Contig-U11311-1
Contig ID Contig-U11311-1
Contig update 2002.12.18
Contig sequence
>Contig-U11311-1 (Contig-U11311-1Q) /CSM_Contig/Contig-U11311-1Q.Seq.d
AAATATATAAAAATTCATTGGAAATGATAGAACTTTTAAAAGAAGATGAC
GCTCCAAAGAAAATTGGTCATATTCAATTTGGTTTATTATCAGAAGATGA
TATAGTTAGATTATCACATGTTCAAATTGTTAATAGAGAATTATTTGATT
TAGTAAAGAGAAAACCAACACCATATGGTGTATTAGATAATAAATTGGGT
ACAAGCGATAAACAAGCAATGTGTACAACATGTGGATTAAGTATTGTCGA
TTGTGTTGGTCATTTTGGATATATTAAATTACAATTACCAGTTTTTCATA
TTGGATATTTAAAGAATATTATGAACATTTTACAAATGATTTGCAAGAGT
TGTTCAACCATTCTATTGAATGAAGAGAAGAAACAATATTATCTAAGAAA
GATGAGAAATAAAAAGATGGATAATCTACAAAGGAAGTCATTATTGAAAA
AGATATTTTTAGAGTGTAGAAAAACCAAAGAATGTTTGAAATGCGGTTCA
ACCAATGGTATGATTAAAAAGAGTGGTGCATTCAAGATCATTCATGAAAA
GTATAAAGGAAAGACAGAGTCATTGCAAGACTATTACGCATTGTATGATG
ACGCCATTAAATACAATCCAGAGATGAAA----------AAGGTTCAAAC
ATTAATATTGCTCAAATGATCTGTTGTGTAGGTCAACAGATTGTCAATGG
TACTCGTATTCCAAATGGTTTCACCAATAGAACTACACCCACATTTCAAA
CATTTTGCAAAGAATCCAAAATCAAAAGGTTTCGTTTCAAATAGTTTCTA
TACTGGTATGATTCCAACAGAATTCTTTTTTCACACTATGGGTGGTAGAG
AGGGTTTGGTAGATACTGCTGTAAAAACTGCTGAAACTGGTTATATGCAA
CGTCGTCTAATGAAAGCTTTAGAGGATCTTTCAACTCATTATGATTATAC
TGTACGTGATTCAATTGGTGGTATTGTTCAATTCATTTATGGTGATGATG
GTTTAGATCCAGCAGGTATGGAAGCAAAAGATAGACCTGTAGATTTCCTC
CGTGCAATGATGAGTGTTAAATCAACTCGTCAATGTAGAAATGAACCAGA
AATGAAACCATTTGAAATTCGTAAACTCGTTGAATCCATTATTGACAGCT
CTAAATTTGAAGCTTGTACAGATTTATTCAAAAATGAAATTAGAGTTTTC
TTTAATGGTAATGAAAAAACAAAAGGTTATATTCAAGAATTAATTAGTTT
ACGTAAACAATTTAAATTATCATCTTTTGATTTAAATGATAATGAAGATG
AAATTATTATTGAAGATAATTCTCCAATGGATATTAGTACTACTACTACT
ACTACCACCACCACCACTACAAATAATGCAGTTAAAATAACTAATATCAC
CACAGATA

Gap gap included
Contig length 1398
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 7713104
End point 7714414
Strand (PLUS/MINUS) PLUS
Number of clones 10
Number of EST 16
Link to clone list U11311
List of clone(s)

est1=AHO315F,1,615
est2=SHE423F,1,497
est3=SHE878F,1,616
est4=SHA179F,7,496
est5=SHG344F,7,629
est6=AHE722F,20,576
est7=AHK468F,295,438
est8=AHK468Z,630,1129
est9=AHE722Z,636,1395
est10=SHA179Z,673,1400
est11=AHO115Z,681,1399
est12=SHG344Z,697,1413
est13=SHE878Z,709,1398
est14=SHE423Z,728,1423
est15=CHJ412Z,791,1278
est16=AHG288Z,900,1288
Translated Amino Acid sequence
IYKNSLEMIELLKEDDAPKKIGHIQFGLLSEDDIVRLSHVQIVNRELFDLVKRKPTPYGV
LDNKLGTSDKQAMCTTCGLSIVDCVGHFGYIKLQLPVFHIGYLKNIMNILQMICKSCSTI
LLNEEKKQYYLRKMRNKKMDNLQRKSLLKKIFLECRKTKECLKCGSTNGMIKKSGAFKII
HEKYKGKTESLQDYYALYDDAIKYNPEMK---

---GSNINIAQMICCVGQQIVNGTRIPNGFTNRTTPTFQTFCKESKIKRFRFK*flywyd
snrilfshygw*rgfgryccknc*nwlyatssnesfrgsfnsl*lyct*fnwwycsihlw
**wfrssrygskr*tcrfppcndec*inssm*k*trneti*ns*tr*ihy*ql*i*slyr
fiqk*n*sfl*w**knkrlysrin*ft*ti*iiif*fk***r*nyy*r*fsngy*yyyyy
yhhhhyk*cs*nn*yhhr


Translated Amino Acid sequence (All Frames)
Frame A:
kyikihwk**nf*kkmtlqrklvifnlvyyqkmi*ldyhmfkllienyli**renqhhmv
y*iinwvqainkqcvqhvd*vlsivlvildilnynyqffildi*ril*tfyk*farvvqp
fy*mkrrnnii*er*eikrwiiykgshy*kryf*svekpknv*navqpmv*lkrvvhsrs
fmksikerqshcktithcmmtplntiqr*---

---kvqtlillk*svv*vnrlsmvlvfqmvspielhphfkhfaknpkskgfvsnsfytgm
iptefffhtmggreglvdtavktaetgymqrrlmkaledlsthydytvrdsiggivqfiy
gddgldpagmeakdrpvdflrammsvkstrqcrnepemkpfeirklvesiidsskfeact
dlfkneirvffngnektkgyiqelislrkqfklssfdlndnedeiiiednspmdistttt
tttttttnnavkitnittd

Frame B:
ni*kfigndrtfkrr*rskenwsysiwfiirr*ys*iitcsnc**rii*fskektntiwc
ir**igykr*tsnvynmwikycrlcwsfwiy*ititsfsywifkeyyehftndlqelfnh
sie*reetilskkdek*kdg*stkeviiekdifrv*knqrmfemrfnqwyd*kewciqdh
s*kv*rkdrviarllriv**rh*iqsrde---

---rfkh*ycsndllcrstdcqwysyskwfhq*nythisnilqriqnqkvsfqivsilv*
fqqnsfftlwvvervw*ill*kllklvicnvv**kl*rifqlimiilyviqlvvlfnsfm
vmmv*iqqvwkqkidl*issvq**vlnqlvnvemnqk*nhlkfvnslnplltalnlklvq
iyskmklefslmvmkkqkvifkn*lvyvnnlnyhlli*mimkmklllkiilqwilvllll
lpppplqimqlk*lispqi

Frame C:
IYKNSLEMIELLKEDDAPKKIGHIQFGLLSEDDIVRLSHVQIVNRELFDLVKRKPTPYGV
LDNKLGTSDKQAMCTTCGLSIVDCVGHFGYIKLQLPVFHIGYLKNIMNILQMICKSCSTI
LLNEEKKQYYLRKMRNKKMDNLQRKSLLKKIFLECRKTKECLKCGSTNGMIKKSGAFKII
HEKYKGKTESLQDYYALYDDAIKYNPEMK---

---GSNINIAQMICCVGQQIVNGTRIPNGFTNRTTPTFQTFCKESKIKRFRFK*flywyd
snrilfshygw*rgfgryccknc*nwlyatssnesfrgsfnsl*lyct*fnwwycsihlw
**wfrssrygskr*tcrfppcndec*inssm*k*trneti*ns*tr*ihy*ql*i*slyr
fiqk*n*sfl*w**knkrlysrin*ft*ti*iiif*fk***r*nyy*r*fsngy*yyyyy
yhhhhyk*cs*nn*yhhr

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U11311-1 (Contig-U11311-1Q)
/CSM_Contig/Contig-U11311-1Q.Seq.d
(1408 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U11311-1 (Contig-U11311-1Q) /CSM_Contig/Conti... 2591 0.0
Contig-U13120-1 (Contig-U13120-1Q) /CSM_Contig/Conti... 84 5e-16
Contig-U03257-1 (Contig-U03257-1Q) /CSM_Contig/Conti... 40 0.006
Contig-U11879-1 (Contig-U11879-1Q) /CSM_Contig/Conti... 38 0.025
Contig-U10972-1 (Contig-U10972-1Q) /CSM_Contig/Conti... 38 0.025
Contig-U10354-1 (Contig-U10354-1Q) /CSM_Contig/Conti... 38 0.025
Contig-U09185-1 (Contig-U09185-1Q) /CSM_Contig/Conti... 38 0.025
Contig-U07012-1 (Contig-U07012-1Q) /CSM_Contig/Conti... 38 0.025
Contig-U14392-1 (Contig-U14392-1Q) /CSM_Contig/Conti... 36 0.100
Contig-U12948-1 (Contig-U12948-1Q) /CSM_Contig/Conti... 36 0.100

>Contig-U11311-1 (Contig-U11311-1Q) /CSM_Contig/Contig-U11311-1Q.Seq.d
Length = 1408

Score = 2591 bits (1307), Expect = 0.0
Identities = 1337/1337 (100%)
Strand = Plus / Plus


Query: 1 aaatatataaaaattcattggaaatgatagaacttttaaaagaagatgacgctccaaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaatatataaaaattcattggaaatgatagaacttttaaaagaagatgacgctccaaaga 60


Query: 61 aaattggtcatattcaatttggtttattatcagaagatgatatagttagattatcacatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaattggtcatattcaatttggtttattatcagaagatgatatagttagattatcacatg 120


Query: 121 ttcaaattgttaatagagaattatttgatttagtaaagagaaaaccaacaccatatggtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttcaaattgttaatagagaattatttgatttagtaaagagaaaaccaacaccatatggtg 180


Query: 181 tattagataataaattgggtacaagcgataaacaagcaatgtgtacaacatgtggattaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tattagataataaattgggtacaagcgataaacaagcaatgtgtacaacatgtggattaa 240


Query: 241 gtattgtcgattgtgttggtcattttggatatattaaattacaattaccagtttttcata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtattgtcgattgtgttggtcattttggatatattaaattacaattaccagtttttcata 300


Query: 301 ttggatatttaaagaatattatgaacattttacaaatgatttgcaagagttgttcaacca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttggatatttaaagaatattatgaacattttacaaatgatttgcaagagttgttcaacca 360


Query: 361 ttctattgaatgaagagaagaaacaatattatctaagaaagatgagaaataaaaagatgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttctattgaatgaagagaagaaacaatattatctaagaaagatgagaaataaaaagatgg 420


Query: 421 ataatctacaaaggaagtcattattgaaaaagatatttttagagtgtagaaaaaccaaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ataatctacaaaggaagtcattattgaaaaagatatttttagagtgtagaaaaaccaaag 480


Query: 481 aatgtttgaaatgcggttcaaccaatggtatgattaaaaagagtggtgcattcaagatca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aatgtttgaaatgcggttcaaccaatggtatgattaaaaagagtggtgcattcaagatca 540


Query: 541 ttcatgaaaagtataaaggaaagacagagtcattgcaagactattacgcattgtatgatg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ttcatgaaaagtataaaggaaagacagagtcattgcaagactattacgcattgtatgatg 600


Query: 601 acgccattaaatacaatccagagatgaaannnnnnnnnnaaggttcaaacattaatattg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 acgccattaaatacaatccagagatgaaannnnnnnnnnaaggttcaaacattaatattg 660


Query: 661 ctcaaatgatctgttgtgtaggtcaacagattgtcaatggtactcgtattccaaatggtt 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ctcaaatgatctgttgtgtaggtcaacagattgtcaatggtactcgtattccaaatggtt 720


Query: 721 tcaccaatagaactacacccacatttcaaacattttgcaaagaatccaaaatcaaaaggt 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tcaccaatagaactacacccacatttcaaacattttgcaaagaatccaaaatcaaaaggt 780


Query: 781 ttcgtttcaaatagtttctatactggtatgattccaacagaattcttttttcacactatg 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 ttcgtttcaaatagtttctatactggtatgattccaacagaattcttttttcacactatg 840


Query: 841 ggtggtagagagggtttggtagatactgctgtaaaaactgctgaaactggttatatgcaa 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 ggtggtagagagggtttggtagatactgctgtaaaaactgctgaaactggttatatgcaa 900


Query: 901 cgtcgtctaatgaaagctttagaggatctttcaactcattatgattatactgtacgtgat 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 cgtcgtctaatgaaagctttagaggatctttcaactcattatgattatactgtacgtgat 960


Query: 961 tcaattggtggtattgttcaattcatttatggtgatgatggtttagatccagcaggtatg 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 tcaattggtggtattgttcaattcatttatggtgatgatggtttagatccagcaggtatg 1020


Query: 1021 gaagcaaaagatagacctgtagatttcctccgtgcaatgatgagtgttaaatcaactcgt 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 gaagcaaaagatagacctgtagatttcctccgtgcaatgatgagtgttaaatcaactcgt 1080


Query: 1081 caatgtagaaatgaaccagaaatgaaaccatttgaaattcgtaaactcgttgaatccatt 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 caatgtagaaatgaaccagaaatgaaaccatttgaaattcgtaaactcgttgaatccatt 1140


Query: 1141 attgacagctctaaatttgaagcttgtacagatttattcaaaaatgaaattagagttttc 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 attgacagctctaaatttgaagcttgtacagatttattcaaaaatgaaattagagttttc 1200


Query: 1201 tttaatggtaatgaaaaaacaaaaggttatattcaagaattaattagtttacgtaaacaa 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 tttaatggtaatgaaaaaacaaaaggttatattcaagaattaattagtttacgtaaacaa 1260


Query: 1261 tttaaattatcatcttttgatttaaatgataatgaagatgaaattattattgaagataat 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 tttaaattatcatcttttgatttaaatgataatgaagatgaaattattattgaagataat 1320


Query: 1321 tctccaatggatattag 1337
|||||||||||||||||
Sbjct: 1321 tctccaatggatattag 1337


Score = 105 bits (53), Expect = 1e-22
Identities = 53/53 (100%)
Strand = Plus / Plus


Query: 1356 caccaccaccactacaaataatgcagttaaaataactaatatcaccacagata 1408
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1356 caccaccaccactacaaataatgcagttaaaataactaatatcaccacagata 1408


>Contig-U13120-1 (Contig-U13120-1Q) /CSM_Contig/Contig-U13120-1Q.Seq.d
Length = 873

Score = 83.8 bits (42), Expect = 5e-16
Identities = 78/90 (86%)
Strand = Plus / Plus


Query: 819 agaattcttttttcacactatgggtggtagagagggtttggtagatactgctgtaaaaac 878
|||||||||||| || |||||||||||||||| ||||| | |||||||| ||||||||
Sbjct: 307 agaattctttttccatgctatgggtggtagagaaggtttaattgatactgccgtaaaaac 366


Query: 879 tgctgaaactggttatatgcaacgtcgtct 908
||||||| |||||||| |||||||||||
Sbjct: 367 atctgaaaccggttatattcaacgtcgtct 396


Score = 34.2 bits (17), Expect = 0.39
Identities = 41/49 (83%)
Strand = Plus / Plus


Query: 674 ttgtgtaggtcaacagattgtcaatggtactcgtattccaaatggtttc 722
||||||||||||||| | |||| | |||| ||||||||| |||||||
Sbjct: 163 ttgtgtaggtcaacaaaatgtcgaaggtaaacgtattccatttggtttc 211


>Contig-U03257-1 (Contig-U03257-1Q) /CSM_Contig/Contig-U03257-1Q.Seq.d
Length = 1271

Score = 40.1 bits (20), Expect = 0.006
Identities = 23/24 (95%)
Strand = Plus / Plus


Query: 774 aaaaggtttcgtttcaaatagttt 797
||||||||| ||||||||||||||
Sbjct: 1060 aaaaggtttggtttcaaatagttt 1083


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 23,901
Number of Sequences: 6905
Number of extensions: 23901
Number of successful extensions: 2682
Number of sequences better than 10.0: 319
length of query: 1408
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1392
effective length of database: 5,564,391
effective search space: 7745632272
effective search space used: 7745632272
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.23
Homology vs DNA
Query= Contig-U11311-1 (Contig-U11311-1Q) /CSM_Contig/Contig-U11311-1Q.Seq.d
(1408 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ356076) Dictyostelium discoideum cDNA clone:dda59m03, 3' ... 1283 0.0 2
(BJ337845) Dictyostelium discoideum cDNA clone:dda59n03, 5' ... 1219 0.0 1
(BJ394751) Dictyostelium discoideum cDNA clone:dds36h11, 5' ... 1213 0.0 1
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 1187 0.0 3
(BJ406759) Dictyostelium discoideum cDNA clone:dds36h11, 3' ... 1187 0.0 4
(BJ406028) Dictyostelium discoideum cDNA clone:dds33l20, 3' ... 1187 0.0 3
(BJ405585) Dictyostelium discoideum cDNA clone:dds32n06, 3' ... 1187 0.0 3
(BJ403370) Dictyostelium discoideum cDNA clone:dds24m19, 3' ... 1187 0.0 3
(BJ350528) Dictyostelium discoideum cDNA clone:dda40l05, 3' ... 1179 0.0 3
(BJ394129) Dictyostelium discoideum cDNA clone:dds33l20, 5' ... 1104 0.0 3
(BJ332874) Dictyostelium discoideum cDNA clone:dda40l05, 5' ... 1104 0.0 1
(BJ393676) Dictyostelium discoideum cDNA clone:dds32n06, 5' ... 985 0.0 1
(BJ391715) Dictyostelium discoideum cDNA clone:dds24m19, 5' ... 971 0.0 1
(BJ353837) Dictyostelium discoideum cDNA clone:dda51h18, 3' ... 795 0.0 2
(BJ381024) Dictyostelium discoideum cDNA clone:ddc40h04, 3' ... 955 0.0 1
(BJ351581) Dictyostelium discoideum cDNA clone:dda43o22, 3' ... 771 0.0 1
(BJ335801) Dictyostelium discoideum cDNA clone:dda51h18, 5' ... 272 3e-68 1
(DY886004) CeleSEQ1473 Cunninghamella elegans pBluescript (E... 64 6e-24 4
(DY891356) CeleSEQ10021 Cunninghamella elegans pBluescript (... 64 9e-24 4
(DY886551) CeleSEQ2247 Cunninghamella elegans pBluescript (E... 64 2e-21 4
(BB970968) Plasmodium berghei strain ANKA cDNA clone:OK00062... 68 2e-20 5
(AZ522640) 209PbB03 Pb MBN #21 Plasmodium berghei genomic 3'... 68 7e-20 4
(ES469195) PD-B02 Brachionus plicatilis NHIL unnormalized cD... 94 2e-14 1
(BJ979796) Brachionus plicatilis NH1L mRNA, clone: BpA0327, ... 94 2e-14 1
(AC185143) Nasonia vitripennis BAC NV_Bb-44F11 (Clemson Uni... 84 3e-14 2
(EF014381) Mucor hiemalis RNA polymerase II largest subunit ... 92 5e-14 2
(EF014394) Neocallimastix frontalis RNA polymerase II larges... 92 7e-14 1
(DQ294611) Neocallimastix sp. GE13 isolate AFTOL-ID 638 RNA ... 92 7e-14 1
(CZ537561) SRAA-aad14a06.g1 Strongyloides ratti whole genome... 86 2e-13 2
(DQ657145) Stomoxys calcitrans RNA polymerase subunit II (rp... 78 4e-13 2
(BM169260) EST571783 PyBS Plasmodium yoelii yoelii cDNA clon... 88 5e-13 2
(BM167237) EST569760 PyBS Plasmodium yoelii yoelii cDNA clon... 88 6e-13 2
(AJ719836) Gallus gallus mRNA for hypothetical protein, clon... 88 1e-12 1
(BH136559) ENTPA61TF Entamoeba histolytica Sheared DNA Entam... 88 1e-12 1
(CX094583) EHAG131TR E. histolytica Normalized cDNA library ... 88 1e-12 1
(CX087586) EHAD229TR E. histolytica Normalized cDNA library ... 88 1e-12 1
(CX084677) EHABU25TR E. histolytica Normalized cDNA library ... 88 1e-12 1
(AJ734316) Gallus gallus EST, clone 7b9s3. 88 1e-12 1
(AJ734310) Gallus gallus EST, clone 7b9r5. 88 1e-12 1
(BJ368656) Dictyostelium discoideum cDNA clone:ddc47h15, 5' ... 78 2e-12 2
(AY490564) Psilotum nudum RNA polymerase III large subunit (... 46 3e-12 4
(EF014384) Gigaspora gigantea RNA polymerase II largest subu... 86 4e-12 1
(U10336) Helobdella stagnalis RNA polymerase II largest subu... 84 2e-11 1
(BJ419646) Dictyostelium discoideum cDNA clone:ddv36b21, 5' ... 84 2e-11 1
(BJ393569) Dictyostelium discoideum cDNA clone:dds31e20, 5' ... 84 2e-11 1
(BJ370180) Dictyostelium discoideum cDNA clone:ddc53n05, 5' ... 84 2e-11 1
(EU677580) Chauliognathus opacus RNA polymerase II large sub... 82 7e-11 1
(DQ657188) Scathophaga taeniopa RNA polymerase subunit II (r... 82 7e-11 1
(DQ657184) Scathophaga lutaria RNA polymerase subunit II (rp... 82 7e-11 1
(BI507095) BB170027B20H07.5 Bee Brain Normalized/Subtracted ... 82 7e-11 1
(U90043) Triops longicaudatus RNA polymerase II largest subu... 60 9e-11 2
(AM625364) Entamoeba dispar GSS, clone dispar117d05.q1k. 80 3e-10 1
(EK413117) 1095505214240 Global-Ocean-Sampling_GS-31-01-01-1... 52 7e-10 2
(DQ294604) Scutellospora heterogama isolate AFTOL-ID 138 RNA... 78 1e-09 1
(DQ657147) Mesembrina mystacea RNA polymerase subunit II (rp... 78 1e-09 1
(CT894284) Phaeodactylum tricornutum 5-PRIME EST from clone ... 78 1e-09 1
(DQ657178) Pogonota sahlbergi RNA polymerase subunit II (rpo... 66 1e-09 2
(DQ657175) Norellia tipularia RNA polymerase subunit II (rpo... 66 1e-09 2
(DQ657177) Pogonota barbata RNA polymerase subunit II (rpolI... 66 1e-09 2
(M73770) P.falciparum RNA polymerase III largest subunit gen... 72 1e-09 2
(AF395835) Cercomonas ATCC50319 RNA polymerase II largest su... 70 2e-09 2
(AZ685606) ENTKS05TR Entamoeba histolytica Sheared DNA Entam... 76 4e-09 1
(EJ543627) 1092955417144 Global-Ocean-Sampling_GS-29-01-01-1... 46 8e-09 3
(EJ533867) 1092955247404 Global-Ocean-Sampling_GS-29-01-01-1... 46 2e-08 3
(DQ294600) Boothiomyces macroporosum isolate AFTOL-ID 689 RN... 74 2e-08 1
(EU677592) Bembidion mandibulare RNA polymerase II large sub... 74 2e-08 1
(DQ657190) Scathophaga tropicalis RNA polymerase subunit II ... 74 2e-08 1
(DQ657187) Scathophaga suilla RNA polymerase subunit II (rpo... 74 2e-08 1
(DQ657185) Scathophaga pictipennis RNA polymerase subunit II... 74 2e-08 1
(DQ657182) Scathophaga furcata RNA polymerase subunit II (rp... 74 2e-08 1
(DQ657181) Scathophaga cineraria RNA polymerase subunit II (... 74 2e-08 1
(DQ657180) Scathophaga calida RNA polymerase subunit II (rpo... 74 2e-08 1
(DQ657157) Cordilura ontario RNA polymerase subunit II (rpol... 74 2e-08 1
(DQ657156) Cordilura latifrons RNA polymerase subunit II (rp... 74 2e-08 1
(DQ657155) Cordilura dimidiata RNA polymerase subunit II (rp... 74 2e-08 1
(DQ657154) Cordilura ciliata RNA polymerase subunit II (rpol... 74 2e-08 1
(DQ657146) Lasiomma seminitidum RNA polymerase subunit II (r... 74 2e-08 1
(DQ657150) Cleigastra apicalis RNA polymerase subunit II (rp... 58 2e-08 2
(CZ291069) cp73e12.r Candida parapsilosis Random Genomic Lib... 52 3e-08 2
(AR548823) Sequence 3954 from patent US 6747137. 54 4e-08 2
(AX489152) Sequence 6452 from Patent WO02053728. 54 5e-08 2
(AL844509) Plasmodium falciparum chromosome 13. 72 6e-08 1
(AL049185) Plasmodium falciparum DNA *** SEQUENCING IN PROGR... 72 6e-08 1
(U90037) Limulus polyphemus RNA polymerase II largest subuni... 70 2e-07 1
(EU153428) Rhabditis sp. SB347 RNA polymerase 2 gene, partia... 70 2e-07 1
(DQ657148) Americina adusta RNA polymerase subunit II (rpolI... 70 2e-07 1
(AF138978) Eumesocampa frigilis RNA polymerase II largest su... 70 2e-07 1
(BW529113) Ciona savignyi cDNA, clone:cslv010d05, 5'end, sin... 70 2e-07 1
(BW520885) Ciona savignyi cDNA, clone:csga060j09, 5'end, sin... 70 2e-07 1
(AF139011) Tomocerus sp. 'Tom' RNA polymerase II largest sub... 66 3e-07 2
(DQ986829) Porpidia speirea isolate AFTOL 1050 RNA polymeras... 56 3e-07 2
(EU153431) Oscheius dolichuroides strain DF5018 RNA polymera... 58 3e-07 2
(CU440733) Clytia hemisphaerica 5-PRIME EST from clone SA0AA... 60 3e-07 2
(AL421072) T3 end of clone AY0AA009H06 of library AY0AA from... 58 6e-07 2
(AM481444) Vitis vinifera contig VV78X144362.4, whole genome... 68 1e-06 1
(AY604469) Prodontorhabditis wirthi strain DF5074 RNA polyme... 68 1e-06 1
(CU749291) A BAC library has been constructed from PN40024 g... 68 1e-06 1
(CT490160) A BAC library has been constructed from cultivar ... 68 1e-06 1
(BA000001) Pyrococcus horikoshii OT3 DNA, complete genome. 68 1e-06 1
(AX489341) Sequence 6641 from Patent WO02053728. 64 3e-06 2

>(BJ356076) Dictyostelium discoideum cDNA clone:dda59m03, 3' end,
single read.
Length = 719

Score = 1283 bits (647), Expect(2) = 0.0
Identities = 647/647 (100%)
Strand = Plus / Minus


Query: 691 ttgtcaatggtactcgtattccaaatggtttcaccaatagaactacacccacatttcaaa 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 ttgtcaatggtactcgtattccaaatggtttcaccaatagaactacacccacatttcaaa 660


Query: 751 cattttgcaaagaatccaaaatcaaaaggtttcgtttcaaatagtttctatactggtatg 810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 cattttgcaaagaatccaaaatcaaaaggtttcgtttcaaatagtttctatactggtatg 600


Query: 811 attccaacagaattcttttttcacactatgggtggtagagagggtttggtagatactgct 870
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 attccaacagaattcttttttcacactatgggtggtagagagggtttggtagatactgct 540


Query: 871 gtaaaaactgctgaaactggttatatgcaacgtcgtctaatgaaagctttagaggatctt 930
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 gtaaaaactgctgaaactggttatatgcaacgtcgtctaatgaaagctttagaggatctt 480


Query: 931 tcaactcattatgattatactgtacgtgattcaattggtggtattgttcaattcatttat 990
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 tcaactcattatgattatactgtacgtgattcaattggtggtattgttcaattcatttat 420


Query: 991 ggtgatgatggtttagatccagcaggtatggaagcaaaagatagacctgtagatttcctc 1050
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 ggtgatgatggtttagatccagcaggtatggaagcaaaagatagacctgtagatttcctc 360


Query: 1051 cgtgcaatgatgagtgttaaatcaactcgtcaatgtagaaatgaaccagaaatgaaacca 1110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 cgtgcaatgatgagtgttaaatcaactcgtcaatgtagaaatgaaccagaaatgaaacca 300


Query: 1111 tttgaaattcgtaaactcgttgaatccattattgacagctctaaatttgaagcttgtaca 1170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tttgaaattcgtaaactcgttgaatccattattgacagctctaaatttgaagcttgtaca 240


Query: 1171 gatttattcaaaaatgaaattagagttttctttaatggtaatgaaaaaacaaaaggttat 1230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 gatttattcaaaaatgaaattagagttttctttaatggtaatgaaaaaacaaaaggttat 180


Query: 1231 attcaagaattaattagtttacgtaaacaatttaaattatcatcttttgatttaaatgat 1290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 attcaagaattaattagtttacgtaaacaatttaaattatcatcttttgatttaaatgat 120


Query: 1291 aatgaagatgaaattattattgaagataattctccaatggatattag 1337
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 aatgaagatgaaattattattgaagataattctccaatggatattag 73

Score = 75.8 bits (38), Expect(2) = 0.0
Identities = 38/38 (100%)
Strand = Plus / Minus


Query: 1371 aaataatgcagttaaaataactaatatcaccacagata 1408
||||||||||||||||||||||||||||||||||||||
Sbjct: 39 aaataatgcagttaaaataactaatatcaccacagata 2

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,793,783,311
Number of extensions: 111350196
Number of successful extensions: 8895039
Number of sequences better than 10.0: 443
Length of query: 1408
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1384
Effective length of database: 97,308,875,965
Effective search space: 134675484335560
Effective search space used: 134675484335560
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.29
Homology vs Protein
Query= Contig-U11311-1 (Contig-U11311-1Q) /CSM_Contig/Contig-U11311-1Q.Seq.d
(1408 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(Q86AQ5) RecName: Full=DNA-directed RNA polymerase III subunit r... 413 e-114
(Q5ZL98) RecName: Full=DNA-directed RNA polymerase III subunit R... 196 2e-48
(O14802) RecName: Full=DNA-directed RNA polymerase III subunit R... 196 2e-48
AY091461_1(AY091461|pid:none) Homo sapiens RNA polymerase III su... 196 2e-48
AF021351_1(AF021351|pid:none) Homo sapiens RNA polymerase III la... 196 2e-48
BC151002_1(BC151002|pid:none) Mus musculus polymerase (RNA) III ... 195 4e-48
(A4IF62) RecName: Full=DNA-directed RNA polymerase III subunit R... 194 6e-48
CP000582_96(CP000582|pid:none) Ostreococcus lucimarinus CCE9901 ... 186 2e-45
AY091459_1(AY091459|pid:none) Homo sapiens RNA polymerase III su... 182 3e-44
BC044092_1(BC044092|pid:none) Xenopus laevis polymerase (RNA) II... 181 7e-44
AY490561_1(AY490561|pid:none) Cycas revoluta RNA polymerase III ... 179 2e-43
FM992691_623(FM992691|pid:none) Candida dubliniensis CD36 chromo... 176 2e-42
AY490562_1(AY490562|pid:none) Zamia muricata RNA polymerase III ... 175 4e-42
AK120935_1(AK120935|pid:none) Oryza sativa Japonica Group cDNA c... 175 4e-42
AB025334_1(AB025334|pid:none) Lethenteron reissneri mRNA for RNA... 174 7e-42
AP007167_530(AP007167|pid:none) Aspergillus oryzae RIB40 genomic... 174 9e-42
AE016818_594(AE016818|pid:none) Ashbya gossypii (= Eremothecium ... 172 2e-41
DQ294587_1(DQ294587|pid:none) Cladochytrium replicatum isolate A... 143 3e-41
AY490558_1(AY490558|pid:none) Taxus canadensis RNA polymerase II... 171 4e-41
CU928178_415(CU928178|pid:none) Zygosaccharomyces rouxii strain ... 170 1e-40
FN392322_309(FN392322|pid:none) Pichia pastoris GS115 chromosome... 170 1e-40
(P04051) RecName: Full=DNA-directed RNA polymerase III subunit R... 169 2e-40
AY490559_1(AY490559|pid:none) Podocarpus macrophyllus RNA polyme... 168 4e-40
(P08968) RecName: Full=DNA-directed RNA polymerase III subunit R... 143 1e-38
AY490555_1(AY490555|pid:none) Welwitschia mirabilis RNA polymera... 162 2e-38
AE017346_41(AE017346|pid:none) Cryptococcus neoformans var. neof... 162 2e-38
DQ294585_1(DQ294585|pid:none) Hyaloraphidium curvatum isolate AF... 137 2e-38
T34157(T34157)hypothetical protein C42D4.8 - Caenorhabditis eleg... 162 3e-38
AF395110_1(AF395110|pid:none) Naegleria gruberi RNA polymerase I... 132 4e-38
CR382129_619(CR382129|pid:none) Yarrowia lipolytica strain CLIB1... 133 5e-38
DQ294590_1(DQ294590|pid:none) Entomophthora muscae isolate AFTOL... 135 7e-38
AF315822_1(AF315822|pid:none) Monoblepharis macrandra DNA-depend... 135 9e-38
U90210_1(U90210|pid:none) Spirogyra sp. RNA polymerase II larges... 132 9e-38
EU543192_1(EU543192|pid:none) Saruma henryi RNA polymerase II la... 132 1e-37
DQ782820_1(DQ782820|pid:none) Physcia aipolia isolate AFTOL-ID 8... 137 2e-37
DQ294600_1(DQ294600|pid:none) Boothiomyces macroporosum isolate ... 134 2e-37
AP008211_298(AP008211|pid:none) Oryza sativa (japonica cultivar-... 130 2e-37
AC084218_10(AC084218|pid:none) Oryza sativa (japonica cultivar-g... 130 2e-37
AY490552_1(AY490552|pid:none) Podocarpus macrophyllus RNA polyme... 133 2e-37
AY490550_1(AY490550|pid:none) Thuja occidentalis RNA polymerase ... 133 2e-37
AY490554_1(AY490554|pid:none) Ephedra viridis RNA polymerase II ... 133 2e-37
AY490551_1(AY490551|pid:none) Taxus canadensis RNA polymerase II... 133 2e-37
AY857979_1(AY857979|pid:none) Calostoma cinnabarinum isolate AFT... 133 3e-37
DQ986831_1(DQ986831|pid:none) Psora rubiformis isolate AFTOL 219... 136 3e-37
AF519537_1(AF519537|pid:none) Welwitschia mirabilis RNA polymera... 132 3e-37
FJ772242_1(FJ772242|pid:none) Opegrapha varia strain AFTOL881 RN... 136 3e-37
DQ294602_1(DQ294602|pid:none) Paraglomus occultum isolate AFTOL-... 134 3e-37
DQ223185_1(DQ223185|pid:none) Glaucocystis nostochinearum strain... 130 4e-37
CP000590_138(CP000590|pid:none) Ostreococcus lucimarinus CCE9901... 131 4e-37
DQ782827_1(DQ782827|pid:none) Mycoblastus sanguinarius isolate A... 135 4e-37
DQ782831_1(DQ782831|pid:none) Umbilicaria mammulata isolate AFTO... 135 4e-37
DQ782858_1(DQ782858|pid:none) Pleopsidium chlorophanum isolate A... 135 4e-37
DQ973052_1(DQ973052|pid:none) Ophioparma lapponica isolate AFTOL... 135 4e-37
DQ782854_1(DQ782854|pid:none) Hypocenomyce scalaris isolate AFTO... 135 6e-37
DQ782857_1(DQ782857|pid:none) Lichinella iodopulchra isolate AFT... 135 6e-37
DQ912363_1(DQ912363|pid:none) Platismatia glauca isolate AFTOL-I... 135 6e-37
DQ986850_1(DQ986850|pid:none) Aspicilia cinerea isolate AFTOL 64... 135 6e-37
DQ973068_1(DQ973068|pid:none) Xanthoria elegans isolate AFTOL-ID... 135 6e-37
DQ883744_1(DQ883744|pid:none) Anaptychia palmatula isolate AFTOL... 134 7e-37
AF519542_1(AF519542|pid:none) Psilotum nudum RNA polymerase II l... 129 7e-37
EU543188_1(EU543188|pid:none) Nicotiana tabacum RNA polymerase I... 131 7e-37
DQ020643_1(DQ020643|pid:none) Antirrhinum majus RNA polymerase I... 131 7e-37
DQ020644_1(DQ020644|pid:none) Lycopersicon esculentum RNA polyme... 131 7e-37
U90041_1(U90041|pid:none) Pedetontus saltator RNA polymerase II ... 128 7e-37
FJ358416_1(FJ358416|pid:none) Xeromyces bisporus isolate CBS 236... 135 7e-37
AF139011_1(AF139011|pid:none) Tomocerus sp. 'Tom' RNA polymerase... 128 7e-37
AY305604_1(AY305604|pid:none) Podura aquatica clone PaqApol RNA ... 128 7e-37
DQ782829_1(DQ782829|pid:none) Lecanora hybocarpa isolate AFTOL-I... 134 1e-36
EU543183_1(EU543183|pid:none) Beta vulgaris RNA polymerase II la... 130 1e-36
AF519541_1(AF519541|pid:none) Amborella trichopoda RNA polymeras... 130 1e-36
EU543186_1(EU543186|pid:none) Illicium parviflorum RNA polymeras... 130 1e-36
EU543184_1(EU543184|pid:none) Ceratophyllum demersum RNA polymer... 130 1e-36
EU543189_1(EU543189|pid:none) Papaver orientale RNA polymerase I... 130 1e-36
AF519539_1(AF519539|pid:none) Magnolia x soulangeana RNA polymer... 130 1e-36
DQ912356_1(DQ912356|pid:none) Cetraria islandica isolate AFTOL-I... 134 1e-36
DQ912374_1(DQ912374|pid:none) Degelia plumbea isolate AFTOL-ID 1... 134 1e-36
DQ883737_1(DQ883737|pid:none) Pseudocyphellaria anomala isolate ... 134 1e-36
DQ912358_1(DQ912358|pid:none) Hypotrachyna caraccensis isolate A... 134 1e-36
DQ912354_1(DQ912354|pid:none) Candelariella reflexa isolate AFTO... 134 1e-36
DQ973053_1(DQ973053|pid:none) Asahinea scholanderi isolate AFTOL... 134 1e-36
DQ973061_1(DQ973061|pid:none) Nephroma parile isolate AFTOL-ID 1... 134 1e-36
FJ772241_1(FJ772241|pid:none) Arthonia caesia strain AFTOL775 RN... 133 1e-36
DQ912359_1(DQ912359|pid:none) Hypotrachyna degelii isolate AFTOL... 134 1e-36
DQ294584_1(DQ294584|pid:none) Polychytrium aggregatum isolate AF... 133 1e-36
AF519540_1(AF519540|pid:none) Nymphaea odorata RNA polymerase II... 130 1e-36
DQ883778_1(DQ883778|pid:none) Flavoparmelia caperata isolate AFT... 134 1e-36
AF519538_1(AF519538|pid:none) Zea mays RNA polymerase II largest... 130 1e-36
DQ883739_1(DQ883739|pid:none) Lobariella pallida isolate AFTOL-I... 134 1e-36
DQ973049_1(DQ973049|pid:none) Myelochroa aurulenta isolate AFTOL... 134 1e-36
FJ358380_1(FJ358380|pid:none) Phialophora europaea isolate CBS 1... 129 1e-36
DQ294611_1(DQ294611|pid:none) Neocallimastix sp. GE13 isolate AF... 132 1e-36
AY305566_1(AY305566|pid:none) Harbansus paucichelatus clone Hapa... 126 1e-36
X52494_1(X52494|pid:none) Arabidopsis thaliana RPB1 gene for the... 130 2e-36
X52954_1(X52954|pid:none) Arabidopsis thaliana rpII gene for RNA... 130 2e-36
JDMU1(T04690;S12071;S27346;S11960)DNA-directed RNA polymerase (E... 130 2e-36
T43217(T43217) RNA polymerase (EC 2.7.7.-) II, largest chain - P... 134 2e-36
FJ358409_1(FJ358409|pid:none) Chromocleista malachitea isolate C... 134 2e-36
AY305589_1(AY305589|pid:none) Mesocyclops edax clone MesoApol RN... 129 2e-36
AF138990_1(AF138990|pid:none) Machiloides banksi RNA polymerase ... 127 2e-36
DQ782853_1(DQ782853|pid:none) Agonimia sp. AFTOL 684 RNA polymer... 133 2e-36
DQ912355_1(DQ912355|pid:none) Lecidea fuscoatra isolate AFTOL-ID... 133 2e-36
DQ782828_1(DQ782828|pid:none) Pertusaria dactylina isolate AFTOL... 133 2e-36
DQ294595_1(DQ294595|pid:none) Mortierella verticillata isolate A... 131 2e-36
DQ912369_1(DQ912369|pid:none) Phaeophyscia orbicularis isolate A... 134 2e-36
EF413602_1(EF413602|pid:none) Polyblastia melaspora isolate AFTO... 133 2e-36
EF689759_1(EF689759|pid:none) Neocatapyrenium rhizinosum isolate... 133 2e-36
EF689813_1(EF689813|pid:none) Verrucaria tristis isolate AFTOL-I... 133 2e-36
DQ973050_1(DQ973050|pid:none) Cetradonia sp. AFTOL 1657 RNA poly... 134 2e-36
EF689768_1(EF689768|pid:none) Placidium squamulosum isolate AFTO... 133 2e-36
FJ358412_1(FJ358412|pid:none) Leiothecium ellipsoideum isolate C... 133 2e-36
CR932236_1(CR932236|pid:none) DNA-directed RNA polymerase III la... 119 3e-36
DQ782821_1(DQ782821|pid:none) Dermatocarpon miniatum isolate AFT... 133 3e-36
DQ840552_1(DQ840552|pid:none) Endocarpon pallidulum isolate AFTO... 133 3e-36
DQ840557_1(DQ840557|pid:none) Ramichloridium anceps isolate AFTO... 131 3e-36
EF689798_1(EF689798|pid:none) Verrucaria hydrela isolate AFTOL-I... 133 3e-36
EF689758_1(EF689758|pid:none) Heteroplacidium imbricatum isolate... 133 3e-36
EF689804_1(EF689804|pid:none) Verrucaria mucosa isolate AFTOL-ID... 133 3e-36
EF689751_1(EF689751|pid:none) Dermatocarpon luridum isolate AFTO... 133 3e-36
EF689780_1(EF689780|pid:none) Staurothele immersa isolate AFTOL-... 133 3e-36
EF689776_1(EF689776|pid:none) Endocarpon diffractellum isolate A... 133 3e-36
EF689756_1(EF689756|pid:none) Endocarpon pusillum isolate AFTOL-... 133 3e-36
EF689796_1(EF689796|pid:none) Verrucaria hochstetteri isolate AF... 133 3e-36
EF689793_1(EF689793|pid:none) Verrucaria dufourii isolate AFTOL-... 133 3e-36
EF689775_1(EF689775|pid:none) Staurothele areolata isolate AFTOL... 133 3e-36
EF689755_1(EF689755|pid:none) Endocarpon psorodeum isolate AFTOL... 133 3e-36
EF689792_1(EF689792|pid:none) Verrucaroa dolosa isolate AFTOL-ID... 133 3e-36
EF689753_1(EF689753|pid:none) Endocarpon adscendens isolate AFTO... 133 3e-36
EF689761_1(EF689761|pid:none) Placidiopsis cinerascens isolate A... 133 3e-36
DQ840555_1(DQ840555|pid:none) Exophiala dermatitidis isolate AFT... 131 3e-36
DQ973056_1(DQ973056|pid:none) Buellia dialyta isolate AFTOL-ID 5... 134 3e-36
FJ358361_1(FJ358361|pid:none) Capronia sp. WUC 102 RNA polymeras... 131 3e-36
EF413605_1(EF413605|pid:none) Capronia munkii isolate AFTOL-ID 6... 131 3e-36
FJ358394_1(FJ358394|pid:none) Chaetothyriales sp. TRN488 RNA pol... 132 3e-36
EF689769_1(EF689769|pid:none) Placidium sp. isolate AFTOL-ID 223... 133 3e-36
EF689800_1(EF689800|pid:none) Verrucaria lecideoides isolate AFT... 133 3e-36
EF689781_1(EF689781|pid:none) Thelidium decipiens isolate AFTOL-... 133 3e-36
EF689747_1(EF689747|pid:none) Catapyrenium cinereum isolate AFTO... 133 3e-36
U90040_1(U90040|pid:none) Periplaneta americana RNA polymerase I... 126 3e-36
AY305596_1(AY305596|pid:none) Nicoletia meinerti clone NmeApol R... 126 3e-36
FN357492_16(FN357492|pid:none) Schistosoma mansoni genome sequen... 155 3e-36
AM269986_4(AM269986|pid:none) Aspergillus niger contig An01c0390... 132 4e-36
EF689787_1(EF689787|pid:none) Verrucaria canella isolate AFTOL-I... 132 4e-36
EF689772_1(EF689772|pid:none) Placopyrenium bucekii isolate AFTO... 132 4e-36
EF689807_1(EF689807|pid:none) Verrucaria polysticta isolate AFTO... 132 4e-36
FJ358404_1(FJ358404|pid:none) Arachniotus littoralis isolate CBS... 132 4e-36
FJ358413_1(FJ358413|pid:none) Leucothecium emdenii isolate CBS 5... 132 4e-36
EF689809_1(EF689809|pid:none) Bagliettoa steineri isolate AFTOL-... 132 4e-36
FJ358367_1(FJ358367|pid:none) Cladophialophora minourae isolate ... 131 4e-36
FJ358363_1(FJ358363|pid:none) Capronia sp. WUC 315 RNA polymeras... 131 4e-36
FJ358360_1(FJ358360|pid:none) Capronia sp. WUC 26 RNA polymerase... 131 4e-36
EF689795_1(EF689795|pid:none) Verrucaria fuscella isolate AFTOL-... 132 4e-36
FJ358392_1(FJ358392|pid:none) Chaetothyriales sp. TRN475 RNA pol... 132 4e-36
FJ358411_1(FJ358411|pid:none) Gymnoascus reesii isolate CBS 259.... 132 4e-36
AF138978_1(AF138978|pid:none) Eumesocampa frigilis RNA polymeras... 125 4e-36
AY305581_1(AY305581|pid:none) Lynceus sp. JCR-2003 RNA polymeras... 125 4e-36
DQ883745_1(DQ883745|pid:none) Pyxine subcinerea isolate AFTOL-ID... 134 5e-36
AF519535_1(AF519535|pid:none) Cycas revoluta RNA polymerase II l... 131 5e-36
DQ912364_1(DQ912364|pid:none) Punctelia hypoleucites isolate AFT... 132 5e-36
EF689782_1(EF689782|pid:none) Thelidium decipiens isolate AFTOL-... 133 5e-36
EF689817_1(EF689817|pid:none) Verrucula granulosaria isolate AFT... 132 5e-36
EF689749_1(EF689749|pid:none) Clavascidium umbrinum isolate AFTO... 132 5e-36
EF689821_1(EF689821|pid:none) Verrucula inconnexaria isolate AFT... 132 5e-36
EF689820_1(EF689820|pid:none) Verrucula inconnexaria isolate AFT... 132 5e-36
EF689744_1(EF689744|pid:none) Bagliettoa baldensis isolate AFTOL... 132 5e-36
FJ358405_1(FJ358405|pid:none) Arachnomyces glareosus isolate CBS... 132 5e-36
FJ358410_1(FJ358410|pid:none) Eremascus albus isolate CBS 975.69... 131 5e-36
EF689765_1(EF689765|pid:none) Placidium lacinulatum isolate AFTO... 132 5e-36
FN357485_10(FN357485|pid:none) Schistosoma mansoni genome sequen... 127 6e-36
EU543182_1(EU543182|pid:none) Asparagus officinalis RNA polymera... 128 6e-36
DQ883741_1(DQ883741|pid:none) Heterodermia vulgaris isolate AFTO... 132 6e-36
FJ358358_1(FJ358358|pid:none) Capronia semiimmersa isolate AFTOL... 132 6e-36
FJ358366_1(FJ358366|pid:none) Cladophialophora carrionii isolate... 132 6e-36
AY305616_1(AY305616|pid:none) Skogsbergia lerneri clone SkleApol... 126 6e-36
(P36594) RecName: Full=DNA-directed RNA polymerase II subunit rp... 127 8e-36
EF689770_1(EF689770|pid:none) Placocarpus schaereri isolate AFTO... 131 8e-36
AM183921_1(AM183921|pid:none) Geosiphon pyriformis partial RPB1 ... 130 8e-36
AF139008_1(AF139008|pid:none) Speleonectes tulumensis RNA polyme... 124 8e-36
AY860526_1(AY860526|pid:none) Marasmius alliaceus isolate AFTOL-... 128 8e-36
BT031343_1(BT031343|pid:none) Drosophila melanogaster RE30267 fu... 124 1e-35
Y18879_1(Y18879|pid:none) Drosophila pseudoobscura RpII215 gene. 124 1e-35
EF689784_1(EF689784|pid:none) Thelidium papulare isolate AFTOL-I... 133 1e-35
EF689815_1(EF689815|pid:none) Verrucula biatorinaria isolate AFT... 132 1e-35
FJ358397_1(FJ358397|pid:none) Chaetothyriales sp. TRN506 RNA pol... 129 1e-35
DQ986829_2(DQ986829|pid:none) Porpidia speirea isolate AFTOL 105... 133 1e-35
EU677583_1(EU677583|pid:none) Dineutes sublineatus RNA polymeras... 124 1e-35
AY305538_1(AY305538|pid:none) Anopsobius neozelandicus clone Ane... 126 1e-35
AY305624_1(AY305624|pid:none) Trachyiulus nordquisti clone TnorB... 126 1e-35
A34092(A34092) DNA-directed RNA polymerase (EC 2.7.7.6) II large... 125 1e-35
(P35074) RecName: Full=DNA-directed RNA polymerase II subunit RP... 125 1e-35
AB095187_1(AB095187|pid:none) Cyanidioschyzon merolae gene for D... 127 1e-35
DQ782860_1(DQ782860|pid:none) Acarospora laqueata isolate AFTOL-... 130 1e-35
DQ294589_1(DQ294589|pid:none) Basidiobolus ranarum isolate AFTOL... 129 1e-35
U90037_1(U90037|pid:none) Limulus polyphemus RNA polymerase II l... 126 1e-35
EU677585_1(EU677585|pid:none) Amphizoa lecontei RNA polymerase I... 124 1e-35
EU677591_1(EU677591|pid:none) Bembidion umbratum RNA polymerase ... 124 1e-35
EU677592_1(EU677592|pid:none) Bembidion mandibulare RNA polymera... 124 1e-35
EU677589_1(EU677589|pid:none) Bembidion transversale RNA polymer... 124 1e-35
EU677587_1(EU677587|pid:none) Asaphidion yukonense RNA polymeras... 124 1e-35
EU677584_1(EU677584|pid:none) Macrogyrus oblongus RNA polymerase... 124 1e-35
EU677595_1(EU677595|pid:none) Bembidion inaequale RNA polymerase... 124 1e-35
AF241005_1(AF241005|pid:none) Hadrurus arizonensis RNA polymeras... 126 1e-35
EU677596_1(EU677596|pid:none) Bembidion integrum RNA polymerase ... 124 1e-35
AF138984_1(AF138984|pid:none) Hutchinsoniella macracantha RNA po... 124 1e-35
AY305544_1(AY305544|pid:none) Argulus sp. Arg2 RNA polymerase II... 124 1e-35
EF689812_1(EF689812|pid:none) Verrucaria weddellii isolate AFTOL... 133 2e-35
EF689803_1(EF689803|pid:none) Verrucaria maura isolate AFTOL-ID ... 133 2e-35
EF689805_1(EF689805|pid:none) Verrucaria muralis isolate AFTOL-I... 130 2e-35
EF689754_1(EF689754|pid:none) Endocarpon petrolepideum isolate A... 133 2e-35
FJ358407_1(FJ358407|pid:none) Ascosphaera colubrina isolate CBS ... 129 2e-35
DQ782825_1(DQ782825|pid:none) Roccella fuciformis isolate AFTOL-... 130 2e-35
DQ840558_1(DQ840558|pid:none) Pyrenula pseudobufonia isolate AFT... 129 2e-35
AF138973_1(AF138973|pid:none) Ctenolepisma lineata RNA polymeras... 123 2e-35
U90042_1(U90042|pid:none) Scutigera coleoptrata RNA polymerase I... 125 2e-35
AY305619_1(AY305619|pid:none) Thereuonema sp. JCR-2003 RNA polym... 125 2e-35
EF689771_1(EF689771|pid:none) Placopyrenium bucekii1 isolate AFT... 132 3e-35
FJ358400_1(FJ358400|pid:none) Chaetothyriales sp. TRN531 RNA pol... 129 3e-35
FJ358388_1(FJ358388|pid:none) Chaetothyriales sp. TRN210 RNA pol... 129 3e-35
DQ294582_1(DQ294582|pid:none) Rozella allomycis isolate AFTOL-ID... 127 3e-35
AY864870_1(AY864870|pid:none) Fomitiporia mediterranea isolate A... 128 3e-35
A45597(A45597)DNA-directed RNA polymerase (EC 2.7.7.6) III large... 152 4e-35
(P27625) RecName: Full=DNA-directed RNA polymerase III subunit R... 152 4e-35
AL844509_288(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 152 4e-35
DQ973059_1(DQ973059|pid:none) Ramalina complanata isolate AFTOL-... 130 4e-35
FJ358377_1(FJ358377|pid:none) Exophiala xenobiotica isolate CBS ... 127 4e-35
AF138996_1(AF138996|pid:none) Nebalia hessleri RNA polymerase II... 122 4e-35
AY305559_1(AY305559|pid:none) Eurypauropus spinosus clone EuryAp... 124 4e-35
AY485639_1(AY485639|pid:none) Amanita phalloides DNA-dependent R... 127 5e-35
FJ358398_1(FJ358398|pid:none) Chaetothyriales sp. TRN508 RNA pol... 129 5e-35
FJ387016_1(FJ387016|pid:none) Trichoplax adhaerens RNA polymeras... 127 5e-35
AY305591_1(AY305591|pid:none) Neogonodactylus oerstedii clone Ne... 122 5e-35
DQ294594_1(DQ294594|pid:none) Coemansia reversa isolate AFTOL-ID... 126 9e-35
EF413629_1(EF413629|pid:none) Ceramothyrium carniolicum RNA poly... 132 9e-35
FJ358364_1(FJ358364|pid:none) Ceramothyrium carniolicum isolate ... 132 9e-35
AF138971_1(AF138971|pid:none) Semibalanus balanoides RNA polymer... 121 9e-35
AY305550_1(AY305550|pid:none) Chthamalus fragilis clone CfrApol ... 121 9e-35
AF138982_1(AF138982|pid:none) Hanseniella sp. 'Han' RNA polymera... 123 1e-34
AE017345_374(AE017345|pid:none) Cryptococcus neoformans var. neo... 132 1e-34
AF315819_1(AF315819|pid:none) Botryocladia uvarioides DNA-depend... 126 1e-34
CP000883_120(CP000883|pid:none) Hemiselmis andersenii chromosome... 124 1e-34
DQ782823_1(DQ782823|pid:none) Echinoplaca strigulacea isolate AF... 135 1e-34
AY305541_1(AY305541|pid:none) Allopauropus proximus clone AprApo... 122 1e-34
AY490565_1(AY490565|pid:none) Nymphaea lotus RNA polymerase III ... 149 2e-34
AF139016_1(AF139016|pid:none) Milnesium tardigradum RNA polymera... 121 2e-34
EU677581_1(EU677581|pid:none) Scaphinotus petersi RNA polymerase... 120 2e-34
AF315820_1(AF315820|pid:none) Glaucosphaera vacuolata DNA-depend... 127 2e-34
U10331_1(U10331|pid:none) Artemia salina RNA polymerase II, larg... 119 2e-34
DQ294605_1(DQ294605|pid:none) Synchytrium macrosporum isolate AF... 123 2e-34
AY305547_1(AY305547|pid:none) Artemia salina clone Asa2Apol RNA ... 119 3e-34
U10334_1(U10334|pid:none) Crassostrea gigas RNA polymerase II la... 121 3e-34
AF240893_1(AF240893|pid:none) Abacion magnum RNA polymerase II l... 123 4e-34
AY305615_1(AY305615|pid:none) Scutigerella sp. Scu3 RNA polymera... 121 4e-34
EU677578_1(EU677578|pid:none) Sialis sp. ALW-2008 RNA polymerase... 120 4e-34
AY305569_1(AY305569|pid:none) Lepas anserifera clone LeanApol RN... 119 6e-34
CP000559_1152(CP000559|pid:none) Methanocorpusculum labreanum Z,... 124 7e-34
AM910994_236(AM910994|pid:none) Plasmodium knowlesi strain H chr... 147 9e-34
CR940352_164(CR940352|pid:none) Theileria annulata strain Ankara... 120 9e-34
CP000743_779(CP000743|pid:none) Methanococcus aeolicus Nankai-3,... 128 1e-33
AF240896_1(AF240896|pid:none) Bothropolys multidentatus RNA poly... 125 2e-33
AF139013_1(AF139013|pid:none) Tanystylum orbiculare RNA polymera... 122 2e-33
AY305572_1(AY305572|pid:none) Libinia emarginata clone LemApol R... 116 2e-33
T43026(T43026) probable DNA-directed RNA polymerase (EC 2.7.7.6)... 124 3e-33
I38186(I38186) RNA polymerase II largest subunit - human &X7487... 121 3e-33
(P24928) RecName: Full=DNA-directed RNA polymerase II subunit RP... 121 3e-33
(P08775) RecName: Full=DNA-directed RNA polymerase II subunit RP... 121 3e-33
D87293_1(D87293|pid:none) Cricetulus griseus mRNA for RNA polyme... 121 3e-33
U37500_1(U37500|pid:none) Mus musculus RNA polymerase II largest... 121 3e-33
A28490(A28490;A23566) DNA-directed RNA polymerase (EC 2.7.7.6) I... 121 3e-33
AF138977_1(AF138977|pid:none) Eurytemora affinis RNA polymerase ... 120 4e-33
DQ883743_1(DQ883743|pid:none) Coccocarpia erythroxyli isolate AF... 133 5e-33
AF395111_1(AF395111|pid:none) Ochromonas danica RNA polymerase I... 119 2e-32
CP000477_29(CP000477|pid:none) Methanosaeta thermophila PT, comp... 119 2e-32
DQ996234_1(DQ996234|pid:none) Nosema trichoplusiae RNA polymeras... 119 2e-32
DQ996231_1(DQ996231|pid:none) Nosema bombycis RNA polymerase II ... 119 2e-32
DQ083405_1(DQ083405|pid:none) Nosema sp. PX1 DNA-dependent RNA p... 119 2e-32
DQ666959_1(DQ666959|pid:none) Nosema spodopterae DNA-dependent R... 119 2e-32
DQ083406_1(DQ083406|pid:none) Nosema plutellae isolate PX2 DNA-d... 119 2e-32
DQ782819_1(DQ782819|pid:none) Simonyella variegata isolate AFTOL... 119 5e-32
DQ996235_1(DQ996235|pid:none) Vairimorpha cheracis RNA polymeras... 117 5e-32
DQ996233_1(DQ996233|pid:none) Nosema granulosis RNA polymerase I... 117 5e-32
AM114193_2852(AM114193|pid:none) Uncultured methanogenic archaeo... 119 6e-32
DQ294604_1(DQ294604|pid:none) Scutellospora heterogama isolate A... 115 1e-31
AM494957_33(AM494957|pid:none) Leishmania braziliensis chromosom... 139 3e-31
(P04050) RecName: Full=DNA-directed RNA polymerase II subunit RP... 139 3e-31
CR382126_220(CR382126|pid:none) Kluyveromyces lactis strain NRRL... 138 4e-31
CU928180_82(CU928180|pid:none) Kluyveromyces thermotolerans stra... 138 4e-31
CT005271_37(CT005271|pid:none) Leishmania major strain Friedlin,... 137 7e-31
AM502252_38(AM502252|pid:none) Leishmania infantum chromosome 34. 137 7e-31
AE010299_1228(AE010299|pid:none) Methanosarcina acetivorans str.... 114 9e-31
CR380955_154(CR380955|pid:none) Candida glabrata strain CBS138 c... 137 1e-30
DQ782817_1(DQ782817|pid:none) Canoparmelia caroliniana isolate A... 135 3e-30
CR932237_1(CR932237|pid:none) DNA-directed RNA polymerase II lar... 123 4e-30
(A5DCV3) RecName: Full=DNA-directed RNA polymerase II subunit RP... 134 6e-30
FM992695_931(FM992695|pid:none) Candida dubliniensis CD36 chromo... 134 6e-30
EU016635_42(EU016635|pid:none) Uncultured Group I marine crenarc... 119 7e-30
CP000493_1514(CP000493|pid:none) Hyperthermus butylicus DSM 5456... 120 7e-30
FN392321_582(FN392321|pid:none) Pichia pastoris GS115 chromosome... 133 1e-29
CP000505_285(CP000505|pid:none) Thermofilum pendens Hrk 5, compl... 114 2e-29
EU153431_1(EU153431|pid:none) Oscheius dolichuroides strain DF50... 125 2e-29
CR382133_628(CR382133|pid:none) Debaryomyces hansenii chromosome... 132 2e-29
EU016631_49(EU016631|pid:none) Uncultured Group I marine crenarc... 117 3e-29
FN357295_57(FN357295|pid:none) Schistosoma mansoni genome sequen... 132 3e-29
EU016637_25(EU016637|pid:none) Uncultured Group I marine crenarc... 117 4e-29
D72571(D72571)probable DNA-directed RNA polymerase subunit A' AP... 116 4e-29
BA000002_1215(BA000002|pid:none) Aeropyrum pernix K1 DNA, comple... 116 4e-29
EF689783_1(EF689783|pid:none) Thelidium incavatum isolate AFTOL-... 132 4e-29
(O27125) RecName: Full=DNA-directed RNA polymerase subunit A'; ... 109 5e-29
(P41556) RecName: Full=DNA-directed RNA polymerase subunit A'; ... 116 1e-28
CP000745_602(CP000745|pid:none) Methanococcus maripaludis C7, co... 116 1e-28
BX950229_1363(BX950229|pid:none) Methanococcus maripaludis strai... 116 1e-28
DQ294586_1(DQ294586|pid:none) Spizellomyces punctatus isolate AF... 107 1e-28
DQ912375_1(DQ912375|pid:none) Protopannaria pezizoides isolate A... 130 1e-28
(P31813) RecName: Full=DNA-directed RNA polymerase subunit A'; ... 120 1e-28
GM016639_224(GM016639|pid:none) Sequence 1469 from Patent EP1923... 120 1e-28
AJ278952_1(AJ278952|pid:none) Glugea anomala partial rpb1 gene f... 108 2e-28
AE000782_1862(AE000782|pid:none) Archaeoglobus fulgidus DSM 4304... 111 2e-28
BA000011_1207(BA000011|pid:none) Thermoplasma volcanium GSS1 DNA... 116 2e-28
X57145_1(X57145|pid:none) H. morrhuae RNA polymerase operon. 110 2e-28
EU153432_1(EU153432|pid:none) Oscheius dolichura strain JU460 RN... 129 3e-28
A31494(A31494)DNA-directed RNA polymerase (EC 2.7.7.6) IIA - Try... 109 4e-28
B31494(B31494)DNA-directed RNA polymerase (EC 2.7.7.6) IIB - Try... 109 4e-28
(P17546) RecName: Full=DNA-directed RNA polymerase II subunit RP... 109 4e-28
J04841_1(J04841|pid:none) T.brucei RNA polymerase IIB largest su... 109 4e-28
CP001331_358(CP001331|pid:none) Micromonas sp. RCC299 chromosome... 109 4e-28
AE009950_1563(AE009950|pid:none) Pyrococcus furiosus DSM 3638, c... 118 4e-28
CP000575_790(CP000575|pid:none) Staphylothermus marinus F1, comp... 111 4e-28
AY137579_1(AY137579|pid:none) Trypanosoma cruzi TcPolIILSUB RNA ... 109 5e-28
AF372503_1(AF372503|pid:none) Trypanosoma cruzi TcPolIILSUA RNA ... 109 5e-28
T13803(T13803) DNA-directed RNA polymerase (EC 2.7.7.6) I large ... 119 5e-28
AE013599_2012(AE013599|pid:none) Drosophila melanogaster chromos... 119 5e-28
(P91875) RecName: Full=DNA-directed RNA polymerase I subunit RPA... 119 5e-28
CP000852_180(CP000852|pid:none) Caldivirga maquilingensis IC-167... 108 5e-28
AF083338_1(AF083338|pid:none) Breviata anathema DNA-dependent RN... 128 6e-28
U73451_1(U73451|pid:none) Cruznema tripartitum large subunit RNA... 128 6e-28
EU016588_36(EU016588|pid:none) Uncultured Group I marine crenarc... 115 7e-28
DQ294596_1(DQ294596|pid:none) Rhopalomyces elegans isolate AFTOL... 104 7e-28
EU153441_1(EU153441|pid:none) Acrobeles maximus RNA polymerase 2... 127 7e-28
AF165818_133(AF165818|pid:none) Guillardia theta nucleomorph chr... 108 8e-28
EU161962_1(EU161962|pid:none) Oscheius insectivora strain SB169 ... 127 1e-27
EU153428_1(EU153428|pid:none) Rhabditis sp. SB347 RNA polymerase... 127 1e-27
AF315823_1(AF315823|pid:none) Stylonychia mytilus DNA-dependent ... 127 1e-27
AM494968_295(AM494968|pid:none) Leishmania braziliensis chromoso... 107 1e-27
EU161978_1(EU161978|pid:none) Cuticonema vivipara strain SB179 R... 127 1e-27
AE017344_305(AE017344|pid:none) Cryptococcus neoformans var. neo... 111 1e-27
AB433782_4(AB433782|pid:none) Haloarcula japonica rpoH, rpoB'', ... 106 1e-27
AY602183_1(AY602183|pid:none) Rhabditella axei RNA polymerase 2 ... 126 2e-27
AJ278951_1(AJ278951|pid:none) Loma acerinae partial rpb1 gene fo... 113 2e-27
CP000682_34(CP000682|pid:none) Metallosphaera sedula DSM 5348, c... 108 2e-27
EU153430_1(EU153430|pid:none) Oscheius tipulae strain CEW1 RNA p... 126 2e-27
EU161981_1(EU161981|pid:none) Pellioditis sp. JU274 strain SB274... 126 2e-27
(Q03585) RecName: Full=DNA-directed RNA polymerase subunit A'; ... 113 2e-27
X14818_4(X14818|pid:none) Sulfolobus acidocaldarius rpoB, rpoA a... 110 2e-27
(P11512) RecName: Full=DNA-directed RNA polymerase subunit A'; ... 110 2e-27
AF126254_1(AF126254|pid:none) Leishmania donovani RNA polymerase... 105 3e-27
CT005268_264(CT005268|pid:none) Leishmania major strain Friedlin... 105 3e-27
AM502249_329(AM502249|pid:none) Leishmania infantum chromosome 31. 105 3e-27
FJ267453_1(FJ267453|pid:none) Fahrenholzia pinnata voucher Fzpin... 125 4e-27
AY601771_1(AY601771|pid:none) Caenorhabditis remanei strain SB14... 125 4e-27
AY168016_1(AY168016|pid:none) Gregarina niphandrodes DNA-depende... 125 4e-27
AF338253_1(AF338253|pid:none) Leptomonas seymouri RNA polymerase... 105 4e-27
AY490547_1(AY490547|pid:none) Cycas revoluta RNA polymerase I la... 117 4e-27
AY604469_1(AY604469|pid:none) Prodontorhabditis wirthi strain DF... 125 5e-27
(P25202) RecName: Full=DNA-directed RNA polymerase III subunit R... 125 5e-27
AY602187_1(AY602187|pid:none) Caenorhabditis sp. SB341 RNA polym... 125 5e-27
S14183(S14183) DNA-directed RNA polymerase (EC 2.7.7.6) largest ... 125 5e-27
EU153417_1(EU153417|pid:none) Pellioditis mediterranea strain DF... 125 5e-27
S22812(S22812)DNA-directed RNA polymerase (EC 2.7.7.6) III large... 125 5e-27
EU153429_1(EU153429|pid:none) Rhabditis rainai strain PS1191 RNA... 125 5e-27
EU161970_1(EU161970|pid:none) Rhabditis blumi strain DF5010 RNA ... 124 6e-27
EU153422_1(EU153422|pid:none) Pelodera teres strain EM437 RNA po... 124 6e-27
EU161967_1(EU161967|pid:none) Phasmarhabditis sp. EM434 RNA poly... 124 6e-27
EU153410_1(EU153410|pid:none) Pellioditis typica strain DF5025 R... 124 6e-27
U73456_1(U73456|pid:none) Teratorhabditis palmarum large subunit... 124 8e-27
EU153423_1(EU153423|pid:none) Rhabditoides regina strain DF5012 ... 124 8e-27
FM992688_983(FM992688|pid:none) Candida dubliniensis CD36 chromo... 101 9e-27
CP000501_67(CP000501|pid:none) Pichia stipitis CBS 6054 chromoso... 101 9e-27
EU153420_1(EU153420|pid:none) Pelodera strongyloides dermatitica... 124 1e-26
EU161971_1(EU161971|pid:none) Rhabditoides inermiformis strain S... 124 1e-26
AY602189_1(AY602189|pid:none) Caenorhabditis sp. DF5070 RNA poly... 123 1e-26
AY601774_1(AY601774|pid:none) Caenorhabditis sp. PS1010 RNA poly... 123 1e-26
EU153411_1(EU153411|pid:none) Rhabditis brassicae strain SB193 R... 123 2e-26
EU153439_1(EU153439|pid:none) Poikilolaimus regenfussi strain SB... 123 2e-26
EU161960_1(EU161960|pid:none) Pellioditis mediterranea strain DF... 123 2e-26
EU153438_1(EU153438|pid:none) Rhabditoid sp. PDL15 RNA polymeras... 122 2e-26
AF309686_1(AF309686|pid:none) Xenopus laevis RNA polymerase I la... 114 3e-26
CU928168_63(CU928168|pid:none) Kluyveromyces thermotolerans stra... 100 3e-26
BC166364_1(BC166364|pid:none) Xenopus tropicalis hypothetical pr... 114 3e-26
EU161975_1(EU161975|pid:none) Pelodera punctata strain SB160 RNA... 122 3e-26
EU153421_1(EU153421|pid:none) Pelodera punctata strain SB160 RNA... 122 3e-26
AJ278950_1(AJ278950|pid:none) Pleistophora hippoglossoideos part... 108 3e-26
EF413613_2(EF413613|pid:none) Spiromastix warcupii RNA polymeras... 99 3e-26
EU161972_1(EU161972|pid:none) Bunonema reticulatum strain PDL100... 122 4e-26
CR954214_110(CR954214|pid:none) Ostreococcus tauri strain OTTH05... 109 4e-26
AP007161_408(AP007161|pid:none) Aspergillus oryzae RIB40 genomic... 106 4e-26
CP000102_1329(CP000102|pid:none) Methanosphaera stadtmanae DSM 3... 121 5e-26
AL032648_1(AL032648|pid:none) Caenorhabditis elegans YAC Y54G9A,... 112 6e-26
AM270171_5(AM270171|pid:none) Aspergillus niger contig An08c0160... 106 6e-26
AJ278945_1(AJ278945|pid:none) Trachipleistophora hominis partial... 106 6e-26
(P10964) RecName: Full=DNA-directed RNA polymerase I subunit RPA... 100 7e-26
J03530_1(J03530|pid:none) Yeast (S.cerevisiae) RNA polymerase A(... 100 7e-26
CP000562_299(CP000562|pid:none) Methanoculleus marisnigri JR1, c... 120 9e-26
EF119338_1(EF119338|pid:none) Pleistophora mulleri RNA polymeras... 107 1e-25
AJ278949_1(AJ278949|pid:none) Cystosporogenes operophterae parti... 120 1e-25
(Q58445) RecName: Full=DNA-directed RNA polymerase subunit A'; ... 120 1e-25
DQ657193_1(DQ657193|pid:none) Trichopalpus fraterna RNA polymera... 120 1e-25
DQ657163_1(DQ657163|pid:none) Chaetosa palpalis RNA polymerase s... 120 1e-25
A64430(A64430)DNA-directed RNA polymerase (EC 2.7.7.6) subunit A... 120 1e-25
BC143345_1(BC143345|pid:none) Homo sapiens polymerase (RNA) I po... 113 1e-25
(O95602) RecName: Full=DNA-directed RNA polymerase I subunit RPA... 113 1e-25
AK294447_1(AK294447|pid:none) Homo sapiens cDNA FLJ56651 complet... 113 1e-25
AK304131_1(AK304131|pid:none) Homo sapiens cDNA FLJ58792 complet... 113 1e-25
BC073968_1(BC073968|pid:none) Homo sapiens polymerase (RNA) I po... 113 1e-25
AC012511_1(AC012511|pid:none) Homo sapiens BAC clone RP11-548P2 ... 113 1e-25
AB173155_1(AB173155|pid:none) Macaca fascicularis brain cDNA clo... 113 1e-25
(O54889) RecName: Full=DNA-directed RNA polymerase I subunit RPA... 112 2e-25
BC053744_1(BC053744|pid:none) Mus musculus polymerase (RNA) I po... 112 2e-25
AF000938_1(AF000938|pid:none) Mus musculus RNA polymerase I larg... 112 2e-25
(Q7T6X5) RecName: Full=DNA-directed RNA polymerase subunit 1; ... 105 2e-25
AK082883_1(AK082883|pid:none) Mus musculus 7 days embryo whole b... 112 2e-25
AK160785_1(AK160785|pid:none) Mus musculus 14, 17 days embryo he... 112 2e-25
BC034785_1(BC034785|pid:none) Mus musculus polymerase (RNA) I po... 112 2e-25
BC010254_1(BC010254|pid:none) Mus musculus polymerase (RNA) I po... 112 2e-25
AK160970_1(AK160970|pid:none) Mus musculus 15 days embryo head c... 112 2e-25
AJ278946_1(AJ278946|pid:none) Pleistophora typicalis partial rpb... 106 2e-25
CR858883_1(CR858883|pid:none) Pongo abelii mRNA; cDNA DKFZp469F0... 112 2e-25
AJ278956_1(AJ278956|pid:none) Vavraia culicis partial rpb1 gene ... 104 2e-25
CP001014_1921(CP001014|pid:none) Thermoproteus neutrophilus V24S... 100 2e-25
AY490543_1(AY490543|pid:none) Ephedra viridis RNA polymerase I l... 110 2e-25
AJ890364_64(AJ890364|pid:none) Emiliania huxleyi virus 86 isolat... 96 3e-25
AM454997_1(AM454997|pid:none) Vitis vinifera contig VV78X022173.... 108 3e-25
S04198(S04198)DNA-directed RNA polymerase (EC 2.7.7.6) II large ... 106 3e-25
X13490_1(X13490|pid:none) Crithidia fasciculata crp22 gene fragm... 106 3e-25
DQ657160_1(DQ657160|pid:none) Cordilura pudica RNA polymerase su... 119 3e-25
DQ657161_1(DQ657161|pid:none) Cordilura varipes RNA polymerase s... 119 3e-25
DQ657147_1(DQ657147|pid:none) Mesembrina mystacea RNA polymerase... 119 3e-25
DQ657185_1(DQ657185|pid:none) Scathophaga pictipennis RNA polyme... 119 3e-25
DQ657148_1(DQ657148|pid:none) Americina adusta RNA polymerase su... 119 3e-25
DQ657158_1(DQ657158|pid:none) Cordilura pleuricata RNA polymeras... 119 3e-25
DQ657183_1(DQ657183|pid:none) Scathophaga inquinata RNA polymera... 119 3e-25
DQ657174_1(DQ657174|pid:none) Norellia striolata RNA polymerase ... 119 3e-25
DQ657151_1(DQ657151|pid:none) Cordilura albipes RNA polymerase s... 119 3e-25
DQ657152_1(DQ657152|pid:none) Cordilura atrata RNA polymerase su... 119 3e-25
DQ657180_1(DQ657180|pid:none) Scathophaga calida RNA polymerase ... 119 3e-25
AM910992_237(AM910992|pid:none) Plasmodium knowlesi strain H chr... 109 5e-25
AL049660_15(AL049660|pid:none) Arabidopsis thaliana DNA chromoso... 108 5e-25
DQ657192_1(DQ657192|pid:none) Spaziphora hydromyzina RNA polymer... 117 8e-25
CP001399_1862(CP001399|pid:none) Sulfolobus islandicus L.S.2.15,... 117 1e-24
CP001402_1886(CP001402|pid:none) Sulfolobus islandicus M.16.4, c... 117 1e-24
FJ515665_1(FJ515665|pid:none) Sulfolobus shibatae B12 RNA polyme... 117 1e-24
AY490540_1(AY490540|pid:none) Podocarpus macrophyllus RNA polyme... 108 1e-24
AC148348_11(AC148348|pid:none) Medicago truncatula clone mth2-28... 107 2e-24
AY490544_1(AY490544|pid:none) Amborella trichopoda RNA polymeras... 108 2e-24
DQ657182_1(DQ657182|pid:none) Scathophaga furcata RNA polymerase... 116 2e-24
CP000254_49(CP000254|pid:none) Methanospirillum hungatei JF-1, c... 115 3e-24
CR940347_416(CR940347|pid:none) Theileria annulata strain Ankara... 104 3e-24
DQ996236_1(DQ996236|pid:none) Vairimorpha necatrix RNA polymeras... 115 5e-24
CP000660_2249(CP000660|pid:none) Pyrobaculum arsenaticum DSM 135... 94 5e-24
AY490541_1(AY490541|pid:none) Taxus canadensis RNA polymerase I ... 108 5e-24
(Q8SSC4) RecName: Full=DNA-directed RNA polymerase II subunit RP... 114 7e-24
CP001338_2063(CP001338|pid:none) Candidatus Methanosphaerula pal... 114 7e-24
DQ657153_1(DQ657153|pid:none) Cordilura carbonaria RNA polymeras... 114 9e-24
AM180088_2477(AM180088|pid:none) Haloquadratum walsbyi DSM 16790... 114 9e-24
AL844504_93(AL844504|pid:none) Plasmodium falciparum 3D7 chromos... 106 9e-24
L11172_1(L11172|pid:none) Plasmodium falciparum RNA polymerase I... 106 9e-24
AB092412_1(AB092412|pid:none) Giardia intestinalis gene for RNA ... 106 9e-24
CP000780_1923(CP000780|pid:none) Candidatus Methanoregula boonei... 113 2e-23
CP000504_696(CP000504|pid:none) Pyrobaculum islandicum DSM 4184,... 96 2e-23
AF060234_1(AF060234|pid:none) Vairimorpha necatrix largest subun... 112 2e-23
AJ278953_1(AJ278953|pid:none) Pleistophora anguillarum partial r... 99 3e-23
EU161963_1(EU161963|pid:none) Rhabditoides inermis strain SB328 ... 112 3e-23
(Q9HM79) RecName: Full=DNA-directed RNA polymerase subunit A'; ... 112 4e-23
X57144_4(X57144|pid:none) H. halobium RNA polymerase subunit ope... 112 4e-23
AE004437_2048(AE004437|pid:none) Halobacterium sp. NRC-1, comple... 112 4e-23
X14783_1(X14783|pid:none) Fission yeast DNA for nuc1 gene for RN... 111 7e-23
CP001365_105(CP001365|pid:none) Halorubrum lacusprofundi ATCC 49... 108 5e-22
AM502234_141(AM502234|pid:none) Leishmania infantum chromosome 16. 99 6e-22
AJ010592_77(AJ010592|pid:none) Guillardia theta DNA for complete... 94 6e-22
CP001140_1371(CP001140|pid:none) Desulfurococcus kamchatkensis 1... 108 6e-22
FN357313_47(FN357313|pid:none) Schistosoma mansoni genome sequen... 99 2e-21
AF249986_1(AF249986|pid:none) Philodina roseola RNA polymerase I... 105 5e-21
AE016817_773(AE016817|pid:none) Ashbya gossypii (= Eremothecium ... 104 7e-21
AF249985_1(AF249985|pid:none) Philodina roseola RNA polymerase I... 104 7e-21
AY490545_1(AY490545|pid:none) Nymphaea lotus RNA polymerase I la... 104 9e-21
DQ158856_85(DQ158856|pid:none) Bigelowiella natans nucleomorph c... 103 1e-20
CU638744_169(CU638744|pid:none) Podospora anserina genomic DNA c... 103 2e-20
A34374(A34374;S19264;S04272;S06857) DNA-directed RNA polymerase ... 102 3e-20
CU928176_188(CU928176|pid:none) Zygosaccharomyces rouxii strain ... 102 3e-20
DQ206535_1(DQ206535|pid:none) Suberites fuscus isolate TOA43 RNA... 102 3e-20
EF089401_37(EF089401|pid:none) Uncultured marine bacterium HF10_... 101 6e-20
EU153426_1(EU153426|pid:none) Pristionchus pacificus strain PS31... 100 1e-19
CP000968_1508(CP000968|pid:none) Candidatus Korarchaeum cryptofi... 97 1e-19
AY150217_6(AY150217|pid:none) Ambystoma tigrinum stebbensi virus... 99 1e-19
FN392320_919(FN392320|pid:none) Pichia pastoris GS115 chromosome... 100 2e-19
EU153409_1(EU153409|pid:none) Protorhabditis sp. JB122 RNA polym... 100 2e-19
AY548484_8(AY548484|pid:none) Frog virus 3, complete genome. 98 2e-19
AY666015_59(AY666015|pid:none) Grouper iridovirus, complete geno... 99 4e-19
(P28364) RecName: Full=DNA-directed RNA polymerase II subunit RP... 97 1e-18
AE017199_490(AE017199|pid:none) Nanoarchaeum equitans Kin4-M, co... 97 1e-18
GM016257_217(GM016257|pid:none) Sequence 1087 from Patent EP1923... 96 2e-18
AF371960_28(AF371960|pid:none) Infectious spleen and kidney necr... 95 5e-18
AB018418_1(AB018418|pid:none) Red sea bream iridovirus genes for... 94 1e-17

>(Q86AQ5) RecName: Full=DNA-directed RNA polymerase III subunit
rpc1; Short=RNA polymerase III subunit C1;
EC=2.7.7.6; AltName: Full=DNA-directed RNA
polymerase III subunit A;
&AC116977_45(AC116977|pid:none)
Length = 1450

Score = 413 bits (1062), Expect = e-114
Identities = 202/202 (100%), Positives = 202/202 (100%)
Frame = +3

Query: 24 MIELLKEDDAPKKIGHIQFGLLSEDDIVRLSHVQIVNRELFDLVKRKPTPYGVLDNKLGT 203
MIELLKEDDAPKKIGHIQFGLLSEDDIVRLSHVQIVNRELFDLVKRKPTPYGVLDNKLGT
Sbjct: 1 MIELLKEDDAPKKIGHIQFGLLSEDDIVRLSHVQIVNRELFDLVKRKPTPYGVLDNKLGT 60

Query: 204 SDKQAMCTTCGLSIVDCVGHFGYIKLQLPVFHIGYLKNIMNILQMICKSCSTILLNEEKK 383
SDKQAMCTTCGLSIVDCVGHFGYIKLQLPVFHIGYLKNIMNILQMICKSCSTILLNEEKK
Sbjct: 61 SDKQAMCTTCGLSIVDCVGHFGYIKLQLPVFHIGYLKNIMNILQMICKSCSTILLNEEKK 120

Query: 384 QYYLRKMRNKKMDNLQRKSLLKKIFLECRKTKECLKCGSTNGMIKKSGAFKIIHEKYKGK 563
QYYLRKMRNKKMDNLQRKSLLKKIFLECRKTKECLKCGSTNGMIKKSGAFKIIHEKYKGK
Sbjct: 121 QYYLRKMRNKKMDNLQRKSLLKKIFLECRKTKECLKCGSTNGMIKKSGAFKIIHEKYKGK 180

Query: 564 TESLQDYYALYDDAIKYNPEMK 629
TESLQDYYALYDDAIKYNPEMK
Sbjct: 181 TESLQDYYALYDDAIKYNPEMK 202

Score = 374 bits (961), Expect = e-102
Identities = 186/198 (93%), Positives = 186/198 (93%)
Frame = +1

Query: 739 PHFKHFAKNPKSKGFVSNSFYTGMIPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLMKA 918
PHFKHFAKNPKSKGFVSNSFYTGMIPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLMKA
Sbjct: 807 PHFKHFAKNPKSKGFVSNSFYTGMIPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLMKA 866

Query: 919 LEDLSTHYDYTVRDSIGGIVQFIYGDDGLDPAGMEAKDRPVDFLRAMMSVKSTRQCRNEP 1098
LEDLSTHYDYTVRDSIGGIVQFIYGDDGLDPAGMEAKDRPVDFLRAMMSVKSTRQCRNEP
Sbjct: 867 LEDLSTHYDYTVRDSIGGIVQFIYGDDGLDPAGMEAKDRPVDFLRAMMSVKSTRQCRNEP 926

Query: 1099 EMKPFEIRKLVESIIDSSKFEACTDLFKNEIRVFFNGNEKTKGYIQELISLRKQFKLSSF 1278
EMKPFEIRKLVESIIDSSKFEACTDLFKNEIRVFFNGNEKTKGYIQELISLRKQFKLSSF
Sbjct: 927 EMKPFEIRKLVESIIDSSKFEACTDLFKNEIRVFFNGNEKTKGYIQELISLRKQFKLSSF 986

Query: 1279 DLXXXXXXXXXXXXSPMD 1332
DL SPMD
Sbjct: 987 DLNDNEDEIIIEDNSPMD 1004

Score = 82.8 bits (203), Expect = 3e-14
Identities = 39/47 (82%), Positives = 40/47 (85%)
Frame = +3

Query: 642 GSNINIAQMICCVGQQIVNGTRIPNGFTNRTTPTFQTFCKESKIKRF 782
GSNINIAQMICCVGQQIVNGTRIPNGFTNRTTP F+ F K K K F
Sbjct: 775 GSNINIAQMICCVGQQIVNGTRIPNGFTNRTTPHFKHFAKNPKSKGF 821

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 2,058,874,577
Number of extensions: 39963027
Number of successful extensions: 108236
Number of sequences better than 10.0: 1672
Number of HSP's gapped: 107997
Number of HSP's successfully gapped: 2513
Length of query: 469
Length of database: 1,040,966,779
Length adjustment: 132
Effective length of query: 337
Effective length of database: 618,001,159
Effective search space: 208266390583
Effective search space used: 208266390583
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.75 gvh: 0.25 alm: 0.37 top: 0.53 tms: 0.00 mit: 0.24 mip: 0.00
nuc: 0.10 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
36.0 %: cytoplasmic
8.0 %: plasma membrane
4.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: mitochondrial

>> prediction for Contig-U11311-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 5
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 4
SF (FL, S) 0
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0