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Dicty_cDB
Contig List | Clone List | cDNA Library List
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U01750-1
Contig ID Contig-U01750-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U01750-1 (Contig-U01750-1Q) /CSM_Contig/Contig-U01750-1Q.Seq.d
GGAAGTTGTAATAATAAAAAAATAAAAATAAAAATAAAAAAATAAAAAAA
AATAAAAATAAAAATAGTAATTTTAAAACAGGATTTCAAATATTTTAAAT
AAATAAATAAAAAAAATCAAAAATAAAATAAAATGAGTCATCAACATTTA
TCAAAAATAACATATAAAATGTTAACACCAAATATGGTACCAAAAGTTGT
AGATTCAATTACTAAAAGTTTTGCAACAGATCCATTTTCAATTGCGTTAA
ATTTAAATAAAAATAATTGGACTGAAATGGCAACATTATTCGTTGACAGA
GCTGCAAAAAAAGATTTAAGCTTAGTTGCAATTGATAATGAAACAGATCA
AATCGTTGGTTGTATTATTAATGAAGATTGGAAAACTAGAGAACCTGAAG
AATTTCATACAAGTTTAGATAAAAAATGGGAACCAGTAAAATCAATGTTT
TCAAATTTACATCATAAATATAAAAAAGAACATCCAAATACAATTAGATT
TGGTGAGATTATTCATTCTTTATATTTTACATGCGTTGTTCCAAGTTCTA
GAGGTCAAGGTGTTGCATATGATATGTGGTATCATAGTACAGATATAGGT
AGAGCTCATAACTTTCAATATATGTGTGCAGAAACTGCAACTGTATCTGG
TCAAAAACTTTGTGAACATATTGGATTTACTCCAAAATCATCAATCCCAT
ATAATAAATTTGAATACCAAGGTGAAAGAATTTTTCAAAAACTTCCTCAA
ATCAACACAAATTTCGAAAAATTAACAATTTGGGAAAAGAAAATCGTTTC
AAATCTTTATT
Gap no gap
Contig length 811
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 3337090
End point 3336279
Strand (PLUS/MINUS) MINUS
Number of clones 2
Number of EST 2
Link to clone list U01750
List of clone(s) 

est1=VSG194E,1,651
est2=SSG449F,291,812
Translated Amino Acid sequence 
gscnnkkikikikk*kkikikivilkqdfkyfk*inkknqk*NKMSHQHLSKITYKMLTP
NMVPKVVDSITKSFATDPFSIALNLNKNNWTEMATLFVDRAAKKDLSLVAIDNETDQIVG
CIINEDWKTREPEEFHTSLDKKWEPVKSMFSNLHHKYKKEHPNTIRFGEIIHSLYFTCVV
PSSRGQGVAYDMWYHSTDIGRAHNFQYMCAETATVSGQKLCEHIGFTPKSSIPYNKFEYQ
GERIFQKLPQINTNFEKLTIWEKKIVSNLY
Translated Amino Acid sequence (All Frames) 
Frame A:
gscnnkkikikikk*kkikikivilkqdfkyfk*inkknqk*NKMSHQHLSKITYKMLTP
NMVPKVVDSITKSFATDPFSIALNLNKNNWTEMATLFVDRAAKKDLSLVAIDNETDQIVG
CIINEDWKTREPEEFHTSLDKKWEPVKSMFSNLHHKYKKEHPNTIRFGEIIHSLYFTCVV
PSSRGQGVAYDMWYHSTDIGRAHNFQYMCAETATVSGQKLCEHIGFTPKSSIPYNKFEYQ
GERIFQKLPQINTNFEKLTIWEKKIVSNLY


Frame B:
evviikk*k*k*knkkk*k*k**f*nrisnilnk*ikkiknkik*viniyqk*hikc*hq
iwyqkl*iqllkvlqqihfqlr*i*ikiiglkwqhysltelqkki*a*lqlimkqikslv
vllmkigklenlknfiqv*ikngnq*nqcfqiyiinikkniqiqldlvrlfilyilhalf
qvlevkvlhmicgiivqi*velitfnicvqklqlylvknfvnildllqnhqshiinlntk
vkeffknflkstqiskn*qfgkrksfqifi


Frame C:
kl***knknknkkikknknknsnfktgfqif*ink*kkskik*nesstfiknni*nvntk
ygtkscrfny*kfcnrsifncvkfk*k*ld*ngniir*qsckkrfklscn***nrsnrwl
yy**rlen*rt*risykfr*kmgtskinvfkfts*i*krtskyn*iw*dysffifymrcs
kf*rsrcci*yvvs*yryr*ss*lsiyvcrncnciwsktl*tywiyskiinpi**i*ipr
*knfsktssnqhkfrkinnlgkenrfksl
own update 2004. 6. 7
Homology vs CSM-cDNA 
Query= Contig-U01750-1 (Contig-U01750-1Q)
/CSM_Contig/Contig-U01750-1Q.Seq.d
         (811 letters)

Database: CSM
           8361 sequences; 7,895,291 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U01750-1 (Contig-U01750-1Q) /CSM_Contig/Conti...  1300  0.0
Contig-U09194-1 (Contig-U09194-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U11146-1 (Contig-U11146-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U11098-1 (Contig-U11098-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U09176-1 (Contig-U09176-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U12817-1 (Contig-U12817-1Q) /CSM_Contig/Conti...    38  0.020
Contig-U12571-1 (Contig-U12571-1Q) /CSM_Contig/Conti...    38  0.020
Contig-U11922-1 (Contig-U11922-1Q) /CSM_Contig/Conti...    38  0.020
Contig-U10928-1 (Contig-U10928-1Q) /CSM_Contig/Conti...    38  0.020
Contig-U01985-1 (Contig-U01985-1Q) /CSM_Contig/Conti...    38  0.020

>Contig-U01750-1 (Contig-U01750-1Q) /CSM_Contig/Contig-U01750-1Q.Seq.d
          Length = 811

 Score = 1300 bits (656), Expect = 0.0
 Identities = 670/677 (98%)
 Strand = Plus / Plus

                                                                       
Query: 135 gagtcatcaacatttatcaaaaataacatataaaatgttaacaccaaatatggtaccaaa 194
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 gagtcatcaacatttatcaaaaataacatataaaatgttaacaccaaatatggtaccaaa 194

                                                                       
Query: 195 agttgtagattcaattactaaaagttttgcaacagatccattttcaattgcgttaaattt 254
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 agttgtagattcaattactaaaagttttgcaacagatccattttcaattgcgttaaattt 254

                                                                       
Query: 255 aaataaaaataattggactgaaatggcaacattattcgttgacagagctgcnnnnnnnga 314
           |||||||||||||||||||||||||||||||||||||||||||||||||||       ||
Sbjct: 255 aaataaaaataattggactgaaatggcaacattattcgttgacagagctgcaaaaaaaga 314

                                                                       
Query: 315 tttaagcttagttgcaattgataatgaaacagatcaaatcgttggttgtattattaatga 374
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tttaagcttagttgcaattgataatgaaacagatcaaatcgttggttgtattattaatga 374

                                                                       
Query: 375 agattggaaaactagagaacctgaagaatttcatacaagtttagataaaaaatgggaacc 434
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 agattggaaaactagagaacctgaagaatttcatacaagtttagataaaaaatgggaacc 434

                                                                       
Query: 435 agtaaaatcaatgttttcaaatttacatcataaatataaaaaagaacatccaaatacaat 494
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 agtaaaatcaatgttttcaaatttacatcataaatataaaaaagaacatccaaatacaat 494

                                                                       
Query: 495 tagatttggtgagattattcattctttatattttacatgcgttgttccaagttctagagg 554
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tagatttggtgagattattcattctttatattttacatgcgttgttccaagttctagagg 554

                                                                       
Query: 555 tcaaggtgttgcatatgatatgtggtatcatagtacagatataggtagagctcataactt 614
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tcaaggtgttgcatatgatatgtggtatcatagtacagatataggtagagctcataactt 614

                                                                       
Query: 615 tcaatatatgtgtgcagaaactgcaactgtatctggtcaaaaactttgtgaacatattgg 674
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tcaatatatgtgtgcagaaactgcaactgtatctggtcaaaaactttgtgaacatattgg 674

                                                                       
Query: 675 atttactccaaaatcatcaatcccatataataaatttgaataccaaggtgaaagaatttt 734
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 atttactccaaaatcatcaatcccatataataaatttgaataccaaggtgaaagaatttt 734

                                                                       
Query: 735 tcaaaaacttcctcaaatcaacacaaatttcgaaaaattaacaatttgggaaaagaaaat 794
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 tcaaaaacttcctcaaatcaacacaaatttcgaaaaattaacaatttgggaaaagaaaat 794

                            
Query: 795 cgtttcaaatctttatt 811
           |||||||||||||||||
Sbjct: 795 cgtttcaaatctttatt 811


 Score = 61.9 bits (31), Expect = 1e-09
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 65 tagtaattttaaaacaggatttcaaatattt 95
          |||||||||||||||||||||||||||||||
Sbjct: 65 tagtaattttaaaacaggatttcaaatattt 95


 Score = 30.2 bits (15), Expect = 4.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                         
Query: 1  ggaagttgtaataat 15
          |||||||||||||||
Sbjct: 1  ggaagttgtaataat 15


>Contig-U09194-1 (Contig-U09194-1Q) /CSM_Contig/Contig-U09194-1Q.Seq.d
          Length = 710

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 395 ctgaagaatttcatacaagtttagataaaa 424
           ||||||||||| ||| ||||||||||||||
Sbjct: 662 ctgaagaattttataaaagtttagataaaa 691


>Contig-U11146-1 (Contig-U11146-1Q) /CSM_Contig/Contig-U11146-1Q.Seq.d
          Length = 2547

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 164  ataaaatgttaacaccaaata 184
            |||||||||||||||||||||
Sbjct: 1447 ataaaatgttaacaccaaata 1467


  Database: CSM
    Posted date:  Jun 7, 2004  8:33 AM
  Number of letters in database: 7,895,291
  Number of sequences in database:  8361
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 20,447
Number of Sequences: 8361
Number of extensions: 20447
Number of successful extensions: 2450
Number of sequences better than 10.0: 285
length of query: 811
length of database: 7,895,291
effective HSP length: 16
effective length of query: 795
effective length of database: 7,761,515
effective search space: 6170404425
effective search space used: 6170404425
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 5. 6
Homology vs DNA 
Query= Contig-U01750-1 (Contig-U01750-1Q) /CSM_Contig/Contig-U01750-1Q.Seq.d
         (811 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU266110) Dictyostelium discoideum vegetative cDNA clone:VS...   632   0.0    2
(AU266109) Dictyostelium discoideum vegetative cDNA clone:VS...   268   e-140  3
(AU073232) Dictyostelium discoideum slug cDNA, clone SSG449.      432   e-119  2
(U00089) Mycoplasma pneumoniae M129, complete genome.              50   0.13   1
(CU570967) M.truncatula DNA sequence from clone MTH2-180E19 ...    40   0.34   5
(BH770944) LLMGtag673 MG1363 Random Sequence Tag Library Lac...    48   0.53   1
(EE605021) CCUPAS120LF05b08F Pigeon pea Leaf cDNA Library Ca...    48   0.53   1
(AV357862) Mus musculus egg female in vitro fertilized eggs ...    48   0.53   1
(AM406671) Lactococcus lactis subsp. cremoris MG1363, comple...    48   0.53   1
(EA102671) Sequence 54 from patent US 7195870.                     36   0.84   3
(AX323568) Sequence 56 from Patent WO0192565.                      36   0.84   3
(AX277891) Sequence 54 from Patent WO0177375.                      36   0.84   3
(GM995916) Sequence 56 from Patent EP2014776.                      36   0.84   3
(EK059049) 1092960059281 Global-Ocean-Sampling_GS-31-01-01-1...    40   1.4    2
(ER377713) 1093042701503 Global-Ocean-Sampling_GS-34-01-01-1...    42   1.5    2
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    38   1.6    12
(CT005242) Pan troglodytes chromosome X clone PTB-112O07 map...    46   2.1    1
(BX322609) Human DNA sequence from clone RP13-1021K9 on chro...    46   2.1    1
(AL731895) Human DNA sequence *** SEQUENCING IN PROGRESS ***...    46   2.1    1
(CP000425) Lactococcus lactis subsp. cremoris SK11, complete...    46   2.1    1
(CP000414) Leuconostoc mesenteroides subsp. mesenteroides AT...    46   2.1    1
(AM438182) Vitis vinifera contig VV78X064424.2, whole genome...    40   2.4    5
(EJ751574) 1092963039866 Global-Ocean-Sampling_GS-30-02-01-1...    32   2.5    3
(AC018735) Homo sapiens BAC clone RP11-372A6 from 2, complet...    44   2.5    4
(AC201401) Strongylocentrotus purpuratus clone R3-17L13, WOR...    38   2.6    4
(AC069429) Homo sapiens chromosome 3 clone RP11-553E4, WORKI...    40   3.2    3
(AM488869) Vitis vinifera contig VV78X103875.8, whole genome...    36   3.7    3
(AE017245) Mycoplasma synoviae 53, complete genome.                34   3.8    15
(AC215371) Solanum lycopersicum chromosome 2 clone C02HBa005...    40   4.0    5
(AC224633) Bos taurus clone CH240-480F23, WORKING DRAFT SEQU...    32   4.0    2
(AC230798) Bos taurus clone CH240-498L15, WORKING DRAFT SEQU...    32   4.0    2
(AC005170) Arabidopsis thaliana chromosome 2 clone T29E15 ma...    34   4.1    7
(EJ275905) 1095366020327 Global-Ocean-Sampling_GS-27-01-01-1...    34   4.1    2
(EJ352836) 1092963605054 Global-Ocean-Sampling_GS-28-01-01-1...    38   4.5    2
(ER543433) 1093016089880 Global-Ocean-Sampling_GS-35-01-01-1...    38   4.6    2
(DD391993) Method and nucleic acids for the improved treatme...    38   4.7    3
(DD391719) Method and nucleic acids for the improved treatme...    38   4.7    3
(CQ807249) Sequence 699 from Patent WO2004035803.                  38   4.7    3
(CQ806975) Sequence 425 from Patent WO2004035803.                  38   4.7    3
(AC123513) Dictyostelium discoideum strain AX4 chromosome 2 ...    38   5.3    5
(EJ568912) 1092960015738 Global-Ocean-Sampling_GS-29-01-01-1...    36   5.3    2
(EK518195) 1095515508202 Global-Ocean-Sampling_GS-32-01-01-1...    42   5.3    2
(EK218290) 1095460127685 Global-Ocean-Sampling_GS-31-01-01-1...    42   5.5    2
(DJ060343) Method and nucleic acids for the improved treatme...    38   5.6    3
(DJ060221) Method and nucleic acids for the improved treatme...    38   5.6    3
(DD392061) Method and nucleic acids for the improved treatme...    38   5.6    3
(DD391787) Method and nucleic acids for the improved treatme...    38   5.6    3
(CS124690) Sequence 376 from Patent WO2005059172.                  38   5.6    3
(CS124568) Sequence 254 from Patent WO2005059172.                  38   5.6    3
(CQ807317) Sequence 767 from Patent WO2004035803.                  38   5.6    3
(CQ807043) Sequence 493 from Patent WO2004035803.                  38   5.6    3
(EK040307) 1092959513301 Global-Ocean-Sampling_GS-31-01-01-1...    38   6.0    2
(DU842503) 281099 Tomato HindIII BAC Library Solanum lycoper...    42   6.4    2
(CC241718) CH261-132O12_Sp6.1 CH261 Gallus gallus genomic cl...    40   6.7    2
(AE017243) Mycoplasma hyopneumoniae J, complete genome.            34   6.7    13
(AX345389) Sequence 460 from Patent WO0200928.                     32   6.9    4
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    36   7.3    11
(CT030019) Zebrafish DNA sequence from clone DKEY-202M23 in ...    32   7.9    5
(GF046540) pRRL2:Newb:20080411:49631 USMARC Pig Breed SNP Di...    44   8.3    1
(AM459219) Vitis vinifera, whole genome shotgun sequence, co...    44   8.3    1
(Z81485) Caenorhabditis elegans Cosmid C49F5.                      44   8.3    1
(AC113724) Rattus norvegicus clone CH230-63B15, WORKING DRAF...    44   8.3    1
(AC095657) Rattus norvegicus clone CH230-8L8, *** SEQUENCING...    44   8.3    1
(AC094295) Rattus norvegicus clone CH230-3F2, *** SEQUENCING...    44   8.3    1
(AC094263) Rattus norvegicus clone CH230-3F1, *** SEQUENCING...    44   8.3    1
(CT737145) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.3    1
(AP007379) Lotus japonicus genomic DNA, chromosome 6, clone:...    44   8.3    1
(AC223342) Bos taurus clone CH240-422A21, WORKING DRAFT SEQU...    44   8.3    1
(AC200141) Zea mays chromosome 2 clone CH201-29B11; ZMMBBc00...    44   8.3    1
(AC184636) Strongylocentrotus purpuratus clone R3-4015O21, W...    44   8.3    1
(AC176254) Strongylocentrotus purpuratus clone R3-3060J7, WO...    44   8.3    1
(BH131797) ENTOV19TF Entamoeba histolytica Sheared DNA Entam...    44   8.3    1
(FI247257) CccaBb006-N21JF CccABb Cajanus cajan genomic clon...    44   8.3    1
(ER779798) TAACSP3AShA_0095A17R TAACSP3AShA Triticum aestivu...    44   8.3    1
(EJ966203) 1093022044001 Global-Ocean-Sampling_GS-30-02-01-1...    44   8.3    1
(EJ525846) 1092955184714 Global-Ocean-Sampling_GS-29-01-01-1...    44   8.3    1
(EJ047700) 1095454129287 Global-Ocean-Sampling_GS-26-01-01-1...    44   8.3    1
(ED617910) GM_WBa0011H08.f GM_WBa Glycine max genomic clone ...    44   8.3    1
(DH770209) Rattus norvegicus DNA, BAC clone: RNB1-354N04, 5'...    44   8.3    1
(CZ881381) OC__Ba0284B07.r OC__Ba Oryza coarctata genomic cl...    44   8.3    1
(CZ847410) OC__Ba0234L04.r OC__Ba Oryza coarctata genomic cl...    44   8.3    1
(CZ793991) OC__Ba0162G04.f OC__Ba Oryza coarctata genomic cl...    44   8.3    1
(CZ781177) OC__Ba0142J14.f OC__Ba Oryza coarctata genomic cl...    44   8.3    1
(CZ714300) OC__Ba0037F16.f OC__Ba Oryza coarctata genomic cl...    44   8.3    1
(CZ709882) OC__Ba0031A07.r OC__Ba Oryza coarctata genomic cl...    44   8.3    1
(CZ700285) OC__Ba0015H18.f OC__Ba Oryza coarctata genomic cl...    44   8.3    1
(AG679622) Macaca fuscata fuscata DNA, clone: MSB2-107L04_R,...    44   8.3    1
(CL407848) ZMMBBb0419A10f ZMMBBb (HindIII) Zea mays subsp. m...    44   8.3    1
(CL208231) ZMMBBb0559N06r ZMMBBb (HindIII) Zea mays subsp. m...    44   8.3    1
(CL054265) CH216-78P16_Sp6.1 CH216 Xenopus (Silurana) tropic...    44   8.3    1
(CL014629) ZMMBBb0548J12r ZMMBBb (HindIII) Zea mays subsp. m...    44   8.3    1
(ES276989) AJAF-aaa07f07.g1 Aph cDNA-InfSeedling Aphanomyces...    44   8.3    1
(DV297666) NABM617TF Aedes aegypti infected with Brugia Mala...    44   8.3    1
(AU052934) Dictyostelium discoideum slug cDNA, clone SLF347.       44   8.3    1
(BQ916015) QHB16I01.yg.ab1 QH_ABCDI sunflower RHA801 Heliant...    44   8.3    1
(BJ979686) Brachionus plicatilis NH1L mRNA, clone: BpA0211, ...    44   8.3    1
(FG068831) UI-FF-IF0-aab-m-18-0-UI.r1 Ceratitis capitata emb...    44   8.3    1
(ES468695) AH19E06.B Brachionus plicatilis NHIL unnormalized...    44   8.3    1
(ES468686) AH19D09.G Brachionus plicatilis NHIL unnormalized...    44   8.3    1
(ES468262) AH14F08.G Brachionus plicatilis NHIL unnormalized...    44   8.3    1
(ES467986) AH12B08.B Brachionus plicatilis NHIL unnormalized...    44   8.3    1
(ES467412) AH06C11.B Brachionus plicatilis NHIL unnormalized...    44   8.3    1
(ES467211) AH04B07.B Brachionus plicatilis NHIL unnormalized...    44   8.3    1
(ES466977) AH01G03.B Brachionus plicatilis NHIL unnormalized...    44   8.3    1
(AM441943) Vitis vinifera, whole genome shotgun sequence, co...    40   8.5    3
(U51133) Staphylococcus aureus phosphoenolpyruvate carboxyki...    34   8.6    3
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet...    34   9.0    18

>(AU266110) Dictyostelium discoideum vegetative cDNA clone:VSG194,
           3' end single read.
          Length = 573

 Score =  632 bits (319), Expect(2) = 0.0
 Identities = 319/319 (100%)
 Strand = Plus / Plus


Query: 313 gatttaagcttagttgcaattgataatgaaacagatcaaatcgttggttgtattattaat 372
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 gatttaagcttagttgcaattgataatgaaacagatcaaatcgttggttgtattattaat 294


Query: 373 gaagattggaaaactagagaacctgaagaatttcatacaagtttagataaaaaatgggaa 432
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 gaagattggaaaactagagaacctgaagaatttcatacaagtttagataaaaaatgggaa 354


Query: 433 ccagtaaaatcaatgttttcaaatttacatcataaatataaaaaagaacatccaaataca 492
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 ccagtaaaatcaatgttttcaaatttacatcataaatataaaaaagaacatccaaataca 414


Query: 493 attagatttggtgagattattcattctttatattttacatgcgttgttccaagttctaga 552
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 attagatttggtgagattattcattctttatattttacatgcgttgttccaagttctaga 474


Query: 553 ggtcaaggtgttgcatatgatatgtggtatcatagtacagatataggtagagctcataac 612
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 ggtcaaggtgttgcatatgatatgtggtatcatagtacagatataggtagagctcataac 534


Query: 613 tttcaatatatgtgtgcag 631
           |||||||||||||||||||
Sbjct: 535 tttcaatatatgtgtgcag 553

 Score =  262 bits (132), Expect(2) = 0.0
 Identities = 134/135 (99%)
 Strand = Plus / Plus


Query: 171 gttaacaccaaatatggtaccaaaagttgtagattcaattactaaaagttttgcaacaga 230
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93  gttaacnccaaatatggtaccaaaagttgtagattcaattactaaaagttttgcaacaga 152


Query: 231 tccattttcaattgcgttaaatttaaataaaaataattggactgaaatggcaacattatt 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 tccattttcaattgcgttaaatttaaataaaaataattggactgaaatggcaacattatt 212


Query: 291 cgttgacagagctgc 305
           |||||||||||||||
Sbjct: 213 cgttgacagagctgc 227

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 954,459,780
Number of extensions: 63909672
Number of successful extensions: 5441192
Number of sequences better than 10.0: 109
Length of query: 811
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 787
Effective length of database: 99,340,224,878
Effective search space: 78180756978986
Effective search space used: 78180756978986
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.18
Homology vs Protein 
Query= Contig-U01750-1 (Contig-U01750-1Q) /CSM_Contig/Contig-U01750-1Q.Seq.d
         (811 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68337_7(Z68337|pid:none) Caenorhabditis elegans Cosmid M7, comp...    53   1e-05
T23823(T23823)hypothetical protein M7.12 - Caenorhabditis elegans      52   2e-05
DQ491002_853(DQ491002|pid:none) Paramecium bursaria Chlorella vi...    50   1e-04
T18156(T18156) hypothetical protein A654L - Chlorella virus PBCV...    44   0.008
T23818(T23818) hypothetical protein M7.8 - Caenorhabditis elegan...    43   0.011
AF014940_3(AF014940|pid:none) Caenorhabditis elegans cosmid W02D...    38   0.45
T29842(T29842)hypothetical protein W02D7.5 - Caenorhabditis eleg...    35   2.2
AE014295_556(AE014295|pid:none) Bifidobacterium longum NCC2705, ...    35   2.9
CP000605_647(CP000605|pid:none) Bifidobacterium longum DJO10A, c...    35   3.8
T23933(T23933) hypothetical protein R05H10.1 - Caenorhabditis el...    34   5.0
CP001252_365(CP001252|pid:none) Shewanella baltica OS223, comple...    34   5.0
DQ890022_747(DQ890022|pid:none) Paramecium bursaria Chlorella vi...    34   6.5
AE014187_56(AE014187|pid:none) Plasmodium falciparum 3D7 chromos...    33   8.5
FN321288_1(FN321288|pid:none) Schistosoma japonicum isolate Anhu...    33   8.5

>Z68337_7(Z68337|pid:none) Caenorhabditis elegans Cosmid M7,
           complete sequence.
          Length = 241

 Score = 52.8 bits (125), Expect = 1e-05
 Identities = 43/192 (22%), Positives = 93/192 (48%), Gaps = 12/192 (6%)
 Frame = +1

Query: 193 KVVDSITKSFATD-PFSIALNLNKNNWTEMATLFVDRAAKKDLSLVAIDNETDQIVGCII 369
           +VVD +  +F  + P S A  + +++         +R  K ++S++A   ++D+IVGC++
Sbjct: 36  EVVDFLNNNFRVEEPLSKAAGMTESDIQSCFDGVFERVLKNEVSILARSKQSDEIVGCML 95

Query: 370 NEDWKTREP-------EEFHTSLDKKW-EPVKSMFSNLHHKYKKEHPNTIRFGEIIHSLY 525
           N  WK  +P       E+F    D+K    +  + + LH  + K  P+      ++H
Sbjct: 96  NSVWKRNDPKKNEDEAEDFEFGGDRKGVMTIGEILNELHESFWKLRPDQ---HTVLH-FE 151

Query: 526 FTCVVPSSRGQGVA--YDMWYHSTDIGRAHNFQYMCAETATVSGQKLCEHIGF-TPKSSI 696
            + V  + + QG+A  +  W    ++ ++     + AE ++++ Q L    G+ T  S++
Sbjct: 152 ISSVNKNHQRQGLASKFMNWTEKKELLKSVEASSIVAEASSLANQILLSKRGYETVASTL 211

Query: 697 PYNKFEYQGERI 732
             ++ +  G++I
Sbjct: 212 LSSRIDVNGKQI 223

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,109,188,228
Number of extensions: 21001062
Number of successful extensions: 57583
Number of sequences better than 10.0: 14
Number of HSP's gapped: 57572
Number of HSP's successfully gapped: 14
Length of query: 270
Length of database: 1,051,180,864
Length adjustment: 126
Effective length of query: 144
Effective length of database: 643,374,430
Effective search space: 92645917920
Effective search space used: 92645917920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.78  gvh: 0.37  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.37  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: mitochondrial
	 28.0 %: cytoplasmic
	 28.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for Contig-U01750-1 is mit
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0