Contig-U11305-1 |
Contig ID |
Contig-U11305-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
gap included |
Contig length |
1496 |
Chromosome number (1..6, M) |
- |
Chromosome length |
- |
Start point |
- |
End point |
- |
Strand (PLUS/MINUS) |
- |
Number of clones |
8 |
Number of EST |
13 |
Link to clone list |
U11305 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.23 |
Homology vs DNA |
Query= Contig-U11305-1 (Contig-U11305-1Q) /CSM_Contig/Contig-U11305-1Q.Seq.d (1506 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ445944) Dictyostelium discoideum cDNA clone:ddv61k05, 3' ... 1049 0.0 3 (BJ350755) Dictyostelium discoideum cDNA clone:dda40m23, 3' ... 955 0.0 3 (BJ385714) Dictyostelium discoideum cDNA clone:ddc55l20, 3' ... 912 0.0 4 (BJ427058) Dictyostelium discoideum cDNA clone:ddv61k05, 5' ... 333 e-164 3 (AU038467) Dictyostelium discoideum slug cDNA, clone SSH756. 385 e-141 2 (C84230) Dictyostelium discoideum slug cDNA, clone SSB351. 341 e-132 3 (BJ332815) Dictyostelium discoideum cDNA clone:dda40m23, 5' ... 329 e-118 2 (BJ370906) Dictyostelium discoideum cDNA clone:ddc55l20, 5' ... 321 e-101 2 (AU265076) Dictyostelium discoideum vegetative cDNA clone:VS... 196 2e-83 2 (AU265077) Dictyostelium discoideum vegetative cDNA clone:VS... 174 6e-39 1 (AU073656) Dictyostelium discoideum slug cDNA, clone SSH756. 161 9e-35 1 (AC176391) Strongylocentrotus purpuratus clone R3-3048D22, W... 36 0.011 2 (AC201681) Strongylocentrotus purpuratus clone R3-3073H6, WO... 36 0.011 2 (EK447057) 1095467050485 Global-Ocean-Sampling_GS-32-01-01-1... 44 0.023 2 (EK467084) 1095469428048 Global-Ocean-Sampling_GS-32-01-01-1... 44 0.029 2 (AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 42 0.040 13 (BX897736) Zebrafish DNA sequence from clone CH211-181B15 in... 34 0.053 9 (EI988365) SB_BBc15-J18.R SB_BBc Sorghum bicolor genomic 3',... 36 0.19 2 (AC165562) Bos taurus clone CH240-173A3, WORKING DRAFT SEQUE... 50 0.25 1 (CF117358) fp463.z1 fp 73-75d fetal sheep skin library Ovis ... 50 0.25 1 (CU469464) Candidatus Phytoplasma mali strain AT complete ch... 34 0.29 22 (AC178025) Strongylocentrotus purpuratus clone R3-3055H16, W... 34 0.53 2 (AC200916) Strongylocentrotus purpuratus clone R3-1006I04, W... 34 0.54 2 (CU558784) Spc_12YJ21 cDNA clone of Developmental Stages Lib... 38 0.70 2 (EC819307) SME00006021 esmbsro2 Sawyeria marylandensis cDNA,... 32 0.78 3 (BX927325) Zebrafish DNA sequence from clone DKEYP-47G1 in l... 48 0.98 1 (BX323018) Zebrafish DNA sequence from clone DKEYP-77B4 in l... 48 0.98 1 (AC153803) Mus musculus 6 BAC RP24-276E19 (Roswell Park Canc... 48 0.98 1 (CR936286) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 48 0.98 1 (CR936247) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 48 0.98 1 (AC181354) Strongylocentrotus purpuratus clone R3-114I11, WO... 48 0.98 1 (AC168761) Strongylocentrotus purpuratus clone R3-3004F17, W... 48 0.98 1 (CT729305) Danio rerio EST, clone ZF_mu_237a11 3'. 48 0.98 1 (CT619397) Danio rerio EST, clone ZF_mu_43i16 3'. 48 0.98 1 (CT619396) Danio rerio EST, clone ZF_mu_43i16 5'. 48 0.98 1 (CT615235) Danio rerio EST, clone ZF_mu_64e01 3'. 48 0.98 1 (CF086731) QHM10O06.yg.ab1 QH_M sunflower H.argophyllus Heli... 48 0.98 1 (BI057741) PM4-GN0497-120301-002-e06 GN0497 Homo sapiens cDN... 48 0.98 1 (EJ162478) 1092344053535 Global-Ocean-Sampling_GS-27-01-01-1... 46 1.4 2 (AC221271) Bos taurus clone CH240-401L21, WORKING DRAFT SEQU... 36 1.6 6 (AC216409) Populus trichocarpa clone POP024-J08, complete se... 34 1.7 8 (AC099384) Rattus norvegicus clone CH230-181H12, WORKING DRA... 32 1.9 2 (AC180935) Strongylocentrotus purpuratus clone R3-3061J17, W... 32 1.9 2 (AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 32 2.0 14 (AC177320) Strongylocentrotus purpuratus clone R3-46F7, WORK... 32 2.0 2 (AC180671) Strongylocentrotus purpuratus clone R3-3019N20, W... 32 2.0 2 (AC168340) Strongylocentrotus purpuratus clone R3-58F3, WORK... 32 2.0 2 (AC179041) Strongylocentrotus purpuratus clone R3-4005C07, W... 32 2.0 2 (AC184312) Strongylocentrotus purpuratus clone R3-3093C24, W... 36 2.0 2 (AC184544) Strongylocentrotus purpuratus clone R3-10M4, WORK... 32 2.0 2 (AC168249) Strongylocentrotus purpuratus clone R3-1001J7, WO... 36 2.0 2 (AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 34 2.0 17 (AC181957) Strongylocentrotus purpuratus clone R3-1003J22, W... 32 2.0 2 (AC201302) Strongylocentrotus purpuratus clone R3-16I20, WOR... 32 2.0 2 (AC018372) Homo sapiens clone RP11-3F19, WORKING DRAFT SEQUE... 40 2.8 4 (CU179655) Zebrafish DNA sequence from clone CH211-1J6. 46 3.9 1 (CU019646) Zebrafish DNA sequence from clone CH73-335L21 in ... 46 3.9 1 (BX663521) Zebrafish DNA sequence from clone DKEYP-50F5 in l... 46 3.9 1 (BX323029) Zebrafish DNA sequence from clone CH211-261O16. 46 3.9 1 (AL772340) Zebrafish DNA sequence from clone CH211-150G2 in ... 46 3.9 1 (AC122489) Mus musculus BAC clone RP24-386H10 from chromosom... 46 3.9 1 (AC121302) Mus musculus chromosome 13, clone RP23-163B12, co... 46 3.9 1 (CR382125) Kluyveromyces lactis strain NRRL Y-1140 chromosom... 46 3.9 1 (AF519916) Govenia liliacea tRNA-Leu (trnL) gene, partial se... 46 3.9 1 (AC160666) Bos taurus clone CH240-95I23, WORKING DRAFT SEQUE... 46 3.9 1 (AC153119) Rhinolophus ferrumequinum clone VMRC7-143H9, WORK... 46 3.9 1 (BX324220) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 46 3.9 1 (AC202326) Medicago truncatula clone mth2-166i10, WORKING DR... 46 3.9 1 (AC175508) Bos taurus clone CH240-144E17, *** SEQUENCING IN ... 46 3.9 1 (AC163380) Bos taurus clone CH240-130J22, WORKING DRAFT SEQU... 46 3.9 1 (ER915386) AH_PBa0037B17.g1 AH_PBa Amaranthus hypochondriacu... 46 3.9 1 (EK351916) 1095467989655 Global-Ocean-Sampling_GS-31-01-01-1... 46 3.9 1 (EK123126) 1092964807622 Global-Ocean-Sampling_GS-31-01-01-1... 46 3.9 1 (EK112986) 1092963140294 Global-Ocean-Sampling_GS-31-01-01-1... 46 3.9 1 (EJ423904) 1093012250117 Global-Ocean-Sampling_GS-28-01-01-1... 46 3.9 1 (DC273040) Oryzias latipes cDNA clone:olrf21h16, 3' end. 46 3.9 1 (DC254607) Oryzias latipes cDNA clone:olrfe13e19, 3' end. 46 3.9 1 (FE921791) DCAA-aaa27g10.b1 D.africanus_EST Ditylenchus afri... 46 3.9 1 (CP000849) Rickettsia bellii OSU 85-389, complete genome. 46 3.9 1 (CP000141) Carboxydothermus hydrogenoformans Z-2901, complet... 46 3.9 1 (CP000087) Rickettsia bellii RML369-C, complete genome. 46 3.9 1 (EK419372) 1095515491652 Global-Ocean-Sampling_GS-31-01-01-1... 44 4.9 2 (AU034911) Dictyostelium discoideum slug cDNA, clone SLE682. 36 5.3 3 (CZ515017) GMW2-86K17a.g1 GMW2 Glycine max genomic, genomic ... 38 5.5 2 (CP000728) Clostridium botulinum F str. Langeland, complete ... 34 5.7 2 (AC011327) Homo sapiens 3 BAC RP11-77I5 (Roswell Park Cancer... 42 5.9 6 (AY198133) Spiroplasma kunkelii strain CR2-3x partial genome... 36 6.6 5 (AC210348) Solanum lycopersicum chromosome 7 clone C07HBa001... 36 7.1 4 (AC180548) Strongylocentrotus purpuratus clone R3-3097C15, W... 32 7.2 2 (AC180415) Strongylocentrotus purpuratus clone R3-3104O14, W... 32 7.2 2 (AC018493) Homo sapiens chromosome 3 clone RP11-163M22 map 3... 42 7.5 6 (AM485732) Vitis vinifera, whole genome shotgun sequence, co... 36 8.2 3 (AX348987) Sequence 445 from Patent WO0202807. 44 8.3 2 (AX346116) Sequence 1187 from Patent WO0200928. 44 8.3 2 (AX344750) Sequence 175 from Patent WO0200927. 44 8.3 2 (AX344300) Sequence 147 from Patent WO0200926. 44 8.3 2 (AC176651) Strongylocentrotus purpuratus clone R3-112N20, WO... 40 8.8 9 (AX144742) Sequence 3464 from Patent WO0134809. 38 8.8 3 (AR485378) Sequence 3464 from patent US 6703492. 38 8.8 3 (AF269422) Staphylococcus epidermidis strain SR1 clone step.... 38 8.8 3
>(BJ445944) Dictyostelium discoideum cDNA clone:ddv61k05, 3' end, single read. Length = 794
Score = 1049 bits (529), Expect(3) = 0.0 Identities = 529/529 (100%) Strand = Plus / Minus
Query: 613 ttattaaaaactcataaaaaccaattaaagaaacaaaaggatattgaaaagtttttgtca 672 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 794 ttattaaaaactcataaaaaccaattaaagaaacaaaaggatattgaaaagtttttgtca 735
Query: 673 actttaaacaaattaaatttacaaatgtttgatgctgatgctttaattaaagttgctttt 732 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 734 actttaaacaaattaaatttacaaatgtttgatgctgatgctttaattaaagttgctttt 675
Query: 733 gaaagtatctctttaaaaagaagtcatttagaagatatcaatgataaacaaaatcataaa 792 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 674 gaaagtatctctttaaaaagaagtcatttagaagatatcaatgataaacaaaatcataaa 615
Query: 793 gttaaagatgtacctgaacccgcaccaatttattatagatcaaaaattacaataccttct 852 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 614 gttaaagatgtacctgaacccgcaccaatttattatagatcaaaaattacaataccttct 555
Query: 853 gtaattttaaattctgatgattttgaattaatttgggcatggttaccaccaagattatca 912 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 554 gtaattttaaattctgatgattttgaattaatttgggcatggttaccaccaagattatca 495
Query: 913 gttgcaacaccaagaaaattattcaattcagttacagatggtaataatgttagattatta 972 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 494 gttgcaacaccaagaaaattattcaattcagttacagatggtaataatgttagattatta 435
Query: 973 tttgaaagtttagttgaacatacttgtattttagtagttttaaaatctgataatggaagt 1032 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 434 tttgaaagtttagttgaacatacttgtattttagtagttttaaaatctgataatggaagt 375
Query: 1033 atttttggattttatagtgactctgaagttcaaccaaagtttggttttggtgatagaaat 1092 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 374 atttttggattttatagtgactctgaagttcaaccaaagtttggttttggtgatagaaat 315
Query: 1093 gtctttttattcactcttaaacctcatgttcatgtttataaaccaactg 1141 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 314 gtctttttattcactcttaaacctcatgttcatgtttataaaccaactg 266
Score = 385 bits (194), Expect(3) = 0.0 Identities = 194/194 (100%) Strand = Plus / Minus
Query: 1149 tcaattatatacaagttttaaagaacaatcaatttcaattggtcattcaaatttgggaga 1208 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 258 tcaattatatacaagttttaaagaacaatcaatttcaattggtcattcaaatttgggaga 199
Query: 1209 gataggattatttattggtgcagatttaaatggtaaaactggtgccacggaaacttttgg 1268 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 198 gataggattatttattggtgcagatttaaatggtaaaactggtgccacggaaacttttgg 139
Query: 1269 aaacccatgtttgaatgataaagatcaacatactttccaaactattgttttagaagcatt 1328 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 138 aaacccatgtttgaatgataaagatcaacatactttccaaactattgttttagaagcatt 79
Query: 1329 cacaattgaacaat 1342 |||||||||||||| Sbjct: 78 cacaattgaacaat 65
Score = 73.8 bits (37), Expect(3) = 0.0 Identities = 37/37 (100%) Strand = Plus / Minus
Query: 1350 tataataacatgtaattataacaacaaataccaacaa 1386 ||||||||||||||||||||||||||||||||||||| Sbjct: 57 tataataacatgtaattataacaacaaataccaacaa 21
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 1,556,714,297 Number of extensions: 97422293 Number of successful extensions: 8303662 Number of sequences better than 10.0: 110 Length of query: 1506 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 1482 Effective length of database: 97,308,875,965 Effective search space: 144211754180130 Effective search space used: 144211754180130 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 6.29 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
2 |
VH (FL, L) |
1 |
VF (FL, S) |
0 |
AH (FL, L) |
2 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
2 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
1 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |