Contig-U11356-1
Contig ID Contig-U11356-1
Contig update 2002.12.18
Contig sequence
>Contig-U11356-1 (Contig-U11356-1Q) /CSM_Contig/Contig-U11356-1Q.Seq.d
TAATTAATTAATTAACTTTTATTATTATTTTTTTTATTTTTATTTTTTTT
TTAAAATTAATTAATATTTAAAAAAAAATGGTTANAAAGTTATTTAATAC
ATCACATAAAAAAGAATTAATATTANGATGTTGATACGACCATTGTAAAA
ATTGGAACACCAAAGAATGTTGTATTATTAACAAAATGGTTANATGCAAA
TGGAGCAATTAAAGAANAAGGNGTATTTANAGTAAATGGTAATACAACAA
CAATGGAACAAATTAAAAAGAATTTTAGTCAAGGAAAAGATGATTTAACT
AAATACACTTCTGCTGATATTCATTCAATGGCTGGTTGTTTAAAATTCAT
TTTAAGANAATTACCAGAACCAATATTCACTTGGGATTTTTATCCAATAT
TTATAAAAATACAATGTTTACAAGATGAATCAAGGAAATTATTTTTTTTT
AAAAATGTTAATTCACGGTTTACCATATACAAGTAGAACATTAGTATTTC
AATTGTTTGGATTTTTAAGTAAATTTTCAGTACATCAAGATCAAAATAAA
ATGACTCCAAAAAATTTAGCAACAGTTTTTGCACC----------CACCA
CCAACTATTACAACCACTACTACCACTACCACTACTACCACTACTACCAC
AATTGCAACAACACCCACCTCCACCATCAAAACCATTACCAAATATTCCT
GTAAAAGATCAACAATTTAATACATTAAAAAGATCAACAATTGAAATTCC
ACCACCAACAATAACATCAACCAATATTAATAACAATAATAATACTATTA
ATCCAAGAACATTAAATTATAGTTTTTCATCATTTTCAATTACTTATAAT
AATAGTCAATTAGGTGGACAATTATCACAAGAAGAACCTCCAGGTGGAGT
CAAATCACAATCTTCTTACTTGGATAATAATAATTTACCATCCAGAAATA
CAAATATTCCAAATTTACCACCAAGACCTCCACCTTTAAATATTCCACAA
CAACAACAACAATATAAACCATTACCATCACCACCACAATTACAATCACC
ACAATCATCTTTAAATCAATCTTTACAAATTCCATTACAACAACAACAAC
AAGTACAACAACAAAAGTTGACTACACATTATATATTACCACCTCAAAAT
ACAAATTTAAGTGGAAAAAATCTTCAAAGATCATCAACATCAATGTTACT
TAATAAATTACCACCACCACCATTTAGTTTTAATAAAAATTAAAATATAC
ATTTATATATATATAAAATTAATTCATATAAAAAAATTA

Gap gap included
Contig length 1279
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 213360
End point 214640
Strand (PLUS/MINUS) PLUS
Number of clones 5
Number of EST 7
Link to clone list U11356
List of clone(s)

est1=AHG655F,1,478
est2=AHJ286F,1,585
est3=AHB634Z,586,1280
est4=AHJ286Z,591,846
est5=AHG655Z,705,1213
est6=SLI643Z,768,1260
est7=SFI226Z,1004,1230
Translated Amino Acid sequence
n*linfyyyffyfyfffkin*ylkkngxkvi*yit*krinixmlirpl*klehqrmlyy*
qngxmqmeqlkxkxylx*mviqqqwnklkrilvkekmi*lntlllifiqwlvv*nsf*xn
yqnqyslgifiqyl*KYNVYKMNQGNYFFLKMLIHGLPYTSRTLVFQLFGFLSKFSVHQD
QNKMTPKNLATVFA---

---HHQLLQPLLPLPLLPLLPQLQQHPPPPSKPLPNIPVKDQQFNTLKRSTIEIPPPTIT
STNINNNNNTINPRTLNYSFSSFSITYNNSQLGGQLSQEEPPGGVKSQSSYLDNNNLPSR
NTNIPNLPPRPPPLNIPQQQQQYKPLPSPPQLQSPQSSLNQSLQIPLQQQQQVQQQKLTT
HYILPPQNTNLSGKNLQRSSTSMLLNKLPPPPFSFNKN*nihlyiykinsykki


Translated Amino Acid sequence (All Frames)
Frame A:
*lin*llllfflflfff*n*lifkkkwlxsylihhikkn*yxdvdttivkigtpknvvll
tkwlxangaikexgvfxvngntttmeqikknfsqgkddltkytsadihsmagclkfilrx
lpepiftwdfypifikiqclqdesrklfffknvnsrftiyk*nisisivwifk*ifstsr
sk*ndskkfsnsfct---

---HHQLLQPLLPLPLLPLLPQLQQHPPPPSKPLPNIPVKDQQFNTLKRSTIEIPPPTIT
STNINNNNNTINPRTLNYSFSSFSITYNNSQLGGQLSQEEPPGGVKSQSSYLDNNNLPSR
NTNIPNLPPRPPPLNIPQQQQQYKPLPSPPQLQSPQSSLNQSLQIPLQQQQQVQQQKLTT
HYILPPQNTNLSGKNLQRSSTSMLLNKLPPPPFSFNKN*nihlyiykinsykki

Frame B:
n*linfyyyffyfyfffkin*ylkkngxkvi*yit*krinixmlirpl*klehqrmlyy*
qngxmqmeqlkxkxylx*mviqqqwnklkrilvkekmi*lntlllifiqwlvv*nsf*xn
yqnqyslgifiqyl*KYNVYKMNQGNYFFLKMLIHGLPYTSRTLVFQLFGFLSKFSVHQD
QNKMTPKNLATVFA---

---ttnyynhyyhyhyyhyyhncnnthlhhqnhyqifl*kinnlih*kdqqlkfhhqq*h
qpilitiiilliqeh*iivfhhfqlliiivn*vdnyhkknlqvesnhnlltwiiiiyhpe
iqifqiyhqdlhl*ifhnnnnninhyhhhhnynhhnhl*inlykfhynnnnkynnks*lh
iiyyhlkiqi*vekifkdhqhqcylinyhhhhlvlikikiyiyiyiklihikkl

Frame C:
in*ltfiiiffififflklini*kkmvxklfntshkkelilxc*ydhcknwntkecciin
kmvxckwsn*rxrxixskw*ynnngtn*kef*srkr*fn*ihfc*ysfngwlfkihfkxi
trtnihlgflsniykntmftr*ikeiiff*kc*ftvyhiqveh*yfncldf*vnfqyiki
kik*lqki*qqflh---

---pptittttttttttttttiattptstiktitkysckrsti*yikkinn*nsttnnni
nqy**q**yy*sknikl*ffiifnyl***sirwtiitrrtsrwsqitifllg***ftiqk
ykyskfttktstfkysttttti*tititttitittiifksiftnsitttttstttkvdyt
lyittskykfkwkksskiininvt**itttti*f**klkytfiyi*n*fi*kn

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U11356-1 (Contig-U11356-1Q)
/CSM_Contig/Contig-U11356-1Q.Seq.d
(1289 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U11356-1 (Contig-U11356-1Q) /CSM_Contig/Conti... 910 0.0
Contig-U14083-1 (Contig-U14083-1Q) /CSM_Contig/Conti... 44 4e-04
Contig-U13156-1 (Contig-U13156-1Q) /CSM_Contig/Conti... 44 4e-04
Contig-U11865-1 (Contig-U11865-1Q) /CSM_Contig/Conti... 44 4e-04
Contig-U08277-1 (Contig-U08277-1Q) /CSM_Contig/Conti... 44 4e-04
Contig-U06468-1 (Contig-U06468-1Q) /CSM_Contig/Conti... 44 4e-04
Contig-U13324-1 (Contig-U13324-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U12492-1 (Contig-U12492-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U12289-1 (Contig-U12289-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U05105-1 (Contig-U05105-1Q) /CSM_Contig/Conti... 42 0.001

>Contig-U11356-1 (Contig-U11356-1Q) /CSM_Contig/Contig-U11356-1Q.Seq.d
Length = 1289

Score = 910 bits (459), Expect = 0.0
Identities = 498/507 (98%)
Strand = Plus / Plus


Query: 79 tggttanaaagttatttaatacatcacataaaaaagaattaatattangatgttgatacg 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79 tggttanaaagttatttaatacatcacataaaaaagaattaatattangatgttgatacg 138


Query: 139 accattgtaaaaattggaacaccaaagaatgttgtattattaacaaaatggttanatgca 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 accattgtaaaaattggaacaccaaagaatgttgtattattaacaaaatggttanatgca 198


Query: 199 aatggagcaattaaagaanaaggngtatttanagtaaatggtaatacaacaacaatggaa 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 aatggagcaattaaagaanaaggngtatttanagtaaatggtaatacaacaacaatggaa 258


Query: 259 caaattaaaaagaattttagtcaaggaaaagatgatttaactaaatacacttctgctgat 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 caaattaaaaagaattttagtcaaggaaaagatgatttaactaaatacacttctgctgat 318


Query: 319 attcattcaatggctggttgtttaaaattcattttaaganaattaccagaaccaatattc 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 attcattcaatggctggttgtttaaaattcattttaaganaattaccagaaccaatattc 378


Query: 379 acttgggatttttatccaatatttataaaaatacaatgtttacaagatgaatcaaggaaa 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 acttgggatttttatccaatatttataaaaatacaatgtttacaagatgaatcaaggaaa 438


Query: 439 ttannnnnnnnnaaaaatgttaattcacggtttaccatatacaagtagaacattagtatt 498
||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ttatttttttttaaaaatgttaattcacggtttaccatatacaagtagaacattagtatt 498


Query: 499 tcaattgtttggatttttaagtaaattttcagtacatcaagatcaaaataaaatgactcc 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tcaattgtttggatttttaagtaaattttcagtacatcaagatcaaaataaaatgactcc 558


Query: 559 aaaaaatttagcaacagtttttgcacc 585
|||||||||||||||||||||||||||
Sbjct: 559 aaaaaatttagcaacagtttttgcacc 585


Score = 866 bits (437), Expect = 0.0
Identities = 437/437 (100%)
Strand = Plus / Plus


Query: 650 caattgcaacaacacccacctccaccatcaaaaccattaccaaatattcctgtaaaagat 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 caattgcaacaacacccacctccaccatcaaaaccattaccaaatattcctgtaaaagat 709


Query: 710 caacaatttaatacattaaaaagatcaacaattgaaattccaccaccaacaataacatca 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 caacaatttaatacattaaaaagatcaacaattgaaattccaccaccaacaataacatca 769


Query: 770 accaatattaataacaataataatactattaatccaagaacattaaattatagtttttca 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 accaatattaataacaataataatactattaatccaagaacattaaattatagtttttca 829


Query: 830 tcattttcaattacttataataatagtcaattaggtggacaattatcacaagaagaacct 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 tcattttcaattacttataataatagtcaattaggtggacaattatcacaagaagaacct 889


Query: 890 ccaggtggagtcaaatcacaatcttcttacttggataataataatttaccatccagaaat 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 ccaggtggagtcaaatcacaatcttcttacttggataataataatttaccatccagaaat 949


Query: 950 acaaatattccaaatttaccaccaagacctccacctttaaatattccacaacaacaacaa 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 950 acaaatattccaaatttaccaccaagacctccacctttaaatattccacaacaacaacaa 1009


Query: 1010 caatataaaccattaccatcaccaccacaattacaatcaccacaatcatctttaaatcaa 1069
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1010 caatataaaccattaccatcaccaccacaattacaatcaccacaatcatctttaaatcaa 1069


Query: 1070 tctttacaaattccatt 1086
|||||||||||||||||
Sbjct: 1070 tctttacaaattccatt 1086


Score = 224 bits (113), Expect = 2e-58
Identities = 113/113 (100%)
Strand = Plus / Plus


Query: 1115 aagttgactacacattatatattaccacctcaaaatacaaatttaagtggaaaaaatctt 1174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1115 aagttgactacacattatatattaccacctcaaaatacaaatttaagtggaaaaaatctt 1174


Query: 1175 caaagatcatcaacatcaatgttacttaataaattaccaccaccaccatttag 1227
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1175 caaagatcatcaacatcaatgttacttaataaattaccaccaccaccatttag 1227


Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus


Query: 1 taattaattaattaacttttattatta 27
|||||||||||||||||||||||||||
Sbjct: 1 taattaattaattaacttttattatta 27


Score = 32.2 bits (16), Expect = 1.4
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 997 acaacaacaacaacaa 1012
||||||||||||||||
Sbjct: 1087 acaacaacaacaacaa 1102


>Contig-U14083-1 (Contig-U14083-1Q) /CSM_Contig/Contig-U14083-1Q.Seq.d
Length = 744

Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus


Query: 773 aatattaataacaataataatactattaat 802
||||||||||| |||||||||| |||||||
Sbjct: 233 aatattaataataataataataatattaat 262


>Contig-U13156-1 (Contig-U13156-1Q) /CSM_Contig/Contig-U13156-1Q.Seq.d
Length = 807

Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus


Query: 773 aatattaataacaataataatactattaat 802
||||| |||||||||||||||| |||||||
Sbjct: 572 aatatgaataacaataataataatattaat 601


Score = 38.2 bits (19), Expect = 0.023
Identities = 22/23 (95%)
Strand = Plus / Plus


Query: 772 caatattaataacaataataata 794
|||||||||||| ||||||||||
Sbjct: 679 caatattaataataataataata 701


Score = 30.2 bits (15), Expect = 5.6
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 780 ataacaataataata 794
|||||||||||||||
Sbjct: 657 ataacaataataata 671


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 47,173
Number of Sequences: 6905
Number of extensions: 47173
Number of successful extensions: 10758
Number of sequences better than 10.0: 1417
length of query: 1289
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1273
effective length of database: 5,564,391
effective search space: 7083469743
effective search space used: 7083469743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.23
Homology vs DNA
Query= Contig-U11356-1 (Contig-U11356-1Q) /CSM_Contig/Contig-U11356-1Q.Seq.d
(1289 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ335358) Dictyostelium discoideum cDNA clone:dda49k22, 5' ... 575 0.0 5
(BJ348756) Dictyostelium discoideum cDNA clone:dda34c10, 3' ... 682 0.0 3
(BJ333971) Dictyostelium discoideum cDNA clone:dda44m14, 5' ... 666 0.0 4
(BJ351808) Dictyostelium discoideum cDNA clone:dda44m14, 3' ... 369 0.0 5
(AU053432) Dictyostelium discoideum slug cDNA, clone SLI643. 430 0.0 3
(BJ353361) Dictyostelium discoideum cDNA clone:dda49k22, 3' ... 361 9e-98 2
(BJ402535) Dictyostelium discoideum cDNA clone:dds17c08, 3' ... 212 2e-60 2
(Y10159) D.discoideum racGAP gene. 54 4e-07 5
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 44 2e-06 10
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 40 3e-04 10
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 44 3e-04 14
(CZ902140) flea001f001l06f0 Tomato methylation filtered libr... 44 4e-04 3
(AC123513) Dictyostelium discoideum strain AX4 chromosome 2 ... 44 4e-04 8
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 42 8e-04 16
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124... 36 0.002 14
(AL929358) Plasmodium falciparum strain 3D7, chromosome 9; s... 38 0.002 12
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 32 0.003 17
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 40 0.008 9
(AC116960) Dictyostelium discoideum chromosome 2 map complem... 36 0.011 10
(CU210942) Zebrafish DNA sequence from clone CH73-128K20 in ... 54 0.014 1
(AE017263) Mesoplasma florum L1 complete genome. 34 0.014 21
(CR627496) Zebrafish DNA sequence from clone DKEY-223G10 in ... 46 0.021 6
(AC116919) Dictyostelium discoideum chromosome 2 map complem... 36 0.029 8
(AC196745) Citrus sinensis clone CSRBBa-010A22, WORKING DRAF... 42 0.032 7
(CU138503) Zebrafish DNA sequence from clone CH211-114C17. 38 0.034 2
(CR383676) Zebrafish DNA sequence from clone CH211-276I12 in... 38 0.034 2
(CU914561) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 38 0.036 2
(AE014826) Plasmodium falciparum 3D7 chromosome 14 section 1... 36 0.042 12
(AM613607) Entamoeba invadens IP1 GSS, clone inv037e10.q1k. 38 0.042 4
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 38 0.044 17
(BX005009) Zebrafish DNA sequence from clone CH211-15A18 in ... 44 0.045 6
(BX470100) Zebrafish DNA sequence from clone DKEY-239K7 in l... 38 0.048 8
(J01462) Yeast (S.cerevisiae) mitochondrial Ser-tRNA and ATP... 34 0.051 4
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-... 36 0.053 12
(CT573456) Zebrafish DNA sequence from clone CH211-190P6 in ... 52 0.053 1
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 52 0.053 1
(AY811486) Schistosoma japonicum SJCHGC03849 protein mRNA, p... 52 0.053 1
(CV750500) sjl3-007_F05_sjl3-007F05-T3_045.ab1 SJL Schistoso... 52 0.053 1
(CR812928) Zebrafish DNA sequence from clone DKEY-238M17 in ... 44 0.062 7
(ED564792) AUAC-aab89e03.b1 Ascaris suum whole genome shotgu... 50 0.065 2
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 40 0.067 13
(AL035475) Plasmodium falciparum MAL4P2. 38 0.068 12
(CR589884) Zebrafish DNA sequence from clone CH211-206L14 in... 48 0.068 5
(CU207258) Zebrafish DNA sequence from clone DKEY-15D15 in l... 44 0.069 5
(AC159429) Trypanosoma brucei chromosome 7 clone RPCI93-28B1... 46 0.071 3
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 34 0.071 11
(EY391224) CAXA915.rev CAXA Helobdella robusta Subtracted La... 36 0.076 3
(AY160103) Dictyostelium discoideum nucleotide exchange fact... 40 0.078 3
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098... 38 0.081 12
(EY384627) CAXA5250.rev CAXA Helobdella robusta Subtracted L... 36 0.086 3
(EY342926) CAWZ12195.rev CAWZ Helobdella robusta Primary Lat... 36 0.11 3
(CT737128) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 0.12 2
(AC101775) Mus musculus chromosome 19, clone RP24-116B5, com... 34 0.13 2
(AC151442) Atelerix albiventris clone LB4-211A8, WORKING DRA... 34 0.13 2
(AC151443) Atelerix albiventris clone LB4-328E3, WORKING DRA... 34 0.13 2
(BX897684) Zebrafish DNA sequence from clone CH211-107A4 in ... 38 0.13 2
(EU626441) Gossypioides kirkii clone BAC 031A10, complete se... 40 0.13 9
(EY351600) CAWZ18204.rev CAWZ Helobdella robusta Primary Lat... 36 0.13 3
(EY358330) CAWZ5739.rev CAWZ Helobdella robusta Primary Late... 36 0.13 3
(EY369368) CAXA12326.rev CAXA Helobdella robusta Subtracted ... 36 0.14 3
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 36 0.14 13
(EY363185) CAWZ8642.rev CAWZ Helobdella robusta Primary Late... 36 0.15 3
(EY380365) CAXA2836.rev CAXA Helobdella robusta Subtracted L... 36 0.15 3
(CR382378) Zebrafish DNA sequence from clone DKEYP-40G12 in ... 36 0.16 11
(AY159038) Dictyostelium discoideum LvsB (lvsB) gene, comple... 40 0.16 4
(DU862007) 70564 Tomato HindIII BAC Library Solanum lycopers... 36 0.17 3
(AJ011856) Saccharomyces cerevisiae complete mitochondrial g... 34 0.18 9
(AC116551) Dictyostelium discoideum chromosome 2 map complem... 32 0.20 11
(EY373957) CAXA14826.fwd CAXA Helobdella robusta Subtracted ... 36 0.20 3
(DJ380782) Gene Disruption Methodologies for Drug Target Dis... 38 0.21 4
(DI073115) Gene Disruption Methodologies for Drug Target Dis... 38 0.21 4
(AX488825) Sequence 6125 from Patent WO02053728. 38 0.21 4
(AX240796) Sequence 34 from Patent WO0160975. 38 0.21 4
(AR578950) Sequence 34 from patent US 6783985. 38 0.21 4
(BX005443) Zebrafish DNA sequence from clone CH211-167L23 in... 50 0.21 1
(BS000632) Pan troglodytes chromosome Y clone: PTB-399O20. 50 0.21 1
(AC146479) Pan troglodytes BAC clone CH251-424F5 from Y, com... 50 0.21 1
(AC146478) Pan troglodytes BAC clone CH251-409D17 from Y, co... 50 0.21 1
(AC004617) Homo sapiens chromosome Y, clone XX-264M20, compl... 50 0.21 1
(AC209464) Zea mays chromosome UNKNOWN clone CH201-461L22; Z... 50 0.21 1
(DW874168) MSAM057761_2512_0823 LCM-dissected maize shoot ap... 50 0.21 1
(CK136166) MM2_1_1_C01 Sugar beet 10-week GH root cDNA Beta ... 50 0.21 1
(DW261633) UI-S-GN0-abi-a-18-0-UI.s1 UI-S-GN0 Euprymna scolo... 44 0.22 2
(CU633889) Zebrafish DNA sequence from clone CH1073-89L17 in... 36 0.22 5
(DW252732) UI-S-GB1-aaf-c-19-0-UI.s1 UI-S-GB1 Euprymna scolo... 44 0.23 2
(EY384834) CAXA5366.rev CAXA Helobdella robusta Subtracted L... 34 0.24 3
(BX547934) Zebrafish DNA sequence from clone DKEY-161J23 in ... 46 0.24 7
(AE001402) Plasmodium falciparum 3D7 chromosome 2 section 39... 42 0.25 3
(CP001056) Clostridium botulinum B str. Eklund 17B, complete... 36 0.27 21
(EI449565) PV_GBa0048I20.r PV_GBa Phaseolus vulgaris genomic... 38 0.28 2
(CR627485) Zebrafish DNA sequence from clone DKEY-203E10 in ... 42 0.28 7
(AE014819) Plasmodium falciparum 3D7 chromosome 14 section 4... 34 0.29 13
(CR388057) Zebrafish DNA sequence from clone DKEYP-28G3 in l... 44 0.31 5
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734... 32 0.33 21
(AC216837) Populus trichocarpa clone POP023-C23, complete se... 36 0.34 6
(AC004709) Plasmodium falciparum chromosome 12, *** SEQUENCI... 38 0.35 9
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 36 0.35 13
(AC179763) Strongylocentrotus purpuratus clone R3-1016L20, W... 42 0.36 6
(EB207916) PEG002-C-009364-301 Normalized Pedal-Pleural Gang... 36 0.37 3
(EB246781) PEG003-C-229710-501 Normalized Pedal-Pleural Gang... 36 0.37 3

>(BJ335358) Dictyostelium discoideum cDNA clone:dda49k22, 5' end,
single read.
Length = 583

Score = 575 bits (290), Expect(5) = 0.0
Identities = 311/314 (99%)
Strand = Plus / Plus


Query: 128 atgttgatacgaccattgtaaaaattggaacaccaaagaatgttgtattattaacaaaat 187
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 atgttgatacnaccattgtaaaaattggaacaccaaagaatgttgtattattaacaaaat 186


Query: 188 ggttanatgcaaatggagcaattaaagaanaaggngtatttanagtaaatggtaatacaa 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 ggttanatgcaaatggagcaattaaagaanaaggngtatttanagtaaatggtaatacaa 246


Query: 248 caacaatggaacaaattaaaaagaattttagtcaaggaaaagatgatttaactaaataca 307
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 247 cancaatggaacaaattaaaaanaattttagtcaaggaaaagatgatttaactaaataca 306


Query: 308 cttctgctgatattcattcaatggctggttgtttaaaattcattttaaganaattaccag 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 cttctgctgatattcattcaatggctggttgtttaaaattcattttaaganaattaccag 366


Query: 368 aaccaatattcacttgggatttttatccaatatttataaaaatacaatgtttacaagatg 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 aaccaatattcacttgggatttttatccaatatttataaaaatacaatgtttacaagatg 426


Query: 428 aatcaaggaaatta 441
||||||||||||||
Sbjct: 427 aatcaaggaaatta 440

Score = 268 bits (135), Expect(5) = 0.0
Identities = 135/135 (100%)
Strand = Plus / Plus


Query: 451 aaaaatgttaattcacggtttaccatatacaagtagaacattagtatttcaattgtttgg 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 aaaaatgttaattcacggtttaccatatacaagtagaacattagtatttcaattgtttgg 508


Query: 511 atttttaagtaaattttcagtacatcaagatcaaaataaaatgactccaaaaaatttagc 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 atttttaagtaaattttcagtacatcaagatcaaaataaaatgactccaaaaaatttagc 568


Query: 571 aacagtttttgcacc 585
|||||||||||||||
Sbjct: 569 aacagtttttgcacc 583

Score = 87.7 bits (44), Expect(5) = 0.0
Identities = 47/47 (100%)
Strand = Plus / Plus


Query: 79 tggttanaaagttatttaatacatcacataaaaaagaattaatatta 125
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79 tggttanaaagttatttaatacatcacataaaaaagaattaatatta 125

Score = 34.2 bits (17), Expect(5) = 0.0
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 53 aaaattaattaatattt 69
|||||||||||||||||
Sbjct: 53 aaaattaattaatattt 69

Score = 32.2 bits (16), Expect(5) = 0.0
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 1 taattaattaattaac 16
||||||||||||||||
Sbjct: 1 taattaattaattaac 16

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,443,109,780
Number of extensions: 101851707
Number of successful extensions: 9786578
Number of sequences better than 10.0: 510
Length of query: 1289
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1265
Effective length of database: 97,308,875,965
Effective search space: 123095728095725
Effective search space used: 123095728095725
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.29
Homology vs Protein
Query= Contig-U11356-1 (Contig-U11356-1Q) /CSM_Contig/Contig-U11356-1Q.Seq.d
(1289 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

T18289(T18289) racGAP protein - slime mold (Dictyostelium discoi... 96 8e-28
(Q17R89) RecName: Full=Rho GTPase-activating protein RICH2; AltN... 52 1e-10
AK294538_1(AK294538|pid:none) Homo sapiens cDNA FLJ58097 complet... 52 1e-10
BC155472_1(BC155472|pid:none) Xenopus tropicalis hypothetical pr... 47 3e-09
AK027567_1(AK027567|pid:none) Homo sapiens cDNA FLJ14661 fis, cl... 52 5e-09
AY364241_1(AY364241|pid:none) Homo sapiens clone peg2155 SH3 dom... 53 6e-09
BC142556_1(BC142556|pid:none) Xenopus laevis hypothetical protei... 49 6e-09
(Q9Y3L3) RecName: Full=SH3 domain-binding protein 1; Sh... 53 8e-09
BC008282_1(BC008282|pid:none) Homo sapiens SH3-domain binding pr... 53 8e-09
AK126873_1(AK126873|pid:none) Homo sapiens cDNA FLJ44925 fis, cl... 53 8e-09
AX961970_1(AX961970|pid:none) Sequence 181 from Patent WO03104277. 53 8e-09
AK124370_1(AK124370|pid:none) Homo sapiens cDNA FLJ42379 fis, cl... 53 8e-09
(Q9BVF6) RecName: Full=Rho GTPase-activating protein 17; AltName... 52 1e-08
AJ306731_1(AJ306731|pid:none) Homo sapiens mRNA for RhoGAP prote... 52 1e-08
(Q99N37) RecName: Full=Rho GTPase-activating protein 17; AltName... 52 2e-08
AB060553_1(AB060553|pid:none) Mus musculus mRNA for Nadrin1, com... 52 2e-08
AB042827_1(AB042827|pid:none) Rattus norvegicus mRNA for Nadrin,... 52 2e-08
AB060554_1(AB060554|pid:none) Mus musculus mRNA for Nadrin2, com... 52 2e-08
AB080637_1(AB080637|pid:none) Rattus norvegicus mRNA for Nadrin-... 52 2e-08
BC003259_1(BC003259|pid:none) Mus musculus Rho GTPase activating... 52 2e-08
DQ481668_4(DQ481668|pid:none) Takifugu rubripes HoxDa gene clust... 59 3e-08
AL596088_3(AL596088|pid:none) Mouse DNA sequence from clone RP23... 45 4e-08
BC156106_1(BC156106|pid:none) Synthetic construct Mus musculus c... 45 4e-08
CR790375_4(CR790375|pid:none) Zebrafish DNA sequence from clone ... 47 4e-08
AK173187_1(AK173187|pid:none) Mus musculus mRNA for mKIAA1501 pr... 45 4e-08
AL691489_9(AL691489|pid:none) Mouse DNA sequence from clone RP23... 44 4e-08
AK046291_1(AK046291|pid:none) Mus musculus adult male corpora qu... 44 4e-08
AK298562_1(AK298562|pid:none) Homo sapiens cDNA FLJ60782 complet... 44 4e-08
AY891643_1(AY891643|pid:none) Synthetic construct Homo sapiens c... 44 4e-08
(Q5FWK3) RecName: Full=Rho GTPase-activating protein 1; AltName:... 44 4e-08
AK084622_1(AK084622|pid:none) Mus musculus 13 days embryo heart ... 44 4e-08
(Q07960) RecName: Full=Rho GTPase-activating protein 1; AltName:... 44 4e-08
AK079048_1(AK079048|pid:none) Mus musculus adult male diencephal... 44 4e-08
AK171304_1(AK171304|pid:none) Mus musculus NOD-derived CD11c +ve... 48 5e-08
AK159194_1(AK159194|pid:none) Mus musculus osteoclast-like cell ... 48 5e-08
(Q3TBD2) RecName: Full=Minor histocompatibility protein HA-1; 48 5e-08
AK170262_1(AK170262|pid:none) Mus musculus NOD-derived CD11c +ve... 48 5e-08
AK044860_1(AK044860|pid:none) Mus musculus 9.5 days embryo parth... 48 5e-08
CR457482_4(CR457482|pid:none) Zebrafish DNA sequence from clone ... 48 5e-08
AK134029_1(AK134029|pid:none) Mus musculus adult male thymus cDN... 48 5e-08
(Q9P227) RecName: Full=Rho GTPase-activating protein 23; AltName... 44 6e-08
BC159092_1(BC159092|pid:none) Xenopus tropicalis histocompatibil... 44 7e-08
A59434(A59434;B59434) KIAA1501 protein [imported] - human &AB04... 44 7e-08
AL592169_3(AL592169|pid:none) Mouse DNA sequence from clone RP23... 50 7e-08
BC004598_1(BC004598|pid:none) Mus musculus SH3-domain binding pr... 50 7e-08
AL592169_2(AL592169|pid:none) Mouse DNA sequence from clone RP23... 50 7e-08
AL592169_1(AL592169|pid:none) Mouse DNA sequence from clone RP23... 50 7e-08
(Q6PAJ1) RecName: Full=Breakpoint cluster region protein; ... 54 1e-07
AK129482_1(AK129482|pid:none) Mus musculus mRNA for mKIAA3017 pr... 54 1e-07
BC048842_1(BC048842|pid:none) Mus musculus breakpoint cluster re... 54 1e-07
BC002193_1(BC002193|pid:none) Mus musculus breakpoint cluster re... 54 1e-07
Y00661_1(Y00661|pid:none) Human bcr mRNA (break point cluster ge... 54 1e-07
(Q6DE55) RecName: Full=Minor histocompatibility protein HA-1; &... 44 1e-07
(A6QNS3) RecName: Full=Active breakpoint cluster region-related ... 53 1e-07
B47485(B47485)ABR protein 2 - human 53 1e-07
AL591143_2(AL591143|pid:none) Mouse DNA sequence from clone RP23... 53 2e-07
(Q12979) RecName: Full=Active breakpoint cluster region-related ... 53 2e-07
AB384846_1(AB384846|pid:none) Synthetic construct DNA, clone: pF... 53 2e-07
AL591143_4(AL591143|pid:none) Mouse DNA sequence from clone RP23... 53 2e-07
AK134993_1(AK134993|pid:none) Mus musculus adult male olfactory ... 53 2e-07
AK299909_1(AK299909|pid:none) Homo sapiens cDNA FLJ54747 complet... 53 2e-07
BT072468_1(BT072468|pid:none) Salmo salar clone ssal-rgf-526-265... 44 2e-07
(Q8IXX1) RecName: Full=Rho GTPase-activating protein 15; AltName... 48 2e-07
(Q8BL80) RecName: Full=Rho GTPase-activating protein 22; AltName... 42 3e-07
AK046097_1(AK046097|pid:none) Mus musculus adult male corpora qu... 42 3e-07
CR394528_1(CR394528|pid:none) Zebrafish DNA sequence from clone ... 52 3e-07
(O43295) RecName: Full=SLIT-ROBO Rho GTPase-activating protein 3... 43 4e-07
AX056907_1(AX056907|pid:none) Sequence 47 from Patent WO0075320.... 43 4e-07
AB384477_1(AB384477|pid:none) Synthetic construct DNA, clone: pF... 43 4e-07
AB007871_1(AB007871|pid:none) Homo sapiens KIAA0411 mRNA, partia... 43 4e-07
I38100(I38100) rho-GTPase-activating protein 4 - human &X78817_... 47 4e-07
(Q812A2) RecName: Full=SLIT-ROBO Rho GTPase-activating protein 3... 43 5e-07
BC167605_1(BC167605|pid:none) Xenopus tropicalis hypothetical pr... 41 5e-07
AK302682_1(AK302682|pid:none) Homo sapiens cDNA FLJ60982 complet... 53 5e-07
AK122276_1(AK122276|pid:none) Mus musculus mRNA for mKIAA0411 pr... 43 5e-07
CU633438_916(CU633438|pid:none) Podospora anserina genomic DNA c... 46 7e-07
D59433(D59433;E59433) C. elegans protein Z37093 homolog [importe... 46 7e-07
AK300341_1(AK300341|pid:none) Homo sapiens cDNA FLJ58624 complet... 46 7e-07
BC065223_1(BC065223|pid:none) Homo sapiens histocompatibility (m... 46 7e-07
BC035564_1(BC035564|pid:none) Homo sapiens histocompatibility (m... 46 7e-07
BC048129_1(BC048129|pid:none) Homo sapiens histocompatibility (m... 46 7e-07
BC151274_1(BC151274|pid:none) Bos taurus Rho GTPase activating p... 46 9e-07
BX927072_1(BX927072|pid:none) Zebrafish DNA sequence from clone ... 44 9e-07
(Q6ZUM4) RecName: Full=Rho GTPase-activating protein 27; AltName... 47 9e-07
AK125535_1(AK125535|pid:none) Homo sapiens cDNA FLJ43547 fis, cl... 47 9e-07
BC101391_1(BC101391|pid:none) Homo sapiens Rho GTPase activating... 47 9e-07
EU752496_1(EU752496|pid:none) Caenorhabditis elegans PAR-6-at-co... 47 1e-06
U02289_1(U02289|pid:none) Caenorhabditis elegans Bristol N2 GTPa... 47 1e-06
L16687_1(L16687|pid:none) Caenorhabditis elegans cosmid C04D8, c... 47 1e-06
L16687_2(L16687|pid:none) Caenorhabditis elegans cosmid C04D8, c... 47 1e-06
BC066588_1(BC066588|pid:none) Danio rerio zgc:77004, mRNA (cDNA ... 44 1e-06
AL773540_3(AL773540|pid:none) Mouse DNA sequence from clone RP23... 41 1e-06
(Q5T5U3) RecName: Full=Rho GTPase-activating protein 21; AltName... 41 1e-06
BC150741_1(BC150741|pid:none) Mus musculus Rho GTPase activating... 41 1e-06
A59438(A59438;B59438) KIAA1424 protein [imported] - human &AB03... 41 1e-06
AL773540_2(AL773540|pid:none) Mouse DNA sequence from clone RP23... 41 1e-06
(Q6DFV3) RecName: Full=Rho GTPase-activating protein 21; AltName... 41 1e-06
BC118915_1(BC118915|pid:none) Homo sapiens Rho GTPase activating... 41 1e-06
AK122508_1(AK122508|pid:none) Mus musculus premature mRNA for mK... 41 1e-06
AK295649_1(AK295649|pid:none) Homo sapiens cDNA FLJ54686 complet... 41 1e-06
AM392626_1(AM392626|pid:none) Synthetic construct Homo sapiens c... 45 1e-06
Z68128_1(Z68128|pid:none) H.sapiens C1 gene. 45 1e-06
D50921_1(D50921|pid:none) Homo sapiens mRNA for KIAA0131 gene, p... 45 1e-06
(Q6AYC5) RecName: Full=Rho GTPase-activating protein 15; AltName... 46 2e-06
AY219338_1(AY219338|pid:none) Homo sapiens ARHGAP15 mRNA, comple... 45 2e-06
CR859935_1(CR859935|pid:none) Pongo abelii mRNA; cDNA DKFZp469J0... 45 3e-06
FN357397_8(FN357397|pid:none) Schistosoma mansoni genome sequenc... 39 3e-06
(Q9VTU3) RecName: Full=Rho GTPase-activating protein 68F; &AE01... 45 3e-06
AB007925_1(AB007925|pid:none) Homo sapiens mRNA for KIAA0456 pro... 42 4e-06
BC132872_1(BC132872|pid:none) Homo sapiens SLIT-ROBO Rho GTPase ... 42 4e-06
(O75044) RecName: Full=SLIT-ROBO Rho GTPase-activating protein 2... 42 4e-06
BC144343_1(BC144343|pid:none) Homo sapiens SLIT-ROBO Rho GTPase ... 42 4e-06
AK129060_1(AK129060|pid:none) Mus musculus premature mRNA for mK... 46 4e-06
AL672002_4(AL672002|pid:none) Mouse DNA sequence from clone RP23... 46 4e-06
FN392319_159(FN392319|pid:none) Pichia pastoris GS115 chromosome... 49 4e-06
AK169865_1(AK169865|pid:none) Mus musculus NOD-derived CD11c +ve... 46 4e-06
AK293335_1(AK293335|pid:none) Homo sapiens cDNA FLJ61210 complet... 42 4e-06
BC076733_1(BC076733|pid:none) Xenopus laevis Rho GTPase activati... 38 4e-06
BX005226_1(BX005226|pid:none) Zebrafish DNA sequence from clone ... 38 5e-06
(A2AB59) RecName: Full=Rho GTPase-activating protein 27; AltName... 44 5e-06
AK046763_1(AK046763|pid:none) Mus musculus 4 days neonate thymus... 44 5e-06
BC047837_1(BC047837|pid:none) Danio rerio chimerin (chimaerin) 1... 55 5e-06
AY684586_1(AY684586|pid:none) Danio rerio chimaerin mRNA, comple... 55 5e-06
BC083540_1(BC083540|pid:none) Danio rerio chimerin (chimaerin) 1... 55 5e-06
AK143916_1(AK143916|pid:none) Mus musculus adult male kidney cDN... 44 5e-06
BC081352_1(BC081352|pid:none) Xenopus tropicalis Rho GTPase acti... 39 6e-06
AL845168_4(AL845168|pid:none) Zebrafish DNA sequence from clone ... 48 7e-06
(P46941) RecName: Full=WW domain-containing protein tag-325; &T... 40 7e-06
AK293579_1(AK293579|pid:none) Homo sapiens cDNA FLJ56006 complet... 41 9e-06
(Q7Z5H3) RecName: Full=Rho GTPase-activating protein 22; AltName... 41 9e-06
BC151437_1(BC151437|pid:none) Bos taurus Rho GTPase activating p... 43 9e-06
AB385228_1(AB385228|pid:none) Synthetic construct DNA, clone: pF... 41 9e-06
AK127586_1(AK127586|pid:none) Homo sapiens cDNA FLJ45681 fis, cl... 41 9e-06
AK055037_1(AK055037|pid:none) Homo sapiens cDNA FLJ30475 fis, cl... 41 9e-06
T20802(T20802) hypothetical protein F12F6.5 - Caenorhabditis ele... 40 1e-05
BC168690_1(BC168690|pid:none) Rattus norvegicus SLIT-ROBO Rho GT... 42 1e-05
AK077063_1(AK077063|pid:none) Mus musculus adult male testis cDN... 45 1e-05
BC044312_1(BC044312|pid:none) Xenopus laevis hypothetical protei... 37 1e-05
(Q17QN0) RecName: Full=N-chimaerin; AltName: Full=N-chimerin; ... 54 1e-05
CR382132_1313(CR382132|pid:none) Yarrowia lipolytica strain CLIB... 46 1e-05
CR382132_1328(CR382132|pid:none) Yarrowia lipolytica chromosome ... 46 1e-05
AP007164_330(AP007164|pid:none) Aspergillus oryzae RIB40 genomic... 37 2e-05
BC152935_1(BC152935|pid:none) Synthetic construct Mus musculus c... 42 2e-05
(Q8C0D4) RecName: Full=Rho GTPase-activating protein 12; AltName... 45 2e-05
AK031648_1(AK031648|pid:none) Mus musculus 13 days embryo male t... 45 2e-05
BC141184_1(BC141184|pid:none) Mus musculus Rho GTPase activating... 45 2e-05
(Q5U2Z7) RecName: Full=Rho GTPase-activating protein 24; AltName... 41 2e-05
BC085797_1(BC085797|pid:none) Rattus norvegicus Rho GTPase activ... 41 2e-05
BC024633_1(BC024633|pid:none) Mus musculus Rho GTPase activating... 45 2e-05
AK039617_1(AK039617|pid:none) Mus musculus adult male spinal cor... 41 2e-05
AB171295_1(AB171295|pid:none) Macaca fascicularis brain cDNA clo... 53 2e-05
BC046844_1(BC046844|pid:none) Xenopus laevis Rho GTPase activati... 44 3e-05
(Q8N264) RecName: Full=Rho GTPase-activating protein 24; AltName... 41 3e-05
AK091196_1(AK091196|pid:none) Homo sapiens cDNA FLJ33877 fis, cl... 41 3e-05
BC098580_1(BC098580|pid:none) Homo sapiens Rho GTPase activating... 41 3e-05
AK098193_1(AK098193|pid:none) Homo sapiens cDNA FLJ40874 fis, cl... 41 3e-05
AL031263_3(AL031263|pid:none) S.pombe chromosome II cosmid c17F3. 37 3e-05
AE014135_54(AE014135|pid:none) Drosophila melanogaster chromosom... 38 3e-05
(Q8IWW6) RecName: Full=Rho GTPase-activating protein 12; AltName... 44 3e-05
BC115362_1(BC115362|pid:none) Homo sapiens Rho GTPase activating... 44 3e-05
AB385211_1(AB385211|pid:none) Synthetic construct DNA, clone: pF... 44 3e-05
BT026166_1(BT026166|pid:none) Bos taurus Rho GTPase activating p... 41 3e-05
AL137485_1(AL137485|pid:none) Homo sapiens mRNA; cDNA DKFZp434L0... 44 3e-05
BC051811_1(BC051811|pid:none) Homo sapiens Rho GTPase activating... 44 3e-05
AC115604_14(AC115604|pid:none) Dictyostelium discoideum chromoso... 42 4e-05
AE014298_2(AE014298|pid:none) Drosophila melanogaster chromosome... 46 4e-05
AK129034_1(AK129034|pid:none) Mus musculus mRNA for mKIAA0013 pr... 40 4e-05
X90950_1(X90950|pid:none) S.cerevisiae rga1 (dbm1) gene. 44 4e-05
(Q80Y19) RecName: Full=Rho GTPase-activating protein 11A; AltNam... 40 4e-05
(Q9BE31) RecName: Full=Rho GTPase-activating protein 12; AltName... 44 4e-05
AL772405_5(AL772405|pid:none) Mouse DNA sequence from clone RP23... 40 4e-05
AL772405_4(AL772405|pid:none) Mouse DNA sequence from clone RP23... 40 4e-05
AC117075_47(AC117075|pid:none) Dictyostelium discoideum chromoso... 48 5e-05
AM270251_33(AM270251|pid:none) Aspergillus niger contig An11c034... 43 6e-05
CU928180_310(CU928180|pid:none) Kluyveromyces thermotolerans str... 44 7e-05
(Q6PCS4) RecName: Full=Rho GTPase-activating protein 29; AltName... 43 7e-05
BC149489_1(BC149489|pid:none) Bos taurus Rho GTPase activating p... 43 7e-05
AL031884_3(AL031884|pid:none) Drosophila melanogaster cosmid clo... 45 7e-05
AL355192_1(AL355192|pid:none) Novel human gene mapping to chomos... 43 7e-05
AF195968_1(AF195968|pid:none) Homo sapiens rho GTPase activating... 43 7e-05
BC048280_1(BC048280|pid:none) Homo sapiens Rho GTPase activating... 43 7e-05
BC010490_1(BC010490|pid:none) Homo sapiens Rho GTPase activating... 43 7e-05
AY320403_1(AY320403|pid:none) Homo sapiens nasopharyngeal carcin... 51 8e-05
CR450809_2(CR450809|pid:none) Zebrafish DNA sequence from clone ... 43 9e-05
BC167520_1(BC167520|pid:none) Xenopus tropicalis hypothetical pr... 42 9e-05
BX537291_1(BX537291|pid:none) Zebrafish DNA sequence from clone ... 37 9e-05
BX936460_1(BX936460|pid:none) Zebrafish DNA sequence from clone ... 51 1e-04
AK049943_1(AK049943|pid:none) Mus musculus adult male hippocampu... 51 1e-04
BC054770_1(BC054770|pid:none) Mus musculus chimerin (chimaerin) ... 51 1e-04
AF332069_1(AF332069|pid:none) Mus musculus strain ISS n-chimaeri... 51 1e-04
BC079089_1(BC079089|pid:none) Rattus norvegicus Rho GTPase activ... 38 2e-04
(P30337) RecName: Full=N-chimaerin; AltName: Full=N-chimerin; ... 50 2e-04
S29128(S29128;S25152) N-chimerin - rat &X67250_1(X67250|pid:none) 50 2e-04
BX470224_4(BX470224|pid:none) Zebrafish DNA sequence from clone ... 45 2e-04
AF251038_1(AF251038|pid:none) Homo sapiens GAP-like protein (N61... 50 2e-04
BC161070_1(BC161070|pid:none) Xenopus tropicalis chimerin (chima... 50 2e-04
EU832118_1(EU832118|pid:none) Synthetic construct Homo sapiens c... 49 3e-04
(Q9NYF5) RecName: Full=Protein FAM13B; AltName: Full=GAP-like pr... 49 3e-04
AK314224_1(AK314224|pid:none) Homo sapiens cDNA, FLJ94962. 49 3e-04
(Q8K2H3) RecName: Full=Protein FAM13B; &BC031465_1(BC031465|pid... 49 3e-04
CR382125_33(CR382125|pid:none) Kluyveromyces lactis strain NRRL ... 40 3e-04
AE017350_249(AE017350|pid:none) Cryptococcus neoformans var. neo... 43 3e-04
AP007167_104(AP007167|pid:none) Aspergillus oryzae RIB40 genomic... 41 3e-04
BT071954_1(BT071954|pid:none) Salmo salar clone ssal-rgf-505-003... 42 4e-04
AJ719917_1(AJ719917|pid:none) Gallus gallus mRNA for hypothetica... 49 4e-04
BC105510_1(BC105510|pid:none) Bos taurus Rho GTPase activating p... 44 4e-04
AL392104_8(AL392104|pid:none) Human DNA sequence from clone RP11... 36 5e-04
CP001575_325(CP001575|pid:none) Micromonas sp. RCC299 chromosome... 49 5e-04
(Q6DFG0) RecName: Full=Rho GTPase-activating protein 21-A; AltNa... 38 5e-04
BC170466_1(BC170466|pid:none) Xenopus laevis Rho GTPase activati... 38 5e-04
AM920437_2509(AM920437|pid:none) Penicillium chrysogenum Wiscons... 34 6e-04
AK137444_1(AK137444|pid:none) Mus musculus adult male bone cDNA,... 44 6e-04
AK037710_1(AK037710|pid:none) Mus musculus 16 days neonate thymu... 44 6e-04
AK172878_1(AK172878|pid:none) Mus musculus mRNA for mKIAA0053 pr... 44 6e-04
BC108400_1(BC108400|pid:none) Mus musculus Rho GTPase activating... 44 6e-04
AK169897_1(AK169897|pid:none) Mus musculus NOD-derived CD11c +ve... 44 6e-04
FN357440_27(FN357440|pid:none) Schistosoma mansoni genome sequen... 35 6e-04
FN392319_1213(FN392319|pid:none) Pichia pastoris GS115 chromosom... 34 7e-04
AJ720581_1(AJ720581|pid:none) Gallus gallus mRNA for hypothetica... 44 7e-04
AC024755_8(AC024755|pid:none) Caenorhabditis elegans cosmid Y34B... 42 7e-04
AM486700_1(AM486700|pid:none) Vitis vinifera contig VV78X005359.... 37 7e-04
AF064787_1(AF064787|pid:none) Lotus japonicus rac GTPase activat... 38 7e-04
AK001833_1(AK001833|pid:none) Homo sapiens cDNA FLJ10971 fis, cl... 40 8e-04
BC016701_1(BC016701|pid:none) Homo sapiens Rho GTPase activating... 48 9e-04
(Q5ZMM3) RecName: Full=Rho GTPase-activating protein 15; AltName... 48 9e-04
D29642_1(D29642|pid:none) Homo sapiens KIAA0053 mRNA, partial cds. 43 0.001
AK290396_1(AK290396|pid:none) Homo sapiens cDNA FLJ78435 complet... 43 0.001
AB383728_1(AB383728|pid:none) Synthetic construct DNA, clone: pF... 43 0.001
AK297056_1(AK297056|pid:none) Homo sapiens cDNA FLJ51694 complet... 43 0.001
AK298669_1(AK298669|pid:none) Homo sapiens cDNA FLJ61332 complet... 43 0.001
AC097495_2(AC097495|pid:none) Homo sapiens BAC clone RP11-304A15... 43 0.001
CR749412_1(CR749412|pid:none) Homo sapiens mRNA; cDNA DKFZp313K2... 34 0.001
BC109001_1(BC109001|pid:none) Mus musculus Rho GTPase activating... 37 0.001
AJ851459_1(AJ851459|pid:none) Gallus gallus mRNA for hypothetica... 47 0.001
BC133722_1(BC133722|pid:none) Xenopus tropicalis sorting nexin 2... 37 0.002
FM992691_175(FM992691|pid:none) Candida dubliniensis CD36 chromo... 38 0.002
CR380957_440(CR380957|pid:none) Candida glabrata strain CBS138 c... 39 0.002
FN359241_1(FN359241|pid:none) Schistosoma mansoni genome sequenc... 37 0.002
BC006107_1(BC006107|pid:none) Homo sapiens Rho GTPase activating... 34 0.002
AB030239_1(AB030239|pid:none) Homo sapiens mRNA for RGL1, comple... 34 0.002
AK057573_1(AK057573|pid:none) Homo sapiens cDNA FLJ33011 fis, cl... 34 0.002
AL713803_1(AL713803|pid:none) Homo sapiens mRNA; cDNA DKFZp667F1... 34 0.002
AK304271_1(AK304271|pid:none) Homo sapiens cDNA FLJ61711 complet... 46 0.003
AL732320_3(AL732320|pid:none) Mouse DNA sequence from clone RP23... 46 0.003
AK132965_1(AK132965|pid:none) Mus musculus adult male testis cDN... 36 0.003
CR774186_4(CR774186|pid:none) Zebrafish DNA sequence from clone ... 41 0.003
(Q9Z1N3) RecName: Full=Myosin-IXa; AltName: Full=Unconventional ... 39 0.003
(Q9V9S7) RecName: Full=Rho GTPase-activating protein 100F; ... 35 0.003
AJ133373_1(AJ133373|pid:none) Zygosaccharomyces rouxii rga1 gene... 46 0.003
(O74360) RecName: Full=Probable Rho-type GTPase-activating prote... 33 0.003
T40040(T40040)GTPase-activator protein for Rho-like GTPases - fi... 33 0.003
(Q9NUY2) RecName: Full=Myosin-IXa; AltName: Full=Unconventional ... 39 0.004
AF117888_1(AF117888|pid:none) Homo sapiens myosin-IXa mRNA, comp... 39 0.004
AB290183_1(AB290183|pid:none) Homo sapiens mRNA for MYO9A varian... 39 0.004
CU928174_466(CU928174|pid:none) Zygosaccharomyces rouxii strain ... 38 0.004
AK029836_1(AK029836|pid:none) Mus musculus adult male testis cDN... 39 0.004
AK001923_1(AK001923|pid:none) Homo sapiens cDNA FLJ11061 fis, cl... 39 0.004
(P83509) RecName: Full=Glucocorticoid receptor DNA-binding facto... 45 0.006
BC076756_1(BC076756|pid:none) Xenopus laevis hypothetical protei... 45 0.006
CR380955_276(CR380955|pid:none) Candida glabrata strain CBS138 c... 41 0.007
FN392320_1232(FN392320|pid:none) Pichia pastoris GS115 chromosom... 40 0.007
CR382136_894(CR382136|pid:none) Debaryomyces hansenii chromosome... 35 0.007
BT029131_1(BT029131|pid:none) Drosophila melanogaster IP16137 fu... 33 0.007
AE013599_2672(AE013599|pid:none) Drosophila melanogaster chromos... 33 0.007
AK298356_1(AK298356|pid:none) Homo sapiens cDNA FLJ56603 complet... 45 0.007
(Q9NRY4) RecName: Full=Glucocorticoid receptor DNA-binding facto... 45 0.007
BC134232_1(BC134232|pid:none) Danio rerio histocompatibility (mi... 45 0.007
BC046676_1(BC046676|pid:none) Xenopus laevis similar to Rac GTPa... 45 0.007
DQ813657_1(DQ813657|pid:none) Nicotiana tabacum RhoGAP1 mRNA, co... 37 0.007
AE013599_2673(AE013599|pid:none) Drosophila melanogaster chromos... 33 0.008
FM992688_563(FM992688|pid:none) Candida dubliniensis CD36 chromo... 33 0.009
BC035541_1(BC035541|pid:none) Mus musculus glucocorticoid recept... 44 0.010
(Q91YM2) RecName: Full=Glucocorticoid receptor DNA-binding facto... 44 0.010
AJ888904_1(AJ888904|pid:none) Rattus norvegicus mRNA for myosin ... 33 0.012
AJ888905_1(AJ888905|pid:none) Rattus norvegicus mRNA for myosin ... 33 0.012
(Q63358) RecName: Full=Myosin-IXb; AltName: Full=Unconventional ... 33 0.012
AF143683_1(AF143683|pid:none) Mus musculus C57Bl/6 8 unconventio... 33 0.012
AF029913_1(AF029913|pid:none) Cochliobolus heterostrophus GTPase... 42 0.012
AF027687_1(AF027687|pid:none) Cochliobolus heterostrophus GTPase... 42 0.012
DQ498128_1(DQ498128|pid:none) Mus musculus ArhGAP9 (Arhgap9) mRN... 32 0.012
AK089051_1(AK089051|pid:none) Mus musculus 2 days neonate thymus... 32 0.013
FM992691_206(FM992691|pid:none) Candida dubliniensis CD36 chromo... 44 0.013
CR382139_806(CR382139|pid:none) Debaryomyces hansenii strain CBS... 44 0.013
AF067217_2(AF067217|pid:none) Caenorhabditis elegans cosmid F56A... 34 0.015
T33079(T33079)hypothetical protein F56A6.2 - Caenorhabditis eleg... 34 0.015
AK005660_1(AK005660|pid:none) Mus musculus adult male testis cDN... 33 0.021
AC006232_12(AC006232|pid:none) Arabidopsis thaliana chromosome 2... 36 0.021
AF159851_1(AF159851|pid:none) Homo sapiens Rho GAP p190-A mRNA, ... 43 0.021
AK303591_1(AK303591|pid:none) Homo sapiens cDNA FLJ59112 complet... 43 0.021
AB290184_1(AB290184|pid:none) Homo sapiens mRNA for MYO9B varian... 33 0.025
(Q13459) RecName: Full=Myosin-IXb; AltName: Full=Unconventional ... 33 0.025
AB209997_1(AB209997|pid:none) Homo sapiens mRNA for MYO9B varian... 33 0.025
A59256(A59256;I61700) myosin-IXb [similarity] - human &U42391_1... 33 0.025
BC077906_1(BC077906|pid:none) Xenopus laevis MGC80781 protein, m... 40 0.026
CR382125_108(CR382125|pid:none) Kluyveromyces lactis strain NRRL... 37 0.026
BC018108_1(BC018108|pid:none) Homo sapiens myosin IXB, mRNA (cDN... 33 0.027
AK117311_1(AK117311|pid:none) Arabidopsis thaliana At2g46710 mRN... 33 0.027
AC008153_15(AC008153|pid:none) Arabidopsis thaliana chromosome 3... 34 0.027
T22329(T22329)hypothetical protein F47A4.3 - Caenorhabditis eleg... 43 0.028
(P35688) RecName: Full=Rho-GTPase-activating protein LRG1; AltNa... 43 0.028
Z49888_5(Z49888|pid:none) Caenorhabditis elegans Cosmid F47A4, c... 43 0.028
AL672002_9(AL672002|pid:none) Mouse DNA sequence from clone RP23... 43 0.028
(Q6GPD0) RecName: Full=Rho/Cdc42/Rac GTPase-activating protein R... 38 0.032
AE017346_285(AE017346|pid:none) Cryptococcus neoformans var. neo... 37 0.033
AK133927_1(AK133927|pid:none) Mus musculus 8 days embryo whole b... 35 0.033
(Q8K031) RecName: Full=StAR-related lipid transfer protein 8; Al... 35 0.033
BC140763_1(BC140763|pid:none) Homo sapiens oligophrenin 1, mRNA ... 32 0.034
(O60890) RecName: Full=Oligophrenin-1; &AB102656_1(AB102656|pid... 32 0.034
Z83838_5(Z83838|pid:none) Human DNA sequence from clone RP1-127B... 42 0.036
AK082551_1(AK082551|pid:none) Mus musculus 0 day neonate cerebel... 32 0.044
AF143684_1(AF143684|pid:none) Homo sapiens unconventional myosin... 32 0.046
CR382135_362(CR382135|pid:none) Debaryomyces hansenii strain CBS... 42 0.048
(P39960) RecName: Full=GTPase-activating protein BEM2/IPL2; AltN... 35 0.054
CR749411_1(CR749411|pid:none) Homo sapiens mRNA; cDNA DKFZp686H1... 34 0.056
(Q92502) RecName: Full=StAR-related lipid transfer protein 8; Al... 34 0.056
(O94466) RecName: Full=Probable Rho-GTPase-activating protein 7;... 33 0.057
CR942374_1(CR942374|pid:none) Xenopus tropicalis finished cDNA, ... 37 0.057
AK124310_1(AK124310|pid:none) Homo sapiens cDNA FLJ42318 fis, cl... 42 0.062
FN392320_122(FN392320|pid:none) Pichia pastoris GS115 chromosome... 42 0.062
AE014298_787(AE014298|pid:none) Drosophila melanogaster chromoso... 42 0.062
BC027830_1(BC027830|pid:none) Mus musculus StAR-related lipid tr... 32 0.072
BX649606_14(BX649606|pid:none) Aspergillus fumigatus BAC pilot p... 35 0.072
BC151396_1(BC151396|pid:none) Bos taurus StAR-related lipid tran... 33 0.072
AY190934_7(AY190934|pid:none) Drosophila erecta clone DERF01_13_... 35 0.073
(Q06407) RecName: Full=Rho-type GTPase-activating protein 2; &S... 41 0.081
BC047918_1(BC047918|pid:none) Homo sapiens Rho GTPase activating... 41 0.081
BC068777_1(BC068777|pid:none) Xenopus laevis hypothetical protei... 41 0.081
(Q9VDS5) RecName: Full=Rho GTPase-activating protein 92B; &AE01... 35 0.094
BC059382_1(BC059382|pid:none) Homo sapiens Rho GTPase activating... 41 0.11
AY814356_1(AY814356|pid:none) Schistosoma japonicum SJCHGC03764 ... 41 0.11
AK022305_1(AK022305|pid:none) Homo sapiens cDNA FLJ12243 fis, cl... 41 0.11
AL392104_9(AL392104|pid:none) Human DNA sequence from clone RP11... 41 0.11
AK142180_1(AK142180|pid:none) Mus musculus 13 days embryo heart ... 37 0.12
(Q80YF9) RecName: Full=TC10/CDC42 GTPase-activating protein; Alt... 37 0.12
(O14559) RecName: Full=TC10/CDC42 GTPase-activating protein; Alt... 37 0.12
AY366448_1(AY366448|pid:none) Homo sapiens chromosome 13 Rho GTP... 32 0.12
(Q86XT1) RecName: Full=StAR-related lipid transfer protein 13; A... 32 0.12
AL139187_1(AL139187|pid:none) Human DNA sequence from clone RP11... 32 0.12
BX647695_1(BX647695|pid:none) Homo sapiens mRNA; cDNA DKFZp686I0... 32 0.12
BC128586_1(BC128586|pid:none) Homo sapiens sorting nexin 26, mRN... 37 0.12
AK138417_1(AK138417|pid:none) Mus musculus adult male hypothalam... 40 0.14
(A6X8Z5) RecName: Full=Cdc42 GTPase-activating protein; &BC1388... 40 0.14
AF151363_1(AF151363|pid:none) Mus musculus Cdc42 GTPase-activati... 40 0.14
AK155729_1(AK155729|pid:none) Mus musculus B6-derived CD11 +ve d... 40 0.14
AC002398_4(AC002398|pid:none) Human DNA from chromosome 19-speci... 36 0.16
AK095114_1(AK095114|pid:none) Homo sapiens cDNA FLJ37795 fis, cl... 32 0.16
AC005275_2(AC005275|pid:none) Arabidopsis thaliana BAC F4C21 fro... 33 0.16
AL935065_9(AL935065|pid:none) Zebrafish DNA sequence from clone ... 40 0.18
AB030251_1(AB030251|pid:none) Homo sapiens MgcRacGAP mRNA for GT... 40 0.24
AK000733_1(AK000733|pid:none) Homo sapiens cDNA FLJ20726 fis, cl... 40 0.24
BT069646_1(BT069646|pid:none) Zea mays full-length cDNA clone ZM... 40 0.24
CU928180_9(CU928180|pid:none) Kluyveromyces thermotolerans strai... 40 0.24
AK315785_1(AK315785|pid:none) Homo sapiens cDNA, FLJ96901, highl... 40 0.24
(Q9H0H5) RecName: Full=Rac GTPase-activating protein 1; AltName:... 40 0.24
(O43052) RecName: Full=Rho-type GTPase-activating protein 1; &A... 39 0.31
AL096728_1(AL096728|pid:none) Homo sapiens mRNA; cDNA DKFZp434B0... 39 0.31
AX972978_1(AX972978|pid:none) Sequence 3781 from Patent EP1104808. 32 0.33
AY190943_6(AY190943|pid:none) Drosophila virilis clone DVIF01_25... 33 0.34
AF064789_1(AF064789|pid:none) Lotus japonicus rac GTPase activat... 33 0.35
BC000277_1(BC000277|pid:none) Homo sapiens Rho GTPase-activating... 39 0.40
AB079856_1(AB079856|pid:none) Homo sapiens grit mRNA for Rho GTP... 39 0.40
CR380949_230(CR380949|pid:none) Candida glabrata strain CBS138 c... 39 0.40
(Q2M1Z3) RecName: Full=Cdc42 GTPase-activating protein; &AB3845... 39 0.40
A59437(A59437;B59437) KIAA1204 protein [imported] - human &AB03... 39 0.40
AP006852_8(AP006852|pid:none) Candida albicans genomic DNA, chro... 39 0.40
CU928176_477(CU928176|pid:none) Zygosaccharomyces rouxii strain ... 39 0.40
CP000502_351(CP000502|pid:none) Pichia stipitis CBS 6054 chromos... 39 0.40
AK293726_1(AK293726|pid:none) Homo sapiens cDNA FLJ61628 complet... 39 0.40
(A7KAX9) RecName: Full=Rho/Cdc42/Rac GTPase-activating protein R... 39 0.40
BC059290_1(BC059290|pid:none) Xenopus laevis hypothetical protei... 29 0.43
AB049856_1(AB049856|pid:none) Macaca fascicularis brain cDNA, cl... 39 0.53
BC166473_1(BC166473|pid:none) Rattus norvegicus Rac GTPase-activ... 39 0.53
BC121905_1(BC121905|pid:none) Xenopus tropicalis oligophrenin 1,... 29 0.56
(Q7Z6I6) RecName: Full=Rho GTPase-activating protein 30; AltName... 38 0.69
(Q640N3) RecName: Full=Rho GTPase-activating protein 30; AltName... 38 0.69
CR382139_516(CR382139|pid:none) Debaryomyces hansenii strain CBS... 38 0.69
AB463226_1(AB463226|pid:none) Synthetic construct DNA, clone: pF... 38 0.69
AK160366_1(AK160366|pid:none) Homo sapiens mRNA for FLJ00267 pro... 38 0.69
BC082573_1(BC082573|pid:none) Mus musculus Rho GTPase activating... 38 0.69
AX268336_1(AX268336|pid:none) Sequence 1 from Patent WO0175106. ... 38 0.69
CR855139_3(CR855139|pid:none) Oryza sativa genomic DNA, chromoso... 29 0.74
(Q96M56) RecName: Full=Rho GTPase-activating protein FLJ32810; A... 38 0.90
(A6NI28) RecName: Full=Rho GTPase-activating protein 10-like; 38 0.90
BT026234_1(BT026234|pid:none) Bos taurus Hypothetical protein FL... 38 0.90
FN318883_1(FN318883|pid:none) Schistosoma japonicum isolate Anhu... 34 0.94
FN392322_709(FN392322|pid:none) Pichia pastoris GS115 chromosome... 28 0.94
BT054185_1(BT054185|pid:none) Zea mays full-length cDNA clone ZM... 33 0.95
A38218(A38218)GAP-associated protein p190 - rat 37 1.2
(Q9WVM1) RecName: Full=Rac GTPase-activating protein 1; AltName:... 37 1.2
AK168025_1(AK168025|pid:none) Mus musculus CRL-1722 L5178Y-R cDN... 37 1.2
AK166084_1(AK166084|pid:none) Mus musculus lung RCB-0558 LLC cDN... 37 1.2
BC137891_1(BC137891|pid:none) Mus musculus RIKEN cDNA 9030420J04... 37 1.2
BC070794_1(BC070794|pid:none) Xenopus laevis hypothetical protei... 29 1.5
CR382127_381(CR382127|pid:none) Yarrowia lipolytica strain CLIB1... 37 1.5
CU638744_374(CU638744|pid:none) Podospora anserina genomic DNA c... 37 1.5
CR382135_809(CR382135|pid:none) Debaryomyces hansenii chromosome... 37 1.5
AY184995_1(AY184995|pid:none) Dictyostelium discoideum inositol ... 37 1.5
CR382135_738(CR382135|pid:none) Debaryomyces hansenii strain CBS... 37 1.5
BT045981_1(BT045981|pid:none) Salmo salar clone ssal-rgf-538-163... 37 1.5
BT043074_1(BT043074|pid:none) Zea mays full-length cDNA clone ZM... 30 1.6
EU968428_1(EU968428|pid:none) Zea mays clone 320730 rac GTPase a... 30 1.6
AJ621558_1(AJ621558|pid:none) Mus musculus mRNA for ARAP1 (Centd... 29 1.9
(Q4LDD4) RecName: Full=Arf-GAP, Rho-GAP domain, ANK repeat and P... 29 1.9
BC141179_1(BC141179|pid:none) Mus musculus ArfGAP with RhoGAP do... 29 1.9
AK137455_1(AK137455|pid:none) Mus musculus adult male bone cDNA,... 29 1.9
AK150132_1(AK150132|pid:none) Mus musculus bone marrow macrophag... 29 1.9
AK129213_1(AK129213|pid:none) Mus musculus mRNA for mKIAA0782 pr... 29 1.9
FN357359_23(FN357359|pid:none) Schistosoma mansoni genome sequen... 37 2.0
FN357417_18(FN357417|pid:none) Schistosoma mansoni genome sequen... 37 2.0
AB174072_1(AB174072|pid:none) Macaca fascicularis brain cDNA clo... 37 2.0
AE014297_3038(AE014297|pid:none) Drosophila melanogaster chromos... 29 2.5
BT003438_1(BT003438|pid:none) Drosophila melanogaster SD01504 fu... 29 2.5
AK168020_1(AK168020|pid:none) Mus musculus cDNA, RIKEN full-leng... 36 3.4
(Q6IFT4) RecName: Full=Rho GTPase-activating protein 20; AltName... 36 3.4
(Q6REY9) RecName: Full=Rho GTPase-activating protein 20; AltName... 36 3.4
AM989983_21(AM989983|pid:none) Zygosaccharomyces rouxii strain C... 36 3.4
AK129345_1(AK129345|pid:none) Mus musculus mRNA for mKIAA1391 pr... 36 3.4
AE016815_4(AE016815|pid:none) Ashbya gossypii (= Eremothecium go... 36 3.4
(P17121) RecName: Full=GTPase-activating protein SAC7; &S69673(... 36 3.4
AY501475_1(AY501475|pid:none) Rattus norvegicus RA and RhoGAP do... 36 3.4
FN357382_8(FN357382|pid:none) Schistosoma mansoni genome sequenc... 28 3.4
BC160606_1(BC160606|pid:none) Danio rerio zgc:158426, mRNA (cDNA... 35 5.8
AY190957_10(AY190957|pid:none) Drosophila willistoni clone DWIF0... 35 5.8
FM992695_48(FM992695|pid:none) Candida dubliniensis CD36 chromos... 35 5.8
AB168515_1(AB168515|pid:none) Macaca fascicularis testis cDNA cl... 35 5.8
BC121416_1(BC121416|pid:none) Xenopus tropicalis Rho GTPase acti... 35 7.6
(Q8BRH3) RecName: Full=Rho GTPase-activating protein 19; AltName... 35 7.6
(Q7Z6B7) RecName: Full=SLIT-ROBO Rho GTPase-activating protein 1... 35 7.6
CR382125_130(CR382125|pid:none) Kluyveromyces lactis strain NRRL... 35 7.6
FN392320_121(FN392320|pid:none) Pichia pastoris GS115 chromosome... 35 7.6
AY313783_1(AY313783|pid:none) Gallus gallus Rho GTPase activatin... 35 7.6
AK016763_1(AK016763|pid:none) Mus musculus adult male testis cDN... 35 7.6
CR380959_67(CR380959|pid:none) Candida glabrata strain CBS138 ch... 35 7.6
BC086680_1(BC086680|pid:none) Mus musculus Rho GTPase activating... 35 7.6
BC154705_1(BC154705|pid:none) Xenopus tropicalis hypothetical pr... 35 7.6
AK023899_1(AK023899|pid:none) Homo sapiens cDNA FLJ13837 fis, cl... 35 7.6
(Q91Z69) RecName: Full=SLIT-ROBO Rho GTPase-activating protein 1... 35 7.6
AK220317_1(AK220317|pid:none) Mus musculus mRNA for mFLJ00368 pr... 35 7.6
AB209473_1(AB209473|pid:none) Homo sapiens mRNA for centaurin de... 27 8.6
(Q96P48) RecName: Full=Arf-GAP, Rho-GAP domain, ANK repeat and P... 27 8.6
AB383990_1(AB383990|pid:none) Synthetic construct DNA, clone: pF... 27 8.7
AF411983_1(AF411983|pid:none) Homo sapiens centaurin delta2 mRNA... 27 8.8
BC140792_1(BC140792|pid:none) Homo sapiens ArfGAP with RhoGAP do... 27 8.8
BC056401_1(BC056401|pid:none) Homo sapiens ArfGAP with RhoGAP do... 27 9.1
T25195(T25195)hypothetical protein T23G11.9 - Caenorhabditis ele... 34 9.9
(P32019) RecName: Full=Type II inositol-1,4,5-trisphosphate 5-ph... 34 9.9
BC129764_1(BC129764|pid:none) Xenopus laevis hypothetical protei... 34 9.9
A41075(A41075)inositol-1,4,5-trisphosphate 5-phosphatase (EC 3.1... 34 9.9
AM920429_120(AM920429|pid:none) Penicillium chrysogenum Wisconsi... 34 9.9
AL603790_4(AL603790|pid:none) Human DNA sequence from clone RP11... 34 9.9
FN360661_1(FN360661|pid:none) Schistosoma mansoni genome sequenc... 34 9.9
BC098852_1(BC098852|pid:none) Rattus norvegicus inositol polypho... 34 9.9
Z81130_4(Z81130|pid:none) Caenorhabditis elegans Cosmid T23G11, ... 34 9.9
AK022846_1(AK022846|pid:none) Homo sapiens cDNA FLJ12784 fis, cl... 34 9.9
AL603790_2(AL603790|pid:none) Human DNA sequence from clone RP11... 34 9.9
AL603790_3(AL603790|pid:none) Human DNA sequence from clone RP11... 34 9.9
CU928170_626(CU928170|pid:none) Kluyveromyces thermotolerans str... 34 9.9
FN318882_1(FN318882|pid:none) Schistosoma japonicum isolate Anhu... 34 9.9

