 4.1 FM992690_512(FM992690|pid:none) Candida dubliniensis CD36 chromo... 35 4.1 AE014188_398(AE014188|pid:none) Plasmodium falciparum 3D7 chromo... 35 4.1 FM992695_919(FM992695|pid:none) Candida dubliniensis CD36 chromo... 35 4.1 CP001333_70(CP001333|pid:none) Micromonas sp. RCC299 chromosome ... 35 5.3 AE013599_16(AE013599|pid:none) Drosophila melanogaster chromosom... 35 5.3 AE013599_17(AE013599|pid:none) Drosophila melanogaster chromosom... 35 5.3 CU633897_134(CU633897|pid:none) Podospora anserina genomic DNA c... 35 5.3 CR382137_67(CR382137|pid:none) Debaryomyces hansenii strain CBS7... 35 5.3 T19836(T19836)hypothetical protein C38H2.1 - Caenorhabditis eleg... 35 5.3 AB173992_1(AB173992|pid:none) Macaca fascicularis brain cDNA clo... 35 6.9 AB384176_1(AB384176|pid:none) Synthetic construct DNA, clone: pF... 35 6.9 BC001292_1(BC001292|pid:none) Homo sapiens TBC1 domain family, m... 35 6.9 CR860928_1(CR860928|pid:none) Pongo abelii mRNA; cDNA DKFZp469F1... 35 6.9 AK154226_1(AK154226|pid:none) Mus musculus NOD-derived CD11c +ve... 35 6.9 BC096446_1(BC096446|pid:none) Mus musculus TBC1 domain family, m... 35 6.9 AL833868_1(AL833868|pid:none) Homo sapiens mRNA; cDNA DKFZp434K1... 35 6.9 CP000560_192(CP000560|pid:none) Bacillus amyloliquefaciens FZB42... 35 6.9 BC099760_1(BC099760|pid:none) Rattus norvegicus TBC1 domain fami... 35 6.9 (Q8CGA2) RecName: Full=TBC1 domain family member 14; 35 6.9 BC011420_1(BC011420|pid:none) Mus musculus TBC1 domain family, m... 35 6.9 BC042515_1(BC042515|pid:none) Mus musculus TBC1 domain family, m... 35 6.9 (Q9P2M4) RecName: Full=TBC1 domain family member 14; 35 6.9 AL023733_2(AL023733|pid:none) Human DNA sequence from clone SC22... 35 6.9 AB108668_1(AB108668|pid:none) Rattus norvegicus UR-NR#2 mRNA for... 35 6.9 AK055591_1(AK055591|pid:none) Homo sapiens cDNA FLJ31029 fis, cl... 35 6.9 AC084047_21(AC084047|pid:none) Trypanosoma brucei chromosome 6 c... 35 6.9 AK301445_1(AK301445|pid:none) Homo sapiens cDNA FLJ57214 complet... 35 6.9 AK127653_1(AK127653|pid:none) Homo sapiens cDNA FLJ45751 fis, cl... 35 6.9 (Q8R5A6) RecName: Full=TBC1 domain family member 22A; &AK039627... 35 6.9 AB117752_1(AB117752|pid:none) Rattus norvegicus SRF-2 mRNA for h... 35 6.9 AK125705_1(AK125705|pid:none) Homo sapiens cDNA FLJ43717 fis, cl... 35 6.9 BC023106_1(BC023106|pid:none) Mus musculus TBC1 domain family, m... 35 6.9 (Q95KI1) RecName: Full=TBC1 domain family member 22A; Flags: Fra... 35 6.9 AB060857_1(AB060857|pid:none) Macaca fascicularis brain cDNA clo... 35 6.9 AB093293_1(AB093293|pid:none) Mus musculus mRNA for mKIAA1322 pr... 35 6.9 T31583(T31583)hypothetical protein Y48C3A.a - Caenorhabditis ele... 34 9.1 AM270172_24(AM270172|pid:none) Aspergillus niger contig An08c017... 34 9.1 Z80344_8(Z80344|pid:none) Caenorhabditis elegans Cosmid F15D4, c... 34 9.1 CP000241_872(CP000241|pid:none) Helicobacter pylori HPAG1, compl... 34 9.1 FN392319_257(FN392319|pid:none) Pichia pastoris GS115 chromosome... 34 9.1
>BC056792_1(BC056792|pid:none) Danio rerio TBC1 domain family, member 5, mRNA (cDNA clone MGC:63624 IMAGE:5603353), complete cds. Length = 533
Score = 110 bits (275), Expect = 1e-22 Identities = 57/186 (30%), Positives = 103/186 (55%) Frame = +3
Query: 63 VEKWRNDFNSIFRNLETLEIDYTKATFGLPKDTTVRSIFWRIALGTLSKDPTTWVERTNS 242 ++ +R +++ +F+N L G + + RS+ W++ L L +D W+ RT Sbjct: 44 LQSYRKEWDDLFQNSNYLPRIRQAGINGRLRSSRFRSVCWKLYLDVLPEDKAQWISRTKE 103
Query: 243 SRKKYETFKKNYIINPRNSKDQDADLXXXXXXXXXXXRKPVSLIDDPLSQSEDSLWNQFF 422 R +YE K+ +I NPR + Q DL ++++PLSQ E SLWN+FF Sbjct: 104 HRAQYEKIKEMHITNPRKAAGQQ-DL----------------VVNNPLSQDEGSLWNKFF 146
Query: 423 DNENAQREISHDISRTYPGLGFFERLDIQDIMIRILFIFSKQYPKIKYLQGMNEILAPIL 602 ++ + I D+ RT+P + +F+ D++ M ILF ++++ ++ Y QGM+E+LAPI+ Sbjct: 147 QDKELRGMIKQDVLRTFPEMLYFQEEDVRTKMTDILFCYARENEQLLYKQGMHELLAPIV 206
Query: 603 YSVYND 620 + ++ D Sbjct: 207 FVLHCD 212
Lambda K H 0.318 0.134 0.401
Gapped Lambda K H 0.267 0.0410 0.140
Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3204285 Number of Hits to DB: 1,413,387,003 Number of extensions: 24963373 Number of successful extensions: 67680 Number of sequences better than 10.0: 152 Number of HSP's gapped: 67452 Number of HSP's successfully gapped: 167 Length of query: 403 Length of database: 1,040,966,779 Length adjustment: 131 Effective length of query: 272 Effective length of database: 621,205,444 Effective search space: 168967880768 Effective search space used: 168967880768 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 32 (16.9 bits)
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
1 |
VF (FL, S) |
0 |
AH (FL, L) |
1 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |