| Contig-U11300-1 |
| Contig ID |
Contig-U11300-1 |
| Contig update |
2002.12.18 |
| Contig sequence |
 |
| Gap |
gap included |
| Contig length |
2050 |
| Chromosome number (1..6, M) |
2 |
| Chromosome length |
8467578 |
| Start point |
5810465 |
| End point |
5812329 |
| Strand (PLUS/MINUS) |
PLUS |
| Number of clones |
24 |
| Number of EST |
41 |
| Link to clone list |
U11300 |
| List of clone(s) |
est1=SHB794F,0,813
est2=SHI215F,1,852
est3=VHA310F,12,842
est4=AHJ392F,13,863
est5=AHG479F,15,780
est6=AHQ489F,16,920
est7=SHJ385F,16,867
est8=AHH650F,17,863
est9=VHF328F,18,872
est10=AHK868F,22,887
est11=VHD124F,22,872
est12=VHG644F,22,897
est13=VHP540F,24,877
est14=AHH702F,26,133
est15=AHH383F,27,845
est16=VHN130F,32,874
est17=AHJ821F,33,851
est18=AHL408F,33,874
est19=AHE533F,45,926
est20=AHM156F,54,712
est21=SHG395F,55,190
est22=AHP230F,65,602
est23=VHK870F,178,926
est24=AHJ821Z,927,1595
est25=VHN130Z,997,1787
est26=AHK868Z,1012,1757
est27=VHA310Z,1021,1784
est28=AHJ392Z,1048,1386
est29=AHH650Z,1091,1790
est30=VHP540Z,1091,1790
est31=VHK870Z,1093,1788
est32=VHQ361Z,1093,1779
est33=AHE533Z,1149,1791
est34=VHD124Z,1151,1790
est35=VHG644Z,1157,1789
est36=AHH702Z,1159,1779
est37=AHG479Z,1216,1790
est38=AHM156Z,1238,1939
est39=VHF328Z,1327,1789
est40=SHG395Z,1462,1680
est41=SHB794Z,1473,1935
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2008.11.23 |
| Homology vs DNA |
Query= Contig-U11300-1 (Contig-U11300-1Q) /CSM_Contig/Contig-U11300-1Q.Seq.d
(2060 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ335344) Dictyostelium discoideum cDNA clone:dda49h23, 5' ... 1459 0.0 2
(BJ396419) Dictyostelium discoideum cDNA clone:dds42j21, 5' ... 1433 0.0 3
(BJ336236) Dictyostelium discoideum cDNA clone:dda53p02, 5' ... 1425 0.0 4
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-... 1419 0.0 7
(BJ420990) Dictyostelium discoideum cDNA clone:ddv41h07, 5' ... 1415 0.0 3
(BJ338995) Dictyostelium discoideum cDNA clone:dda63b24, 5' ... 1411 0.0 3
(BJ421943) Dictyostelium discoideum cDNA clone:ddv44g12, 5' ... 1405 0.0 4
(BJ336059) Dictyostelium discoideum cDNA clone:dda52h18, 5' ... 1405 0.0 4
(BJ427445) Dictyostelium discoideum cDNA clone:ddv62o09, 5' ... 1403 0.0 4
(BJ417913) Dictyostelium discoideum cDNA clone:ddv31d03, 5' ... 1400 0.0 4
(BJ334461) Dictyostelium discoideum cDNA clone:dda46c14, 5' ... 1398 0.0 2
(BJ334292) Dictyostelium discoideum cDNA clone:dda45f21, 5' ... 1392 0.0 4
(BJ332891) Dictyostelium discoideum cDNA clone:dda40a09, 5' ... 1344 0.0 6
(BJ392509) Dictyostelium discoideum cDNA clone:dds27l23, 5' ... 1342 0.0 3
(BJ335416) Dictyostelium discoideum cDNA clone:dda50j06, 5' ... 1334 0.0 4
(BJ425879) Dictyostelium discoideum cDNA clone:ddv57k07, 5' ... 1316 0.0 4
(BJ419785) Dictyostelium discoideum cDNA clone:ddv37o05, 5' ... 1302 0.0 6
(BJ395790) Dictyostelium discoideum cDNA clone:dds40m04, 5' ... 1300 0.0 4
(BJ336936) Dictyostelium discoideum cDNA clone:dda55o13, 5' ... 1251 0.0 1
(BJ333761) Dictyostelium discoideum cDNA clone:dda43n20, 5' ... 1172 0.0 5
(BJ444761) Dictyostelium discoideum cDNA clone:ddv57k07, 3' ... 1106 0.0 4
(BJ424506) Dictyostelium discoideum cDNA clone:ddv52l18, 5' ... 1098 0.0 6
(BJ353425) Dictyostelium discoideum cDNA clone:dda50j06, 3' ... 1078 0.0 4
(BJ354120) Dictyostelium discoideum cDNA clone:dda52h18, 3' ... 1066 0.0 2
(BJ436391) Dictyostelium discoideum cDNA clone:ddv31d03, 3' ... 1059 0.0 3
(BJ409673) Dictyostelium discoideum cDNA clone:dds42j21, 3' ... 918 0.0 3
(BJ443352) Dictyostelium discoideum cDNA clone:ddv52l18, 3' ... 916 0.0 3
(BJ352363) Dictyostelium discoideum cDNA clone:dda46c14, 3' ... 910 0.0 2
(BJ446717) Dictyostelium discoideum cDNA clone:ddv63j15, 3' ... 908 0.0 3
(BJ350548) Dictyostelium discoideum cDNA clone:dda40a09, 3' ... 803 0.0 2
(BJ446353) Dictyostelium discoideum cDNA clone:ddv62o09, 3' ... 801 0.0 2
(BJ438533) Dictyostelium discoideum cDNA clone:ddv37o05, 3' ... 801 0.0 2
(BJ440649) Dictyostelium discoideum cDNA clone:ddv44g12, 3' ... 789 0.0 2
(BJ352211) Dictyostelium discoideum cDNA clone:dda46d01, 3' ... 783 0.0 4
(BJ351573) Dictyostelium discoideum cDNA clone:dda43n20, 3' ... 662 0.0 3
(BJ355080) Dictyostelium discoideum cDNA clone:dda55o13, 3' ... 626 0.0 6
(BJ338403) Dictyostelium discoideum cDNA clone:dda61k08, 5' ... 924 0.0 2
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 377 0.0 6
(BJ439706) Dictyostelium discoideum cDNA clone:ddv41h07, 3' ... 438 0.0 2
(BJ353352) Dictyostelium discoideum cDNA clone:dda49h23, 3' ... 664 0.0 1
(BJ404248) Dictyostelium discoideum cDNA clone:dds27l23, 3' ... 313 e-169 5
(BJ406936) Dictyostelium discoideum cDNA clone:dds36n23, 3' ... 172 3e-76 2
(BJ394907) Dictyostelium discoideum cDNA clone:dds36n23, 5' ... 218 6e-52 1
(BJ334348) Dictyostelium discoideum cDNA clone:dda46d01, 5' ... 131 1e-25 1
(CK592765) est_l_vannamei9423 LvB-LD80RG Litopenaeus vanname... 32 1e-10 8
(EL497872) PFLAB1-L_F3_-P18A_D10_08.AB1 Blood stage Plasmodi... 30 2e-06 6
(AL844507) Plasmodium falciparum chromosome 8. 34 0.002 20
(ET319483) S0217P07_SP6 CHORI-214 Salmo salar genomic clone ... 32 0.003 4
(ET231518) S0234J07_T7 CHORI-214 Salmo salar genomic clone S... 32 0.005 4
(EV368575) EST_cclu_evb_704616 ccluevb mixed_tissue Coregonu... 34 0.012 3
(AC115684) Dictyostelium discoideum chromosome 2 map 3108975... 42 0.015 2
(AC174872) Strongylocentrotus purpuratus clone R3-114A16, WO... 40 0.019 10
(AC005507) Plasmodium falciparum chromosome 12 clone 3D7, **... 32 0.022 13
(AC214595) Populus trichocarpa clone POP016-E18, complete se... 54 0.022 1
(BJ356773) Dictyostelium discoideum cDNA clone:dda61k08, 3' ... 38 0.027 3
(AC177247) Strongylocentrotus purpuratus clone R3-43E18, WOR... 32 0.028 11
(BJ352247) Dictyostelium discoideum cDNA clone:dda46k01, 3' ... 38 0.037 3
(BJ357503) Dictyostelium discoideum cDNA clone:dda63b24, 3' ... 38 0.038 3
(BJ354312) Dictyostelium discoideum cDNA clone:dda53p02, 3' ... 38 0.039 3
(BJ352149) Dictyostelium discoideum cDNA clone:dda45f21, 3' ... 38 0.040 3
(AE014849) Plasmodium falciparum 3D7 chromosome 12, section ... 32 0.072 14
(AC209000) Populus trichocarpa clone POP023-H09, complete se... 52 0.086 1
(AC213413) Populus trichocarpa clone POP014-E15, complete se... 44 0.29 6
(EL505419) G05_2203_302.AB1 Blood stage Plasmodium falciparu... 28 0.33 5
(AC201662) Strongylocentrotus purpuratus clone R3-3092P11, W... 50 0.34 1
(BX649626) Zebrafish DNA sequence from clone CH211-148N10 in... 34 0.35 9
(EL502035) A07_PFLAB1-L-PLATE1B.AB1 Blood stage Plasmodium f... 28 0.43 5
(EL505398) G04_2203_1.AB1 Blood stage Plasmodium falciparum ... 28 0.45 5
(AM051830) Dasytricha ruminantium EST, clone Dr02_A03. 28 0.55 5
(DD061443) Methods and nucleic acids for the analysis of he... 40 0.60 5
(AX599005) Sequence 345 from Patent WO02077272. 40 0.60 5
(DR756553) USDA-FP_116800-008 adult black-winged sharpshoote... 36 0.95 2
(DN471952) USDA-FP_145942 Adult sharpshooter leafhopper Onco... 36 0.95 2
(BQ201103) UI-R-EB1-clp-n-11-0-UI.s1 UI-R-EB1 Rattus norvegi... 38 0.96 2
(AC024304) Homo sapiens clone RP11-23O14, WORKING DRAFT SEQU... 42 1.0 7
(AM472349) Vitis vinifera, whole genome shotgun sequence, co... 36 1.2 5
(AC214030) Populus trichocarpa clone POP037-F08, complete se... 48 1.3 1
(AC209038) Populus trichocarpa clone POP007-J20, complete se... 48 1.3 1
(AP005623) Homo sapiens genomic DNA, chromosome 8q23, clone:... 48 1.3 1
(AC064802) Homo sapiens chromosome 8, clone RP11-267L5, comp... 48 1.3 1
(EJ961369) 1093022004955 Global-Ocean-Sampling_GS-30-02-01-1... 48 1.3 1
(BF325335) su32d04.y1 Gm-c1068 Glycine max cDNA clone GENOME... 48 1.3 1
(EX825646) CcLXMa69j05n1 Montse common carp adult head and k... 48 1.3 1
(AC159926) Atelerix albiventris clone LB4-28D12, WORKING DRA... 38 1.4 8
(BJ436243) Dictyostelium discoideum cDNA clone:ddv30d15, 3' ... 44 2.1 2
(N97456) 0912M7 gmbPfHB3.1, G. Roman Reddy Plasmodium falcip... 28 2.1 4
(BJ339974) Dictyostelium discoideum cDNA clone:dda11l06, 3' ... 44 2.1 2
(AX767545) Sequence 193 from Patent WO03044226. 40 2.2 5
(AL844506) Plasmodium falciparum chromosome 7. 34 2.5 17
(DD392024) Method and nucleic acids for the improved treatme... 40 2.6 5
(DD391750) Method and nucleic acids for the improved treatme... 40 2.6 5
(CQ807280) Sequence 730 from Patent WO2004035803. 40 2.6 5
(CQ807006) Sequence 456 from Patent WO2004035803. 40 2.6 5
(AE014850) Plasmodium falciparum 3D7 chromosome 12, section ... 36 2.6 12
(BU494672) PfESToab66a07.y1 Plasmodium falciparum 3D7 asexua... 28 2.9 5
(AL929355) Plasmodium falciparum strain 3D7, chromosome 9; s... 34 3.0 12
(AM484747) Vitis vinifera contig VV78X063792.2, whole genome... 42 3.1 4
(CU855934) Zebrafish DNA sequence from clone CH1073-263M13. 44 3.2 3
(AE014841) Plasmodium falciparum 3D7 chromosome 11 section 6... 34 3.3 16
(CE621797) tigr-gss-dog-17000313636445 Dog Library Canis lup... 32 3.5 2
>(BJ335344) Dictyostelium discoideum cDNA clone:dda49h23, 5' end,
single read.
Length = 842
Score = 1459 bits (736), Expect(2) = 0.0
Identities = 736/736 (100%)
Strand = Plus / Plus
Query: 16 aaatctcaaacaaacacatttaaaagagcgaatcagagttcttttgttcattttaaaatg 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 aaatctcaaacaaacacatttaaaagagcgaatcagagttcttttgttcattttaaaatg 63
Query: 76 caaaaaataaaagaggggtacaggaggagacatgattatatcattcctaaatttatatcc 135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 caaaaaataaaagaggggtacaggaggagacatgattatatcattcctaaatttatatcc 123
Query: 136 tttcaatctggatatctcgatttctcattttatcaagtatcgctaaaaaatgtgaagtat 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 tttcaatctggatatctcgatttctcattttatcaagtatcgctaaaaaatgtgaagtat 183
Query: 196 ctcgatttatcatcgtattatcaattacacgcaccaagaagatttcgaaaaattgtggag 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 ctcgatttatcatcgtattatcaattacacgcaccaagaagatttcgaaaaattgtggag 243
Query: 256 tatctaaatttatcatatggtcaattactcacactaggaacattgccaaaatatgtgatg 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tatctaaatttatcatatggtcaattactcacactaggaacattgccaaaatatgtgatg 303
Query: 316 tctctcgatttatcatcatataatcaactattcacaccaggaagattgccaattagggtg 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tctctcgatttatcatcatataatcaactattcacaccaggaagattgccaattagggtg 363
Query: 376 tctctcgatttatcatcatataatcaactattcacaccaggaagattgccagatactgtg 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tctctcgatttatcatcatataatcaactattcacaccaggaagattgccagatactgtg 423
Query: 436 gattatctcaaattatcatcctataatcaactattcacaccaggaacattgccaaatcat 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gattatctcaaattatcatcctataatcaactattcacaccaggaacattgccaaatcat 483
Query: 496 atggtttatctcaatttatcatcctataatcaaccattaacacctggaacattaccaaat 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 atggtttatctcaatttatcatcctataatcaaccattaacacctggaacattaccaaat 543
Query: 556 aaggtgaagtatctcgttttatcatcgtataatcaattactcacacctggaacattacca 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 aaggtgaagtatctcgttttatcatcgtataatcaattactcacacctggaacattacca 603
Query: 616 aataatgtgaagtatgtcgatttatcatcatataataaattactcacacctgaaacatta 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 aataatgtgaagtatgtcgatttatcatcatataataaattactcacacctgaaacatta 663
Query: 676 ccaaataaggtgaagtatctcgttttatcatcgtatgatcaattactcacacctgggaac 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 ccaaataaggtgaagtatctcgttttatcatcgtatgatcaattactcacacctgggaac 723
Query: 736 attaccaaataatgtg 751
||||||||||||||||
Sbjct: 724 attaccaaataatgtg 739
Score = 182 bits (92), Expect(2) = 0.0
Identities = 99/102 (97%)
Strand = Plus / Plus
Query: 752 gaagtgtgtcgatttatcatcatatgataaattactcacacctggaacattaccaaataa 811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 gaagtgtgtcgatttatcatcatatgataaattactcacacctggaacattaccaaataa 798
Query: 812 tggggaagtatggtcgatttatcatcatataataaattactc 853
|| ||||||||| ||||||||||||||||||||||||||||
Sbjct: 799 tgnggaagtatgnccgatttatcatcatataataaattactc 840
Score = 178 bits (90), Expect(9) = e-135
Identities = 141/158 (89%)
Strand = Plus / Plus
Query: 573 tttatcatcgtataatcaattactcacacctggaacattaccaaataatgtgaagtatgt 632
||||||||| ||||||||| | | ||||||||||||||||||||||| ||||||||| |
Sbjct: 498 tttatcatcctataatcaaccattaacacctggaacattaccaaataaggtgaagtatct 557
Query: 633 cgatttatcatcatataataaattactcacacctgaaacattaccaaataaggtgaagta 692
|| ||||||||| |||||| ||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 558 cgttttatcatcgtataatcaattactcacacctggaacattaccaaataatgtgaagta 617
Query: 693 tctcgttttatcatcgtatgatcaattactcacacctg 730
| ||| ||||||||| ||| || |||||||||||||||
Sbjct: 618 tgtcgatttatcatcatataataaattactcacacctg 655
Score = 119 bits (60), Expect(9) = e-135
Identities = 96/108 (88%)
Strand = Plus / Plus
Query: 448 ttatcatcctataatcaactattcacaccaggaacattgccaaatcatatggtttatctc 507
|||||||| ||||||||||||||||||||||||| ||||||| || | ||| |||||||
Sbjct: 373 ttatcatcatataatcaactattcacaccaggaagattgccagatactgtggattatctc 432
Query: 508 aatttatcatcctataatcaaccattaacacctggaacattaccaaat 555
|| ||||||||||||||||||| ||| ||||| |||||||| ||||||
Sbjct: 433 aaattatcatcctataatcaactattcacaccaggaacattgccaaat 480
Score = 105 bits (53), Expect(9) = e-135
Identities = 53/53 (100%)
Strand = Plus / Plus
Query: 374 tgtctctcgatttatcatcatataatcaactattcacaccaggaagattgcca 426
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tgtctctcgatttatcatcatataatcaactattcacaccaggaagattgcca 354
Score = 85.7 bits (43), Expect(9) = e-135
Identities = 52/55 (94%)
Strand = Plus / Plus
Query: 824 gtcgatttatcatcatataataaattactcacacctagaacattacccaataatg 878
|||||||||||||||||| ||||||||||||||||| |||||||||| |||||||
Sbjct: 746 gtcgatttatcatcatatgataaattactcacacctggaacattaccaaataatg 800
Score = 50.1 bits (25), Expect(9) = e-135
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 764 tttatcatcatatgataaattactcacacctgg 796
||||||||| |||||| ||||||||||||||||
Sbjct: 687 tttatcatcgtatgatcaattactcacacctgg 719
Score = 40.1 bits (20), Expect(9) = e-135
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 303 aaaatatgtgatgtctctcgatttatcatcatataatcaa 342
|||| |||||| || ||||||||||||||| ||| |||||
Sbjct: 168 aaaaaatgtgaagtatctcgatttatcatcgtattatcaa 207
Score = 38.2 bits (19), Expect(9) = e-135
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 795 ggaacattaccaaataatg 813
|||||||||||||||||||
Sbjct: 719 ggaacattaccaaataatg 737
Score = 38.2 bits (19), Expect(9) = e-135
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1016 cgatttatcatcatataat 1034
|||||||||||||||||||
Sbjct: 813 cgatttatcatcatataat 831
Score = 30.2 bits (15), Expect(9) = e-135
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 733 aacattaccaaataa 747
|||||||||||||||
Sbjct: 657 aacattaccaaataa 671
Score = 178 bits (90), Expect(6) = e-130
Identities = 141/158 (89%)
Strand = Plus / Plus
Query: 510 tttatcatcctataatcaaccattaacacctggaacattaccaaataaggtgaagtatct 569
||||||||| ||||||||| | | ||||||||||||||||||||||| ||||||||| |
Sbjct: 561 tttatcatcgtataatcaattactcacacctggaacattaccaaataatgtgaagtatgt 620
Query: 570 cgttttatcatcgtataatcaattactcacacctggaacattaccaaataatgtgaagta 629
|| ||||||||| |||||| ||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 621 cgatttatcatcatataataaattactcacacctgaaacattaccaaataaggtgaagta 680
Query: 630 tgtcgatttatcatcatataataaattactcacacctg 667
| ||| ||||||||| ||| || |||||||||||||||
Sbjct: 681 tctcgttttatcatcgtatgatcaattactcacacctg 718
Score = 119 bits (60), Expect(6) = e-130
Identities = 96/108 (88%)
Strand = Plus / Plus
Query: 385 ttatcatcatataatcaactattcacaccaggaagattgccagatactgtggattatctc 444
|||||||| ||||||||||||||||||||||||| ||||||| || | ||| |||||||
Sbjct: 436 ttatcatcctataatcaactattcacaccaggaacattgccaaatcatatggtttatctc 495
Query: 445 aaattatcatcctataatcaactattcacaccaggaacattgccaaat 492
|| ||||||||||||||||||| ||| ||||| |||||||| ||||||
Sbjct: 496 aatttatcatcctataatcaaccattaacacctggaacattaccaaat 543
Score = 105 bits (53), Expect(6) = e-130
Identities = 53/53 (100%)
Strand = Plus / Plus
Query: 314 tgtctctcgatttatcatcatataatcaactattcacaccaggaagattgcca 366
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tgtctctcgatttatcatcatataatcaactattcacaccaggaagattgcca 414
Score = 77.8 bits (39), Expect(6) = e-130
Identities = 57/63 (90%)
Strand = Plus / Plus
Query: 669 aacattaccaaataaggtgaagtatctcgttttatcatcgtatgatcaattactcacacc 728
||||||||||||||| ||||||| | ||| ||||||||| |||||| |||||||||||||
Sbjct: 721 aacattaccaaataatgtgaagtgtgtcgatttatcatcatatgataaattactcacacc 780
Query: 729 tgg 731
|||
Sbjct: 781 tgg 783
Score = 48.1 bits (24), Expect(6) = e-130
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 761 cgatttatcatcatatgataaattactc 788
|||||||||||||||| |||||||||||
Sbjct: 813 cgatttatcatcatataataaattactc 840
Score = 46.1 bits (23), Expect(6) = e-130
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 731 ggaacattaccaaataatgtggaagt 756
||||||||||||||||||| ||||||
Sbjct: 782 ggaacattaccaaataatgnggaagt 807
Score = 129 bits (65), Expect(7) = 1e-80
Identities = 89/97 (91%)
Strand = Plus / Plus
Query: 635 atttatcatcatataataaattactcacacctgaaacattaccaaataaggtgaagtatc 694
|||||||||| |||||| || | | ||||||| ||||||||||||||||||||||||||
Sbjct: 497 atttatcatcctataatcaaccattaacacctggaacattaccaaataaggtgaagtatc 556
Query: 695 tcgttttatcatcgtatgatcaattactcacacctgg 731
||||||||||||||||| |||||||||||||||||||
Sbjct: 557 tcgttttatcatcgtataatcaattactcacacctgg 593
Score = 95.6 bits (48), Expect(7) = 1e-80
Identities = 57/60 (95%)
Strand = Plus / Plus
Query: 752 gaagtgtgtcgatttatcatcatatgataaattactcacacctggaacattaccaaataa 811
||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 612 gaagtatgtcgatttatcatcatataataaattactcacacctgaaacattaccaaataa 671
Score = 69.9 bits (35), Expect(7) = 1e-80
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 325 ttatcatcatataatcaactattcacaccaggaagattgccaa 367
|||||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 436 ttatcatcctataatcaactattcacaccaggaacattgccaa 478
Score = 48.1 bits (24), Expect(7) = 1e-80
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 888 ctcggtttatcatcgtataatcaattactcncncctgg 925
|||| ||||||||||||| ||||||||||| | |||||
Sbjct: 682 ctcgttttatcatcgtatgatcaattactcacacctgg 719
Score = 42.1 bits (21), Expect(7) = 1e-80
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 731 ggaacattaccaaataatgtg 751
|||||||||||||||||||||
Sbjct: 592 ggaacattaccaaataatgtg 612
Score = 40.1 bits (20), Expect(7) = 1e-80
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 180 aaaaaatgtgaagtatctcgatttatcatcgtattatcaa 219
|||| |||||| || ||||||||||||||| ||| |||||
Sbjct: 291 aaaatatgtgatgtctctcgatttatcatcatataatcaa 330
Score = 32.2 bits (16), Expect(7) = 1e-80
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1016 cgatttatcatcatat 1031
||||||||||||||||
Sbjct: 748 cgatttatcatcatat 763
Score = 135 bits (68), Expect(5) = 6e-75
Identities = 77/80 (96%)
Strand = Plus / Plus
Query: 604 ggaacattaccaaataatgtgaagtatgtcgatttatcatcatataataaattactcaca 663
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 719 ggaacattaccaaataatgtgaagtgtgtcgatttatcatcatatgataaattactcaca 778
Query: 664 cctgaaacattaccaaataa 683
|||| |||||||||||||||
Sbjct: 779 cctggaacattaccaaataa 798
Score = 129 bits (65), Expect(5) = 6e-75
Identities = 89/97 (91%)
Strand = Plus / Plus
Query: 509 atttatcatcctataatcaaccattaacacctggaacattaccaaataaggtgaagtatc 568
|||||||||| |||||| || | | ||||||| ||||||||||||||||||||||||||
Sbjct: 623 atttatcatcatataataaattactcacacctgaaacattaccaaataaggtgaagtatc 682
Query: 569 tcgttttatcatcgtataatcaattactcacacctgg 605
||||||||||||||||| |||||||||||||||||||
Sbjct: 683 tcgttttatcatcgtatgatcaattactcacacctgg 719
Score = 69.9 bits (35), Expect(5) = 6e-75
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 448 ttatcatcctataatcaactattcacaccaggaacattgccaa 490
|||||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 313 ttatcatcatataatcaactattcacaccaggaagattgccaa 355
Score = 34.2 bits (17), Expect(5) = 6e-75
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 378 tctcgatttatcatcatataatcaa 402
||||||||||||||| ||| |||||
Sbjct: 183 tctcgatttatcatcgtattatcaa 207
Score = 26.3 bits (13), Expect(5) = 6e-75
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 960 tcatcatataatcaatt 976
|||||||||||| ||||
Sbjct: 820 tcatcatataataaatt 836
Score = 81.8 bits (41), Expect(5) = 4e-52
Identities = 50/53 (94%)
Strand = Plus / Plus
Query: 824 gtcgatttatcatcatataataaattactcacacctagaacattacccaataa 876
|||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 619 gtcgatttatcatcatataataaattactcacacctgaaacattaccaaataa 671
Score = 75.8 bits (38), Expect(5) = 4e-52
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 764 tttatcatcatatgataaattactcacacctggaacattaccaaataatg 813
||||||||| ||| || |||||||||||||||||||||||||||||||||
Sbjct: 561 tttatcatcgtataatcaattactcacacctggaacattaccaaataatg 610
Score = 67.9 bits (34), Expect(5) = 4e-52
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 588 tcaattactcacacctggaacattaccaaataatgtgaagtatgtcgatttatcatcata 647
|||||||||||||| |||||||| ||||| |||||| || | ||||||||||||||||
Sbjct: 264 tcaattactcacactaggaacattgccaaaatatgtgatgtctctcgatttatcatcata 323
Query: 648 taataaattactcacacc 665
|||| || || |||||||
Sbjct: 324 taatcaactattcacacc 341
Score = 58.0 bits (29), Expect(5) = 4e-52
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 559 gtgaagtatctcgttttatcatcgtataatcaattac 595
||||||||||||| ||||||||||||| |||||||||
Sbjct: 175 gtgaagtatctcgatttatcatcgtattatcaattac 211
Score = 34.2 bits (17), Expect(5) = 4e-52
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 731 ggaacattaccaaataa 747
|||||||||||||||||
Sbjct: 529 ggaacattaccaaataa 545
Score = 107 bits (54), Expect(4) = 2e-50
Identities = 75/82 (91%)
Strand = Plus / Plus
Query: 541 ggaacattaccaaataaggtgaagtatctcgttttatcatcgtataatcaattactcaca 600
||||||||||||||||| ||||||| | ||| ||||||||| ||| || |||||||||||
Sbjct: 719 ggaacattaccaaataatgtgaagtgtgtcgatttatcatcatatgataaattactcaca 778
Query: 601 cctggaacattaccaaataatg 622
||||||||||||||||||||||
Sbjct: 779 cctggaacattaccaaataatg 800
Score = 67.9 bits (34), Expect(4) = 2e-50
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 276 tcaattactcacactaggaacattgccaaaatatgtgatgtctctcgatttatcatcata 335
|||||||||||||| |||||||| ||||| |||||| || | ||||||||||||||||
Sbjct: 576 tcaattactcacacctggaacattaccaaataatgtgaagtatgtcgatttatcatcata 635
Query: 336 taatcaactattcacacc 353
|||| || || |||||||
Sbjct: 636 taataaattactcacacc 653
Score = 58.0 bits (29), Expect(4) = 2e-50
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 187 gtgaagtatctcgatttatcatcgtattatcaattac 223
||||||||||||| ||||||||||||| |||||||||
Sbjct: 547 gtgaagtatctcgttttatcatcgtataatcaattac 583
Score = 56.0 bits (28), Expect(4) = 2e-50
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 633 cgatttatcatcatataataaattactc 660
||||||||||||||||||||||||||||
Sbjct: 813 cgatttatcatcatataataaattactc 840
Score = 61.9 bits (31), Expect(6) = 5e-30
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 888 ctcggtttatcatcgtataatcaattactcncncctggaatattgccaa 936
|||| ||||||||||||||||||||||||| | ||||||| ||| ||||
Sbjct: 556 ctcgttttatcatcgtataatcaattactcacacctggaacattaccaa 604
Score = 48.1 bits (24), Expect(6) = 5e-30
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 619 aatgtgaagtatgtcgatttatcatcatataataaattac 658
|||||||||||| ||||||||||||| ||| || ||||||
Sbjct: 172 aatgtgaagtatctcgatttatcatcgtattatcaattac 211
Score = 44.1 bits (22), Expect(6) = 5e-30
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 825 tcgatttatcatcatataataaattactcacacc 858
|||||||||||||||||||| || || |||||||
Sbjct: 368 tcgatttatcatcatataatcaactattcacacc 401
Score = 40.1 bits (20), Expect(6) = 5e-30
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 760 tcgatttatcatcatatgataaattactcacacctggaacattaccaa 807
||||||||||||||||| || || || ||||||| |||| ||| ||||
Sbjct: 308 tcgatttatcatcatataatcaactattcacaccaggaagattgccaa 355
Score = 38.2 bits (19), Expect(6) = 5e-30
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1016 cgatttatcatcatataat 1034
|||||||||||||||||||
Sbjct: 621 cgatttatcatcatataat 639
Score = 30.2 bits (15), Expect(6) = 5e-30
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 709 tatgatcaattactcacac 727
|||| ||||||||||||||
Sbjct: 259 tatggtcaattactcacac 277
Score = 67.9 bits (34), Expect(5) = 6e-24
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 829 tttatcatcatataataaattactcacacctagaacattacccaataatg 878
||||||||| |||||| |||||||||||||| |||||||||| |||||||
Sbjct: 561 tttatcatcgtataatcaattactcacacctggaacattaccaaataatg 610
Score = 46.1 bits (23), Expect(5) = 6e-24
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 789 acacctggaacattaccaaataa 811
|||||||||||||||||||||||
Sbjct: 523 acacctggaacattaccaaataa 545
Score = 44.1 bits (22), Expect(5) = 6e-24
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 632 tcgatttatcatcatataataaattactcacacc 665
|||||||||||||||||||| || || |||||||
Sbjct: 368 tcgatttatcatcatataatcaactattcacacc 401
Score = 36.2 bits (18), Expect(5) = 6e-24
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 470 tcacaccaggaacattgccaaa 491
|||||| |||||||||||||||
Sbjct: 272 tcacactaggaacattgccaaa 293
Score = 26.3 bits (13), Expect(5) = 6e-24
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 960 tcatcatataatcaatt 976
|||||||||||| ||||
Sbjct: 628 tcatcatataataaatt 644
Score = 58.0 bits (29), Expect(4) = 1e-19
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 685 gtgaagtatctcgttttatcatcgtatgatcaattac 721
||||||||||||| ||||||||||||| |||||||||
Sbjct: 175 gtgaagtatctcgatttatcatcgtattatcaattac 211
Score = 44.1 bits (22), Expect(4) = 1e-19
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 825 tcgatttatcatcatataataaattactcacacc 858
|||||||||||||||||||| || || |||||||
Sbjct: 308 tcgatttatcatcatataatcaactattcacacc 341
Score = 44.1 bits (22), Expect(4) = 1e-19
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1016 cgatttatcatcatataatcaa 1037
||||||||||||||||||||||
Sbjct: 369 cgatttatcatcatataatcaa 390
Score = 38.2 bits (19), Expect(4) = 1e-19
Identities = 34/39 (87%)
Strand = Plus / Plus
Query: 770 atcatatgataaattactcacacctggaacattaccaaa 808
|||||||| | |||||||||||| |||||||| |||||
Sbjct: 255 atcatatggtcaattactcacactaggaacattgccaaa 293
Score = 48.1 bits (24), Expect(4) = 5e-14
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 184 aatgtgaagtatctcgatttatcatcgtattatcaattac 223
|||||||||||| ||||||||||||| ||| || ||||||
Sbjct: 607 aatgtgaagtatgtcgatttatcatcatataataaattac 646
Score = 48.1 bits (24), Expect(4) = 5e-14
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 292 ggaacattgccaaaatatgtgatgtctctcgatttatcatcatataatcaactattcaca 351
|||||||| ||||| |||||| || | ||||||||||||||||| || || || |||||
Sbjct: 719 ggaacattaccaaataatgtgaagtgtgtcgatttatcatcatatgataaattactcaca 778
Query: 352 ccaggaagattgccaa 367
|| |||| ||| ||||
Sbjct: 779 cctggaacattaccaa 794
Score = 38.2 bits (19), Expect(4) = 5e-14
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 381 cgatttatcatcatataat 399
|||||||||||||||||||
Sbjct: 813 cgatttatcatcatataat 831
Score = 30.2 bits (15), Expect(4) = 5e-14
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 271 tatggtcaattactcacac 289
|||| ||||||||||||||
Sbjct: 697 tatgatcaattactcacac 715
Score = 46.1 bits (23), Expect(4) = 7e-13
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 535 acacctggaacattaccaaataa 557
|||||||||||||||||||||||
Sbjct: 776 acacctggaacattaccaaataa 798
Score = 44.1 bits (22), Expect(4) = 7e-13
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 380 tcgatttatcatcatataatcaactattcacacc 413
|||||||||||||||||||| || || |||||||
Sbjct: 620 tcgatttatcatcatataataaattactcacacc 653
Score = 36.2 bits (18), Expect(4) = 7e-13
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 284 tcacactaggaacattgccaaa 305
|||||| |||||||||||||||
Sbjct: 458 tcacaccaggaacattgccaaa 479
Score = 34.2 bits (17), Expect(4) = 7e-13
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 195 tctcgatttatcatcgtattatcaa 219
||||||||||||||| ||| |||||
Sbjct: 366 tctcgatttatcatcatataatcaa 390
Score = 58.0 bits (29), Expect(3) = 1e-11
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 187 gtgaagtatctcgatttatcatcgtattatcaattac 223
||||||||||||| ||||||||||||| |||||||||
Sbjct: 673 gtgaagtatctcgttttatcatcgtatgatcaattac 709
Score = 38.2 bits (19), Expect(3) = 1e-11
Identities = 34/39 (87%)
Strand = Plus / Plus
Query: 267 atcatatggtcaattactcacactaggaacattgccaaa 305
|||||||| | |||||||||||| |||||||| |||||
Sbjct: 757 atcatatgataaattactcacacctggaacattaccaaa 795
Score = 38.2 bits (19), Expect(3) = 1e-11
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 321 cgatttatcatcatataat 339
|||||||||||||||||||
Sbjct: 813 cgatttatcatcatataat 831
Score = 40.1 bits (20), Expect(3) = 2e-06
Identities = 62/76 (81%)
Strand = Plus / Plus
Query: 653 aattactcacacctgaaacattaccaaataaggtgaagtatctcgttttatcatcgtatg 712
|||||||||||| | |||||| ||||| | |||| || ||||| ||||||||| |||
Sbjct: 266 aattactcacactaggaacattgccaaaatatgtgatgtctctcgatttatcatcatata 325
Query: 713 atcaattactcacacc 728
||||| || |||||||
Sbjct: 326 atcaactattcacacc 341
Score = 38.2 bits (19), Expect(3) = 2e-06
Identities = 34/39 (87%)
Strand = Plus / Plus
Query: 760 tcgatttatcatcatatgataaattactcacacctggaa 798
||||||||||||||||| || || || ||||||| ||||
Sbjct: 368 tcgatttatcatcatataatcaactattcacaccaggaa 406
Score = 38.2 bits (19), Expect(3) = 2e-06
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 829 tttatcatcatataataaattactcacacct 859
||||||||| ||| || ||||||||||||||
Sbjct: 687 tttatcatcgtatgatcaattactcacacct 717
Score = 40.1 bits (20), Expect(2) = 3e-04
Identities = 62/76 (81%)
Strand = Plus / Plus
Query: 278 aattactcacactaggaacattgccaaaatatgtgatgtctctcgatttatcatcatata 337
|||||||||||| | |||||| ||||| | |||| || ||||| ||||||||| |||
Sbjct: 641 aattactcacacctgaaacattaccaaataaggtgaagtatctcgttttatcatcgtatg 700
Query: 338 atcaactattcacacc 353
||||| || |||||||
Sbjct: 701 atcaattactcacacc 716
Score = 38.2 bits (19), Expect(2) = 3e-04
Identities = 34/39 (87%)
Strand = Plus / Plus
Query: 380 tcgatttatcatcatataatcaactattcacaccaggaa 418
||||||||||||||||| || || || ||||||| ||||
Sbjct: 747 tcgatttatcatcatatgataaattactcacacctggaa 785
Score = 44.1 bits (22), Expect(2) = 9e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1016 cgatttatcatcatataatcaa 1037
||||||||||||||||||||||
Sbjct: 309 cgatttatcatcatataatcaa 330
Score = 40.1 bits (20), Expect(2) = 9e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 888 ctcggtttatcatcgtataatcaattac 915
|||| ||||||||||||| |||||||||
Sbjct: 184 ctcgatttatcatcgtattatcaattac 211
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 2,309,590,642
Number of extensions: 143436567
Number of successful extensions: 11303267
Number of sequences better than 10.0: 140
Length of query: 2060
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 2036
Effective length of database: 97,308,875,965
Effective search space: 198120871464740
Effective search space used: 198120871464740
X1: 11 (21.8 bits)
S2: 23 (46.1 bits)
|
| protein update |
2009. 6.29 |
| Homology vs Protein |
Query= Contig-U11300-1 (Contig-U11300-1Q) /CSM_Contig/Contig-U11300-1Q.Seq.d
(2060 letters)
Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC115598_30(AC115598|pid:none) Dictyostelium discoideum chromoso... 463 e-155
AC115684_4(AC115684|pid:none) Dictyostelium discoideum chromosom... 132 7e-41
(Q54FS2) RecName: Full=FNIP repeat-containing protein DDB_G02906... 91 2e-16
AC115604_12(AC115604|pid:none) Dictyostelium discoideum chromoso... 75 1e-11
AC116960_62(AC116960|pid:none) Dictyostelium discoideum chromoso... 74 2e-11
AC114265_1(AC114265|pid:none) Dictyostelium discoideum chromosom... 72 1e-10
AC116982_8(AC116982|pid:none) Dictyostelium discoideum chromosom... 70 3e-10
(Q54FS1) RecName: Full=FNIP repeat-containing protein DDB_G02906... 69 9e-10
AC116987_15(AC116987|pid:none) Dictyostelium discoideum chromoso... 66 4e-09
AC116957_83(AC116957|pid:none) Dictyostelium discoideum chromoso... 65 9e-09
(Q5UPD4) RecName: Full=Putative F-box and FNIP repeat-containing... 65 9e-09
AC116984_119(AC116984|pid:none) Dictyostelium discoideum chromos... 65 1e-08
(Q94481) RecName: Full=FNIP repeat-containing protein cigB; 64 2e-08
U66528_1(U66528|pid:none) Dictyostelium discoideum CigB (cigB) m... 64 2e-08
(Q8T126) RecName: Full=Probable inactive serine/threonine-protei... 64 2e-08
AC116977_30(AC116977|pid:none) Dictyostelium discoideum chromoso... 63 5e-08
CP001138_776(CP001138|pid:none) Salmonella enterica subsp. enter... 62 8e-08
AE009952_3351(AE009952|pid:none) Yersinia pestis KIM, complete g... 62 1e-07
(Q1ZXK1) RecName: Full=FNIP repeat-containing protein DDB_G02773... 61 1e-07
AC117076_9(AC117076|pid:none) Dictyostelium discoideum chromosom... 60 3e-07
CP001120_858(CP001120|pid:none) Salmonella enterica subsp. enter... 60 3e-07
AE006468_773(AE006468|pid:none) Salmonella enterica subsp. enter... 60 3e-07
CP001113_807(CP001113|pid:none) Salmonella enterica subsp. enter... 60 3e-07
CP001127_883(CP001127|pid:none) Salmonella enterica subsp. enter... 60 4e-07
(Q5UQL2) RecName: Full=Putative F-box and FNIP repeat-containing... 59 9e-07
CP000950_731(CP000950|pid:none) Yersinia pseudotuberculosis YPII... 58 1e-06
BX936398_3300(BX936398|pid:none) Yersinia pseudotuberculosis IP3... 57 3e-06
AC117176_63(AC117176|pid:none) Dictyostelium discoideum chromoso... 56 6e-06
(Q54JC0) RecName: Full=Calmodulin-binding protein CmbB; AltName:... 56 6e-06
CP000950_733(CP000950|pid:none) Yersinia pseudotuberculosis YPII... 55 1e-05
AC116957_13(AC116957|pid:none) Dictyostelium discoideum chromoso... 55 1e-05
AC116305_136(AC116305|pid:none) Dictyostelium discoideum chromos... 54 2e-05
