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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U11357-1
Contig ID Contig-U11357-1
Contig update 2002.12.18
Contig sequence 
>Contig-U11357-1 (Contig-U11357-1Q) /CSM_Contig/Contig-U11357-1Q.Seq.d
TTGGCCTACTGGAAAGCAAATAAATATAATCAATTACAAGAATGATTACT
CACAAAACCAAAATTGTTGCATAAATGAATAAAAAATCACACCAACAGCA
AGTGCTTCAACAACAGCAACAACAACAGCAACAACAATTTCAGCAGCAGC
ATTTTCAACAACAACAACAGCAACAACAATTCCAGCAACAACAACAGCAA
CAGCAACAACTACAACAGCAACAACTACAACAGCAACAGCAACAACAAAT
ACAACAGCAACAACAAATTCAACAGCAGCAACAACAACAGCAGCAACAAC
AACAGCAAATACAACAACAACAACAACCACAGCAAATACAACAACCACAA
CAACAATTACCCAATTTTTCAGTACCAATAATCAACCAATCAATAATTTC
TAATATTAAATTATATTCAACATTTGAAACATTATTACTTTCATTAAGTA
GTACAGATACAAGAGAACAAACCAAAGCAATCATTTATTTATCATCATTA
ACAATTAATAATAAATCCAATGGAATTGATTTAGTATATTGTATTCAAAA
ACAATTAGTAGTTGAAGCACATAATCATATTAAAGTATTATTAATAAATC
TATTAGGTGATATATCTTTAGATCCTTTCATTGATTCATTTCATATTTTA
AATAAATTATTATATTTAATAAGAAATGAAAAATCAAAAAAAGTATTATC
ATCATGTTTAATTAATATAAATAAAATTAGT----------TAGAGAGTG
GTGTTATTGGTGCATTTATTCAAGGATTAGAAGACGAATTTTATGAAGTT
AGATCATCAGCAATTGATAGTATGTGTGAGTTGAGTGTAAGAAATGATGA
ATTTGCTCAAAAGAATATAGATTTCTTGGTTGATATTTTCAATGATGAAA
TTGAATCAGTTAGAATTAATTCAATCAATAGTTTACGTAAAATTGGTAAT
AATGTAGTTATAAAAGAAGAACAGTTACATATTATATTAGCCAATTTAGA
ATCATCAAGTAAAGAAGAGAGACAATCACTTCATCGTTTATTAACAAGTA
TTCATCTTTCAAATTATTCTTGTTTACATGCAACTACTCAAGCATTATTA
ATGAATCTCTCAAGATACCCATACGATATTCATTCAATATTTGAAACTTT
GAAAATCATTGGTCAAACTAATCCATTCACAGAGTTTATAGTCGATGATC
TATTAAGAATTGATCCAAAATTTGCATCAGTTGAACCAAATATGGATGAT
ATATTCTATGTAGCTGTAATGGTTTTAGTATTAAATAGTTGTATTAAAAA
TCGTAATATTCTATCATTATTACCTTCATTCTCTTTTCAACATCATCTTT
ACTTTAAAGATAAATATCCAAAATATTTTCCTCAAAATCTACAAAAAGAT
TCAAATATAATTTTAGCACCAACTTTAAAATATTCATCAGTGTAAATAAT
AATAATAATAAAAAT
Gap gap included
Contig length 1455
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 4737606
End point 4739025
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 4
Link to clone list U11357
List of clone(s) 

est1=CHO758F,1,731
est2=AHG664F,60,713
est3=CHO758Z,732,1427
est4=AHG664Z,881,1456
Translated Amino Acid sequence 
gllesk*i*sitrmithktkiva*MNKKSHQQQVLQQQQQQQQQQFQQQHFQQQQQQQQF
QQQQQQQQQLQQQQLQQQQQQQIQQQQQIQQQQQQQQQQQQQIQQQQQPQQIQQPQQQLP
NFSVPIINQSIISNIKLYSTFETLLLSLSSTDTREQTKAIIYLSSLTINNKSNGIDLVYC
IQKQLVVEAHNHIKVLLINLLGDISLDPFIDSFHILNKLLYLIRNEKSKKVLSSCLININ
KIS---

---ESGVIGAFIQGLEDEFYEVRSSAIDSMCELSVRNDEFAQKNIDFLVDIFNDEIESVR
INSINSLRKIGNNVVIKEEQLHIILANLESSSKEERQSLHRLLTSIHLSNYSCLHATTQA
LLMNLSRYPYDIHSIFETLKIIGQTNPFTEFIVDDLLRIDPKFASVEPNMDDIFYVAVMV
LVLNSCIKNRNILSLLPSFSFQHHLYFKDKYPKYFPQNLQKDSNIILAPTLKYSSV*iii
iik
Translated Amino Acid sequence (All Frames) 
Frame A:
laywkankynqlqe*lltkpkllhk*iknhtnskcfnnsnnnsnnnfsssifnnnnsnnn
ssnnnsnsnnynsnnynsnsnnkynsnnkfnssnnnssnnnskynnnnnhskynnhnnny
pifqyq*stnq*flilnyiqhlkhyyfh*vvqiqenkpkqsfiyhh*qliinpmeli*yi
vfknn**lkhiiilkyy**iy*viyl*ilslihfif*inyyi**emknqkkyyhhv*li*
ikl---

---*rvvllvhlfkd*ktnfmkldhqqlivcvs*v*emmnllkri*iswlifsmmklnql
eliqsivyvklvim*l*kknsyily*pi*nhqvkkrdnhfivy*qvfifqiilvymqllk
hy**isqdthtifiqylkl*kslvklihsqsl*smiy*eliqnlhqlnqiwmiysm*l*w
f*y*ivvlkivifyhyylhslfniiftlkiniqniflkiykkiqi*f*hql*nihqck**
***k

Frame B:
wptgkqiniinykndysqnqnccine*kitptasasttatttattisaaafsttttatti
patttatattttattttatattnttattnstaatttaatttantttttttanttttttit
qffstnnqpinnf*y*iifni*niitfik*yrykrtnqsnhlfiiinn***iqwn*fsil
ysktiss*st*sy*siinksir*yifrsfh*fisyfk*iiifnkk*kikksiiimfn*yk
*n*---

---rewcywciysrirrril*s*iisn**yv*veckk**icskeyrflg*yfq**n*is*
n*fnq*ft*nw**csykrrtvtyyisqfriik*rretitssfinkyssfklflftcnyss
iineslkipirysfni*nfenhwsn*sihrvysr*sikn*skicis*tkyg*yilcscng
fsik*ly*ks*ysiiitfilfstssll*r*iskifsskstkrfkynfstnfkifisvnnn
nnkn

Frame C:
gllesk*i*sitrmithktkiva*MNKKSHQQQVLQQQQQQQQQQFQQQHFQQQQQQQQF
QQQQQQQQQLQQQQLQQQQQQQIQQQQQIQQQQQQQQQQQQQIQQQQQPQQIQQPQQQLP
NFSVPIINQSIISNIKLYSTFETLLLSLSSTDTREQTKAIIYLSSLTINNKSNGIDLVYC
IQKQLVVEAHNHIKVLLINLLGDISLDPFIDSFHILNKLLYLIRNEKSKKVLSSCLININ
KIS---

---ESGVIGAFIQGLEDEFYEVRSSAIDSMCELSVRNDEFAQKNIDFLVDIFNDEIESVR
INSINSLRKIGNNVVIKEEQLHIILANLESSSKEERQSLHRLLTSIHLSNYSCLHATTQA
LLMNLSRYPYDIHSIFETLKIIGQTNPFTEFIVDDLLRIDPKFASVEPNMDDIFYVAVMV
LVLNSCIKNRNILSLLPSFSFQHHLYFKDKYPKYFPQNLQKDSNIILAPTLKYSSV*iii
iik
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U11357-1 (Contig-U11357-1Q)
/CSM_Contig/Contig-U11357-1Q.Seq.d
         (1465 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U11357-1 (Contig-U11357-1Q) /CSM_Contig/Conti...  1427  0.0
Contig-U13054-1 (Contig-U13054-1Q) /CSM_Contig/Conti...    60  7e-09
Contig-U11815-1 (Contig-U11815-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U12155-1 (Contig-U12155-1Q) /CSM_Contig/Conti...    40  0.007
Contig-U10713-1 (Contig-U10713-1Q) /CSM_Contig/Conti...    40  0.007
Contig-U14691-1 (Contig-U14691-1Q) /CSM_Contig/Conti...    38  0.026
Contig-U13586-1 (Contig-U13586-1Q) /CSM_Contig/Conti...    38  0.026
Contig-U11391-1 (Contig-U11391-1Q) /CSM_Contig/Conti...    38  0.026
Contig-U01968-1 (Contig-U01968-1Q) /CSM_Contig/Conti...    38  0.026
Contig-U01641-1 (Contig-U01641-1Q) /CSM_Contig/Conti...    38  0.026

>Contig-U11357-1 (Contig-U11357-1Q) /CSM_Contig/Contig-U11357-1Q.Seq.d
          Length = 1465

 Score = 1427 bits (720), Expect = 0.0
 Identities = 750/750 (100%)
 Strand = Plus / Plus

                                                                        
Query: 693  gtattatcatcatgtttaattaatataaataaaattagtnnnnnnnnnntagagagtggt 752
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693  gtattatcatcatgtttaattaatataaataaaattagtnnnnnnnnnntagagagtggt 752

                                                                        
Query: 753  gttattggtgcatttattcaaggattagaagacgaattttatgaagttagatcatcagca 812
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753  gttattggtgcatttattcaaggattagaagacgaattttatgaagttagatcatcagca 812

                                                                        
Query: 813  attgatagtatgtgtgagttgagtgtaagaaatgatgaatttgctcaaaagaatatagat 872
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813  attgatagtatgtgtgagttgagtgtaagaaatgatgaatttgctcaaaagaatatagat 872

                                                                        
Query: 873  ttcttggttgatattttcaatgatgaaattgaatcagttagaattaattcaatcaatagt 932
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873  ttcttggttgatattttcaatgatgaaattgaatcagttagaattaattcaatcaatagt 932

                                                                        
Query: 933  ttacgtaaaattggtaataatgtagttataaaagaagaacagttacatattatattagcc 992
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 933  ttacgtaaaattggtaataatgtagttataaaagaagaacagttacatattatattagcc 992

                                                                        
Query: 993  aatttagaatcatcaagtaaagaagagagacaatcacttcatcgtttattaacaagtatt 1052
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 993  aatttagaatcatcaagtaaagaagagagacaatcacttcatcgtttattaacaagtatt 1052

                                                                        
Query: 1053 catctttcaaattattcttgtttacatgcaactactcaagcattattaatgaatctctca 1112
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1053 catctttcaaattattcttgtttacatgcaactactcaagcattattaatgaatctctca 1112

                                                                        
Query: 1113 agatacccatacgatattcattcaatatttgaaactttgaaaatcattggtcaaactaat 1172
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1113 agatacccatacgatattcattcaatatttgaaactttgaaaatcattggtcaaactaat 1172

                                                                        
Query: 1173 ccattcacagagtttatagtcgatgatctattaagaattgatccaaaatttgcatcagtt 1232
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1173 ccattcacagagtttatagtcgatgatctattaagaattgatccaaaatttgcatcagtt 1232

                                                                        
Query: 1233 gaaccaaatatggatgatatattctatgtagctgtaatggttttagtattaaatagttgt 1292
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1233 gaaccaaatatggatgatatattctatgtagctgtaatggttttagtattaaatagttgt 1292

                                                                        
Query: 1293 attaaaaatcgtaatattctatcattattaccttcattctcttttcaacatcatctttac 1352
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1293 attaaaaatcgtaatattctatcattattaccttcattctcttttcaacatcatctttac 1352

                                                                        
Query: 1353 tttaaagataaatatccaaaatattttcctcaaaatctacaaaaagattcaaatataatt 1412
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1353 tttaaagataaatatccaaaatattttcctcaaaatctacaaaaagattcaaatataatt 1412

                                          
Query: 1413 ttagcaccaactttaaaatattcatcagtg 1442
            ||||||||||||||||||||||||||||||
Sbjct: 1413 ttagcaccaactttaaaatattcatcagtg 1442


 Score =  646 bits (326), Expect = 0.0
 Identities = 326/326 (100%)
 Strand = Plus / Plus

                                                                       
Query: 353 acaattacccaatttttcagtaccaataatcaaccaatcaataatttctaatattaaatt 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 acaattacccaatttttcagtaccaataatcaaccaatcaataatttctaatattaaatt 412

                                                                       
Query: 413 atattcaacatttgaaacattattactttcattaagtagtacagatacaagagaacaaac 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 atattcaacatttgaaacattattactttcattaagtagtacagatacaagagaacaaac 472

                                                                       
Query: 473 caaagcaatcatttatttatcatcattaacaattaataataaatccaatggaattgattt 532
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 caaagcaatcatttatttatcatcattaacaattaataataaatccaatggaattgattt 532

                                                                       
Query: 533 agtatattgtattcaaaaacaattagtagttgaagcacataatcatattaaagtattatt 592
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 agtatattgtattcaaaaacaattagtagttgaagcacataatcatattaaagtattatt 592

                                                                       
Query: 593 aataaatctattaggtgatatatctttagatcctttcattgattcatttcatattttaaa 652
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 aataaatctattaggtgatatatctttagatcctttcattgattcatttcatattttaaa 652

                                     
Query: 653 taaattattatatttaataagaaatg 678
           ||||||||||||||||||||||||||
Sbjct: 653 taaattattatatttaataagaaatg 678


 Score =  212 bits (107), Expect = 8e-55
 Identities = 107/107 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttggcctactggaaagcaaataaatataatcaattacaagaatgattactcacaaaacca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ttggcctactggaaagcaaataaatataatcaattacaagaatgattactcacaaaacca 60

                                                          
Query: 61  aaattgttgcataaatgaataaaaaatcacaccaacagcaagtgctt 107
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aaattgttgcataaatgaataaaaaatcacaccaacagcaagtgctt 107


>Contig-U13054-1 (Contig-U13054-1Q) /CSM_Contig/Contig-U13054-1Q.Seq.d
          Length = 450

 Score = 60.0 bits (30), Expect = 7e-09
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 13 aaagcaaataaatataatcaattacaagaa 42
          ||||||||||||||||||||||||||||||
Sbjct: 47 aaagcaaataaatataatcaattacaagaa 76


>Contig-U11815-1 (Contig-U11815-1Q) /CSM_Contig/Contig-U11815-1Q.Seq.d
          Length = 2500

 Score = 42.1 bits (21), Expect = 0.002
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 705  tgtttaattaatataaataaa 725
            |||||||||||||||||||||
Sbjct: 2397 tgtttaattaatataaataaa 2417


 Score = 30.2 bits (15), Expect = 6.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                           
Query: 1351 actttaaagataaat 1365
            |||||||||||||||
Sbjct: 1673 actttaaagataaat 1687


 Score = 30.2 bits (15), Expect = 6.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                           
Query: 754  ttattggtgcattta 768
            |||||||||||||||
Sbjct: 1532 ttattggtgcattta 1546


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 27,674
Number of Sequences: 6905
Number of extensions: 27674
Number of successful extensions: 3418
Number of sequences better than 10.0: 424
length of query: 1465
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1449
effective length of database: 5,564,391
effective search space: 8062802559
effective search space used: 8062802559
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.23
Homology vs DNA 
Query= Contig-U11357-1 (Contig-U11357-1Q) /CSM_Contig/Contig-U11357-1Q.Seq.d
         (1465 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ385017) Dictyostelium discoideum cDNA clone:ddc51d15, 3' ...  1324   0.0    2
(BJ351818) Dictyostelium discoideum cDNA clone:dda44o16, 3' ...  1094   0.0    1
(BJ369721) Dictyostelium discoideum cDNA clone:ddc51d15, 5' ...   563   0.0    3
(BJ333980) Dictyostelium discoideum cDNA clone:dda44o16, 5' ...   563   0.0    3
(X95276) Plasmodium falciparum complete gene map of plastid-...    38   5e-08  9
(DQ642846) Plasmodium falciparum HB3 apicoplast, complete ge...    38   7e-06  10
(AU265216) Dictyostelium discoideum vegetative cDNA clone:VS...    62   6e-05  1
(AF203735) Dictyostelium discoideum culmination specific pro...    60   2e-04  1
(AU074819) Dictyostelium discoideum slug cDNA, clone SSM163.       60   2e-04  1
(BJ422664) Dictyostelium discoideum cDNA clone:ddv46l16, 5' ...    60   2e-04  1
(BJ422552) Dictyostelium discoideum cDNA clone:ddv46f07, 5' ...    60   2e-04  1
(BJ406395) Dictyostelium discoideum cDNA clone:dds35j03, 3' ...    60   2e-04  1
(BJ406163) Dictyostelium discoideum cDNA clone:dds34i12, 3' ...    60   2e-04  1
(BJ403869) Dictyostelium discoideum cDNA clone:dds26f14, 3' ...    60   2e-04  1
(BJ394431) Dictyostelium discoideum cDNA clone:dds35j03, 5' ...    60   2e-04  1
(BJ394240) Dictyostelium discoideum cDNA clone:dds34i12, 5' ...    60   2e-04  1
(BJ392143) Dictyostelium discoideum cDNA clone:dds26f14, 5' ...    60   2e-04  1
(BJ383782) Dictyostelium discoideum cDNA clone:ddc47o05, 3' ...    60   2e-04  1
(BJ372555) Dictyostelium discoideum cDNA clone:ddc13j03, 3' ...    60   2e-04  1
(BJ367711) Dictyostelium discoideum cDNA clone:ddc43p16, 5' ...    60   2e-04  1
(BJ359164) Dictyostelium discoideum cDNA clone:ddc13j03, 5' ...    60   2e-04  1
(AX344551) Sequence 2 from Patent WO0200932.                       38   8e-04  14
(AU073935) Dictyostelium discoideum slug cDNA, clone SSI772.       58   0.001  1
(AE014834) Plasmodium falciparum 3D7 chromosome 10 section 6...    38   0.002  12
(AX392735) Sequence 25 from Patent WO0212526.                      44   0.003  8
(AR707082) Sequence 25 from patent US 6933145.                     44   0.003  8
(AE014831) Plasmodium falciparum 3D7 chromosome 10 section 3...    40   0.006  13
(AL035475) Plasmodium falciparum MAL4P2.                           32   0.006  15
(ET102769) QM0AAB21BD01FM1 CCER1 Citrus clementina genomic c...    38   0.007  4
(AL844509) Plasmodium falciparum chromosome 13.                    34   0.009  20
(EB363116) naz04g09.y1 Guinea pig retina. Unnormalized (naz)...    54   0.015  1
(AU267846) Dictyostelium discoideum vegetative cDNA clone:VS...    54   0.015  1
(AU267845) Dictyostelium discoideum vegetative cDNA clone:VS...    54   0.015  1
(AE014845) Plasmodium falciparum 3D7 chromosome 12, section ...    34   0.017  13
(AE014832) Plasmodium falciparum 3D7 chromosome 10 section 4...    38   0.021  14
(DQ229107) Chara vulgaris chloroplast, complete genome.            34   0.027  13
(AJ294725) Astasia longa complete chloroplast genome.              32   0.028  12
(AC149579) Medicago truncatula clone mth2-99d8, complete seq...    40   0.034  6
(CW952344) TcB38.1_D03_SP6 Tribolium BAC library Tribolium c...    42   0.037  2
(AY531391) Schizaphis graminum mitochondrion, complete genome.     36   0.041  6