>T18289(T18289) racGAP protein - slime mold (Dictyostelium
discoideum) &Y10159_1(Y10159|pid:none)
Length = 1335

Score = 96.3 bits (238), Expect(2) = 8e-28
Identities = 42/84 (50%), Positives = 59/84 (70%)
Frame = +1

Query: 160 PKNVVLLTKWLXANGAIKEXGVFXVNGNTTTMEQIKKNFSQGKDDLTKYTSADIHSMAGC 339
PK V + +WL A+ E G+F + GN T+++IKK+F +GK DL+K+ S+DIHS+AG
Sbjct: 28 PKIVAQVIEWLDKFNAVNEEGIFRIPGNGVTIQEIKKSFDEGKGDLSKFNSSDIHSVAGV 87

Query: 340 LKFILRXLPEPIFTWDFYPIFIKI 411
LK LR LPEP+F W +Y FIK+
Sbjct: 88 LKLYLRELPEPLFIWRYYSTFIKV 111

Score = 52.4 bits (124), Expect(2) = 8e-28
Identities = 26/46 (56%), Positives = 33/46 (71%)
Frame = +2

Query: 449 LKMLIHGLPYTSRTLVFQLFGFLSKFSVHQDQNKMTPKNLATVFAP 586
L+ML +GLP +R LV L FL+K S++ NKMT +NLATVFAP
Sbjct: 124 LRMLCYGLPKVNRDLVLSLMVFLNKISLNNRVNKMTSQNLATVFAP 169

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,205,959,959
Number of extensions: 17592168
Number of successful extensions: 39587
Number of sequences better than 10.0: 458
Number of HSP's gapped: 39510
Number of HSP's successfully gapped: 776
Length of query: 429
Length of database: 1,040,966,779
Length adjustment: 131
Effective length of query: 298
Effective length of database: 621,205,444
Effective search space: 185119222312
Effective search space used: 185119222312
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.73 gvh: 0.45 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.32 mip: 0.06
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
36.0 %: nuclear
16.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: peroxisomal

>> prediction for Contig-U11356-1 is cyt

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 3
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 1
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0