Contig-U11305-1
Contig ID Contig-U11305-1
Contig update 2002.12.18
Contig sequence
>Contig-U11305-1 (Contig-U11305-1Q) /CSM_Contig/Contig-U11305-1Q.Seq.d
ATATTTAGATATAAAGAAACCAAATTTACCATTAAAAGCAGAAAGTGCTT
CAATTGGAATTTCAATAACCGACACTTGTAATACAACAAATTTAACCAGT
AATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA
TCCAAATAATAATAATAATAATAATCCAAATAATAATAATAATAATAATC
CAAATAATAATAATAATAAAAATAATCCAAATAATAAAAATAATAATTTA
ATTGTTGATAATATAGTTGATTATAATAATTTAACAGTATCACCATTACC
ACTTAATAGAAGTAGAAGTAATAGTATGAATAGTGGACCAACAGTTCATG
TAATTAGTAGTACTACTGGTAGAGGNAGAAGTAGTAGTATGTCAAATAAT
AGNATGGTGATTAATCAACCTTGTGGTAGTACTATTACTACAACCAATAT
CAATTCCAATACCAATAATAATAGTAGTAGTAGTAGTAGTAGTAGTAATA
GTTATTATAATTATTTTAGTAGAAAGAGTAATAATAATAAAAAAATTAAA
GTACCAAGTTCACCATAATCAATTGGAGGTATGGGAATAATGGGAGGTGG
TA----------TTATTAAAAACTCATAAAAACCAATTAAAGAAACAAAA
GGATATTGAAAAGTTTTTGTCAACTTTAAACAAATTAAATTTACAAATGT
TTGATGCTGATGCTTTAATTAAAGTTGCTTTTGAAAGTATCTCTTTAAAA
AGAAGTCATTTAGAAGATATCAATGATAAACAAAATCATAAAGTTAAAGA
TGTACCTGAACCCGCACCAATTTATTATAGATCAAAAATTACAATACCTT
CTGTAATTTTAAATTCTGATGATTTTGAATTAATTTGGGCATGGTTACCA
CCAAGATTATCAGTTGCAACACCAAGAAAATTATTCAATTCAGTTACAGA
TGGTAATAATGTTAGATTATTATTTGAAAGTTTAGTTGAACATACTTGTA
TTTTAGTAGTTTTAAAATCTGATAATGGAAGTATTTTTGGATTTTATAGT
GACTCTGAAGTTCAACCAAAGTTTGGTTTTGGTGATAGAAATGTCTTTTT
ATTCACTCTTAAACCTCATGTTCATGTTTATAAACCAACTGAAAAAAATC
AATTATATACAAGTTTTAAAGAACAATCAATTTCAATTGGTCATTCAAAT
TTGGGAGAGATAGGATTATTTATTGGTGCAGATTTAAATGGTAAAACTGG
TGCCACGGAAACTTTTGGAAACCCATGTTTGAATGATAAAGATCAACATA
CTTTCCAAACTATTGTTTTAGAAGCATTCACAATTGAACAATAAAAAAAT
ATAATAACATGTAATTATAACAACAAATACCAACAATAGTAAATAATTTT
TTAGAATAATCTATTTTATTTTTCTGGAAAAAAAAAAAAAAAAAAACAAC
CGATGTAAATAAATATTTTTTTAATTATTTCTTTTTTATTTCCAAGATAA
AAAAAA

Gap gap included
Contig length 1496
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 8
Number of EST 13
Link to clone list U11305
List of clone(s)

est1=VSA335E,-17,217
est2=VHP122F,1,602
est3=SSH756F,19,367
est4=AHE595F,31,551
est5=CHQ878F,45,547
est6=AHJ379Z,103,231
est7=VHP122Z,603,1398
est8=AHE595Z,647,1390
est9=CHQ878Z,672,1409
est10=SSH756Z,1129,1424
est11=SSB351E,1161,1497
est12=VSF338F,1234,1498
est13=VSF338Z,1235,1335
Translated Amino Acid sequence
ifryketkftiksrkcfnwnfnnrhl*ynkfnq*****************sk******sk
******sk*****k*sk**k**fnc**ys*l**fnsititt**k*k**ye*wtnsscn**
yyw*rxk**yvk**xgd*stlw*yyyynqyqfqyq************ll*lf**ke****
kn*STKFTIINWRYGNNGRW---

---LLKTHKNQLKKQKDIEKFLSTLNKLNLQMFDADALIKVAFESISLKRSHLEDINDKQ
NHKVKDVPEPAPIYYRSKITIPSVILNSDDFELIWAWLPPRLSVATPRKLFNSVTDGNNV
RLLFESLVEHTCILVVLKSDNGSIFGFYSDSEVQPKFGFGDRNVFLFTLKPHVHVYKPTE
KNQLYTSFKEQSISIGHSNLGEIGLFIGADLNGKTGATETFGNPCLNDKDQHTFQTIVLE
AFTIEQ*kniitcnynnkyqq**iif*nnlfyfsgkkkkkkqpm*inifliisflfpr*k
k


Translated Amino Acid sequence (All Frames)
Frame A:
ifryketkftiksrkcfnwnfnnrhl*ynkfnq*****************sk******sk
******sk*****k*sk**k**fnc**ys*l**fnsititt**k*k**ye*wtnsscn**
yyw*rxk**yvk**xgd*stlw*yyyynqyqfqyq************ll*lf**ke****
kn*STKFTIINWRYGNNGRW---

---LLKTHKNQLKKQKDIEKFLSTLNKLNLQMFDADALIKVAFESISLKRSHLEDINDKQ
NHKVKDVPEPAPIYYRSKITIPSVILNSDDFELIWAWLPPRLSVATPRKLFNSVTDGNNV
RLLFESLVEHTCILVVLKSDNGSIFGFYSDSEVQPKFGFGDRNVFLFTLKPHVHVYKPTE
KNQLYTSFKEQSISIGHSNLGEIGLFIGADLNGKTGATETFGNPCLNDKDQHTFQTIVLE
AFTIEQ*kniitcnynnkyqq**iif*nnlfyfsgkkkkkkqpm*inifliisflfpr*k
k

Frame B:
yldikkpnlplkaesasigisitdtcnttnltsnnnnnnnnnnnnnnnnnpnnnnnnnpn
nnnnnnpnnnnnknnpnnknnnlivdnivdynnltvsplplnrsrsnsmnsgptvhviss
ttgrgrsssmsnnxmvinqpcgstitttninsntnnnssssssssnsyynyfsrksnnnk
kikvpssp*siggmgimggg---

---y*kliktn*rnkrilksfcql*tn*iykclmlml*lklllkvsl*kevi*kismink
iiklkmylnphqfiidqklqyll*f*ilmiln*fghgyhqdyqlqhqenysiqlqmviml
dyylkv*lnilvf**f*nlimevfldfivtlkfnqslvlviemsfysllnlmfmfinqlk
kinyiqvlknnqfqlviqiwer*dyllvqi*mvklvprkllethv*mikinilskllf*k
hsqlnnkki**hviittntnnsk*ffriiyfiflekkkkknnrck*iff*lflfyfqdkk

Frame C:
i*i*rnqiyh*kqkvlqlefq*ptlviqqi*pviiiiiiiiiiiiiiiiiqiiiiiiiqi
iiiiiiqiiiiikiiqiikiii*llii*liiii*qyhhyhlieveviv*ivdqqfm*lvv
llvexevvvcqiixw*linlvvvlllqpisipipiiivvvvvvvviviiiilverviiik
klkyqvhhnqlevwe*wevv---

---ikns*kpiketkgy*kvfvnfkqikftnv*c*cfn*scf*kylfkkksfrryq**tk
s*s*rct*trtnll*iknyntfcnfkf**f*inlgmvttkiiscntkkiiqfsyrw**c*
iii*kfs*tylyfssfki**wkyfwil**l*sstkvwfw**kclfihs*tscscl*tn*k
ksiiykf*rtinfnwsfkfgrdriiywcrfkw*nwchgnfwkpmfe**rstyfpnycfrs
ihn*tikkynnm*l*qqiptivnnfle*silffwkkkkkkttdvnkyffnyfffiskikk

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U11305-1 (Contig-U11305-1Q)
/CSM_Contig/Contig-U11305-1Q.Seq.d
(1506 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U11305-1 (Contig-U11305-1Q) /CSM_Contig/Conti... 1606 0.0
Contig-U11336-1 (Contig-U11336-1Q) /CSM_Contig/Conti... 44 4e-04
Contig-U08581-1 (Contig-U08581-1Q) /CSM_Contig/Conti... 42 0.002
Contig-U13073-1 (Contig-U13073-1Q) /CSM_Contig/Conti... 40 0.007
Contig-U12149-1 (Contig-U12149-1Q) /CSM_Contig/Conti... 40 0.007
Contig-U10981-1 (Contig-U10981-1Q) /CSM_Contig/Conti... 40 0.007
Contig-U05804-1 (Contig-U05804-1Q) /CSM_Contig/Conti... 40 0.007
Contig-U14129-1 (Contig-U14129-1Q) /CSM_Contig/Conti... 38 0.027
Contig-U13250-1 (Contig-U13250-1Q) /CSM_Contig/Conti... 38 0.027
Contig-U12095-1 (Contig-U12095-1Q) /CSM_Contig/Conti... 38 0.027

>Contig-U11305-1 (Contig-U11305-1Q) /CSM_Contig/Contig-U11305-1Q.Seq.d
Length = 1506

Score = 1606 bits (810), Expect = 0.0
Identities = 868/882 (98%)
Strand = Plus / Plus


Query: 546 ttaaagtaccaagttcaccataatcaattggaggtatgggaataatgggaggtggtannn 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ttaaagtaccaagttcaccataatcaattggaggtatgggaataatgggaggtggtannn 605


Query: 606 nnnnnnnttattaaaaactcataaaaaccaattaaagaaacaaaaggatattgaaaagtt 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 nnnnnnnttattaaaaactcataaaaaccaattaaagaaacaaaaggatattgaaaagtt 665


Query: 666 tttgtcaactttaaacaaattaaatttacaaatgtttgatgctgatgctttaattaaagt 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tttgtcaactttaaacaaattaaatttacaaatgtttgatgctgatgctttaattaaagt 725