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    36   0.042  20
(AC149641) Medicago truncatula chromosome 7 clone mth2-55l11...    40   0.043  6
(FH991232) CHO_OF6849xk08r1.ab1 CHO_OF6 Nicotiana tabacum ge...    52   0.061  1
(ER864942) PPTDD04TR Solanum tuberosum RHPOTKEY BAC ends Sol...    52   0.061  1
(AU261759) Dictyostelium discoideum vegetative cDNA clone:VS...    52   0.061  1
(AU071276) Dictyostelium discoideum slug cDNA, clone SSB104.       52   0.061  1
(EX641663) 256639738 Pea aphid whole body normalized full le...    52   0.061  1
(EX631683) 255535693 Pea aphid whole body normalized full le...    52   0.061  1
(EU004203) Saccharomyces cerevisiae YJM789 mitochondrion, co...    38   0.062  8
(AL844507) Plasmodium falciparum chromosome 8.                     36   0.071  18
(AL929355) Plasmodium falciparum strain 3D7, chromosome 9; s...    36   0.073  14
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl...    30   0.075  18
(AC005139) Plasmodium falciparum chromosome 12, *** SEQUENCI...    30   0.080  16
(CP000673) Clostridium kluyveri DSM 555, complete genome.          40   0.084  18
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    36   0.087  18
(AL929354) Plasmodium falciparum strain 3D7, chromosome 5, s...    36   0.094  15
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome.         32   0.11   20
(AJ011856) Saccharomyces cerevisiae complete mitochondrial g...    38   0.11   10
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet...    36   0.12   19
(AM285313) Spiroplasma citri GII3-3X chromosome, contig Cont...    32   0.13   8
(CP000382) Clostridium novyi NT, complete genome.                  42   0.16   18
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    36   0.16   20
(BM161193) EST563716 PyBS Plasmodium yoelii yoelii cDNA clon...    36   0.19   3
(AM425620) Vitis vinifera contig VV78X235503.4, whole genome...    46   0.20   2
(AX346660) Sequence 1731 from Patent WO0200928.                    32   0.24   5
(CR855258) Zebrafish DNA sequence from clone DKEY-2N12 in li...    50   0.24   1
(BX324171) Zebrafish DNA sequence from clone DKEYP-57C9 in l...    50   0.24   1
(AZ124612) b847r S. bayanus genomic library Saccharomyces ba...    50   0.24   1
(EX641930) 256639658 Pea aphid whole body normalized full le...    50   0.24   1
(AL929358) Plasmodium falciparum strain 3D7, chromosome 9; s...    34   0.28   15
(DR411773) gPGC_EST01615 Embryonic gonadal PGC cDNA Library ...    34   0.30   4
(AF160864) Tetrahymena pyriformis mitochondrial DNA, complet...    32   0.31   9
(CR382399) Plasmodium falciparum chromosome 6, complete sequ...    36   0.32   14
(CR767821) Ehrlichia ruminantium strain Welgevonden, complet...    38   0.32   18
(EE603950) BT-HINST-026-1-E6-T3_E06 Whitefly Bemisia tabaci ...    40   0.33   3
(AC201215) Strongylocentrotus purpuratus clone R3-15E19, WOR...    40   0.35   5
(AE014849) Plasmodium falciparum 3D7 chromosome 12, section ...    36   0.36   13
(ER615942) 1093017247938 Global-Ocean-Sampling_GS-36-01-01-2...    48   0.36   2
(AC005507) Plasmodium falciparum chromosome 12 clone 3D7, **...    36   0.40   12
(AC182373) Bos taurus clone CH240-497M2, WORKING DRAFT SEQUE...    40   0.40   4
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    36   0.45   16
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098...    34   0.47   10
(CS468878) Sequence 69 from Patent EP1748080.                      30   0.48   15
(CS419355) Sequence 69 from Patent WO2006094836.                   30   0.48   15
(AC199591) Macaca mulatta clone CH250-134L12, WORKING DRAFT ...    38   0.52   2
(AC212512) Macaca mulatta  BAC CH250-350L8 (Children's Hospi...    38   0.52   2
(AC202606) Macaca mulatta clone CH250-3N18, WORKING DRAFT SE...    38   0.52   2
(AC211793) Macaca mulatta  BAC CH250-414F21 (Children's Hosp...    38   0.53   2
(CP000029) Staphylococcus epidermidis RP62A, complete genome.      36   0.57   19
(AL844506) Plasmodium falciparum chromosome  7.                    36   0.57   18
(CP000962) Clostridium botulinum A3 str. Loch Maree, complet...    36   0.58   22
(AM475808) Vitis vinifera contig VV78X222938.30, whole genom...    36   0.58   2
(AL772138) Mouse DNA sequence from clone RP23-213F17 on chro...    36   0.60   6
(AC116924) Dictyostelium discoideum chromosome 2 map 6357117...    36   0.63   8
(AJ928836) Theileria annulata EST, clone tam020g08_q1k.            34   0.67   2
(AM625835) Entamoeba dispar GSS, clone dispar121e02.p1k.           38   0.68   2
(CT009687) Zebrafish DNA sequence from clone DKEY-5I20 in li...    34   0.70   9
(EG552294) MM01J03_XP Sugar Beet germination cDNA library Be...    36   0.72   3
(EF421550) Diabrotica balteata 12S ribosomal RNA gene, parti...    44   0.79   2
(AE014816) Plasmodium falciparum 3D7 chromosome 14 section 1...    36   0.86   11

>(BJ385017) Dictyostelium discoideum cDNA clone:ddc51d15, 3' end,
            single read.
          Length = 694

 Score = 1324 bits (668), Expect(2) = 0.0
 Identities = 668/668 (100%)
 Strand = Plus / Minus


Query: 742  tagagagtggtgttattggtgcatttattcaaggattagaagacgaattttatgaagtta 801
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694  tagagagtggtgttattggtgcatttattcaaggattagaagacgaattttatgaagtta 635


Query: 802  gatcatcagcaattgatagtatgtgtgagttgagtgtaagaaatgatgaatttgctcaaa 861
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634  gatcatcagcaattgatagtatgtgtgagttgagtgtaagaaatgatgaatttgctcaaa 575


Query: 862  agaatatagatttcttggttgatattttcaatgatgaaattgaatcagttagaattaatt 921
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574  agaatatagatttcttggttgatattttcaatgatgaaattgaatcagttagaattaatt 515


Query: 922  caatcaatagtttacgtaaaattggtaataatgtagttataaaagaagaacagttacata 981
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514  caatcaatagtttacgtaaaattggtaataatgtagttataaaagaagaacagttacata 455


Query: 982  ttatattagccaatttagaatcatcaagtaaagaagagagacaatcacttcatcgtttat 1041
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454  ttatattagccaatttagaatcatcaagtaaagaagagagacaatcacttcatcgtttat 395


Query: 1042 taacaagtattcatctttcaaattattcttgtttacatgcaactactcaagcattattaa 1101
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394  taacaagtattcatctttcaaattattcttgtttacatgcaactactcaagcattattaa 335


Query: 1102 tgaatctctcaagatacccatacgatattcattcaatatttgaaactttgaaaatcattg 1161
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334  tgaatctctcaagatacccatacgatattcattcaatatttgaaactttgaaaatcattg 275


Query: 1162 gtcaaactaatccattcacagagtttatagtcgatgatctattaagaattgatccaaaat 1221
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274  gtcaaactaatccattcacagagtttatagtcgatgatctattaagaattgatccaaaat 215


Query: 1222 ttgcatcagttgaaccaaatatggatgatatattctatgtagctgtaatggttttagtat 1281
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214  ttgcatcagttgaaccaaatatggatgatatattctatgtagctgtaatggttttagtat 155


Query: 1282 taaatagttgtattaaaaatcgtaatattctatcattattaccttcattctcttttcaac 1341
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154  taaatagttgtattaaaaatcgtaatattctatcattattaccttcattctcttttcaac 95


Query: 1342 atcatctttactttaaagataaatatccaaaatattttcctcaaaatctacaaaaagatt 1401
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94   atcatctttactttaaagataaatatccaaaatattttcctcaaaatctacaaaaagatt 35


Query: 1402 caaatata 1409
            ||||||||
Sbjct: 34   caaatata 27

 Score = 32.2 bits (16), Expect(2) = 0.0
 Identities = 19/20 (95%)
 Strand = Plus / Minus


Query: 1412 tttagcaccaactttaaaat 1431
            |||||||||||||| |||||
Sbjct: 26   tttagcaccaacttaaaaat 7

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,633,950,977
Number of extensions: 108812624
Number of successful extensions: 9928336
Number of sequences better than 10.0: 321
Length of query: 1465
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1441
Effective length of database: 97,308,875,965
Effective search space: 140222090265565
Effective search space used: 140222090265565
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.29
Homology vs Protein 
Query= Contig-U11357-1 (Contig-U11357-1Q) /CSM_Contig/Contig-U11357-1Q.Seq.d
         (1465 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54LH5) RecName: Full=Integrator complex subunit 4 homolog;          460   e-128
(Q96HW7) RecName: Full=Integrator complex subunit 4;          Sh...   182   3e-44
BC008013_1(BC008013|pid:none) Homo sapiens integrator complex su...   182   3e-44
BC015664_1(BC015664|pid:none) Homo sapiens integrator complex su...   182   3e-44
(Q8CIM8) RecName: Full=Integrator complex subunit 4;          Sh...   180   1e-43
(Q68F70) RecName: Full=Integrator complex subunit 4;          Sh...   179   3e-43
(Q2T9F4) RecName: Full=Integrator complex subunit 4-like protein...   179   3e-43
(Q96LV5) RecName: Full=Integrator complex subunit 4-like protein...   178   4e-43
AE014298_1248(AE014298|pid:none) Drosophila melanogaster chromos...   168   5e-40
BC009995_1(BC009995|pid:none) Homo sapiens integrator complex su...   137   8e-31
AK163383_1(AK163383|pid:none) Mus musculus 2 cells egg cDNA, RIK...   137   8e-31
EU446555_1(EU446555|pid:none) Synthetic construct Homo sapiens c...   136   2e-30
FN357294_17(FN357294|pid:none) Schistosoma mansoni genome sequen...   127   1e-27
T26134(T26134)hypothetical protein W04A4.5 - Caenorhabditis eleg...   116   2e-24
BC109487_1(BC109487|pid:none) Bos taurus integrator complex subu...   105   4e-21
BC009859_1(BC009859|pid:none) Homo sapiens integrator complex su...   100   1e-19
AY065129_1(AY065129|pid:none) Arabidopsis thaliana unknown prote...    84   1e-14
AC084405_11(AC084405|pid:none) Oryza sativa chromosome 3 BAC OSJ...    69   6e-10
AK067596_1(AK067596|pid:none) Oryza sativa Japonica Group cDNA c...    50   3e-04
AL590451_92(AL590451|pid:none) chromosome IX of strain GB-M1 of ...    49   5e-04
CP000111_1959(CP000111|pid:none) Prochlorococcus marinus str. MI...    46   0.004
AL844505_133(AL844505|pid:none) Plasmodium falciparum 3D7 chromo...    42   0.056
CP000502_95(CP000502|pid:none) Pichia stipitis CBS 6054 chromoso...    42   0.073
CP001141_67(CP001141|pid:none) Phaeodactylum tricornutum CCAP 10...    40   0.16
BC006369_1(BC006369|pid:none) Homo sapiens integrator complex su...    39   0.47
AB2239(AB2239) hypothetical protein all3465 [imported] - Nostoc ...    39   0.62
CP000361_701(CP000361|pid:none) Arcobacter butzleri RM4018, comp...    38   1.1
FN357358_10(FN357358|pid:none) Schistosoma mansoni genome sequen...    38   1.1
CR382133_490(CR382133|pid:none) Debaryomyces hansenii strain CBS...    37   1.8
AM180252_1137(AM180252|pid:none) Lawsonia intracellularis PHE/MN...    37   2.4
BT011188_1(BT011188|pid:none) Drosophila melanogaster RE06749 fu...    37   2.4
AM778954_100(AM778954|pid:none) Microcystis aeruginosa PCC 7806 ...    37   2.4
AL844509_614(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    36   3.1
BT001870_1(BT001870|pid:none) Drosophila melanogaster SD05534 fu...    36   3.1
CR382133_95(CR382133|pid:none) Debaryomyces hansenii strain CBS7...    36   4.0
AL844505_229(AL844505|pid:none) Plasmodium falciparum 3D7 chromo...    36   4.0
AL034556_5(AL034556|pid:none) Plasmodium falciparum MAL3P5, comp...    36   4.0
FM992695_746(FM992695|pid:none) Candida dubliniensis CD36 chromo...    35   5.2
CP000099_1764(CP000099|pid:none) Methanosarcina barkeri str. Fus...    35   5.2
CU928169_156(CU928169|pid:none) Kluyveromyces thermotolerans str...    35   5.2
BX548174_1268(BX548174|pid:none) Prochlorococcus marinus MED4 co...    35   6.9
(P52448) RecName: Full=Alkaline exonuclease;          EC=3.1.11....    35   6.9
CP000075_2226(CP000075|pid:none) Pseudomonas syringae pv. syring...    35   6.9
CP000312_56(CP000312|pid:none) Clostridium perfringens SM101, co...    35   6.9
CP000859_2010(CP000859|pid:none) Desulfococcus oleovorans Hxd3, ...    35   8.9
FN359148_3(FN359148|pid:none) Schistosoma mansoni genome sequenc...    35   8.9
CP000246_53(CP000246|pid:none) Clostridium perfringens ATCC 1312...    35   8.9

>(Q54LH5) RecName: Full=Integrator complex subunit 4 homolog;
          Length = 1233

 Score =  460 bits (1183), Expect = e-128
 Identities = 233/233 (100%), Positives = 233/233 (100%)
 Frame = +3

Query: 744  ESGVIGAFIQGLEDEFYEVRSSAIDSMCELSVRNDEFAQKNIDFLVDIFNDEIESVRINS 923
            ESGVIGAFIQGLEDEFYEVRSSAIDSMCELSVRNDEFAQKNIDFLVDIFNDEIESVRINS
Sbjct: 489  ESGVIGAFIQGLEDEFYEVRSSAIDSMCELSVRNDEFAQKNIDFLVDIFNDEIESVRINS 548

Query: 924  INSLRKIGNNVVIKEEQLHIILANLESSSKEERQSLHRLLTSIHLSNYSCLHATTQALLM 1103
            INSLRKIGNNVVIKEEQLHIILANLESSSKEERQSLHRLLTSIHLSNYSCLHATTQALLM
Sbjct: 549  INSLRKIGNNVVIKEEQLHIILANLESSSKEERQSLHRLLTSIHLSNYSCLHATTQALLM 608

Query: 1104 NLSRYPYDIHSIFETLKIIGQTNPFTEFIVDDLLRIDPKFASVEPNMDDIFYVAVMVLVL 1283
            NLSRYPYDIHSIFETLKIIGQTNPFTEFIVDDLLRIDPKFASVEPNMDDIFYVAVMVLVL
Sbjct: 609  NLSRYPYDIHSIFETLKIIGQTNPFTEFIVDDLLRIDPKFASVEPNMDDIFYVAVMVLVL 668

Query: 1284 NSCIKNRNILSLLPSFSFQHHLYFKDKYPKYFPQNLQKDSNIILAPTLKYSSV 1442
            NSCIKNRNILSLLPSFSFQHHLYFKDKYPKYFPQNLQKDSNIILAPTLKYSSV
Sbjct: 669  NSCIKNRNILSLLPSFSFQHHLYFKDKYPKYFPQNLQKDSNIILAPTLKYSSV 721

 Score =  206 bits (523), Expect = 2e-51
 Identities = 120/211 (56%), Positives = 137/211 (64%)
 Frame = +3

Query: 363 NFSVPIINQSIISNIKLYXXXXXXXXXXXXXXXREQTKAIIYLSSLTINNKSNGIDLVYC 542
           NFSVPIINQSIISNIKLY               REQTKAIIYLSSLTINNKSNGIDLVYC
Sbjct: 97  NFSVPIINQSIISNIKLYSTFETLLLSLSSTDTREQTKAIIYLSSLTINNKSNGIDLVYC 156

Query: 543 IQKQLVVEAHNHIKVLLINLLGDISLDPFIDSFHILNKLLYLIRNEKSKKVLSSCLININ 722
           IQKQLVVEAHNHIKVLLINLLGDISLDPFIDSFHILNKLLYLIRNEKSKKVLSSCLININ
Sbjct: 157 IQKQLVVEAHNHIKVLLINLLGDISLDPFIDSFHILNKLLYLIRNEKSKKVLSSCLININ 216

Query: 723 KISXXXXESGVIGAFIQGLEDEFYEVRSSAIDSMCELSVRNDEFAQKNIDFLVDIFNDEI 902
           KIS                       +S       +++  +     + I+++  + +
Sbjct: 217 KIS-----------------------KSLTFSKGNDVNSSSSSLINQIIEYIEPLLHSTS 253

Query: 903 ESVRINSINSLRKIGNNVVIKEEQLHIILAN 995
             VR  +I  L  I  N+  + E++ I+L N
Sbjct: 254 PLVRRETIVLLGSIVKNLDKESEEIQILLLN 284

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,465,401,136
Number of extensions: 24427497
Number of successful extensions: 67716
Number of sequences better than 10.0: 47
Number of HSP's gapped: 67656
Number of HSP's successfully gapped: 48
Length of query: 488
Length of database: 1,040,966,779
Length adjustment: 133
Effective length of query: 355
Effective length of database: 614,796,874
Effective search space: 218252890270
Effective search space used: 218252890270
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.75  gvh: 0.21  alm: 0.33  top: 0.53  tms: 0.00  mit: 0.39  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 28.0 %: nuclear
	 16.0 %: mitochondrial
	 12.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for Contig-U11357-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 1
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0