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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U11298-1
Contig ID Contig-U11298-1
Contig update 2002.12.18
Contig sequence 
>Contig-U11298-1 (Contig-U11298-1Q) /CSM_Contig/Contig-U11298-1Q.Seq.d
ATTTTATTTTAAATAATAAAAAATATAAAATTATATATATATAAAAAAAA
TGGCAAAATCGTCAAAATCAAGGAATTCAGAAAATACAGAAGAAAATACA
ACACCAATAATAAAGAAAAAACCAGTTTCAAAAGGAAAGAAAAAACAGTC
AGATTTATTTGAATCAATAAAAAAGAAATGTAATTTACAAAGAGTTTTAG
ATGATTGGATTGATAGATATACAGATCAAGATCCAGAAAAAGCAGTTTGG
GAATTATTAGTATTTTTATTTGAATGTGGTGGTGCAGATACAAATATAAC
ATTTAAAGATTTTAAAGATTTAGATATTGGAGTTGCTGCAACATCAATTG
TTGAACAAAGTGATTCACAACATTATCCATTGGGTAATAAGAGATCAAAG
ATATTGATAGAGAATTTCAATCAATTTTGGAGTGAGTTAGTAGAGAAATG
CAAAAAGTCCATAATATTTGACAACTACCTATTGGACATGGTTGCCCTAT
GGTTGCATGAGTTGTCGTTCGCAGCAAAGCGTGGTATTCGTCATGTTGCA
ACTCAGGCTGCCATTCAAATTACGTCATCGTTGATATCGATTTGCAATGA
TTTGAGAAAGGATTTAAATGTTACCACTAGACAATTGGCGGGTGAGACAA
AGAATAGCTCACGTCAGAA----------TAATTTTTCAGATGAAAAGTT
TGCAAGTATGATTTTTAAATTTACAGATGGTAGTGTTAATGGTATTCCAA
TTCAAACCATTGATGATTCAGATACAATTATCATTCATTCAACAAGTATA
TACTCTCAATTATTAATGTGGTCATTATTTTCTGCAATTCCTTCAAAATT
CTATCAAATCGATCCAATGAATGTTAATATTCTTCAAATGTTTTATCTTT
TATCTTCAAGAGTTATTTCAACTTTAAAAAATGATGAAATTACTCATAGA
TTAAGACATTTTATGTTTACAACTTTTATTGAAACACGTTCATTATTTTC
ACCAGTTTTAAATTTAACAAATATGACAGTATATGATATTAGTTTACCAT
CAGAAAATTTATTACTTAAAAATATTTCATCATTATTTTCACAAGAAAAT
GAATATTCATTGACATATTTAAAGGTAGAATTTATAAAGAATCAACAAAT
TAGTTTAGAGAAAAAGAAGTTGGCAGGAATTAATAAATCAAAGAGAAAGA
GTGGTGGTAGTAAAAAATCAACTGGTGCTGGTGCAACTTCTGAAGAAGAG
GTAACATCACACTCTGAAAAGGAAACTTCTGATCATGAAACTGATACAAA
TCAACAACAACAACAAAAAATCAAAGAAGATGATCTTCAATTATTGAATG
ACTTTATACCAGATCAACAATTTGGTGAAAGAGCAGTAGAATTAGTTACT
ACCATTTGTAATTGTATTAAATATTCATTTGTAACACAATCAACTCAATT
GTTTAGATCATTATTGAAACAGATTGCATTATCATCTTCAAAGAGAGCAG
TAGATATCATTAGAGATTTCTTTAGAAAATATCCAATTCAGTCTGGTAAA
TTTGAAATGGAAGTTGTCATTGATCTTATCAATTCATTCCAATCAACTTG
CCTTAAAGAGGATGTCGCTTCAAATGCCGATTTCCAACATCATATGTTTT
CAAGATTCCGTTCCCTTTGTCAATGGTTAGTAACTGACTTTATTAAACAT
CCTGATACTCTCAGAGGTGTAATTGAACACTTTTTAAATTATGCTTTAAA
GAATCCACAAGCTGAAAAATTAGAAGAATTATTAGAAATCTTGGATTTCT
TAGGTTCAAAACTTTCTGAAAAATCTTCAATTGAATTTATTAAAAAAAGA
ATAATATTTAGTGATGACTTCCAACATATTGATTTAATTAATAAAATTAA
TAATACTATTGAATTTCAAACTATTCAAAATCTTGAACCTTCTGGAAAAA
CTTCAGGTGGTAAGAAAATAAAACAACAATTAAAATTTGTTTCTCCAACT
AAAAAAACTACACCAAAGAAAAGAAGAAGAAAATCTTCAAAAGAAAGTGA
AAGTGAAGAGAGTGAACCTGATAGTGAAGAAAGTGATTATGAAGAAGATA
GAAGAGAAGAATTACAAAGACAAAAGAAAATCATAAAAGATCAAATTCAA
AAAGATCAAGATCAAGAAATTGAAGAACAAAGAGCATCATCGAAGATTCT
TCTGATTTGAAGTTCCAACGATCCAAAAAAGAAATTAAAAACTA
Gap gap included
Contig length 2234
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 980498
End point 978261
Strand (PLUS/MINUS) MINUS
Number of clones 6
Number of EST 10
Link to clone list U11298
List of clone(s) 

est1=AHQ566F,1,607
est2=CHJ363F,41,555
est3=AHE482F,54,630
est4=CHP449F,97,669
est5=AHL488F,670,1349
est6=AHE482Z,992,1817
est7=AHQ566Z,1099,1864
est8=CHJ363Z,1349,1926
est9=AHL488Z,1438,2235
est10=SHE365Z,1523,2230
Translated Amino Acid sequence 
fyfk**ki*NYIYIKKMAKSSKSRNSENTEENTTPIIKKKPVSKGKKKQSDLFESIKKKC
NLQRVLDDWIDRYTDQDPEKAVWELLVFLFECGGADTNITFKDFKDLDIGVAATSIVEQS
DSQHYPLGNKRSKILIENFNQFWSELVEKCKKSIIFDNYLLDMVALWLHELSFAAKRGIR
HVATQAAIQITSSLISICNDLRKDLNVTTRQLAGETKNSSRQ---

---NFSDEKFASMIFKFTDGSVNGIPIQTIDDSDTIIIHSTSIYSQLLMWSLFSAIPSKF
YQIDPMNVNILQMFYLLSSRVISTLKNDEITHRLRHFMFTTFIETRSLFSPVLNLTNMTV
YDISLPSENLLLKNISSLFSQENEYSLTYLKVEFIKNQQISLEKKKLAGINKSKRKSGGS
KKSTGAGATSEEEVTSHSEKETSDHETDTNQQQQQKIKEDDLQLLNDFIPDQQFGERAVE
LVTTICNCIKYSFVTQSTQLFRSLLKQIALSSSKRAVDIIRDFFRKYPIQSGKFEMEVVI
DLINSFQSTCLKEDVASNADFQHHMFSRFRSLCQWLVTDFIKHPDTLRGVIEHFLNYALK
NPQAEKLEELLEILDFLGSKLSEKSSIEFIKKRIIFSDDFQHIDLINKINNTIEFQTIQN
LEPSGKTSGGKKIKQQLKFVSPTKKTTPKKRRRKSSKESESEESEPDSEESDYEEDRREE
LQRQKKIIKDQIQKDQDQEIEEQRASSKILLI*ssndpkkklkt
Translated Amino Acid sequence (All Frames) 
Frame A:
ilf*iikniklyiykkngkivkikefrkyrrkyntnnkektsfkrkektvrfi*inkkem
*ftksfr*ld**iyrsrsrksslgiisifi*mwwcrykyni*rf*rfrywsccninc*tk
*fttlsig**eikdidrefqsile*vsremqkvhni*qlpighgcpmva*vvvrskawys
sccnsgchsnyvivdidlq*fekgfkcyh*tigg*dke*ltse---

---*ffr*kvckydf*iyrw*c*wysnsnh**frynyhsfnkyilsiinvviifcnsfki
lsnrsnec*yssnvlsfifksyfnfkk**nys*iktfyvynfy*ntfiiftsfkfnkyds
i*y*ftirkfit*kyfiiiftrk*ifidifkgriykestn*frekevgrn**ikekeww*
*kinwcwcnf*rrgnitl*kgnf*s*n*yksttttknqrr*ssiie*lytrstiw*kssr
isyyhl*ly*ificntinsiv*iiietdciiifkessryh*rfl*kisnsvw*i*ngsch
*syqfipinlp*rgcrfkcrfptsyvfkipfplsmvsn*ly*ts*ysqrcn*tlfklcfk
ests*kirriirnlgflrfktf*kifn*iy*kknni***lpty*fn**n**yy*isnysk
s*tfwknfrw*enkttikicfsn*knytkekkkkifkrk*k*re*t***rk*l*rr*krr
itktkenhkrsnskrsrsrn*rtksiiedssdlkfqrskkeikn

Frame B:
fyfk**ki*NYIYIKKMAKSSKSRNSENTEENTTPIIKKKPVSKGKKKQSDLFESIKKKC
NLQRVLDDWIDRYTDQDPEKAVWELLVFLFECGGADTNITFKDFKDLDIGVAATSIVEQS
DSQHYPLGNKRSKILIENFNQFWSELVEKCKKSIIFDNYLLDMVALWLHELSFAAKRGIR
HVATQAAIQITSSLISICNDLRKDLNVTTRQLAGETKNSSRQ---

---NFSDEKFASMIFKFTDGSVNGIPIQTIDDSDTIIIHSTSIYSQLLMWSLFSAIPSKF
YQIDPMNVNILQMFYLLSSRVISTLKNDEITHRLRHFMFTTFIETRSLFSPVLNLTNMTV
YDISLPSENLLLKNISSLFSQENEYSLTYLKVEFIKNQQISLEKKKLAGINKSKRKSGGS
KKSTGAGATSEEEVTSHSEKETSDHETDTNQQQQQKIKEDDLQLLNDFIPDQQFGERAVE
LVTTICNCIKYSFVTQSTQLFRSLLKQIALSSSKRAVDIIRDFFRKYPIQSGKFEMEVVI
DLINSFQSTCLKEDVASNADFQHHMFSRFRSLCQWLVTDFIKHPDTLRGVIEHFLNYALK
NPQAEKLEELLEILDFLGSKLSEKSSIEFIKKRIIFSDDFQHIDLINKINNTIEFQTIQN
LEPSGKTSGGKKIKQQLKFVSPTKKTTPKKRRRKSSKESESEESEPDSEESDYEEDRREE
LQRQKKIIKDQIQKDQDQEIEEQRASSKILLI*ssndpkkklkt

Frame C:
filnnkkykiiyi*kkwqnrqnqgiqkiqkkiqhq**rknqfqkerknsqiylnq*krnv
iykef*miglidiqikiqkkqfgny*yfylnvvvqiqi*hlkilki*ilellqhqllnkv
ihniihwvirdqry**risinfgvs**rnaksp*yltttywtwlpygcmscrsqqsvvfv
mlqlrlpfklrhr*yrfami*eri*mlpldnwrvrqriahvr---

---ifqmkslqv*flnlqmvvlmvfqfkplmiqiqlsfiqqvytlny*cghyflqflqns
iksiq*mliffkcfifylqelfql*kmmkllid*dilclqlllkhvhyfhqf*i*qi*qy
milvyhqkiyylkifhhyfhkkmnih*hi*r*nl*rinklv*rkrswqelinqrervvvv
knqlvlvqllkkr*hhtlkrkllimkliqinnnnkkskkmifny*mtlyqinnlvkeq*n
*llpfvivlnihl*hnqlncldhy*nrlhyhlqreq*isleisleniqfslvnlkwklsl
ilsihsnqlalkrmslqmpisniicfqdsvpfvng**ltllnililsev*lntf*iml*r
ihklkn*kny*kswis*vqnflknlqlnllkke*ylvmtsnili*likliillnfklfki
lnlleklqvvrk*nnn*nlflqlkklhqrkeeenlqkkvkvkrvnlivkkvimkkieekn
ykdkrks*kikfkkikikklknkehhrrff*fevptiqkrn*kl
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U11298-1 (Contig-U11298-1Q)
/CSM_Contig/Contig-U11298-1Q.Seq.d
         (2244 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U11298-1 (Contig-U11298-1Q) /CSM_Contig/Conti...  3519  0.0
Contig-U12552-1 (Contig-U12552-1Q) /CSM_Contig/Conti...    46  2e-04
Contig-U10801-1 (Contig-U10801-1Q) /CSM_Contig/Conti...    46  2e-04
Contig-U05292-1 (Contig-U05292-1Q) /CSM_Contig/Conti...    44  7e-04
Contig-U00977-1 (Contig-U00977-1Q) /CSM_Contig/Conti...    44  7e-04
Contig-U12080-1 (Contig-U12080-1Q) /CSM_Contig/Conti...    42  0.003
Contig-U09255-1 (Contig-U09255-1Q) /CSM_Contig/Conti...    42  0.003
Contig-U09239-1 (Contig-U09239-1Q) /CSM_Contig/Conti...    42  0.003
Contig-U13909-1 (Contig-U13909-1Q) /CSM_Contig/Conti...    40  0.010
Contig-U13011-1 (Contig-U13011-1Q) /CSM_Contig/Conti...    40  0.010

>Contig-U11298-1 (Contig-U11298-1Q) /CSM_Contig/Contig-U11298-1Q.Seq.d
          Length = 2244

 Score = 3519 bits (1775), Expect = 0.0
 Identities = 1819/1826 (99%)
 Strand = Plus / Plus

                                                                        
Query: 175  gaaatgtaatttacaaagagttttagatgattggattgatagatatacagatcaagatcc 234
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175  gaaatgtaatttacaaagagttttagatgattggattgatagatatacagatcaagatcc 234

                                                                        
Query: 235  agaaaaagcagtttgggaattattagtatttttatttgaatgtggtggtgcagatacaaa 294
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235  agaaaaagcagtttgggaattattagtatttttatttgaatgtggtggtgcagatacaaa 294

                                                                        
Query: 295  tataacatttaaagattttaaagatttagatattggagttgctgcaacatcaattgttga 354
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295  tataacatttaaagattttaaagatttagatattggagttgctgcaacatcaattgttga 354

                                                                        
Query: 355  acaaagtgattcacaacattatccattgggtaataagagatcaaagatattgatagagaa 414
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355  acaaagtgattcacaacattatccattgggtaataagagatcaaagatattgatagagaa 414

                                                                        
Query: 415  tttcaatcaattttggagtgagttagtagagaaatgcaaaaagtccataatatttgacaa 474
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415  tttcaatcaattttggagtgagttagtagagaaatgcaaaaagtccataatatttgacaa 474

                                                                        
Query: 475  ctacctattggacatggttgccctatggttgcatgagttgtcgttcgcagcaaagcgtgg 534
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475  ctacctattggacatggttgccctatggttgcatgagttgtcgttcgcagcaaagcgtgg 534

                                                                        
Query: 535  tattcgtcatgttgcaactcaggctgccattcaaattacgtcatcgttgatatcgatttg 594
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535  tattcgtcatgttgcaactcaggctgccattcaaattacgtcatcgttgatatcgatttg 594

                                                                        
Query: 595  caatgatttgagaaaggatttaaatgttaccactagacaattggcgggtgagacaaagaa 654
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595  caatgatttgagaaaggatttaaatgttaccactagacaattggcgggtgagacaaagaa 654

                                                                        
Query: 655  tagctcacgtcagaannnnnnnnnntaatttttcagatgaaaagtttgcaagtatgattt 714
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655  tagctcacgtcagaannnnnnnnnntaatttttcagatgaaaagtttgcaagtatgattt 714

                                                                        
Query: 715  ttaaatttacagatggtagtgttaatggtattccaattcaaaccattgatgattcagata 774
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715  ttaaatttacagatggtagtgttaatggtattccaattcaaaccattgatgattcagata 774

                                                                        
Query: 775  caattatcattcattcaacaagtatatactctcaattattaatgtggtcattattttctg 834
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775  caattatcattcattcaacaagtatatactctcaattattaatgtggtcattattttctg 834

                                                                        
Query: 835  caattccttcaaaattctatcaaatcgatccaatgaatgttaatattcttcaaatgtttt 894
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835  caattccttcaaaattctatcaaatcgatccaatgaatgttaatattcttcaaatgtttt 894

                                                                        
Query: 895  atcttttatcttcaagagttatttcaactttaaaaaatgatgaaattactcatagattaa 954
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895  atcttttatcttcaagagttatttcaactttaaaaaatgatgaaattactcatagattaa 954

                                                                        
Query: 955  gacattttatgtttacaacttttattgaaacacgttcattattttcaccagttttaaatt 1014
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 955  gacattttatgtttacaacttttattgaaacacgttcattattttcaccagttttaaatt 1014

                                                                        
Query: 1015 taacaaatatgacagtatatgatattagtttaccatcagaaaatttattacttaaaaata 1074
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1015 taacaaatatgacagtatatgatattagtttaccatcagaaaatttattacttaaaaata 1074

                                                                        
Query: 1075 tttcatcattattttcacaagaaaatgaatattcattgacatatttaaaggtagaattta 1134
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1075 tttcatcattattttcacaagaaaatgaatattcattgacatatttaaaggtagaattta 1134

                                                                        
Query: 1135 taaagaatcaacaaattagtttagagaaaaagaagttggcaggaattaataaatcaaaga 1194
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1135 taaagaatcaacaaattagtttagagaaaaagaagttggcaggaattaataaatcaaaga 1194

                                                                        
Query: 1195 gaaagagtggtggtagtaaaaaatcaactggtgctggtgcaacttctgaagaagaggtaa 1254
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1195 gaaagagtggtggtagtaaaaaatcaactggtgctggtgcaacttctgaagaagaggtaa 1254

                                                                        
Query: 1255 catcacactctgaaaaggaaacttctgatcatgaaactgatacaaatcaacaacaacaac 1314
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1255 catcacactctgaaaaggaaacttctgatcatgaaactgatacaaatcaacaacaacaac 1314

                                                                        
Query: 1315 aaaaaatcaaagaagatgatcttcaattattgaatgactttataccagatcaacaatttg 1374
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1315 aaaaaatcaaagaagatgatcttcaattattgaatgactttataccagatcaacaatttg 1374

                                                                        
Query: 1375 gtgaaagagcagtagaattagttactaccatttgtaattgtattaaatattcatttgtaa 1434
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1375 gtgaaagagcagtagaattagttactaccatttgtaattgtattaaatattcatttgtaa 1434

                                                                        
Query: 1435 cacaatcaactcaattgtttagatcattattgaaacagattgcattatcatcttcaaaga 1494
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1435 cacaatcaactcaattgtttagatcattattgaaacagattgcattatcatcttcaaaga 1494

                                                                        
Query: 1495 gagcagtagatatcattagagatttctttagaaaatatccaattcagtctggtaaatttg 1554
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1495 gagcagtagatatcattagagatttctttagaaaatatccaattcagtctggtaaatttg 1554

                                                                        
Query: 1555 aaatggaagttgtcattgatcttatcaattcattccaatcaacttgccttaaagaggatg 1614
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1555 aaatggaagttgtcattgatcttatcaattcattccaatcaacttgccttaaagaggatg 1614

                                                                        
Query: 1615 tcgcttcaaatgccgatttccaacatcatatgttttcaagattccgttccctttgtcaat 1674
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1615 tcgcttcaaatgccgatttccaacatcatatgttttcaagattccgttccctttgtcaat 1674

                                                                        
Query: 1675 ggttagtaactgactttattaaacatcctgatactctcagaggtgtaattgaacactttt 1734
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1675 ggttagtaactgactttattaaacatcctgatactctcagaggtgtaattgaacactttt 1734

                                                                        
Query: 1735 taaattatgctttaaagaatccacaagctgaaaaattagaagaattattagaaatcttgg 1794
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1735 taaattatgctttaaagaatccacaagctgaaaaattagaagaattattagaaatcttgg 1794

                                                                        
Query: 1795 atttcttaggttcaaaactttctgaaaaatcttcaattgaatttattnnnnnnngaataa 1854
            |||||||||||||||||||||||||||||||||||||||||||||||       ||||||
Sbjct: 1795 atttcttaggttcaaaactttctgaaaaatcttcaattgaatttattaaaaaaagaataa 1854

                                                                        
Query: 1855 tatttagtgatgacttccaacatattgatttaattaataaaattaataatactattgaat 1914
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1855 tatttagtgatgacttccaacatattgatttaattaataaaattaataatactattgaat 1914

                                                                        
Query: 1915 ttcaaactattcaaaatcttgaaccttctggaaaaacttcaggtggtaagaaaataaaac 1974
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1915 ttcaaactattcaaaatcttgaaccttctggaaaaacttcaggtggtaagaaaataaaac 1974

                                      
Query: 1975 aacaattaaaatttgtttctccaact 2000
            ||||||||||||||||||||||||||
Sbjct: 1975 aacaattaaaatttgtttctccaact 2000


 Score =  157 bits (79), Expect = 6e-38
 Identities = 79/79 (100%)
 Strand = Plus / Plus

                                                                        
Query: 2166 gaaattgaagaacaaagagcatcatcgaagattcttctgatttgaagttccaacgatcca 2225
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2166 gaaattgaagaacaaagagcatcatcgaagattcttctgatttgaagttccaacgatcca 2225

                               
Query: 2226 aaaaagaaattaaaaacta 2244
            |||||||||||||||||||
Sbjct: 2226 aaaaagaaattaaaaacta 2244


 Score = 61.9 bits (31), Expect = 3e-09
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 51 tggcaaaatcgtcaaaatcaaggaattcaga 81
          |||||||||||||||||||||||||||||||
Sbjct: 51 tggcaaaatcgtcaaaatcaaggaattcaga 81


>Contig-U12552-1 (Contig-U12552-1Q) /CSM_Contig/Contig-U12552-1Q.Seq.d
          Length = 1221

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 1298 aaatcaacaacaacaacaaaaaa 1320
            |||||||||||||||||||||||
Sbjct: 1060 aaatcaacaacaacaacaaaaaa 1082


 Score = 34.2 bits (17), Expect = 0.63
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                
Query: 781 tcattcattcaacaagtatat 801
           ||||||||||||||| |||||
Sbjct: 911 tcattcattcaacaattatat 931


>Contig-U10801-1 (Contig-U10801-1Q) /CSM_Contig/Contig-U10801-1Q.Seq.d
          Length = 1521

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 1302 caacaacaacaacaaaaaatcaa 1324
            |||||||||||||||||||||||
Sbjct: 38   caacaacaacaacaaaaaatcaa 60


 Score = 30.2 bits (15), Expect = 9.9
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                               
Query: 1298 aaatcaacaacaacaacaa 1316
            |||| ||||||||||||||
Sbjct: 28   aaatgaacaacaacaacaa 46


 Score = 30.2 bits (15), Expect = 9.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                           
Query: 1302 caacaacaacaacaa 1316
            |||||||||||||||
Sbjct: 35   caacaacaacaacaa 49


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 46,681
Number of Sequences: 6905
Number of extensions: 46681
Number of successful extensions: 9736
Number of sequences better than 10.0: 1243
length of query: 2244
length of database: 5,674,871
effective HSP length: 16
effective length of query: 2228
effective length of database: 5,564,391
effective search space: 12397463148
effective search space used: 12397463148
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.23
Homology vs DNA 
Query= Contig-U11298-1 (Contig-U11298-1Q) /CSM_Contig/Contig-U11298-1Q.Seq.d
         (2244 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ336454) Dictyostelium discoideum cDNA clone:dda53p22, 5' ...  1221   0.0    2
(BJ357727) Dictyostelium discoideum cDNA clone:dda64c17, 3' ...  1023   0.0    3
(BJ381186) Dictyostelium discoideum cDNA clone:ddc40n15, 3' ...   946   0.0    2
(BJ350412) Dictyostelium discoideum cDNA clone:dda39d22, 3' ...   920   0.0    4
(BJ354545) Dictyostelium discoideum cDNA clone:dda53p22, 3' ...   781   0.0    2
(BJ405670) Dictyostelium discoideum cDNA clone:dds32b17, 3' ...   613   0.0    4
(BJ369920) Dictyostelium discoideum cDNA clone:ddc52b14, 5' ...   870   0.0    3
(BJ332628) Dictyostelium discoideum cDNA clone:dda39d22, 5' ...   896   0.0    1
(BJ339204) Dictyostelium discoideum cDNA clone:dda64c17, 5' ...   850   0.0    1
(BJ366912) Dictyostelium discoideum cDNA clone:ddc40n15, 5' ...   739   0.0    1
(AC212590) Pongo abelii chromosome UNKNOWN clone CH276-109M9...    40   5e-05  7
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    40   3e-04  21
(CP000084) Candidatus Pelagibacter ubique HTCC1062, complete...    38   6e-04  21
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi...    38   0.002  19
(AP002428) Homo sapiens genomic DNA, chromosome 11q clone:RP...    42   0.005  9
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    46   0.016  19
(AC163156) Bos taurus clone CH240-78K11, WORKING DRAFT SEQUE...    48   0.025  9
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    38   0.037  21
(AL110479) Caenorhabditis elegans YAC Y105C5B.                     36   0.040  15
(AJ969073) Spiroplasma citri pSci5 plasmid.                        44   0.060  3
(AX345578) Sequence 649 from Patent WO0200928.                     40   0.068  2
(AC182399) Pan troglodytes BAC clone CH251-19C24 from chromo...    40   0.071  9
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    38   0.085  16
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    34   0.093  13
(CP000962) Clostridium botulinum A3 str. Loch Maree, complet...    52   0.094  1
(EK407979) 1095505093503 Global-Ocean-Sampling_GS-31-01-01-1...    42   0.11   2
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    44   0.13   15
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome.         32   0.14   20
(CP000768) Campylobacter jejuni subsp. doylei 269.97, comple...    38   0.15   19
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen...    32   0.15   14
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet...    38   0.17   22
(FF485738) G708P5110RB5.T0 Acorn worm normalized gastrula pE...    40   0.19   3
(AE014841) Plasmodium falciparum 3D7 chromosome 11 section 6...    36   0.20   15
(EK326353) 1095467008043 Global-Ocean-Sampling_GS-31-01-01-1...    42   0.20   2
(AC162094) Bos taurus clone CH240-106L16, WORKING DRAFT SEQU...    40   0.21   2
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...    36   0.23   16
(AC149209) Medicago truncatula chromosome 2 BAC clone mth2-3...    44   0.23   9
(BD453019) Diagnosis of Diseases Associated with tumor suppr...    48   0.24   2
(AX251498) Sequence 466 from Patent WO0168912.                     48   0.24   2
(AZ529062) ENTCE73TR Entamoeba histolytica Sheared DNA Entam...    38   0.25   3
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701...    30   0.29   16
(AL953844) Zebrafish DNA sequence from clone DKEY-29G23 in l...    50   0.37   1
(EJ773029) 1092975700884 Global-Ocean-Sampling_GS-30-02-01-1...    50   0.37   1
(EJ761589) 1092963137972 Global-Ocean-Sampling_GS-30-02-01-1...    50   0.37   1
(CX034154) 1346636 NCCCWA 10RT#3 Oncorhynchus mykiss cDNA cl...    50   0.37   1
(AI876749) uj35c09.y1 Sugano mouse kidney mkia Mus musculus ...    50   0.37   1
(CB855009) USDA-FP_101318 Adult Alate Brown Citrus Aphid Tox...    30   0.46   4
(CP000825) Prochlorococcus marinus str. MIT 9215, complete g...    36   0.46   20
(AE017197) Rickettsia typhi str. Wilmington complete genome.       38   0.51   22
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    32   0.52   14
(EU186685) Craugastor loki voucher MVZ137064 tRNA-Phe (trnF)...    48   0.59   2
(CU570643) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   0.69   7
(AM431055) Vitis vinifera contig VV78X177149.5, whole genome...    36   0.81   4
(CU459086) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   0.93   10
(AE017308) Mycoplasma mobile 163K complete genome.                 36   0.94   22
(AZ533910) ENTBG43TR Entamoeba histolytica Sheared DNA Entam...    42   0.96   3
(BX005172) Human DNA sequence *** SEQUENCING IN PROGRESS ***...    38   0.96   11
(CU459173) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   1.1    10
(CP000552) Prochlorococcus marinus str. MIT 9515, complete g...    38   1.1    24
(AC172074) Bos taurus clone CH240-277A22, *** SEQUENCING IN ...    38   1.1    6
(AC202479) Medicago truncatula clone mth2-164l8, WORKING DRA...    36   1.3    9
(DX553604) GH_MBb0073E10r GH_MBb Gossypium hirsutum genomic ...    40   1.3    2
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568...    32   1.3    14
(AF459639) Triticum monococcum BAC clones 116F2 and 115G1 ge...    48   1.5    1
(AB182464) Pichia membranifaciens mitochondrial gene for sma...    48   1.5    1
(CU466524) Pig DNA sequence from clone CH242-95O23 on chromo...    48   1.5    1
(EU494534) Scaptodrosophila lebanonensis voucher 105639 16S ...    48   1.5    1
(AC110435) Rattus norvegicus clone CH230-288I22, *** SEQUENC...    48   1.5    1
(AC224717) Bos taurus clone CH240-477L19, WORKING DRAFT SEQU...    48   1.5    1
(ER925564) MUGQ_CH252P285F14Sp6_CP419_059 CHORI-252 Vervet M...    48   1.5    1
(EJ564359) 1092959696210 Global-Ocean-Sampling_GS-29-01-01-1...    48   1.5    1
(EJ519936) 1092955131085 Global-Ocean-Sampling_GS-29-01-01-1...    48   1.5    1
(EJ418149) 1093012201920 Global-Ocean-Sampling_GS-28-01-01-1...    48   1.5    1
(EJ396860) 1093012004884 Global-Ocean-Sampling_GS-28-01-01-1...    48   1.5    1
(EJ165307) 1092344063293 Global-Ocean-Sampling_GS-27-01-01-1...    48   1.5    1
(AC216106) MACACA MULATTA BAC clone CH250-347B10 from chromo...    44   1.5    6
(AC148013) Mus musculus BAC clone RP23-134C2 from 18, comple...    42   1.6    5
(EJ371176) 1092963724800 Global-Ocean-Sampling_GS-28-01-01-1...    34   1.6    4
(AC232183) Lama pacos clone CH246-463H22, WORKING DRAFT SEQU...    44   1.6    3
(CP000399) Borrelia afzelii PKo plasmid lp32, complete seque...    40   1.7    5
(CL889644) abf96d04.x1 Soybean random, unfiltered genomic li...    40   1.7    2
(CP000721) Clostridium beijerinckii NCIMB 8052, complete gen...    36   1.7    21
(AC182732) Pan troglodytes BAC clone CH251-716H13 from chrom...    40   1.7    7
(CP001056) Clostridium botulinum B str. Eklund 17B, complete...    40   1.8    20
(AC021251) Homo sapiens clone RP11-8P4, LOW-PASS SEQUENCE SA...    44   1.8    3
(AP006147) Lotus japonicus genomic DNA, chromosome 4, clone:...    44   1.8    4
(AE002139) Ureaplasma parvum serovar 3 str. ATCC 700970 sect...    38   1.9    3
(CU234112) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.9    9
(AL035476) Plasmodium falciparum MAL4P3.                           36   2.0    16
(AP004244) Homo sapiens genomic DNA, chromosome 11q clone:RP...    38   2.2    11
(AM622089) Entamoeba invadens IP1 GSS, clone inv089f10.p1k.        36   2.3    3
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255...    34   2.5    19
(CZ758599) OC__Ba0111E09.r OC__Ba Oryza coarctata genomic cl...    46   2.6    2
(AL844509) Plasmodium falciparum chromosome 13.                    40   2.6    17
(AC005308) Plasmodium falciparum chromosome 12 clone 3D7, **...    34   2.6    11
(AL691515) Human DNA sequence from clone RP11-316I3 on chrom...    38   2.6    12
(AC161846) Bos taurus clone CH240-101C22, WORKING DRAFT SEQU...    40   2.7    7
(EC336744) KIDNEYF089536N17 POSSUM_01-POSSUM-KIDNEY-2KB Tric...    42   2.8    2
(CU927885) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   2.8    7
(AF250284) Amsacta moorei entomopoxvirus, complete genome.         32   2.8    2

>(BJ336454) Dictyostelium discoideum cDNA clone:dda53p22, 5' end,
            single read.
          Length = 680

 Score = 1221 bits (616), Expect(2) = 0.0
 Identities = 616/616 (100%)
 Strand = Plus / Plus


Query: 680  taatttttcagatgaaaagtttgcaagtatgatttttaaatttacagatggtagtgttaa 739
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    taatttttcagatgaaaagtttgcaagtatgatttttaaatttacagatggtagtgttaa 60


Query: 740  tggtattccaattcaaaccattgatgattcagatacaattatcattcattcaacaagtat 799
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   tggtattccaattcaaaccattgatgattcagatacaattatcattcattcaacaagtat 120


Query: 800  atactctcaattattaatgtggtcattattttctgcaattccttcaaaattctatcaaat 859
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121  atactctcaattattaatgtggtcattattttctgcaattccttcaaaattctatcaaat 180


Query: 860  cgatccaatgaatgttaatattcttcaaatgttttatcttttatcttcaagagttatttc 919
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181  cgatccaatgaatgttaatattcttcaaatgttttatcttttatcttcaagagttatttc 240


Query: 920  aactttaaaaaatgatgaaattactcatagattaagacattttatgtttacaacttttat 979
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241  aactttaaaaaatgatgaaattactcatagattaagacattttatgtttacaacttttat 300


Query: 980  tgaaacacgttcattattttcaccagttttaaatttaacaaatatgacagtatatgatat 1039
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301  tgaaacacgttcattattttcaccagttttaaatttaacaaatatgacagtatatgatat 360


Query: 1040 tagtttaccatcagaaaatttattacttaaaaatatttcatcattattttcacaagaaaa 1099
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361  tagtttaccatcagaaaatttattacttaaaaatatttcatcattattttcacaagaaaa 420


Query: 1100 tgaatattcattgacatatttaaaggtagaatttataaagaatcaacaaattagtttaga 1159
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421  tgaatattcattgacatatttaaaggtagaatttataaagaatcaacaaattagtttaga 480


Query: 1160 gaaaaagaagttggcaggaattaataaatcaaagagaaagagtggtggtagtaaaaaatc 1219
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481  gaaaaagaagttggcaggaattaataaatcaaagagaaagagtggtggtagtaaaaaatc 540


Query: 1220 aactggtgctggtgcaacttctgaagaagaggtaacatcacactctgaaaaggaaacttc 1279
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541  aactggtgctggtgcaacttctgaagaagaggtaacatcacactctgaaaaggaaacttc 600


Query: 1280 tgatcatgaaactgat 1295
            ||||||||||||||||
Sbjct: 601  tgatcatgaaactgat 616

 Score = 67.9 bits (34), Expect(2) = 0.0
 Identities = 34/34 (100%)
 Strand = Plus / Plus


Query: 1326 gaagatgatcttcaattattgaatgactttatac 1359
            ||||||||||||||||||||||||||||||||||
Sbjct: 647  gaagatgatcttcaattattgaatgactttatac 680

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 2,563,124,589
Number of extensions: 167927360
Number of successful extensions: 14839961
Number of sequences better than 10.0: 258
Length of query: 2244
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 2220
Effective length of database: 97,308,875,965
Effective search space: 216025704642300
Effective search space used: 216025704642300
X1: 11 (21.8 bits)
S2: 23 (46.1 bits)
protein update 2009. 6.29
Homology vs Protein 
Query= Contig-U11298-1 (Contig-U11298-1Q) /CSM_Contig/Contig-U11298-1Q.Seq.d
         (2244 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC161103_1(BC161103|pid:none) Xenopus tropicalis hypothetical pr...    85   1e-14
CR786576_4(CR786576|pid:none) Zebrafish DNA sequence from clone ...    84   2e-14
BC098993_1(BC098993|pid:none) Xenopus laevis hypothetical protei...    84   3e-14
CR749433_1(CR749433|pid:none) Homo sapiens mRNA; cDNA DKFZp781H1...    83   4e-14
(Q8WVM7) RecName: Full=Cohesin subunit SA-1; AltName: Full=Strom...    83   4e-14
AL672089_3(AL672089|pid:none) Mouse DNA sequence from clone RP23...    83   4e-14
AK313559_1(AK313559|pid:none) Homo sapiens cDNA, FLJ94121, highl...    83   4e-14
AL831939_1(AL831939|pid:none) Homo sapiens mRNA; cDNA DKFZp451H0...    83   4e-14
(Q8N3U4) RecName: Full=Cohesin subunit SA-2; AltName: Full=Strom...    83   4e-14
AL355476_1(AL355476|pid:none) Human DNA sequence from clone RP11...    83   4e-14
AL672089_2(AL672089|pid:none) Mouse DNA sequence from clone RP23...    83   4e-14
AL355476_3(AL355476|pid:none) Human DNA sequence from clone RP11...    83   4e-14
BC062954_1(BC062954|pid:none) Mus musculus stromal antigen 1, mR...    83   5e-14
AK048671_1(AK048671|pid:none) Mus musculus 0 day neonate cerebel...    83   5e-14
(Q9DGN1) RecName: Full=Cohesin subunit SA-1;          Short=xSA-...    83   5e-14
CR627425_1(CR627425|pid:none) Homo sapiens mRNA; cDNA DKFZp686P1...    82   1e-13
(Q9DGN0) RecName: Full=Cohesin subunit SA-2;          Short=xSA-...    78   1e-12
AC005309_34(AC005309|pid:none) Arabidopsis thaliana chromosome 2...    77   3e-12
AM456886_1(AM456886|pid:none) Vitis vinifera contig VV78X038090....    74   2e-11
BX296565_1(BX296565|pid:none) Zebrafish DNA sequence from clone ...    72   9e-11
AC148611_7(AC148611|pid:none) Oryza sativa (japonica cultivar-gr...    69   7e-10
AK292394_1(AK292394|pid:none) Homo sapiens cDNA FLJ76939 complet...    69   9e-10
BC140932_1(BC140932|pid:none) Homo sapiens stromal antigen 3, mR...    69   9e-10
CS300513_1(CS300513|pid:none) Sequence 21 from Patent EP1661986.       69   9e-10
AK158240_1(AK158240|pid:none) Mus musculus adult inner ear cDNA,...    67   4e-09
AK145898_1(AK145898|pid:none) Mus musculus 13 days pregnant adul...    67   4e-09
AE017341_781(AE017341|pid:none) Cryptococcus neoformans var. neo...    63   5e-08
T13854(T13854) nuclear protein SA - fruit fly (Drosophila melano...    63   5e-08
AK302587_1(AK302587|pid:none) Homo sapiens cDNA FLJ55913 complet...    62   1e-07
AL355476_4(AL355476|pid:none) Human DNA sequence from clone RP11...    61   2e-07
T21091(T21091) hypothetical protein F18E2.3 - Caenorhabditis ele...    60   4e-07
AM920436_198(AM920436|pid:none) Penicillium chrysogenum Wisconsi...    59   6e-07
Z98597_19(Z98597|pid:none) S.pombe chromosome I cosmid c17H9.          59   1e-06
AK043215_1(AK043215|pid:none) Mus musculus 7 days neonate cerebe...    54   2e-05
CR954201_474(CR954201|pid:none) Ostreococcus tauri strain OTTH05...    51   2e-04
T50221(T37885;T50221)hypothetical protein SPAC607.01 SPAC17H9.20...    50   3e-04
CR382132_808(CR382132|pid:none) Yarrowia lipolytica strain CLIB1...    45   0.015
AL833816_1(AL833816|pid:none) Homo sapiens mRNA; cDNA DKFZp434L2...    43   0.056
FM992688_1304(FM992688|pid:none) Candida dubliniensis CD36 chrom...    42   0.095
AL355476_5(AL355476|pid:none) Human DNA sequence from clone RP11...    42   0.12
AL844508_120(AL844508|pid:none) Plasmodium falciparum 3D7 chromo...    41   0.21
AL590443_26(AL590443|pid:none) chromosome III of strain GB-M1 of...    40   0.28
CP000812_905(CP000812|pid:none) Thermotoga lettingae TMO, comple...    39   1.1
FM992689_205(FM992689|pid:none) Candida dubliniensis CD36 chromo...    38   1.8
CP001229_855(CP001229|pid:none) Sulfurihydrogenibium azorense Az...    37   2.3
(Q09760) RecName: Full=Cullin-3;          Short=Cul-3;  &CU32967...    37   2.3
BC136227_1(BC136227|pid:none) Xenopus tropicalis DNA-repair prot...    37   2.3
S62405(S62405)hypothetical protein SPAC24H6.03 - fission yeast  ...    37   2.3
AE016823_808(AE016823|pid:none) Leptospira interrogans serovar C...    37   4.0
CU928169_182(CU928169|pid:none) Kluyveromyces thermotolerans str...    37   4.0
(Q8C0R9) RecName: Full=Leucine-rich repeat and death domain-cont...    37   4.0
BC141026_1(BC141026|pid:none) Mus musculus RIKEN cDNA 4932412H11...    37   4.0
AE010300_3317(AE010300|pid:none) Leptospira interrogans serovar ...    37   4.0
AE014188_497(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    36   5.2
(Q0H8X8) RecName: Full=Probable intron-encoded endonuclease aI2;...    36   6.8
AE013599_3383(AE013599|pid:none) Drosophila melanogaster chromos...    36   6.8
AK017978_1(AK017978|pid:none) Mus musculus adult male thymus cDN...    35   8.9
CP000728_72(CP000728|pid:none) Clostridium botulinum F str. Lang...    35   8.9
AY458642_9(AY458642|pid:none) Uncultured marine bacterium 560 cl...    35   8.9
CT573072_317(CT573072|pid:none) Kuenenia stuttgartiensis genome ...    35   8.9

>BC161103_1(BC161103|pid:none) Xenopus tropicalis hypothetical
           protein LOC100145469, mRNA (cDNA clone MGC:185085
           IMAGE:7691507), complete cds.
          Length = 1221

 Score = 84.7 bits (208), Expect = 1e-14
 Identities = 60/175 (34%), Positives = 90/175 (51%), Gaps = 6/175 (3%)
 Frame = +2

Query: 152 DLFESIKKKCNLQRVL-DDWIDRYTDQDPEKAVWELLVFLF---ECGGADTNITFKDFKD 319
           DLFE+I+   +   VL DDW+D Y  QD E A+ EL+ FL     C G  T    ++ ++
Sbjct: 118 DLFEAIRMGRSAMHVLVDDWLDSYK-QDREAALLELINFLMLACGCNGVVTLEMLENMQN 176

Query: 320 LDIGVAATSIVEQSDSQHYPL--GNKRSKILIENFNQFWSELVEKCKKSIIFDNYLLDMV 493
            DI +   ++    ++  YPL    K  K    NF  F+  LV +C+ +II+D  L+D +
Sbjct: 177 SDI-IRKMTMEFNEETPDYPLLLSTKPWKKFHANFGDFFKVLVNRCQYNIIYDELLMDAL 235

Query: 494 ALWLHELSFAAKRGIRHVATQAAIQITSSLISICNDLRKDLNVTTRQLAGETKNS 658
              L  LS +  R  RH +T AA+++ S L+ +  D+   LN T RQ   E   S
Sbjct: 236 ISLLTGLSDSQVRAFRHTSTFAAVKLMSGLVKVAWDVSHHLNTTKRQFVVEHAKS 290

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 2,588,408,111
Number of extensions: 43556059
Number of successful extensions: 122204
Number of sequences better than 10.0: 60
Number of HSP's gapped: 121874
Number of HSP's successfully gapped: 60
Length of query: 748
Length of database: 1,040,966,779
Length adjustment: 136
Effective length of query: 612
Effective length of database: 605,184,019
Effective search space: 370372619628
Effective search space used: 370372619628
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.43  gvh: 0.15  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.39  mip: 0.04
 nuc: 0.32  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: nuclear
	 24.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for Contig-U11298-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 3
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 1
SF (FL, S) 0
CH (FL, L) 2
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0