Query: 726 tgcttttgaaagtatctctttaaaaagaagtcatttagaagatatcaatgataaacaaaa 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 tgcttttgaaagtatctctttaaaaagaagtcatttagaagatatcaatgataaacaaaa 785


Query: 786 tcataaagttaaagatgtacctgaacccgcaccaatttattatagatcaaaaattacaat 845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tcataaagttaaagatgtacctgaacccgcaccaatttattatagatcaaaaattacaat 845


Query: 846 accttctgtaattttaaattctgatgattttgaattaatttgggcatggttaccaccaag 905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 accttctgtaattttaaattctgatgattttgaattaatttgggcatggttaccaccaag 905


Query: 906 attatcagttgcaacaccaagaaaattattcaattcagttacagatggtaataatgttag 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 attatcagttgcaacaccaagaaaattattcaattcagttacagatggtaataatgttag 965


Query: 966 attattatttgaaagtttagttgaacatacttgtattttagtagttttaaaatctgataa 1025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966 attattatttgaaagtttagttgaacatacttgtattttagtagttttaaaatctgataa 1025


Query: 1026 tggaagtatttttggattttatagtgactctgaagttcaaccaaagtttggttttggtga 1085
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1026 tggaagtatttttggattttatagtgactctgaagttcaaccaaagtttggttttggtga 1085


Query: 1086 tagaaatgtctttttattcactcttaaacctcatgttcatgtttataaaccaactgnnnn 1145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1086 tagaaatgtctttttattcactcttaaacctcatgttcatgtttataaaccaactgaaaa 1145


Query: 1146 nnntcaattatatacaagttttaaagaacaatcaatttcaattggtcattcaaatttggg 1205
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1146 aaatcaattatatacaagttttaaagaacaatcaatttcaattggtcattcaaatttggg 1205


Query: 1206 agagataggattatttattggtgcagatttaaatggtaaaactggtgccacggaaacttt 1265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1206 agagataggattatttattggtgcagatttaaatggtaaaactggtgccacggaaacttt 1265


Query: 1266 tggaaacccatgtttgaatgataaagatcaacatactttccaaactattgttttagaagc 1325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1266 tggaaacccatgtttgaatgataaagatcaacatactttccaaactattgttttagaagc 1325


Query: 1326 attcacaattgaacaatnnnnnnntataataacatgtaattataacaacaaataccaaca 1385
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1326 attcacaattgaacaataaaaaaatataataacatgtaattataacaacaaataccaaca 1385


Query: 1386 atagtaaataattttttagaataatctattttatttttctgg 1427
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1386 atagtaaataattttttagaataatctattttatttttctgg 1427


Score = 359 bits (181), Expect = 6e-99
Identities = 187/187 (100%)
Strand = Plus / Plus


Query: 285 cagtatcaccattaccacttaatagaagtagaagtaatagtatgaatagtggaccaacag 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 cagtatcaccattaccacttaatagaagtagaagtaatagtatgaatagtggaccaacag 344


Query: 345 ttcatgtaattagtagtactactggtagaggnagaagtagtagtatgtcaaataatagna 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ttcatgtaattagtagtactactggtagaggnagaagtagtagtatgtcaaataatagna 404


Query: 405 tggtgattaatcaaccttgtggtagtactattactacaaccaatatcaattccaatacca 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 tggtgattaatcaaccttgtggtagtactattactacaaccaatatcaattccaatacca 464


Query: 465 ataataa 471
|||||||
Sbjct: 465 ataataa 471


Score = 196 bits (99), Expect = 5e-50
Identities = 99/99 (100%)
Strand = Plus / Plus


Query: 1 atatttagatataaagaaaccaaatttaccattaaaagcagaaagtgcttcaattggaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atatttagatataaagaaaccaaatttaccattaaaagcagaaagtgcttcaattggaat 60


Query: 61 ttcaataaccgacacttgtaatacaacaaatttaaccag 99
|||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttcaataaccgacacttgtaatacaacaaatttaaccag 99


Score = 103 bits (52), Expect = 5e-22
Identities = 52/52 (100%)
Strand = Plus / Plus


Query: 1447 caaccgatgtaaataaatatttttttaattatttcttttttatttccaagat 1498
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1447 caaccgatgtaaataaatatttttttaattatttcttttttatttccaagat 1498


>Contig-U11336-1 (Contig-U11336-1Q) /CSM_Contig/Contig-U11336-1Q.Seq.d
Length = 1558

Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus


Query: 1371 caacaaataccaacaatagtaa 1392
||||||||||||||||||||||
Sbjct: 158 caacaaataccaacaatagtaa 179


>Contig-U08581-1 (Contig-U08581-1Q) /CSM_Contig/Contig-U08581-1Q.Seq.d
Length = 178

Score = 42.1 bits (21), Expect = 0.002
Identities = 24/25 (96%)
Strand = Plus / Minus


Query: 1466 tttttttaattatttcttttttatt 1490
||||||| |||||||||||||||||
Sbjct: 36 ttttttttattatttcttttttatt 12


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 27,010
Number of Sequences: 6905
Number of extensions: 27010
Number of successful extensions: 3324
Number of sequences better than 10.0: 443
length of query: 1506
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1490
effective length of database: 5,564,391
effective search space: 8290942590
effective search space used: 8290942590
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.23
Homology vs DNA
Query= Contig-U11305-1 (Contig-U11305-1Q) /CSM_Contig/Contig-U11305-1Q.Seq.d
(1506 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ445944) Dictyostelium discoideum cDNA clone:ddv61k05, 3' ... 1049 0.0 3
(BJ350755) Dictyostelium discoideum cDNA clone:dda40m23, 3' ... 955 0.0 3
(BJ385714) Dictyostelium discoideum cDNA clone:ddc55l20, 3' ... 912 0.0 4
(BJ427058) Dictyostelium discoideum cDNA clone:ddv61k05, 5' ... 333 e-164 3
(AU038467) Dictyostelium discoideum slug cDNA, clone SSH756. 385 e-141 2
(C84230) Dictyostelium discoideum slug cDNA, clone SSB351. 341 e-132 3
(BJ332815) Dictyostelium discoideum cDNA clone:dda40m23, 5' ... 329 e-118 2
(BJ370906) Dictyostelium discoideum cDNA clone:ddc55l20, 5' ... 321 e-101 2
(AU265076) Dictyostelium discoideum vegetative cDNA clone:VS... 196 2e-83 2
(AU265077) Dictyostelium discoideum vegetative cDNA clone:VS... 174 6e-39 1
(AU073656) Dictyostelium discoideum slug cDNA, clone SSH756. 161 9e-35 1
(AC176391) Strongylocentrotus purpuratus clone R3-3048D22, W... 36 0.011 2
(AC201681) Strongylocentrotus purpuratus clone R3-3073H6, WO... 36 0.011 2
(EK447057) 1095467050485 Global-Ocean-Sampling_GS-32-01-01-1... 44 0.023 2
(EK467084) 1095469428048 Global-Ocean-Sampling_GS-32-01-01-1... 44 0.029 2
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 42 0.040 13
(BX897736) Zebrafish DNA sequence from clone CH211-181B15 in... 34 0.053 9
(EI988365) SB_BBc15-J18.R SB_BBc Sorghum bicolor genomic 3',... 36 0.19 2
(AC165562) Bos taurus clone CH240-173A3, WORKING DRAFT SEQUE... 50 0.25 1
(CF117358) fp463.z1 fp 73-75d fetal sheep skin library Ovis ... 50 0.25 1
(CU469464) Candidatus Phytoplasma mali strain AT complete ch... 34 0.29 22
(AC178025) Strongylocentrotus purpuratus clone R3-3055H16, W... 34 0.53 2
(AC200916) Strongylocentrotus purpuratus clone R3-1006I04, W... 34 0.54 2
(CU558784) Spc_12YJ21 cDNA clone of Developmental Stages Lib... 38 0.70 2
(EC819307) SME00006021 esmbsro2 Sawyeria marylandensis cDNA,... 32 0.78 3
(BX927325) Zebrafish DNA sequence from clone DKEYP-47G1 in l... 48 0.98 1
(BX323018) Zebrafish DNA sequence from clone DKEYP-77B4 in l... 48 0.98 1
(AC153803) Mus musculus 6 BAC RP24-276E19 (Roswell Park Canc... 48 0.98 1
(CR936286) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 48 0.98 1
(CR936247) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 48 0.98 1
(AC181354) Strongylocentrotus purpuratus clone R3-114I11, WO... 48 0.98 1
(AC168761) Strongylocentrotus purpuratus clone R3-3004F17, W... 48 0.98 1
(CT729305) Danio rerio EST, clone ZF_mu_237a11 3'. 48 0.98 1
(CT619397) Danio rerio EST, clone ZF_mu_43i16 3'. 48 0.98 1
(CT619396) Danio rerio EST, clone ZF_mu_43i16 5'. 48 0.98 1
(CT615235) Danio rerio EST, clone ZF_mu_64e01 3'. 48 0.98 1
(CF086731) QHM10O06.yg.ab1 QH_M sunflower H.argophyllus Heli... 48 0.98 1
(BI057741) PM4-GN0497-120301-002-e06 GN0497 Homo sapiens cDN... 48 0.98 1
(EJ162478) 1092344053535 Global-Ocean-Sampling_GS-27-01-01-1... 46 1.4 2
(AC221271) Bos taurus clone CH240-401L21, WORKING DRAFT SEQU... 36 1.6 6
(AC216409) Populus trichocarpa clone POP024-J08, complete se... 34 1.7 8
(AC099384) Rattus norvegicus clone CH230-181H12, WORKING DRA... 32 1.9 2
(AC180935) Strongylocentrotus purpuratus clone R3-3061J17, W... 32 1.9 2
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 32 2.0 14
(AC177320) Strongylocentrotus purpuratus clone R3-46F7, WORK... 32 2.0 2
(AC180671) Strongylocentrotus purpuratus clone R3-3019N20, W... 32 2.0 2
(AC168340) Strongylocentrotus purpuratus clone R3-58F3, WORK... 32 2.0 2
(AC179041) Strongylocentrotus purpuratus clone R3-4005C07, W... 32 2.0 2
(AC184312) Strongylocentrotus purpuratus clone R3-3093C24, W... 36 2.0 2
(AC184544) Strongylocentrotus purpuratus clone R3-10M4, WORK... 32 2.0 2
(AC168249) Strongylocentrotus purpuratus clone R3-1001J7, WO... 36 2.0 2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 34 2.0 17
(AC181957) Strongylocentrotus purpuratus clone R3-1003J22, W... 32 2.0 2
(AC201302) Strongylocentrotus purpuratus clone R3-16I20, WOR... 32 2.0 2
(AC018372) Homo sapiens clone RP11-3F19, WORKING DRAFT SEQUE... 40 2.8 4
(CU179655) Zebrafish DNA sequence from clone CH211-1J6. 46 3.9 1
(CU019646) Zebrafish DNA sequence from clone CH73-335L21 in ... 46 3.9 1
(BX663521) Zebrafish DNA sequence from clone DKEYP-50F5 in l... 46 3.9 1
(BX323029) Zebrafish DNA sequence from clone CH211-261O16. 46 3.9 1
(AL772340) Zebrafish DNA sequence from clone CH211-150G2 in ... 46 3.9 1
(AC122489) Mus musculus BAC clone RP24-386H10 from chromosom... 46 3.9 1
(AC121302) Mus musculus chromosome 13, clone RP23-163B12, co... 46 3.9 1
(CR382125) Kluyveromyces lactis strain NRRL Y-1140 chromosom... 46 3.9 1
(AF519916) Govenia liliacea tRNA-Leu (trnL) gene, partial se... 46 3.9 1
(AC160666) Bos taurus clone CH240-95I23, WORKING DRAFT SEQUE... 46 3.9 1
(AC153119) Rhinolophus ferrumequinum clone VMRC7-143H9, WORK... 46 3.9 1
(BX324220) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 46 3.9 1
(AC202326) Medicago truncatula clone mth2-166i10, WORKING DR... 46 3.9 1
(AC175508) Bos taurus clone CH240-144E17, *** SEQUENCING IN ... 46 3.9 1
(AC163380) Bos taurus clone CH240-130J22, WORKING DRAFT SEQU... 46 3.9 1
(ER915386) AH_PBa0037B17.g1 AH_PBa Amaranthus hypochondriacu... 46 3.9 1
(EK351916) 1095467989655 Global-Ocean-Sampling_GS-31-01-01-1... 46 3.9 1
(EK123126) 1092964807622 Global-Ocean-Sampling_GS-31-01-01-1... 46 3.9 1
(EK112986) 1092963140294 Global-Ocean-Sampling_GS-31-01-01-1... 46 3.9 1
(EJ423904) 1093012250117 Global-Ocean-Sampling_GS-28-01-01-1... 46 3.9 1
(DC273040) Oryzias latipes cDNA clone:olrf21h16, 3' end. 46 3.9 1
(DC254607) Oryzias latipes cDNA clone:olrfe13e19, 3' end. 46 3.9 1
(FE921791) DCAA-aaa27g10.b1 D.africanus_EST Ditylenchus afri... 46 3.9 1
(CP000849) Rickettsia bellii OSU 85-389, complete genome. 46 3.9 1
(CP000141) Carboxydothermus hydrogenoformans Z-2901, complet... 46 3.9 1
(CP000087) Rickettsia bellii RML369-C, complete genome. 46 3.9 1
(EK419372) 1095515491652 Global-Ocean-Sampling_GS-31-01-01-1... 44 4.9 2
(AU034911) Dictyostelium discoideum slug cDNA, clone SLE682. 36 5.3 3
(CZ515017) GMW2-86K17a.g1 GMW2 Glycine max genomic, genomic ... 38 5.5 2
(CP000728) Clostridium botulinum F str. Langeland, complete ... 34 5.7 2
(AC011327) Homo sapiens 3 BAC RP11-77I5 (Roswell Park Cancer... 42 5.9 6
(AY198133) Spiroplasma kunkelii strain CR2-3x partial genome... 36 6.6 5
(AC210348) Solanum lycopersicum chromosome 7 clone C07HBa001... 36 7.1 4
(AC180548) Strongylocentrotus purpuratus clone R3-3097C15, W... 32 7.2 2
(AC180415) Strongylocentrotus purpuratus clone R3-3104O14, W... 32 7.2 2
(AC018493) Homo sapiens chromosome 3 clone RP11-163M22 map 3... 42 7.5 6
(AM485732) Vitis vinifera, whole genome shotgun sequence, co... 36 8.2 3
(AX348987) Sequence 445 from Patent WO0202807. 44 8.3 2
(AX346116) Sequence 1187 from Patent WO0200928. 44 8.3 2
(AX344750) Sequence 175 from Patent WO0200927. 44 8.3 2
(AX344300) Sequence 147 from Patent WO0200926. 44 8.3 2
(AC176651) Strongylocentrotus purpuratus clone R3-112N20, WO... 40 8.8 9
(AX144742) Sequence 3464 from Patent WO0134809. 38 8.8 3
(AR485378) Sequence 3464 from patent US 6703492. 38 8.8 3
(AF269422) Staphylococcus epidermidis strain SR1 clone step.... 38 8.8 3

>(BJ445944) Dictyostelium discoideum cDNA clone:ddv61k05, 3' end,
single read.
Length = 794

Score = 1049 bits (529), Expect(3) = 0.0
Identities = 529/529 (100%)
Strand = Plus / Minus


Query: 613 ttattaaaaactcataaaaaccaattaaagaaacaaaaggatattgaaaagtttttgtca 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 ttattaaaaactcataaaaaccaattaaagaaacaaaaggatattgaaaagtttttgtca 735


Query: 673 actttaaacaaattaaatttacaaatgtttgatgctgatgctttaattaaagttgctttt 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 actttaaacaaattaaatttacaaatgtttgatgctgatgctttaattaaagttgctttt 675


Query: 733 gaaagtatctctttaaaaagaagtcatttagaagatatcaatgataaacaaaatcataaa 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 gaaagtatctctttaaaaagaagtcatttagaagatatcaatgataaacaaaatcataaa 615


Query: 793 gttaaagatgtacctgaacccgcaccaatttattatagatcaaaaattacaataccttct 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 gttaaagatgtacctgaacccgcaccaatttattatagatcaaaaattacaataccttct 555


Query: 853 gtaattttaaattctgatgattttgaattaatttgggcatggttaccaccaagattatca 912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gtaattttaaattctgatgattttgaattaatttgggcatggttaccaccaagattatca 495


Query: 913 gttgcaacaccaagaaaattattcaattcagttacagatggtaataatgttagattatta 972
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 gttgcaacaccaagaaaattattcaattcagttacagatggtaataatgttagattatta 435


Query: 973 tttgaaagtttagttgaacatacttgtattttagtagttttaaaatctgataatggaagt 1032
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tttgaaagtttagttgaacatacttgtattttagtagttttaaaatctgataatggaagt 375


Query: 1033 atttttggattttatagtgactctgaagttcaaccaaagtttggttttggtgatagaaat 1092
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 atttttggattttatagtgactctgaagttcaaccaaagtttggttttggtgatagaaat 315


Query: 1093 gtctttttattcactcttaaacctcatgttcatgtttataaaccaactg 1141
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gtctttttattcactcttaaacctcatgttcatgtttataaaccaactg 266

Score = 385 bits (194), Expect(3) = 0.0
Identities = 194/194 (100%)
Strand = Plus / Minus


Query: 1149 tcaattatatacaagttttaaagaacaatcaatttcaattggtcattcaaatttgggaga 1208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tcaattatatacaagttttaaagaacaatcaatttcaattggtcattcaaatttgggaga 199


Query: 1209 gataggattatttattggtgcagatttaaatggtaaaactggtgccacggaaacttttgg 1268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 gataggattatttattggtgcagatttaaatggtaaaactggtgccacggaaacttttgg 139


Query: 1269 aaacccatgtttgaatgataaagatcaacatactttccaaactattgttttagaagcatt 1328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 aaacccatgtttgaatgataaagatcaacatactttccaaactattgttttagaagcatt 79


Query: 1329 cacaattgaacaat 1342
||||||||||||||
Sbjct: 78 cacaattgaacaat 65

Score = 73.8 bits (37), Expect(3) = 0.0
Identities = 37/37 (100%)
Strand = Plus / Minus


Query: 1350 tataataacatgtaattataacaacaaataccaacaa 1386
|||||||||||||||||||||||||||||||||||||
Sbjct: 57 tataataacatgtaattataacaacaaataccaacaa 21

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,556,714,297
Number of extensions: 97422293
Number of successful extensions: 8303662
Number of sequences better than 10.0: 110
Length of query: 1506
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1482
Effective length of database: 97,308,875,965
Effective search space: 144211754180130
Effective search space used: 144211754180130
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.29
Homology vs Protein
Query= Contig-U11305-1 (Contig-U11305-1Q) /CSM_Contig/Contig-U11305-1Q.Seq.d
(1506 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

BX890617_4(BX890617|pid:none) Zebrafish DNA sequence from clone ... 80 3e-13
BC097465_1(BC097465|pid:none) Rattus norvegicus oxidation resist... 79 6e-13
AF333986_1(AF333986|pid:none) Rattus norvegicus nucleolar protei... 79 6e-13
AF324899_1(AF324899|pid:none) Mus musculus nucleolar protein C7 ... 78 7e-13
(Q4KMM3) RecName: Full=Oxidation resistance protein 1; AltName: ... 78 7e-13
BC089183_1(BC089183|pid:none) Mus musculus oxidation resistance ... 78 7e-13
AK296561_1(AK296561|pid:none) Homo sapiens cDNA FLJ56044 complet... 77 1e-12
AX405744_1(AX405744|pid:none) Sequence 159 from Patent WO0222660. 77 1e-12
BC098491_1(BC098491|pid:none) Mus musculus oxidation resistance ... 77 1e-12
CR860526_1(CR860526|pid:none) Pongo abelii mRNA; cDNA DKFZp468F0... 77 2e-12
AF309387_1(AF309387|pid:none) Homo sapiens oxidation protection ... 77 2e-12
AK000987_1(AK000987|pid:none) Homo sapiens cDNA FLJ10125 fis, cl... 75 5e-12
BC122724_1(BC122724|pid:none) Bos taurus oxidation resistance 1,... 74 1e-11
BC142527_1(BC142527|pid:none) Bos taurus oxidation resistance 1,... 74 1e-11
(A2ACG1) RecName: Full=Uncharacterized protein C20orf118 homolog... 70 2e-10
(Q0IID2) RecName: Full=Uncharacterized protein C20orf118 homolog... 67 2e-09
AC117076_61(AC117076|pid:none) Dictyostelium discoideum chromoso... 64 2e-08
(A0PJX2) RecName: Full=Uncharacterized protein C20orf118; &AK12... 63 2e-08
AE014187_645(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 63 3e-08
AK127563_1(AK127563|pid:none) Homo sapiens cDNA FLJ45656 fis, cl... 62 4e-08
BC149071_1(BC149071|pid:none) Bos taurus nuclear receptor coacti... 62 7e-08
CR859716_1(CR859716|pid:none) Pongo abelii mRNA; cDNA DKFZp469H0... 61 9e-08
BX537385_1(BX537385|pid:none) Homo sapiens mRNA; cDNA DKFZp686O0... 61 9e-08
AK294558_1(AK294558|pid:none) Homo sapiens cDNA FLJ53471 complet... 61 9e-08
BC033612_1(BC033612|pid:none) Homo sapiens nuclear receptor coac... 61 9e-08
AM392895_1(AM392895|pid:none) Synthetic construct Homo sapiens c... 61 1e-07
AM393871_1(AM393871|pid:none) Synthetic construct Homo sapiens c... 60 2e-07
AM393484_1(AM393484|pid:none) Synthetic construct Homo sapiens c... 60 2e-07
AM393507_1(AM393507|pid:none) Synthetic construct Homo sapiens c... 60 2e-07
AK128935_1(AK128935|pid:none) Mus musculus cDNA fis, clone TRACH... 58 8e-07
AK033503_1(AK033503|pid:none) Mus musculus adult male colon cDNA... 58 8e-07
BC076623_1(BC076623|pid:none) Mus musculus nuclear receptor coac... 58 8e-07
BC141150_1(BC141150|pid:none) Mus musculus nuclear receptor coac... 58 8e-07
(Q5ZMS4) RecName: Full=Nuclear receptor coactivator 7; &AJ71931... 57 1e-06
AE014134_3413(AE014134|pid:none) Drosophila melanogaster chromos... 55 7e-06
AE014134_3416(AE014134|pid:none) Drosophila melanogaster chromos... 55 7e-06
AE014134_3420(AE014134|pid:none) Drosophila melanogaster chromos... 55 7e-06
AE014134_3419(AE014134|pid:none) Drosophila melanogaster chromos... 55 7e-06
AY560121_1(AY560121|pid:none) Drosophila melanogaster CG9339-PH ... 54 1e-05
AK102978_1(AK102978|pid:none) Oryza sativa Japonica Group cDNA c... 53 3e-05
EU965027_1(EU965027|pid:none) Zea mays clone 283308 TLD family p... 52 4e-05
CR940348_369(CR940348|pid:none) Theileria annulata strain Ankara... 52 7e-05
AF345342_1(AF345342|pid:none) Arabidopsis thaliana T20G20.6/At2g... 51 1e-04
AB006700_2(AB006700|pid:none) Arabidopsis thaliana genomic DNA, ... 50 2e-04
AK083833_1(AK083833|pid:none) Mus musculus 12 days embryo spinal... 49 4e-04
AC146759_29(AC146759|pid:none) Medicago truncatula clone mth2-17... 49 4e-04
AK084693_1(AK084693|pid:none) Mus musculus 13 days embryo heart ... 49 4e-04
AK147647_1(AK147647|pid:none) Mus musculus adult male brain UNDE... 49 4e-04
AK086293_1(AK086293|pid:none) Mus musculus 15 days embryo head c... 49 4e-04
AK161054_1(AK161054|pid:none) Mus musculus 0 day neonate skin cD... 49 4e-04
(Q5ZJX5) RecName: Full=TLD domain-containing protein KIAA1609 ho... 49 5e-04
AL035708_4(AL035708|pid:none) Arabidopsis thaliana DNA chromosom... 49 6e-04
AB032997_1(AB032997|pid:none) Homo sapiens mRNA for KIAA1171 pro... 48 8e-04
(Q9ULP9) RecName: Full=TBC1 domain family member 24; &BC127015_... 48 8e-04
BC112389_1(BC112389|pid:none) Homo sapiens TBC1 domain family, m... 48 8e-04
(A1A5K6) RecName: Full=TBC1 domain family member 24; &BC128694_... 47 0.002
EF678322_1(EF678322|pid:none) Picea sitchensis clone WS02914_I07... 47 0.002
(Q08CX5) RecName: Full=TBC1 domain family member 24; &BC124045_... 45 0.005
CR940353_415(CR940353|pid:none) Theileria annulata strain Ankara... 45 0.007
(Q29RJ2) RecName: Full=TBC1 domain family member 24; &BC114148_... 44 0.015
AM466624_4(AM466624|pid:none) Vitis vinifera contig VV78X036762.... 44 0.015
CP000583_469(CP000583|pid:none) Ostreococcus lucimarinus CCE9901... 44 0.015
U41748_2(U41748|pid:none) Caenorhabditis elegans cosmid C31H2, c... 43 0.034
AP008218_291(AP008218|pid:none) Oryza sativa (japonica cultivar-... 42 0.045
BC100192_1(BC100192|pid:none) Xenopus laevis hypothetical protei... 42 0.045
EU962904_1(EU962904|pid:none) Zea mays clone 246386 unknown mRNA. 42 0.045
AP005101_13(AP005101|pid:none) Oryza sativa Japonica Group genom... 40 0.17
AB046829_1(AB046829|pid:none) Homo sapiens mRNA for KIAA1609 pro... 40 0.17
AB384249_1(AB384249|pid:none) Synthetic construct DNA, clone: pF... 40 0.17
AK291237_1(AK291237|pid:none) Homo sapiens cDNA FLJ75055 complet... 40 0.17
AM910989_170(AM910989|pid:none) Plasmodium knowlesi strain H chr... 40 0.17
(Q6P9B6) RecName: Full=TLD domain-containing protein KIAA1609; ... 40 0.17
AK300132_1(AK300132|pid:none) Homo sapiens cDNA FLJ59753 complet... 40 0.17
AK042369_1(AK042369|pid:none) Mus musculus 3 days neonate thymus... 39 0.49
FN357421_34(FN357421|pid:none) Schistosoma mansoni genome sequen... 38 1.1
AB065373_1(AB065373|pid:none) Gallus gallus mRNA for soluble vas... 37 1.9
(Q8QHL3) RecName: Full=Vascular endothelial growth factor recept... 37 1.9
BT085062_1(BT085062|pid:none) Zea mays full-length cDNA clone ZM... 35 5.5
DQ890022_375(DQ890022|pid:none) Paramecium bursaria Chlorella vi... 35 9.3
AM910991_10(AM910991|pid:none) Plasmodium knowlesi strain H chro... 35 9.3
AE001437_2781(AE001437|pid:none) Clostridium acetobutylicum ATCC... 35 9.3

>BX890617_4(BX890617|pid:none) Zebrafish DNA sequence from clone
DKEYP-84F11 in linkage group 19 Contains the 5' end of
the sf3b4 gene for splicing factor 3b, subunit 4, the
gene for a novel protein similar to vertebrate
apolipoprotein A-I binding protein (APOA1BP), the gene
for a novel protein similar to vertebrate oxidation
resistance 1 (OXR1), the gene for a novel protein similar
to vertebrate RAB25, member RAS oncogene family (RAB25),
the sdha gene for succinate dehydrogenase complex,
subunit A, flavoprotein (Fp), the gene for a novel
protein similar to vertebrate squalene epoxidase (SQLE),
the rxrb gene for retinoid x receptor, beta and a novel
gene, complete sequence.
Length = 749

Score = 79.7 bits (195), Expect = 3e-13
Identities = 57/193 (29%), Positives = 100/193 (51%), Gaps = 8/193 (4%)
Frame = +1

Query: 775 DKQNHKVKDVPEPAPIYYRSKITIPSVILNSDDFE----LIWAWLPPRLSVATPRKL-FN 939
++ N K+ +P P +R +T PSV+L + E + LPPR ++ P L F+
Sbjct: 558 EEVNSKLMVKSDPEPETFRPNLTEPSVLLQPEHIEKASYTLAKHLPPR-TIGYPWSLAFS 616

Query: 940 SVTDGNNVRLLFESLV-EHTCILVVLKSDNGSIFGFYSDSEVQPKFGF-GDRNVFLFTLK 1113
+ G +++ L+ ++ + + +L+V+K +G +FG + + GF G F+FT
Sbjct: 617 TSKHGMSMKSLYRAMQSQDSPVLMVIKDSDGQMFGALASQPFKVSDGFYGTGETFVFTFY 676

Query: 1114 PHVHVYKPTEKNQLYTSFKEQSISIGHSNLGEIGLFIGADL-NGKTGATETFGNPCLNDK 1290
P V+K T N + S+++G GE GL++ DL +G+T + +TFGNP L+
Sbjct: 677 PEFEVFKWTGDNMFFIKGDMDSLAVGGGG-GEFGLWLDGDLYHGRTHSCKTFGNPMLSKT 735

Query: 1291 DQHTFQTIVLEAF 1329
+ Q I + AF
Sbjct: 736 EDFFVQDIEIWAF 748

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,633,550,325
Number of extensions: 29292597
Number of successful extensions: 67210
Number of sequences better than 10.0: 81
Number of HSP's gapped: 67166
Number of HSP's successfully gapped: 81
Length of query: 502
Length of database: 1,040,966,779
Length adjustment: 133
Effective length of query: 369
Effective length of database: 614,796,874
Effective search space: 226860046506
Effective search space used: 226860046506
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.59 gvh: 0.35 alm: 0.37 top: 0.53 tms: 0.00 mit: 0.36 mip: 0.04
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

32.0 %: nuclear
28.0 %: mitochondrial
28.0 %: cytoplasmic
8.0 %: cytoskeletal
4.0 %: vesicles of secretory system

>> prediction for Contig-U11305-1 is nuc

VS (DIR, S) 2
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 2
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 2
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0