AC116984_17(AC116984|pid:none) Dictyostelium discoideum chromoso... 53 5e-05
AC116957_4(AC116957|pid:none) Dictyostelium discoideum chromosom... 52 6e-05
AC116986_27(AC116986|pid:none) Dictyostelium discoideum chromoso... 52 6e-05
AC115612_2(AC115612|pid:none) Dictyostelium discoideum chromosom... 50 3e-04
CP000720_664(CP000720|pid:none) Yersinia pseudotuberculosis IP 3... 50 4e-04
CP000950_732(CP000950|pid:none) Yersinia pseudotuberculosis YPII... 49 5e-04
BA000040_1904(BA000040|pid:none) Bradyrhizobium japonicum USDA 1... 49 5e-04
AF322013_3(AF322013|pid:none) Bradyrhizobium japonicum symbiotic... 49 5e-04
AY206436_1(AY206436|pid:none) Shigella flexneri plasmid pINV_F6_... 49 5e-04
CP000035_37(CP000035|pid:none) Shigella dysenteriae Sd197 plasmi... 49 5e-04
A35149(A35149) ipaH protein - Shigella flexneri &M32063_1(M3206... 49 5e-04
AC116960_34(AC116960|pid:none) Dictyostelium discoideum chromoso... 49 0.001
AE009952_3354(AE009952|pid:none) Yersinia pestis KIM, complete g... 49 0.001
CP000305_3219(CP000305|pid:none) Yersinia pestis Nepal516, compl... 49 0.001
AY150843_7(AY150843|pid:none) Yersinia enterocolitica strain A12... 48 0.001
AE006468_2514(AE006468|pid:none) Salmonella enterica subsp. ente... 47 0.002
AC116305_99(AC116305|pid:none) Dictyostelium discoideum chromoso... 47 0.003
(Q86AH2) RecName: Full=FNIP repeat-containing protein DDB_G02719... 46 0.005
AB445678_1(AB445678|pid:none) Macaca fascicularis TLR9 mRNA for ... 46 0.006
EU204946_1(EU204946|pid:none) Cercocebus torquatus atys Toll-lik... 46 0.006
AB445674_1(AB445674|pid:none) Pan troglodytes TLR9 mRNA for toll... 45 0.010
FJ946863_1(FJ946863|pid:none) Homo sapiens isolate DAI-HIES TLR9... 45 0.010
AB445677_1(AB445677|pid:none) Pongo pygmaeus TLR9 mRNA for toll-... 45 0.010
(Q9NR96) RecName: Full=Toll-like receptor 9; AltName: CD_antigen... 45 0.010
AC115680_16(AC115680|pid:none) Dictyostelium discoideum chromoso... 45 0.010
AX206974_1(AX206974|pid:none) Sequence 1 from Patent WO0155386. ... 45 0.010
AK303285_1(AK303285|pid:none) Homo sapiens cDNA FLJ56277 complet... 45 0.010
AF245704_1(AF245704|pid:none) Homo sapiens toll-like receptor 9 ... 45 0.010
AC117075_45(AC117075|pid:none) Dictyostelium discoideum chromoso... 45 0.010
AB445676_1(AB445676|pid:none) Gorilla gorilla TLR9 mRNA for toll... 45 0.010
AF246972_1(AF246972|pid:none) Homo sapiens toll-like receptor 9 ... 45 0.010
AC116032_2(AC116032|pid:none) Dictyostelium discoideum chromosom... 45 0.010
AF259263_1(AF259263|pid:none) Homo sapiens toll-like receptor 9 ... 45 0.010
AE017220_2579(AE017220|pid:none) Salmonella enterica subsp. ente... 45 0.013
CP000857_1036(CP000857|pid:none) Salmonella enterica subsp. ente... 45 0.013
(Q554M9) RecName: Full=FNIP repeat-containing protein DDB_G02746... 44 0.017
AC116956_26(AC116956|pid:none) Dictyostelium discoideum chromoso... 44 0.017
AY359085_1(AY359085|pid:none) Homo sapiens clone DNA119714 TLR9 ... 44 0.017
(Q5UPW6) RecName: Full=Putative FNIP repeat-containing protein L... 44 0.023
EU642459_1(EU642459|pid:none) Knorringia sibirica polygalacturon... 44 0.023
BX936398_3299(BX936398|pid:none) Yersinia pseudotuberculosis IP3... 44 0.029
CP001048_3394(CP001048|pid:none) Yersinia pseudotuberculosis PB1... 44 0.029
AF030691_2(AF030691|pid:none) Plasmodium falciparum strain 7G8 C... 44 0.029
(Q5UP38) RecName: Full=Putative FNIP repeat-containing protein L... 44 0.029
AY649790_1(AY649790|pid:none) Mus musculus strain BALB/c toll-li... 43 0.038
AB045181_1(AB045181|pid:none) Mus musculus Tlr9 mRNA for toll-li... 43 0.038
BC172644_1(BC172644|pid:none) Synthetic construct Mus musculus c... 43 0.038
AF314224_1(AF314224|pid:none) Mus musculus toll-like receptor 9 ... 43 0.038
AY649791_1(AY649791|pid:none) Mus musculus strain C57BL/6 toll-l... 43 0.038
AC114258_18(AC114258|pid:none) Dictyostelium discoideum chromoso... 43 0.038
(Q9EQU3) RecName: Full=Toll-like receptor 9; AltName: CD_antigen... 43 0.038
AF030694_10(AF030694|pid:none) Plasmodium falciparum strain Dd2 ... 42 0.086
AE009952_1435(AE009952|pid:none) Yersinia pestis KIM, complete g... 42 0.086
AM486412_3(AM486412|pid:none) Vitis vinifera contig VV78X056817.... 42 0.11
AK117901_1(AK117901|pid:none) Arabidopsis thaliana At5g49660 mRN... 41 0.15
AL844506_94(AL844506|pid:none) Plasmodium falciparum 3D7 chromos... 41 0.15
AC116984_124(AC116984|pid:none) Dictyostelium discoideum chromos... 41 0.19
AC117081_26(AC117081|pid:none) Dictyostelium discoideum chromoso... 41 0.19
AL611936_15(AL611936|pid:none) Mouse DNA sequence from clone RP2... 41 0.19
(Q556H2) RecName: Full=FNIP repeat-containing protein DDB_G02740... 41 0.19
AL844509_369(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 41 0.19
AY358294_1(AY358294|pid:none) Homo sapiens clone DNA40982 EGEE29... 40 0.25
AF260819_1(AF260819|pid:none) Plasmodium falciparum CG1 protein ... 40 0.25
(Q7Z5L7) RecName: Full=Podocan; Flags: Precursor; 40 0.25
BC030608_1(BC030608|pid:none) Homo sapiens podocan, mRNA (cDNA c... 40 0.25
AL445183_4(AL445183|pid:none) Human DNA sequence from clone RP11... 40 0.25
AC117267_6(AC117267|pid:none) Dictyostelium discoideum chromosom... 40 0.25
CP001063_1450(CP001063|pid:none) Shigella boydii CDC 3083-94, co... 40 0.33
(P08678) RecName: Full=Adenylate cyclase; EC=4.6.1.1; A... 40 0.33
CP000266_1739(CP000266|pid:none) Shigella flexneri 5 str. 8401, ... 40 0.33
(Q5UR85) RecName: Full=Putative FNIP repeat-containing protein R... 40 0.33
CP000036_1497(CP000036|pid:none) Shigella boydii Sb227, complete... 40 0.33
EU743831_1(EU743831|pid:none) Shigella boydii invasion plasmid a... 40 0.43
CP000034_1862(CP000034|pid:none) Shigella dysenteriae Sd197, com... 40 0.43
CP000036_881(CP000036|pid:none) Shigella boydii Sb227, complete ... 40 0.43
CP001063_861(CP001063|pid:none) Shigella boydii CDC 3083-94, com... 40 0.43
CP000266_1871(CP000266|pid:none) Shigella flexneri 5 str. 8401, ... 39 0.56
AM398681_170(AM398681|pid:none) Flavobacterium psychrophilum JIP... 39 0.56
AE014073_1709(AE014073|pid:none) Shigella flexneri 2a str. 2457T... 39 0.56
CP001076_205(CP001076|pid:none) Rhizobium etli CIAT 652 plasmid ... 39 0.73
CR628337_2333(CR628337|pid:none) Legionella pneumophila str. Len... 39 0.73
AE017354_2353(AE017354|pid:none) Legionella pneumophila subsp. p... 39 0.95
AE014188_445(AE014188|pid:none) Plasmodium falciparum 3D7 chromo... 38 1.2
CP000383_2870(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334... 38 1.6
AF386526_224(AF386526|pid:none) Shigella flexneri 2a str. 301 vi... 37 2.1
CP000039_167(CP000039|pid:none) Shigella sonnei Ss046 plasmid pS... 37 2.1
AF047365_1(AF047365|pid:none) Shigella flexneri plasmid pWR100 I... 37 2.1
AY206445_1(AY206445|pid:none) Shigella flexneri plasmid pINV_F6_... 37 2.1
U59751_1(U59751|pid:none) Cassava vein mosaic virus, complete ge... 37 2.8
AM412317_273(AM412317|pid:none) Clostridium botulinum A str. ATC... 37 2.8
AC116957_6(AC116957|pid:none) Dictyostelium discoideum chromosom... 37 2.8
FM162234_46(FM162234|pid:none) Bradyrhizobium elkanii type III s... 37 2.8
CP000745_1662(CP000745|pid:none) Methanococcus maripaludis C7, c... 37 3.6
CP000266_694(CP000266|pid:none) Shigella flexneri 5 str. 8401, c... 36 4.7
CP000037_112(CP000037|pid:none) Shigella boydii Sb227 plasmid pS... 36 4.7
S14181(S14181)DNA-directed RNA polymerase (EC 2.7.7.6) largest c... 36 4.7
CP000038_2472(CP000038|pid:none) Shigella sonnei Ss046, complete... 36 4.7
T07796(T07796) DNA-directed RNA polymerase (EC 2.7.7.6) largest ... 36 4.7
CP000241_968(CP000241|pid:none) Helicobacter pylori HPAG1, compl... 36 4.7
AE005674_2610(AE005674|pid:none) Shigella flexneri 2a str. 301, ... 36 4.7
CP000036_597(CP000036|pid:none) Shigella boydii Sb227, complete ... 36 4.7
AE005674_722(AE005674|pid:none) Shigella flexneri 2a str. 301, c... 35 8.0
CP000034_777(CP000034|pid:none) Shigella dysenteriae Sd197, comp... 35 8.0
EU743832_1(EU743832|pid:none) Shigella boydii invasion plasmid a... 35 8.0
AK243503_1(AK243503|pid:none) Oryza sativa Japonica Group cDNA, ... 35 8.0
>AC115598_30(AC115598|pid:none) Dictyostelium discoideum chromosome 2
map 581427-735498 strain AX4, complete sequence.
Length = 1169
Score = 463 bits (1192), Expect(3) = e-155
Identities = 230/249 (92%), Positives = 231/249 (92%)
Frame = +3
Query: 1128 QAYNQPIDSIFIFNGVEYLILQSFNHPLGPGILPESIKYLKLPSFNHPLKEGSIPRSVIH 1307
QAYNQPIDSIFIFNGVEYLILQSFNHPLGPGILPESIKYLKLPSFNHPLKEGSIPRSVIH
Sbjct: 551 QAYNQPIDSIFIFNGVEYLILQSFNHPLGPGILPESIKYLKLPSFNHPLKEGSIPRSVIH 610
Query: 1308 LVFNKFNQFSLDEINLILPKFLDFGDAFDIEKYGILIPEDSILTLRTGFTFNQPINQRYI 1487
LVFNKFNQFSLDEINLILPKFLDFGDAFDIEKYGILIPEDSILTLRTGFTFNQPINQRYI
Sbjct: 611 LVFNKFNQFSLDEINLILPKFLDFGDAFDIEKYGILIPEDSILTLRTGFTFNQPINQRYI 670
Query: 1488 PSSVTDLQLYNYNLKILPHSIPRSIIMLTLGSNFTHFEXXXXXXXXXXXXTFGFKNNFKI 1667
PSSVTDLQLYNYNLKILPHSIPRSIIMLTLGSNFTHFE TFGFKNNFKI
Sbjct: 671 PSSVTDLQLYNYNLKILPHSIPRSIIMLTLGSNFTHFESLSNLPSSIINLTFGFKNNFKI 730
Query: 1668 AELKKYIPSHITSININGKIVNFKKSSPLNTFNQSTDNILNNNEHFKEDWEIISTLGSGN 1847
AELKKYIPSHITSININGKIVNFKKSSPLNTFNQSTDNILNNNEHFKEDWEIISTLGSGN
Sbjct: 731 AELKKYIPSHITSININGKIVNFKKSSPLNTFNQSTDNILNNNEHFKEDWEIISTLGSGN 790
Query: 1848 LEKYLRQEK 1874
K + K
Sbjct: 791 FGKVFKARK 799
Score = 75.9 bits (185), Expect(3) = e-155
Identities = 38/54 (70%), Positives = 39/54 (72%)
Frame = +1
Query: 1867 KKNQGIINGSKVSLCAXXXXXXXXXXXXXLSTEVEILNKLKDNEHSMKYYGYGY 2028
+K GIINGSKVSLCA LSTEVEILNKLKDNEHSMKYYGYGY
Sbjct: 798 RKINGIINGSKVSLCAIKKIEKKDKLKIKLSTEVEILNKLKDNEHSMKYYGYGY 851
Score = 58.2 bits (139), Expect(3) = e-155
Identities = 26/26 (100%), Positives = 26/26 (100%)
Frame = +2
Query: 1049 NQCTNLPLFNEVIVPSGFFGIKYLEL 1126
NQCTNLPLFNEVIVPSGFFGIKYLEL
Sbjct: 525 NQCTNLPLFNEVIVPSGFFGIKYLEL 550
Score = 285 bits (729), Expect(2) = 7e-96
Identities = 140/142 (98%), Positives = 141/142 (99%)
Frame = +1
Query: 313 MSLDLSSYNQLFTPGRLPIRVSLDLSSYNQLFTPGRLPDTVDYLKLSSYNQLFTPGTLPN 492
MSLDLSSYNQLFTPGRLPIRVSLDLSSYNQLFTPGRLPDTVDYLKLSSYNQLFTPGTLPN
Sbjct: 1 MSLDLSSYNQLFTPGRLPIRVSLDLSSYNQLFTPGRLPDTVDYLKLSSYNQLFTPGTLPN 60
Query: 493 HMVYLNLSSYNQPLTPGTLPNKVKYLVLSSYNQLLTPGTLPNNVKYVDLSSYNKLLTPET 672
HMVYLNLSSYNQPLTPGTLPNKVKYLVLSSYNQLLTPGTLPNNVKYVDLSSYNKLLTPET
Sbjct: 61 HMVYLNLSSYNQPLTPGTLPNKVKYLVLSSYNQLLTPGTLPNNVKYVDLSSYNKLLTPET 120
Query: 673 LPNKVKYLVLSSYDQLLTPGNI 738
LPNKVKYLVLSSYDQLLTPG +
Sbjct: 121 LPNKVKYLVLSSYDQLLTPGTL 142
Score = 91.7 bits (226), Expect(2) = 7e-96
Identities = 56/106 (52%), Positives = 64/106 (60%), Gaps = 3/106 (2%)
Frame = +3
Query: 753 KCVDLSSYDKLLTPGTLPNNGEVWSIYHHIINYSHL---EHYPIMGEGLGLSSYNQLLXP 923
KCVDLSSYDKLLTPGTLPNN + Y + +Y+ L P E L LSSYNQLL P
Sbjct: 147 KCVDLSSYDKLLTPGTLPNNVK----YVDLSSYNKLLTPRTLPNNVECLVLSSYNQLLTP 202
Query: 924 GILPXMGRISDXSSYNQFPXPGKLAKMGKNXDLSSYNQXXXXINVP 1061
GILP + D SSYNQ PG L+ + DLSSYNQ +P
Sbjct: 203 GILPNYVKYLDISSYNQLLTPGTLSNNVEYLDLSSYNQVLAPKTIP 248
Score = 216 bits (551), Expect = 2e-54
Identities = 120/187 (64%), Positives = 140/187 (74%), Gaps = 2/187 (1%)
Frame = +1
Query: 187 VKYLDLSSYYQLHAPRRFRKIVEYLNLS-YGQLLTLGTLPKYVMSLDLSSYNQLFTPGRL 363
V YL LSSY QL P + YLNLS Y Q LT GTLP V L LSSYNQL TPG L
Sbjct: 41 VDYLKLSSYNQLFTPGTLPNHMVYLNLSSYNQPLTPGTLPNKVKYLVLSSYNQLLTPGTL 100
Query: 364 PIRVS-LDLSSYNQLFTPGRLPDTVDYLKLSSYNQLFTPGTLPNHMVYLNLSSYNQPLTP 540
P V +DLSSYN+L TP LP+ V YL LSSY+QL TPGTLPN++ ++LSSY++ LTP
Sbjct: 101 PNNVKYVDLSSYNKLLTPETLPNKVKYLVLSSYDQLLTPGTLPNNVKCVDLSSYDKLLTP 160
Query: 541 GTLPNKVKYLVLSSYNQLLTPGTLPNNVKYVDLSSYNKLLTPETLPNKVKYLVLSSYDQL 720
GTLPN VKY+ LSSYN+LLTP TLPNNV+ + LSSYN+LLTP LPN VKYL +SSY+QL
Sbjct: 161 GTLPNNVKYVDLSSYNKLLTPRTLPNNVECLVLSSYNQLLTPGILPNYVKYLDISSYNQL 220
Query: 721 LTPGNIT 741
LTPG ++
Sbjct: 221 LTPGTLS 227
Score = 209 bits (532), Expect = 3e-52
Identities = 116/184 (63%), Positives = 138/184 (75%), Gaps = 2/184 (1%)
Frame = +1
Query: 193 YLDLSSYYQLHAPRRFRKIVEYLNLS-YGQLLTLGTLPKYVMSLDLSSYNQLFTPGRLPI 369
YL+LSSY Q P V+YL LS Y QLLT GTLP V +DLSSYN+L TP LP
Sbjct: 64 YLNLSSYNQPLTPGTLPNKVKYLVLSSYNQLLTPGTLPNNVKYVDLSSYNKLLTPETLPN 123
Query: 370 RVS-LDLSSYNQLFTPGRLPDTVDYLKLSSYNQLFTPGTLPNHMVYLNLSSYNQPLTPGT 546
+V L LSSY+QL TPG LP+ V + LSSY++L TPGTLPN++ Y++LSSYN+ LTP T
Sbjct: 124 KVKYLVLSSYDQLLTPGTLPNNVKCVDLSSYDKLLTPGTLPNNVKYVDLSSYNKLLTPRT 183
Query: 547 LPNKVKYLVLSSYNQLLTPGTLPNNVKYVDLSSYNKLLTPETLPNKVKYLVLSSYDQLLT 726
LPN V+ LVLSSYNQLLTPG LPN VKY+D+SSYN+LLTP TL N V+YL LSSY+Q+L
Sbjct: 184 LPNNVECLVLSSYNQLLTPGILPNYVKYLDISSYNQLLTPGTLSNNVEYLDLSSYNQVLA 243
Query: 727 PGNI 738
P I
Sbjct: 244 PKTI 247
Score = 206 bits (523), Expect = 3e-51
Identities = 120/217 (55%), Positives = 143/217 (65%), Gaps = 8/217 (3%)
Frame = +1
Query: 148 YLDFSFYQVSL------KNVKYLDLSSYYQLHAPRRFRKIVEYLNLS-YGQLLTLGTLPK 306
YL+ S Y L VKYL LSSY QL P V+Y++LS Y +LLT TLP
Sbjct: 64 YLNLSSYNQPLTPGTLPNKVKYLVLSSYNQLLTPGTLPNNVKYVDLSSYNKLLTPETLPN 123
Query: 307 YVMSLDLSSYNQLFTPGRLPIRVS-LDLSSYNQLFTPGRLPDTVDYLKLSSYNQLFTPGT 483
V L LSSY+QL TPG LP V +DLSSY++L TPG LP+ V Y+ LSSYN+L TP T
Sbjct: 124 KVKYLVLSSYDQLLTPGTLPNNVKCVDLSSYDKLLTPGTLPNNVKYVDLSSYNKLLTPRT 183
Query: 484 LPNHMVYLNLSSYNQPLTPGTLPNKVKYLVLSSYNQLLTPGTLPNNVKYVDLSSYNKLLT 663
LPN++ L LSSYNQ LTPG LPN VKYL +SSYNQLLTPGTL NNV+Y+DLSSYN++L
Sbjct: 184 LPNNVECLVLSSYNQLLTPGILPNYVKYLDISSYNQLLTPGTLSNNVEYLDLSSYNQVLA 243
Query: 664 PETLPNKVKYLVLSSYDQLLTPGNITK*CGSVSIYHH 774
P+T+PN VK L SY Q L G + + H
Sbjct: 244 PKTIPNNVKCLDCPSYKQSLISETFPNRVGDLELSDH 280
Score = 154 bits (389), Expect = 1e-35
Identities = 101/219 (46%), Positives = 122/219 (55%), Gaps = 32/219 (14%)
Frame = +1
Query: 184 NVKYLDLSSYYQLHAPRRFRKIVEYLNLS-YGQLLTLGTLPKYVMSLDLSSYNQLFTPGR 360
NVKY+DLSSY +L P V+YL LS Y QLLT GTLP V +DLSSY++L TPG
Sbjct: 103 NVKYVDLSSYNKLLTPETLPNKVKYLVLSSYDQLLTPGTLPNNVKCVDLSSYDKLLTPGT 162
Query: 361 LPIRVS----------------------LDLSSYNQLFTPGRLPDTVDYLKLSSYNQLFT 474
LP V L LSSYNQL TPG LP+ V YL +SSYNQL T
Sbjct: 163 LPNNVKYVDLSSYNKLLTPRTLPNNVECLVLSSYNQLLTPGILPNYVKYLDISSYNQLLT 222
Query: 475 PGTLPNHMVYLNLSSYNQPLTPGTLPNKVKYLVLSSYNQLLTPGTLPNNVKYVDLSSYNK 654
PGTL N++ YL+LSSYNQ L P T+PN VK L SY Q L T PN V ++LS + K
Sbjct: 223 PGTLSNNVEYLDLSSYNQVLAPKTIPNNVKCLDCPSYKQSLISETFPNRVGDLELSDHPK 282
Query: 655 -------LLTPE--TLPNKVKYLVLSSYDQLLTPGNITK 744
++ P+ NKV Y +++ NI K
Sbjct: 283 HVNDNWEIIKPQKNISENKVYYTTKHKNAKIIDVLNICK 321
Score = 135 bits (339), Expect = 7e-30
Identities = 77/178 (43%), Positives = 104/178 (58%), Gaps = 4/178 (2%)
Frame = +3
Query: 1200 NHPLGPGILPESIKYLKLPSFNHPLKEGSIPRSVIHLVFNKFNQFSLDEINLILPKFLDF 1379
N P+ G + I YL LP +N + G++P SV +L+FNK NQ+ + K+LD
Sbjct: 988 NEPILLGSIGNEINYLSLPIYNQMITPGALPPSVQYLLFNKLNQYLECDSIPESVKYLDL 1047
Query: 1380 GDAFDIEKYGILIPEDSILTLRTGFTFNQPINQRYIPSSVTDLQLYNYNLKILPHSIPRS 1559
G+ FDIEK GI + +SIL LR GF F QP++QR +P SVTDLQLYNYN+ + +SIP
Sbjct: 1048 GNEFDIEKNGINLSNESILVLRCGFNFTQPVSQRLLPYSVTDLQLYNYNINLKRNSIPTL 1107
Query: 1560 IIMLTLGSNFTHFEXXXXXXXXXXXXTFGFKNNFK--IAELKKYIPS--HITSINING 1721
+ LTLGSNFT+ E G K+ + E++K I + ITS ING
Sbjct: 1108 VTSLTLGSNFTNIESLSFLPENVNSLAIGIKDEDEKLTKEIEKIIQTKKSITSFKING 1165
Score = 110 bits (276), Expect = 2e-22
Identities = 105/358 (29%), Positives = 165/358 (46%), Gaps = 16/358 (4%)
Frame = +3
Query: 888 LGLSSYNQLLXPGILPXMGRIS-DXSSYNQFPXPGKLAKMGKNXDLSSYNQXXXXINVPI 1064
L LSSYNQL PG LP R+S D SSYNQ PG+L LSSYNQ +P
Sbjct: 3 LDLSSYNQLFTPGRLPI--RVSLDLSSYNQLFTPGRLPDTVDYLKLSSYNQLFTPGTLPN 60
Query: 1065 YHYSMR*LFHQVFLV*NI*NYQAYNQPIDSIFIFNGVEYLILQSFNHPLGPGILPESIKY 1244
H V+L N +YNQP+ + N V+YL+L S+N L PG LP ++KY
Sbjct: 61 ---------HMVYL-----NLSSYNQPLTPGTLPNKVKYLVLSSYNQLLTPGTLPNNVKY 106
Query: 1245 LKLPSFNHPLKEGSIPRSVIHLVFNKFNQFSLDEINLILPKFLDFG-DAFDIEKYGILIP 1421
+ L S+N L ++P V +LV + ++Q L+ P L D+ Y L+
Sbjct: 107 VDLSSYNKLLTPETLPNKVKYLVLSSYDQ-------LLTPGTLPNNVKCVDLSSYDKLLT 159
Query: 1422 EDSI---LTLRTGFTFNQPINQRYIPSSVTDLQLYNYNLKILPHSIPRSIIMLTLGSNFT 1592
++ + ++N+ + R +P++V L L +YN + P +P + L + S
Sbjct: 160 PGTLPNNVKYVDLSSYNKLLTPRTLPNNVECLVLSSYNQLLTPGILPNYVKYLDISS--- 216
Query: 1593 HFEXXXXXXXXXXXXTFG-FKNNFKIAELKKY--------IPSHITSININGKIVNFKKS 1745
T G NN + +L Y IP+++ ++ ++K+S
Sbjct: 217 ----------YNQLLTPGTLSNNVEYLDLSSYNQVLAPKTIPNNVKCLD----CPSYKQS 262
Query: 1746 SPLNTF-NQSTDNILNNN-EHFKEDWEIISTLGSGNLEKYLRQEKSRNHKWIKSIVVC 1913
TF N+ D L+++ +H ++WEII + + K K +N K I + +C
Sbjct: 263 LISETFPNRVGDLELSDHPKHVNDNWEIIKPQKNISENKVYYTTKHKNAKIIDVLNIC 320
Score = 105 bits (262), Expect = 6e-21
Identities = 87/282 (30%), Positives = 134/282 (47%), Gaps = 3/282 (1%)
Frame = +3
Query: 759 VDLSSYDKLLTPGTLPNNGEV--WSIYHHIINYSHLEHYPIMGEGLGLSSYNQLLXPGIL 932
+DLSSY++L TPG LP+ + S Y+ + L ++ + L LSSYNQ L PG L
Sbjct: 23 LDLSSYNQLFTPGRLPDTVDYLKLSSYNQLFTPGTLPNHMVY---LNLSSYNQPLTPGTL 79
Query: 933 PXMGRISDXSSYNQFPXPGKLAKMGKNXDLSSYNQXXXXINVPIYHYSMR*LFHQV-FLV 1109
P + SSYNQ PG L K DLSSYN+ +P ++V +LV
Sbjct: 80 PNKVKYLVLSSYNQLLTPGTLPNNVKYVDLSSYNKLLTPETLP----------NKVKYLV 129
Query: 1110 *NI*NYQAYNQPIDSIFIFNGVEYLILQSFNHPLGPGILPESIKYLKLPSFNHPLKEGSI 1289
+Y+Q + + N V+ + L S++ L PG LP ++KY+ L S+N L ++
Sbjct: 130 -----LSSYDQLLTPGTLPNNVKCVDLSSYDKLLTPGTLPNNVKYVDLSSYNKLLTPRTL 184
Query: 1290 PRSVIHLVFNKFNQFSLDEINLILPKFLDFGDAFDIEKYGILIPEDSILTLRTGFTFNQP 1469
P +V LV + +NQ I K+LD + G L L L ++NQ
Sbjct: 185 PNNVECLVLSSYNQLLTPGILPNYVKYLDISSYNQLLTPGTLSNNVEYLDLS---SYNQV 241
Query: 1470 INQRYIPSSVTDLQLYNYNLKILPHSIPRSIIMLTLGSNFTH 1595
+ + IP++V L +Y ++ + P + L L + H
Sbjct: 242 LAPKTIPNNVKCLDCPSYKQSLISETFPNRVGDLELSDHPKH 283
Score = 99.8 bits (247), Expect = 3e-19
Identities = 71/196 (36%), Positives = 96/196 (48%), Gaps = 3/196 (1%)
Frame = +3
Query: 753 KCVDLSSYDKLLTPGTLPNNGEVWSIYHHIINYSHL---EHYPIMGEGLGLSSYNQLLXP 923
K + LSSY++LLTPGTLPNN + Y + +Y+ L E P + L LSSY+QLL P
Sbjct: 84 KYLVLSSYNQLLTPGTLPNNVK----YVDLSSYNKLLTPETLPNKVKYLVLSSYDQLLTP 139
Query: 924 GILPXMGRISDXSSYNQFPXPGKLAKMGKNXDLSSYNQXXXXINVPIYHYSMR*LFHQVF 1103
G LP + D SSY++ PG L K DLSSYN+ +P
Sbjct: 140 GTLPNNVKCVDLSSYDKLLTPGTLPNNVKYVDLSSYNKLLTPRTLP-------------- 185
Query: 1104 LV*NI*NYQAYNQPIDSIFIFNGVEYLILQSFNHPLGPGILPESIKYLKLPSFNHPLKEG 1283
N VE L+L S+N L PGILP +KYL + S+N L G
Sbjct: 186 ---------------------NNVECLVLSSYNQLLTPGILPNYVKYLDISSYNQLLTPG 224
Query: 1284 SIPRSVIHLVFNKFNQ 1331
++ +V +L + +NQ
Sbjct: 225 TLSNNVEYLDLSSYNQ 240
Score = 65.5 bits (158), Expect = 7e-09
Identities = 55/196 (28%), Positives = 94/196 (47%), Gaps = 15/196 (7%)
Frame = +1
Query: 184 NVKYLDLSSYYQL--HAPRRFRKIVEY-LNLSYGQLLTLGTLPKYVMSLDLSSYNQLFTP 354
N+K LD++ + H F+ +++ L ++ L YV+ S + P
Sbjct: 464 NLKLLDINGIPLIPDHLSNLFKNTIQHCLQINPNARFNANELYNYVIK---DSIMEPIEP 520
Query: 355 GRLPIRVSLDLSSYNQLFTPGRLPDTVDYLKLSSYNQLFTPGTLPNHMVYLNLSSYNQPL 534
LP + + +L +N++ P + YL+L +YNQ + N + YL L S+N PL
Sbjct: 521 IYLPNQCT-NLPLFNEVIVPSGFFG-IKYLELQAYNQPIDSIFIFNGVEYLILQSFNHPL 578
Query: 535 TPGTLPNKVKYLVLSSYNQLLTPGTLPNNVKYVDLSSYNK-------LLTPETLP----- 678
PG LP +KYL L S+N L G++P +V ++ + +N+ L+ P+ L
Sbjct: 579 GPGILPESIKYLKLPSFNHPLKEGSIPRSVIHLVFNKFNQFSLDEINLILPKFLDFGDAF 638
Query: 679 NKVKYLVLSSYDQLLT 726
+ KY +L D +LT
Sbjct: 639 DIEKYGILIPEDSILT 654
Score = 58.9 bits (141), Expect = 7e-07
Identities = 48/182 (26%), Positives = 75/182 (41%), Gaps = 45/182 (24%)
Frame = +1
Query: 298 LPKYVMSLDLSSYNQLFTPGRLPIRVSLDLSSYNQLFTPGRLPDTVDYLKLSSYNQLFTP 477
LP +L L +N++ P L+L +YNQ + + V+YL L S+N P
Sbjct: 523 LPNQCTNLPL--FNEVIVPSGFFGIKYLELQAYNQPIDSIFIFNGVEYLILQSFNHPLGP 580
Query: 478 GTLPNHMVYLNLSSYNQPLTPGTLPNKVKYLVLSSYNQ---------------------- 591
G LP + YL L S+N PL G++P V +LV + +NQ
Sbjct: 581 GILPESIKYLKLPSFNHPLKEGSIPRSVIHLVFNKFNQFSLDEINLILPKFLDFGDAFDI 640
Query: 592 -----------LLTPGT------------LPNNVKYVDLSSYNKLLTPETLPNKVKYLVL 702
+LT T +P++V + L +YN + P ++P + L L
Sbjct: 641 EKYGILIPEDSILTLRTGFTFNQPINQRYIPSSVTDLQLYNYNLKILPHSIPRSIIMLTL 700
Query: 703 SS 708
S
Sbjct: 701 GS 702
Score = 58.2 bits (139), Expect = 1e-06
Identities = 25/62 (40%), Positives = 42/62 (67%)
Frame = +1
Query: 523 NQPLTPGTLPNKVKYLVLSSYNQLLTPGTLPNNVKYVDLSSYNKLLTPETLPNKVKYLVL 702
N+P+ G++ N++ YL L YNQ++TPG LP +V+Y+ + N+ L +++P VKYL L
Sbjct: 988 NEPILLGSIGNEINYLSLPIYNQMITPGALPPSVQYLLFNKLNQYLECDSIPESVKYLDL 1047
Query: 703 SS 708
+
Sbjct: 1048 GN 1049
Score = 57.0 bits (136), Expect = 3e-06
Identities = 62/243 (25%), Positives = 103/243 (42%), Gaps = 11/243 (4%)
Frame = +1
Query: 22 QTNTFKRANQSSFVHFKMQKIKEGYRRRHDYIIPKFISFQSGYLDF------SFYQVSLK 183
++ R +S + K E + D+ + K I S Y F +V L+
Sbjct: 903 ESGVIHRDIKSDHIILAQDKNNETIVKFIDFGLSKQIEKNSKYYSFVGTDSHMAPEVKLQ 962
Query: 184 NVKYLDLSSYYQLHAPRRFRKIVEYLNLSYGQLLTLGTLPKYVMSLDLSSYNQLFTPGRL 363
N K S + + +P ++ L L + + LG++ + L L YNQ+ TPG L
Sbjct: 963 NGKAGSDSVFEKYLSPN-----LKKLELKTNEPILLGSIGNEINYLSLPIYNQMITPGAL 1017
Query: 364 PIRVS-LDLSSYNQLFTPGRLPDTVDYLKLSSYNQLFTPG-TLPNHMVYLNLSSYN--QP 531
P V L + NQ +P++V YL L + + G L N + + +N QP
Sbjct: 1018 PPSVQYLLFNKLNQYLECDSIPESVKYLDLGNEFDIEKNGINLSNESILVLRCGFNFTQP 1077
Query: 532 LTPGTLPNKVKYLVLSSYNQLLTPGTLPNNVKYVDL-SSYNKLLTPETLPNKVKYLVLSS 708
++ LP V L L +YN L ++P V + L S++ + + LP V L +
Sbjct: 1078 VSQRLLPYSVTDLQLYNYNINLKRNSIPTLVTSLTLGSNFTNIESLSFLPENVNSLAIGI 1137
Query: 709 YDQ 717
D+
Sbjct: 1138 KDE 1140
Score = 54.7 bits (130), Expect = 1e-05
Identities = 38/116 (32%), Positives = 58/116 (50%)
Frame = +1
Query: 436 DYLKLSSYNQLFTPGTLPNHMVYLNLSSYNQPLTPGTLPNKVKYLVLSSYNQLLTPGTLP 615
+Y+ S + P LPN NL +N+ + P +KYL L +YNQ + +
Sbjct: 507 NYVIKDSIMEPIEPIYLPNQCT--NLPLFNEVIVPSGFFG-IKYLELQAYNQPIDSIFIF 563
Query: 616 NNVKYVDLSSYNKLLTPETLPNKVKYLVLSSYDQLLTPGNITK*CGSVSIYHHMIN 783
N V+Y+ L S+N L P LP +KYL L S++ L G+I + S+ H + N
Sbjct: 564 NGVEYLILQSFNHPLGPGILPESIKYLKLPSFNHPLKEGSIPR-----SVIHLVFN 614
Score = 47.8 bits (112), Expect = 0.002
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 10/177 (5%)
Frame = +1
Query: 187 VKYLDLSSYYQLHAPRRFRKIVEYLNL-SYGQLLTLGTLPKYVMSLDLSSYNQLFTPGRL 363
+KYL+L +Y Q VEYL L S+ L G LP+ + L L S+N G +
Sbjct: 545 IKYLELQAYNQPIDSIFIFNGVEYLILQSFNHPLGPGILPESIKYLKLPSFNHPLKEGSI 604
Query: 364 PIRV-SLDLSSYNQ-------LFTPGRLPDTVDYLKLSSYNQLFTPGTLPNHMVYLNLSS 519
P V L + +NQ L P L D D + Y L ++ + +
Sbjct: 605 PRSVIHLVFNKFNQFSLDEINLILPKFL-DFGDAFDIEKYGILIPEDSI---LTLRTGFT 660
Query: 520 YNQPLTPGTLPNKVKYLVLSSYNQLLTPGTLPNNVKYVDL-SSYNKLLTPETLPNKV 687
+NQP+ +P+ V L L +YN + P ++P ++ + L S++ + LP+ +
Sbjct: 661 FNQPINQRYIPSSVTDLQLYNYNLKILPHSIPRSIIMLTLGSNFTHFESLSNLPSSI 717
Score = 39.7 bits (91), Expect = 0.43
Identities = 16/46 (34%), Positives = 29/46 (63%)
Frame = +1
Query: 586 NQLLTPGTLPNNVKYVDLSSYNKLLTPETLPNKVKYLVLSSYDQLL 723
N+ + G++ N + Y+ L YN+++TP LP V+YL+ + +Q L
Sbjct: 988 NEPILLGSIGNEINYLSLPIYNQMITPGALPPSVQYLLFNKLNQYL 1033
Score = 38.1 bits (87), Expect = 1.2
Identities = 23/48 (47%), Positives = 24/48 (50%)
Frame = +2
Query: 731 GTLPNNVEVCRFXXXXXXTHTWNITK*WGSMVDLSSYNKLLTPRTLPN 874
GTLPNNV+ VDLSSYNKLLTP TLPN
Sbjct: 98 GTLPNNVKY----------------------VDLSSYNKLLTPETLPN 123
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 3,494,511,090
Number of extensions: 74920178
Number of successful extensions: 160815
Number of sequences better than 10.0: 137
Number of HSP's gapped: 159581
Number of HSP's successfully gapped: 424
Length of query: 686
Length of database: 1,040,966,779
Length adjustment: 136
Effective length of query: 550
Effective length of database: 605,184,019
Effective search space: 332851210450
Effective search space used: 332851210450
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
8 |
| VF (FL, S) |
0 |
| AH (FL, L) |
12 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
0 |
| SH (FL, L) |
4 |
| SF (FL, S) |
0 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |