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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U11319-1
Contig ID Contig-U11319-1
Contig update 2002.12.18
Contig sequence 
>Contig-U11319-1 (Contig-U11319-1Q) /CSM_Contig/Contig-U11319-1Q.Seq.d
GGACATCTCATCAGTTGTAACATTCACACATTTAGAGCTCCACCCCCAAT
TGGAATCTAAATTCATTATTTTAGCAGGTGAATTATTAAAAAAATAAAAT
AAATACAATAAAATAAAATAATAAAATAAAATAATAATAAATAATAATAA
ATAAATAATAAATAATAAAGATTTTAGAATGTTTTCAAATAATAATACAT
TTAATGAAAATGGTACAACAAATGATAGAGTTGAACAATTTTCAAAACAA
TTATTTGGAGGTTTAGTTCAAGCAGCTAAATTATCAAATAATTTACCATC
AGAAGAGGATTATTCATATTATGAAACATTCCCAGAATTTAAATTAAAAA
TGAATTCATTGGGAAAGAGATTATTAAATTTAGCTCAAAATTTTGTACAA
TCTGAAAATCCAAAATCAGATTTATCATTAACTGATACAAATGATGTAGA
TGATTTATCCGATCGTTTTAGTGGTATTGTTGATATCGTTGATGGAATGA
TTGATAAAGTTGATAAAACAATTGATCCAAAATATAATCAAAATCAAACC
AATATTTTTATATCATCAACTATTCAACCAGGAAATAGTAAAAAAGCAGG
AAATGAAATAAATATGTTTTATGGTAATAATATAGTTAGNNNNNNNNN--
--------NNNNNNNNNNAGGTTTAGCACGTGATGAAGATGAAAGTGTTC
GTTATATNTTACCAAATCAAATGATGTTAACAATCGTTGAAAGACAACCA
ACTTCAGTACAAGAATTATTAACTCTTTGTTCACCAATTCCACCATCAAC
TTCACCATCGTNTTTATTAGATTCAACTAATAATCCACCAAAATNTAAAA
AAGATGAAAATGCTTCTGTCACTGATACTTTTTCATTNTTGAAANAAATT
GGTTGGATTAATAATGAACAATCTGCTGATTNTTTTAAACCAGTTTCACA
ACAATTACAACAACAACCAGCATCATCAGCAACAGCAACAACAACAACAA
CATCAACATTATTTCAACCACAACAACCATCGCCACAATTAAATACATCA
ACTACTATAACTACAACAACTAGCGGCGTTGTTTTTAAAAAACAATTTAA
ACAAACATTACAACAACAACCATNTCAACAACAACCAATTCAACCATCCC
AACAACCACAACAACCACAACAACAACAACAACAATTTGTNTCATTTGAT
TATTCACAAGTTTCAACTATACAGCAAACAAATTCAAATAATCCAAATCA
ACAACAAAACTTTTTCAATACCGATTTCCAAGGAACAAAGAAAAAATNTT
CTTCAACTGGATCAGTGAAGGCTAAATCCGGTACTTTCGTATTCACAAAA
AAAAAATAGTAT
Gap gap included
Contig length 1352
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 1
Number of EST 2
Link to clone list U11319
List of clone(s) 

est1=AHF212F,1,639
est2=AHF212Z,640,1334
Translated Amino Acid sequence 
dissvvtfthlelhpqleskfiilagellkk*nkynkik**nkiiinnnk*IINNKDFRM
FSNNNTFNENGTTNDRVEQFSKQLFGGLVQAAKLSNNLPSEEDYSYYETFPEFKLKMNSL
GKRLLNLAQNFVQSENPKSDLSLTDTNDVDDLSDRFSGIVDIVDGMIDKVDKTIDPKYNQ
NQTNIFISSTIQPGNSKKAGNEINMFYGNNIVXXX---

---XXXGLARDEDESVRYXLPNQMMLTIVERQPTSVQELLTLCSPIPPSTSPSXLLDSTN
NPPKXKKDENASVTDTFSXLKXIGWINNEQSADXFKPVSQQLQQQPASSATATTTTTSTL
FQPQQPSPQLNTSTTITTTTSGVVFKKQFKQTLQQQPXQQQPIQPSQQPQQPQQQQQQFV
SFDYSQVSTIQQTNSNNPNQQQNFFNTDFQGTKKKXSSTGSVKAKSGTFVFTKKK*y
Translated Amino Acid sequence (All Frames) 
Frame A:
ghliscnihtfrapppigi*ihyfsr*iikkik*iq*nkiik*nnnk***innk**rf*n
vfk**yi**kwynk**s*tifktiiwrfssss*iik*ftirrglfil*nipri*iknefi
gkeiikfsskfcti*kskirfiin*yk*cr*firsf*wyc*yr*wnd**s**nn*ski*s
ksnqyfyiinystrk**ksrk*nkyvlw**ys*xxx---

---xxxxv*hvmkmkvfvixyqik*c*qslkdnqlqykny*lfvhqfhhqlhhrxy*iql
iihqnxkkmkmllslilfhx*xklvglimnnllixlnqfhnnynnnqhhqqqqqqqqhqh
yfnhnnhrhn*ihqll*lqqlaalflknnlnkhynnnhxnnnqfnhpnnhnnhnnnnnnl
xhliihkfqlyskqiqiiqinnktfsipiskeqrknxlqldq*rlnpvlsysqkkns

Frame B:
dissvvtfthlelhpqleskfiilagellkk*nkynkik**nkiiinnnk*IINNKDFRM
FSNNNTFNENGTTNDRVEQFSKQLFGGLVQAAKLSNNLPSEEDYSYYETFPEFKLKMNSL
GKRLLNLAQNFVQSENPKSDLSLTDTNDVDDLSDRFSGIVDIVDGMIDKVDKTIDPKYNQ
NQTNIFISSTIQPGNSKKAGNEINMFYGNNIVXXX---

---xxxrfst**r*kcslyxtksndvnnr*kttnfstriinslftnstinftivfirfn*
*stkx*kr*kcfch*yffixexnwld***tic*xf*tsfttittttsiisnsnnnnnini
isttttiatikyinyynynn*rrcf*kti*tnittttxstttnstiptttttttttttic
xi*lftsfnytankfk*sksttklfqyrfprnkekxffnwiseg*iryfrihkkkiv

Frame C:
tshql*hshi*sstpnwnlnslf*qvny*knkintik*nnkik***iiink**iikilec
fqiiihlmkmvqqmielnnfqnnylev*fkqlnyqiiyhqkriihimkhsqnln*k*ihw
erdy*i*lkilynlkiqnqiyh*liqmm*miypivlvvllislme*liklikqliqniik
ikpiflyhqlfnqeivkkqemk*icfmvii*lxxx---

---XXXGLARDEDESVRYXLPNQMMLTIVERQPTSVQELLTLCSPIPPSTSPSXLLDSTN
NPPKXKKDENASVTDTFSXLKXIGWINNEQSADXFKPVSQQLQQQPASSATATTTTTSTL
FQPQQPSPQLNTSTTITTTTSGVVFKKQFKQTLQQQPXQQQPIQPSQQPQQPQQQQQQFV
SFDYSQVSTIQQTNSNNPNQQQNFFNTDFQGTKKKXSSTGSVKAKSGTFVFTKKK*y
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U11319-1 (Contig-U11319-1Q)
/CSM_Contig/Contig-U11319-1Q.Seq.d
         (1362 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U11319-1 (Contig-U11319-1Q) /CSM_Contig/Conti...   934  0.0
Contig-U14559-1 (Contig-U14559-1Q) /CSM_Contig/Conti...   307  2e-83
Contig-U11064-1 (Contig-U11064-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U12830-1 (Contig-U12830-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U13925-1 (Contig-U13925-1Q) /CSM_Contig/Conti...    38  0.024
Contig-U11911-1 (Contig-U11911-1Q) /CSM_Contig/Conti...    38  0.024
Contig-U09191-1 (Contig-U09191-1Q) /CSM_Contig/Conti...    38  0.024
Contig-U14635-1 (Contig-U14635-1Q) /CSM_Contig/Conti...    36  0.097
Contig-U14123-1 (Contig-U14123-1Q) /CSM_Contig/Conti...    36  0.097
Contig-U13197-1 (Contig-U13197-1Q) /CSM_Contig/Conti...    36  0.097

>Contig-U11319-1 (Contig-U11319-1Q) /CSM_Contig/Contig-U11319-1Q.Seq.d
          Length = 1362

 Score =  934 bits (471), Expect = 0.0
 Identities = 471/471 (100%)
 Strand = Plus / Plus

                                                                       
Query: 169 agattttagaatgttttcaaataataatacatttaatgaaaatggtacaacaaatgatag 228
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 agattttagaatgttttcaaataataatacatttaatgaaaatggtacaacaaatgatag 228

                                                                       
Query: 229 agttgaacaattttcaaaacaattatttggaggtttagttcaagcagctaaattatcaaa 288
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 agttgaacaattttcaaaacaattatttggaggtttagttcaagcagctaaattatcaaa 288

                                                                       
Query: 289 taatttaccatcagaagaggattattcatattatgaaacattcccagaatttaaattaaa 348
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 taatttaccatcagaagaggattattcatattatgaaacattcccagaatttaaattaaa 348

                                                                       
Query: 349 aatgaattcattgggaaagagattattaaatttagctcaaaattttgtacaatctgaaaa 408
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 aatgaattcattgggaaagagattattaaatttagctcaaaattttgtacaatctgaaaa 408

                                                                       
Query: 409 tccaaaatcagatttatcattaactgatacaaatgatgtagatgatttatccgatcgttt 468
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tccaaaatcagatttatcattaactgatacaaatgatgtagatgatttatccgatcgttt 468

                                                                       
Query: 469 tagtggtattgttgatatcgttgatggaatgattgataaagttgataaaacaattgatcc 528
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 tagtggtattgttgatatcgttgatggaatgattgataaagttgataaaacaattgatcc 528

                                                                       
Query: 529 aaaatataatcaaaatcaaaccaatatttttatatcatcaactattcaaccaggaaatag 588
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 aaaatataatcaaaatcaaaccaatatttttatatcatcaactattcaaccaggaaatag 588

                                                              
Query: 589 taaaaaagcaggaaatgaaataaatatgttttatggtaataatatagttag 639
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 taaaaaagcaggaaatgaaataaatatgttttatggtaataatatagttag 639


 Score =  543 bits (274), Expect = e-154
 Identities = 292/292 (100%)
 Strand = Plus / Plus

                                                                       
Query: 669 aggtttagcacgtgatgaagatgaaagtgttcgttatatnttaccaaatcaaatgatgtt 728
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 aggtttagcacgtgatgaagatgaaagtgttcgttatatnttaccaaatcaaatgatgtt 728

                                                                       
Query: 729 aacaatcgttgaaagacaaccaacttcagtacaagaattattaactctttgttcaccaat 788
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 aacaatcgttgaaagacaaccaacttcagtacaagaattattaactctttgttcaccaat 788

                                                                       
Query: 789 tccaccatcaacttcaccatcgtntttattagattcaactaataatccaccaaaatntaa 848
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 tccaccatcaacttcaccatcgtntttattagattcaactaataatccaccaaaatntaa 848

                                                                       
Query: 849 aaaagatgaaaatgcttctgtcactgatactttttcattnttgaaanaaattggttggat 908
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 aaaagatgaaaatgcttctgtcactgatactttttcattnttgaaanaaattggttggat 908

                                                               
Query: 909 taataatgaacaatctgctgattnttttaaaccagtttcacaacaattacaa 960
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909 taataatgaacaatctgctgattnttttaaaccagtttcacaacaattacaa 960


 Score =  307 bits (155), Expect = 2e-83
 Identities = 161/161 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1186 tttgtntcatttgattattcacaagtttcaactatacagcaaacaaattcaaataatcca 1245
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1186 tttgtntcatttgattattcacaagtttcaactatacagcaaacaaattcaaataatcca 1245

                                                                        
Query: 1246 aatcaacaacaaaactttttcaataccgatttccaaggaacaaagaaaaaatnttcttca 1305
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1246 aatcaacaacaaaactttttcaataccgatttccaaggaacaaagaaaaaatnttcttca 1305

                                                     
Query: 1306 actggatcagtgaaggctaaatccggtactttcgtattcac 1346
            |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1306 actggatcagtgaaggctaaatccggtactttcgtattcac 1346


 Score =  170 bits (86), Expect = 3e-42
 Identities = 86/86 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  ggacatctcatcagttgtaacattcacacatttagagctccacccccaattggaatctaa 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ggacatctcatcagttgtaacattcacacatttagagctccacccccaattggaatctaa 60

                                    
Query: 61 attcattattttagcaggtgaattat 86
          ||||||||||||||||||||||||||
Sbjct: 61 attcattattttagcaggtgaattat 86


 Score =  127 bits (64), Expect = 3e-29
 Identities = 64/64 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1025 aaccatcgccacaattaaatacatcaactactataactacaacaactagcggcgttgttt 1084
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1025 aaccatcgccacaattaaatacatcaactactataactacaacaactagcggcgttgttt 1084

                
Query: 1085 ttaa 1088
            ||||
Sbjct: 1085 ttaa 1088


>Contig-U14559-1 (Contig-U14559-1Q) /CSM_Contig/Contig-U14559-1Q.Seq.d
          Length = 559

 Score =  307 bits (155), Expect = 2e-83
 Identities = 161/161 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1186 tttgtntcatttgattattcacaagtttcaactatacagcaaacaaattcaaataatcca 1245
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383  tttgtntcatttgattattcacaagtttcaactatacagcaaacaaattcaaataatcca 442

                                                                        
Query: 1246 aatcaacaacaaaactttttcaataccgatttccaaggaacaaagaaaaaatnttcttca 1305
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443  aatcaacaacaaaactttttcaataccgatttccaaggaacaaagaaaaaatnttcttca 502

                                                     
Query: 1306 actggatcagtgaaggctaaatccggtactttcgtattcac 1346
            |||||||||||||||||||||||||||||||||||||||||
Sbjct: 503  actggatcagtgaaggctaaatccggtactttcgtattcac 543


 Score = 85.7 bits (43), Expect = 1e-16
 Identities = 43/43 (100%)
 Strand = Plus / Plus

                                                       
Query: 1046 catcaactactataactacaacaactagcggcgttgtttttaa 1088
            |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243  catcaactactataactacaacaactagcggcgttgtttttaa 285


 Score = 38.2 bits (19), Expect = 0.024
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 1035 acaattaaatacatcaact 1053
            |||||||||||||||||||
Sbjct: 145  acaattaaatacatcaact 163


>Contig-U11064-1 (Contig-U11064-1Q) /CSM_Contig/Contig-U11064-1Q.Seq.d
          Length = 2103

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 1047 atcaactactataactacaacaacta 1072
            ||||||||||| ||||||||||||||
Sbjct: 620  atcaactactacaactacaacaacta 645


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 23,406
Number of Sequences: 6905
Number of extensions: 23406
Number of successful extensions: 3028
Number of sequences better than 10.0: 337
length of query: 1362
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1346
effective length of database: 5,564,391
effective search space: 7489670286
effective search space used: 7489670286
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.23
Homology vs DNA 
Query= Contig-U11319-1 (Contig-U11319-1Q) /CSM_Contig/Contig-U11319-1Q.Seq.d
         (1362 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...   589   0.0    7
(BJ332986) Dictyostelium discoideum cDNA clone:dda41g04, 5' ...   846   0.0    2
(BJ350800) Dictyostelium discoideum cDNA clone:dda41g04, 3' ...   517   0.0    3
(BJ405017) Dictyostelium discoideum cDNA clone:dds30i07, 3' ...   307   4e-91  2
(ER424332) 1092963737897 Global-Ocean-Sampling_GS-35-01-01-1...    54   0.014  1
(FI022171) CHO_OF6930xg20f1.ab1 CHO_OF6 Nicotiana tabacum ge...    52   0.056  1
(AF165818) Guillardia theta nucleomorph chromosome 1, comple...    40   0.083  11
(CT308413) Sus scrofa genomic clone CH242-317G7, genomic sur...    50   0.22   1
(AM685093) Entamoeba terrapinae GSS, clone terra021h09.q1k.        48   0.28   2
(BH162565) ENTSK90TR Entamoeba histolytica Sheared DNA Entam...    48   0.31   2
(AZ687704) ENTKZ84TR Entamoeba histolytica Sheared DNA Entam...    48   0.31   2
(BY654673) Mus musculus visual cortex cDNA, RIKEN full-lengt...    36   0.55   2
(AC154632) Mus musculus BAC clone RP23-292P17 from chromosom...    34   0.78   7
(AM482385) Vitis vinifera contig VV78X166167.13, whole genom...    48   0.88   1
(AC107247) Rattus norvegicus clone CH230-150K2, WORKING DRAF...    48   0.88   1
(CT556349) A BAC library has been constructed from cultivar ...    48   0.88   1
(CP000153) Sulfurimonas denitrificans DSM 1251, complete gen...    48   0.88   1
(AG754496) Macaca fuscata fuscata DNA, clone: MSB2-221D18_F,...    44   1.0    2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    34   1.1    14
(EJ844466) 1093017848476 Global-Ocean-Sampling_GS-30-02-01-1...    40   1.2    2
(AA757129) ah54g07.s1 Soares_testis_NHT Homo sapiens cDNA cl...    38   1.9    2
(AC188114) Pongo abelii chromosome UNK clone CH276-85H12, co...    40   1.9    8
(AA779393) ae26a09.s1 Soares_NbHFB Homo sapiens cDNA clone I...    38   2.0    2
(AI122955) ok32c08.s1 Soares_NSF_F8_9W_OT_PA_P_S1 Homo sapie...    38   2.0    2
(AI039412) ox40f06.s1 Soares_total_fetus_Nb2HF8_9w Homo sapi...    38   2.1    2
(AI016275) ot72a06.s1 Soares_total_fetus_Nb2HF8_9w Homo sapi...    38   2.1    2
(AI056113) ow33c02.s1 Soares_parathyroid_tumor_NbHPA Homo sa...    38   2.2    2
(I44516) Sequence 19 from patent US 5635177.                       40   2.2    2
(DD214972) Protein Tyrosine Kinase Agonist Antibodies.             40   2.2    2
(AR447107) Sequence 19 from patent US 6673343.                     40   2.2    2
(AR262792) Sequence 19 from patent US 6331302.                     40   2.2    2
(AA907917) ol24b11.s1 Soares_NFL_T_GBC_S1 Homo sapiens cDNA ...    38   2.2    2
(AA460978) zx63d02.s1 Soares_total_fetus_Nb2HF8_9w Homo sapi...    38   2.3    2
(EJ377884) 1092963750128 Global-Ocean-Sampling_GS-28-01-01-1...    34   2.3    2
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    34   2.4    11
(EF032180) Polistes aurifer voucher JC151 16S ribosomal RNA ...    32   2.4    2
(AR346802) Sequence 1413 from patent US 6583275.                   44   2.6    2
(AC151526) Medicago truncatula clone mth2-78c9, complete seq...    38   2.6    7
(AA772340) ai43c02.s1 Soares_parathyroid_tumor_NbHPA Homo sa...    38   2.7    2
(AM471779) Vitis vinifera, whole genome shotgun sequence, co...    46   3.5    1
(AC137644) Artibeus jamaicensis clone 25B10, complete sequence.    46   3.5    1
(AL137852) Human DNA sequence from clone RP11-131A5 on chrom...    46   3.5    1
(CW650407) OA_ABa0190K22.r OA_ABa Oryza australiensis genomi...    46   3.5    1
(CW581103) OA_ABa0111H09.r OA_ABa Oryza australiensis genomi...    46   3.5    1
(FK811494) PRAG-aac81b11.g1 Sand_fly_EST_Normalized Phleboto...    46   3.5    1
(FG114747) PRAG-aab78c05.g1 Sand_fly_EST_Normalized Phleboto...    46   3.5    1
(FG110973) PRAG-aac72g02.g1 Sand_fly_EST_Normalized Phleboto...    46   3.5    1
(EY208813) PRAG-aaa77b07.g1 Sand_fly_EST_Normalized Phleboto...    46   3.5    1
(AP008230) Desulfitobacterium hafniense Y51 DNA, complete ge...    46   3.5    1
(EK256245) 1095462011785 Global-Ocean-Sampling_GS-31-01-01-1...    36   3.8    2
(CP000061) Aster yellows witches'-broom phytoplasma AYWB, co...    36   4.0    17
(EK193774) 1095460029724 Global-Ocean-Sampling_GS-31-01-01-1...    36   4.0    2
(AL022149) Human DNA sequence from clone RP1-122K23 on chrom...    44   4.2    4
(AC115684) Dictyostelium discoideum chromosome 2 map 3108975...    36   4.8    9
(AF458885) Clostridium difficile strain 54823 SlpA (slpA) ge...    42   4.8    2
(AF458884) Clostridium difficile strain 56026 SlpA (slpA) ge...    42   4.8    2
(AF458883) Clostridium difficile strain ATCC 43601 S-layer p...    42   4.8    2
(BX649288) Zebrafish DNA sequence from clone CH211-205B11 in...    32   6.5    2
(AM442399) Vitis vinifera contig VV78X027427.9, whole genome...    34   6.9    5
(AA598732) ae49g02.s1 Stratagene lung carcinoma 937218 Homo ...    38   7.1    2
(AA905847) oj87d11.s1 Soares_NFL_T_GBC_S1 Homo sapiens cDNA ...    38   7.3    2
(AA612963) nq38g11.s1 NCI_CGAP_Co10 Homo sapiens cDNA clone ...    38   7.6    2
(CJ223615) Mus musculus cDNA, RIKEN full-length enriched lib...    36   7.7    2
(AA878557) oj17a06.s1 NCI_CGAP_Kid5 Homo sapiens cDNA clone ...    38   8.0    2
(AA459940) zx66a02.s1 Soares_total_fetus_Nb2HF8_9w Homo sapi...    38   8.2    2
(AE014821) Plasmodium falciparum 3D7 chromosome 14 section 6...    34   8.3    10
(AA885778) nx23g10.s1 NCI_CGAP_GC3 Homo sapiens cDNA clone I...    38   8.5    2
(BX224513) Danio rerio genomic clone DKEY-54I4, genomic surv...    32   8.8    2
(AE014825) Plasmodium falciparum 3D7 chromosome 14 section 1...    32   9.5    12
(BY383288) Mus musculus 1 cell embryo 1 cell cDNA, RIKEN ful...    38   9.6    2

>(AC116982) Dictyostelium discoideum chromosome 2 map 3622643-3879522
              strain AX4, complete sequence.
          Length = 256879

 Score =  589 bits (297), Expect(7) = 0.0
 Identities = 300/301 (99%)
 Strand = Plus / Minus


Query: 212    ggtacaacaaatgatagagttgaacaattttcaaaacaattatttggaggtttagttcaa 271
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161675 ggtacaacaaatgatagagttgaacaattttcaaaacaattatttggaggtttagttcaa 161616


Query: 272    gcagctaaattatcaaataatttaccatcagaagaggattattcatattatgaaacattc 331
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161615 gcagctaaattatcaaataatttaccatcagaagaggattattcatattatgaaacattc 161556


Query: 332    ccagaatttaaattaaaaatgaattcattgggaaagagattattaaatttagctcaaaat 391
              ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 161555 ccagaatttaaattaaaaatgaattcattaggaaagagattattaaatttagctcaaaat 161496


Query: 392    tttgtacaatctgaaaatccaaaatcagatttatcattaactgatacaaatgatgtagat 451
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161495 tttgtacaatctgaaaatccaaaatcagatttatcattaactgatacaaatgatgtagat 161436


Query: 452    gatttatccgatcgttttagtggtattgttgatatcgttgatggaatgattgataaagtt 511
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161435 gatttatccgatcgttttagtggtattgttgatatcgttgatggaatgattgataaagtt 161376


Query: 512    g 512
              |
Sbjct: 161375 g 161375

 Score =  301 bits (152), Expect(7) = 0.0
 Identities = 156/158 (98%)
 Strand = Plus / Minus


Query: 1186   tttgtntcatttgattattcacaagtttcaactatacagcaaacaaattcaaataatcca 1245
              ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158142 tttgtctcatttgattattcacaagtttcaactatacagcaaacaaattcaaataatcca 158083


Query: 1246   aatcaacaacaaaactttttcaataccgatttccaaggaacaaagaaaaaatnttcttca 1305
              |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 158082 aatcaacaacaaaactttttcaataccgatttccaaggaacaaagaaaaaatcttcttca 158023


Query: 1306   actggatcagtgaaggctaaatccggtactttcgtatt 1343
              ||||||||||||||||||||||||||||||||||||||
Sbjct: 158022 actggatcagtgaaggctaaatccggtactttcgtatt 157985

 Score =  266 bits (134), Expect(7) = 0.0
 Identities = 147/153 (96%)
 Strand = Plus / Minus


Query: 795    atcaacttcaccatcgtntttattagattcaactaataatccaccaaaatntaaaaaaga 854
              ||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 158620 atcaacttcaccatcatctttattagattcaactaataatccaccaaaatctaaaaaaga 158561


Query: 855    tgaaaatgcttctgtcactgatactttttcattnttgaaanaaattggttggattaataa 914
              ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 158560 tgaaaatgcttctgtcactgatactttttcattcttgaaagaaattggttggattaataa 158501


Query: 915    tgaacaatctgctgattnttttaaaccagtttc 947
              ||||||||||||||||| |||||||||||||||
Sbjct: 158500 tgaacaatctgctgattcttttaaaccagtttc 158468

 Score =  254 bits (128), Expect(7) = 0.0
 Identities = 130/131 (99%)
 Strand = Plus / Minus


Query: 669    aggtttagcacgtgatgaagatgaaagtgttcgttatatnttaccaaatcaaatgatgtt 728
              ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 160048 aggtttagcacgtgatgaagatgaaagtgttcgttatatcttaccaaatcaaatgatgtt 159989


Query: 729    aacaatcgttgaaagacaaccaacttcagtacaagaattattaactctttgttcaccaat 788
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159988 aacaatcgttgaaagacaaccaacttcagtacaagaattattaactctttgttcaccaat 159929


Query: 789    tccaccatcaa 799
              |||||||||||
Sbjct: 159928 tccaccatcaa 159918

 Score =  252 bits (127), Expect(7) = 0.0
 Identities = 127/127 (100%)
 Strand = Plus / Minus


Query: 512    gataaaacaattgatccaaaatataatcaaaatcaaaccaatatttttatatcatcaact 571
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161295 gataaaacaattgatccaaaatataatcaaaatcaaaccaatatttttatatcatcaact 161236


Query: 572    attcaaccaggaaatagtaaaaaagcaggaaatgaaataaatatgttttatggtaataat 631
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161235 attcaaccaggaaatagtaaaaaagcaggaaatgaaataaatatgttttatggtaataat 161176


Query: 632    atagtta 638
              |||||||
Sbjct: 161175 atagtta 161169

 Score =  167 bits (84), Expect(7) = 0.0
 Identities = 84/84 (100%)
 Strand = Plus / Minus


Query: 3      acatctcatcagttgtaacattcacacatttagagctccacccccaattggaatctaaat 62
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161884 acatctcatcagttgtaacattcacacatttagagctccacccccaattggaatctaaat 161825


Query: 63     tcattattttagcaggtgaattat 86
              ||||||||||||||||||||||||
Sbjct: 161824 tcattattttagcaggtgaattat 161801

 Score = 63.9 bits (32), Expect(7) = 0.0
 Identities = 32/32 (100%)
 Strand = Plus / Minus


Query: 1053   tactataactacaacaactagcggcgttgttt 1084
              ||||||||||||||||||||||||||||||||
Sbjct: 158275 tactataactacaacaactagcggcgttgttt 158244

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,242,880,726
Number of extensions: 78148817
Number of successful extensions: 6728968
Number of sequences better than 10.0: 71
Length of query: 1362
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1338
Effective length of database: 97,308,875,965
Effective search space: 130199276041170
Effective search space used: 130199276041170
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.29
Homology vs Protein 
Query= Contig-U11319-1 (Contig-U11319-1Q) /CSM_Contig/Contig-U11319-1Q.Seq.d
         (1362 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC151674_1(BC151674|pid:none) Bos taurus exosome component 10, m...    53   3e-05
AL606969_1(AL606969|pid:none) Mouse DNA sequence from clone RP23...    52   4e-05
AK162887_1(AK162887|pid:none) Mus musculus adult male hypothalam...    52   4e-05
AF092083_1(AF092083|pid:none) Mus musculus P100 polymyositis-scl...    52   4e-05
(P56960) RecName: Full=Exosome component 10; AltName: Full=Polym...    52   4e-05
BC027326_1(BC027326|pid:none) Mus musculus exosome component 10,...    52   4e-05
AK294058_1(AK294058|pid:none) Homo sapiens cDNA FLJ59618 complet...    51   8e-05
BC045429_1(BC045429|pid:none) Danio rerio zgc:55695, mRNA (cDNA ...    51   8e-05
AB169397_1(AB169397|pid:none) Macaca fascicularis testis cDNA, c...    51   8e-05
AB209236_1(AB209236|pid:none) Homo sapiens mRNA for exosome comp...    51   8e-05
(Q01780) RecName: Full=Exosome component 10; AltName: Full=Polym...    51   8e-05
BC067962_1(BC067962|pid:none) Xenopus tropicalis exosome compone...    50   1e-04
CU207387_1(CU207387|pid:none) Mouse DNA sequence from clone DN-2...    49   4e-04
CU207387_2(CU207387|pid:none) Mouse DNA sequence from clone DN-2...    49   4e-04
AM270365_14(AM270365|pid:none) Aspergillus niger contig An16c013...    49   5e-04
CU633865_173(CU633865|pid:none) Podospora anserina genomic DNA c...    47   0.002
FN319901_1(FN319901|pid:none) Schistosoma japonicum isolate Anhu...    47   0.002
FN357320_34(FN357320|pid:none) Schistosoma mansoni genome sequen...    42   0.051
AJ309000_1(AJ309000|pid:none) Trypanosoma brucei RRP6 gene for R...    37   1.6
AC091702_40(AC091702|pid:none) Trypanosoma brucei chromosome 4 c...    37   1.6
CP001434_16(CP001434|pid:none) Borrelia valaisiana VS116 plasmid...    37   2.1
AM494957_266(AM494957|pid:none) Leishmania braziliensis chromoso...    36   2.8
AJ632324_5(AJ632324|pid:none) Cotesia congregata virus complete ...    36   3.7
CT005271_323(CT005271|pid:none) Leishmania major strain Friedlin...    36   3.7
AL844509_40(AL844509|pid:none) Plasmodium falciparum 3D7 chromos...    36   3.7
AM502252_269(AM502252|pid:none) Leishmania infantum chromosome 34.     35   4.8
AE014297_1980(AE014297|pid:none) Drosophila melanogaster chromos...    35   4.8
BT032833_1(BT032833|pid:none) Drosophila melanogaster LD13130 fu...    35   4.8
AM180355_2358(AM180355|pid:none) Clostridium difficile 630 compl...    35   6.2
(Q10146) RecName: Full=Exosome complex exonuclease rrp6;        ...    35   6.3
Z70690_1(Z70690|pid:none) S.pombe chromosome I cosmid c1F3.            35   6.3
AE016816_205(AE016816|pid:none) Ashbya gossypii (= Eremothecium ...    35   8.2

>BC151674_1(BC151674|pid:none) Bos taurus exosome component 10, mRNA
           (cDNA clone MGC:166383 IMAGE:8474446), complete cds.
          Length = 702

 Score = 52.8 bits (125), Expect = 3e-05
 Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 8/131 (6%)
 Frame = +2

Query: 233 EQFSKQLFGGLVQAAKLSNNLPS-EEDYSYYETFPEFKLKMNSLGKRLLNLAQNFVQSEN 409
           + F K   G +V   K S  LP   ++Y +Y +FP F+    + G RLL      +Q
Sbjct: 33  DSFVKFALGAVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRLLQCMSRVMQYHG 92

Query: 410 PKSDLSLTDTNDVDDLSDRFSGIVDIVDGMIDKVDKTIDPK--YNQNQTNIF-----ISS 568
            +S++   D + V +L D+F  +VD  D ++++V   +D     N+NQ  +      +
Sbjct: 93  CRSNIK--DRSKVTELEDKFDLLVDTNDVILERVGILLDEASGVNKNQQPVLPAGLQVPQ 150

Query: 569 TIQPGNSKKAG 601
           TI    ++KAG
Sbjct: 151 TIVSSWNRKAG 161

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,262,744,762
Number of extensions: 20737887
Number of successful extensions: 43469
Number of sequences better than 10.0: 32
Number of HSP's gapped: 43375
Number of HSP's successfully gapped: 33
Length of query: 454
Length of database: 1,040,966,779
Length adjustment: 132
Effective length of query: 322
Effective length of database: 618,001,159
Effective search space: 198996373198
Effective search space used: 198996373198
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.74  gvh: 0.43  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.03
 nuc: 0.10  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: endoplasmic reticulum
	  4.0 %: peroxisomal

>> prediction for Contig-U11319-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 1
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0