Contig-U11290-1 |
Contig ID |
Contig-U11290-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
gap included |
Contig length |
1603 |
Chromosome number (1..6, M) |
6 |
Chromosome length |
3595308 |
Start point |
2712085 |
End point |
2713679 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
2 |
Number of EST |
3 |
Link to clone list |
U11290 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.23 |
Homology vs DNA |
Query= Contig-U11290-1 (Contig-U11290-1Q) /CSM_Contig/Contig-U11290-1Q.Seq.d (1613 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ350226) Dictyostelium discoideum cDNA clone:dda39m03, 3' ... 1558 0.0 1 (BJ332452) Dictyostelium discoideum cDNA clone:dda39m03, 5' ... 272 e-174 3 (BJ388610) Dictyostelium discoideum cDNA clone:dds6n08, 5' e... 297 e-129 3 (AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 40 6e-04 12 (FE379669) CBNS4019.fwd CBNS_Daphnia_pulex_Chosen_One_Librar... 50 0.014 2 (FE379668) CBNS4019.rev CBNS_Daphnia_pulex_Chosen_One_Librar... 50 0.014 2 (AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 36 0.016 11 (FE421340) CBTX2515.rev CBTX_Daphnia_pulex_Chosen_One_Librar... 50 0.024 2 (FE421341) CBTX2515.fwd CBTX_Daphnia_pulex_Chosen_One_Librar... 50 0.027 2 (AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 38 0.032 6 (CU013520) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 0.033 6 (DE214811) Trifolium pratense DNA, clone:RCG03375. 48 0.040 2 (CU467891) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 0.042 2 (CU468492) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 0.042 2 (AC114261) Dictyostelium discoideum chromosome 2 map 126059-... 38 0.046 6 (CT450264) Sus scrofa genomic clone CH242-433H5, genomic sur... 36 0.053 2 (EY376153) CAXA1602.fwd CAXA Helobdella robusta Subtracted L... 50 0.099 2 (EY377240) CAXA16609.fwd CAXA Helobdella robusta Subtracted ... 50 0.099 2 (EY372286) CAXA13930.fwd CAXA Helobdella robusta Subtracted ... 50 0.10 2 (AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 38 0.10 11 (EY385459) CAXA5701.fwd CAXA Helobdella robusta Subtracted L... 50 0.11 2 (EY345235) CAWZ13745.fwd CAWZ Helobdella robusta Primary Lat... 50 0.11 2 (EY381939) CAXA3767.fwd CAXA Helobdella robusta Subtracted L... 50 0.11 2 (EY366163) CAXA10581.fwd CAXA Helobdella robusta Subtracted ... 50 0.11 2 (EY366068) CAXA10535.fwd CAXA Helobdella robusta Subtracted ... 50 0.12 2 (X03240) Drosophila yakuba complete mitochondrial sequence. 38 0.13 5 (AC152905) Taeniopygia guttata clone TG_Ba-359L6, WORKING DR... 40 0.14 9 (AC115598) Dictyostelium discoideum chromosome 2 map 581427-... 40 0.16 2 (AC116551) Dictyostelium discoideum chromosome 2 map complem... 36 0.16 10 (AE014839) Plasmodium falciparum 3D7 chromosome 11 section 4... 46 0.18 10 (AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 36 0.20 12 (EC822129) SME00006431 esmbsro2 Sawyeria marylandensis cDNA,... 36 0.20 2 (BX511094) Zebrafish DNA sequence from clone CH211-137G12 in... 50 0.26 1 (AC161931) Mus musculus chromosome 3, clone RP23-290N20, com... 50 0.26 1 (AC158669) Mus musculus 6 BAC RP23-66K6 (Roswell Park Cancer... 50 0.26 1 (AC153639) Mus musculus 6 BAC RP23-124H2 (Roswell Park Cance... 50 0.26 1 (AC135860) Mus musculus BAC clone RP24-441J10 from chromosom... 50 0.26 1 (AC123823) Mus musculus BAC clone RP24-63C11 from chromosome... 50 0.26 1 (AC116960) Dictyostelium discoideum chromosome 2 map complem... 50 0.26 1 (AC135363) Mus musculus chromosome UNK clone RP23-341B24, WO... 50 0.26 1 (AC131429) Rattus norvegicus clone CH230-193L4, *** SEQUENCI... 50 0.26 1 (AC120773) Rattus norvegicus clone CH230-65J6, WORKING DRAFT... 50 0.26 1 (AC117142) Rattus norvegicus clone CH230-392D15, *** SEQUENC... 50 0.26 1 (AC095104) Rattus norvegicus clone CH230-7J7, *** SEQUENCING... 50 0.26 1 (AC165830) Bos taurus clone CH240-130F24, WORKING DRAFT SEQU... 50 0.26 1 (AK086573) Mus musculus 15 days embryo head cDNA, RIKEN full... 50 0.26 1 (AK082001) Mus musculus 16 days embryo head cDNA, RIKEN full... 50 0.26 1 (EJ574875) 1092960089245 Global-Ocean-Sampling_GS-29-01-01-1... 50 0.26 1 (EH010874) USDA-FP_183929 Lysiphlebus testaceipes adult whol... 50 0.26 1 (EH010405) USDA-FP_183507 Lysiphlebus testaceipes adult whol... 50 0.26 1 (DB885387) Populus nigra mRNA, clone: PnFL2-059_O20, 5'end. 50 0.26 1 (CK106324) UB17CPA11.5pR Populus active cambium cDNA library... 50 0.26 1 (BJ441100) Dictyostelium discoideum cDNA clone:ddv45m16, 3' ... 50 0.26 1 (BJ340959) Dictyostelium discoideum cDNA clone:dda4f14, 3' e... 50 0.26 1 (BE656417) UI-M-BH0-ajx-c-10-0-UI.r1 NIH_BMAP_M_S1 Mus muscu... 50 0.26 1 (EY384325) CAXA5086.fwd CAXA Helobdella robusta Subtracted L... 50 0.26 1 (EY366963) CAXA11006.fwd CAXA Helobdella robusta Subtracted ... 50 0.26 1 (EY297215) CAWX13240.fwd CAWX Helobdella robusta Primary Ear... 50 0.26 1 (AY700082) Plasmodium falciparum DEAD box DNA helicase gene,... 38 0.28 3 (AC220824) Bos taurus clone CH240-344H24, WORKING DRAFT SEQU... 46 0.29 2 (DE227600) Trifolium pratense DNA, clone:RCG20284. 48 0.30 2 (EY335465) CAWY7040.fwd CAWY Helobdella robusta Subtracted E... 44 0.37 2 (EB564855) AGENCOURT_51105488 D. virilis EST Drosophila viri... 46 0.38 2 (EB558287) AGENCOURT_51898531 D. virilis EST Drosophila viri... 46 0.41 2 (EY301451) CAWX15583.fwd CAWX Helobdella robusta Primary Ear... 44 0.42 2 (AF045453) Dictyostelium discoideum protein kinase YakA (yak... 40 0.50 3 (AL049181) Plasmodium falciparum DNA *** SEQUENCING IN PROGR... 36 0.51 10 (AF310887) Dictyostelium discoideum RacB (racB) gene, partia... 38 0.55 3 (AC104500) Trypanosoma cruzi strain CL Brener chromosome 3 c... 44 0.78 2 (BJ324275) Dictyostelium discoideum cDNA clone:dda5f17, 5' e... 46 0.83 2 (BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ... 38 0.94 19 (EA130308) Sequence 7 from patent US 7217856. 46 0.98 2 (BX322575) Zebrafish DNA sequence from clone CH211-283E2 in ... 48 1.0 1 (AY303234) Sphoeroides nephelus HoxB6b (Hoxb6b) and Hoxb5b (... 48 1.0 1 (AC150162) Solanum demissum chromosome 5 clone PGEC160O2, co... 48 1.0 1 (AC146506) Solanum demissum chromosome 5 clone PGEC989P08, c... 48 1.0 1 (AL158163) Human DNA sequence from clone RP11-348N5 on chrom... 48 1.0 1 (CR925793) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 48 1.0 1 (AC179795) Strongylocentrotus purpuratus clone R3-1014I4, WO... 48 1.0 1 (AC166888) Sorex araneus clone SA_Ba-486M6, WORKING DRAFT SE... 48 1.0 1 (ET778190) CHO_OF575xd07r1.ab1 CHO_OF Nicotiana tabacum geno... 48 1.0 1 (ER810675) PPTCC56TFB Solanum tuberosum RHPOTKEY BAC ends So... 48 1.0 1 (ER450765) 1092963848783 Global-Ocean-Sampling_GS-35-01-01-1... 48 1.0 1 (ED268579) AUAC-aae58f03.g1 Ascaris suum whole genome shotgu... 48 1.0 1 (DE986629) Macropus eugenii DNA, BAC clone: MEB1-197F23_F, 5... 48 1.0 1 (EL532657) EST_omor_eva_11810 omoreva mixed_tissue Osmerus m... 48 1.0 1 (EH015909) USDA-FP_188463 Lysiphlebus testaceipes adult whol... 48 1.0 1 (DY306525) KN0AAL2BE11FM1 KCl-Salt1 Citrus reshni cDNA 5', m... 48 1.0 1 (DR910319) USDA-FP_18447 Citrus sinensis phloem Citrus sinen... 48 1.0 1 (DN623638) UCRCA01_03N07_r Bark of Madame Vinous Sweet Orang... 48 1.0 1 (DN623637) UCRCA01_03N07_f Bark of Madame Vinous Sweet Orang... 48 1.0 1 (BJ340097) Dictyostelium discoideum cDNA clone:dda11j17, 3' ... 48 1.0 1 (FE245820) CAPG9087.rev CAPG Naegleria gruberi amoeba stage ... 48 1.0 1 (FC689008) CAXX20407.fwd CAXX Lottia gigantea from male gona... 48 1.0 1 (EY720779) CS00-C3-703-014-B08-CT.F Sweet orange fruit, deve... 48 1.0 1 (EX449153) Volcani_8_04_E4 Volcani08 Citrus reticulata x Cit... 48 1.0 1 (EV466136) MDEST1182 Hessian fly salivary gland cDNA Library... 48 1.0 1 (BJ403585) Dictyostelium discoideum cDNA clone:dds25i16, 3' ... 36 1.0 3 (BJ333964) Dictyostelium discoideum cDNA clone:dda44k18, 5' ... 46 1.1 2 (AC219486) Bos taurus clone CH240-332F1, WORKING DRAFT SEQUE... 46 1.1 2
>(BJ350226) Dictyostelium discoideum cDNA clone:dda39m03, 3' end, single read. Length = 787
Score = 1558 bits (786), Expect = 0.0 Identities = 786/786 (100%) Strand = Plus / Minus
Query: 828 atcacaccagcaaccatcaatcatcatcacaacaacaacaacaaattataatcgaaaaag 887 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 787 atcacaccagcaaccatcaatcatcatcacaacaacaacaacaaattataatcgaaaaag 728
Query: 888 aagaaaatatttcatcaccattaaataaatcaaagattgaattaccaattataattgcaa 947 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 727 aagaaaatatttcatcaccattaaataaatcaaagattgaattaccaattataattgcaa 668
Query: 948 caggattaacaggattaatgcaattacatattcattcactttgttctgcaattggtggaa 1007 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 667 caggattaacaggattaatgcaattacatattcattcactttgttctgcaattggtggaa 608
Query: 1008 aacttgtaactgaatttaatgatcaagttacacatgtcgtttgtagtacactcgatggtg 1067 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 607 aacttgtaactgaatttaatgatcaagttacacatgtcgtttgtagtacactcgatggtg 548
Query: 1068 atggaagtaaagagaatttagctaaaagaacaattaaatatcaaatgggaattggtagag 1127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 547 atggaagtaaagagaatttagctaaaagaacaattaaatatcaaatgggaattggtagag 488
Query: 1128 gtggactatggttagtttcattcgattggattcttgaatctttgaatgaaaatcaatggg 1187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 487 gtggactatggttagtttcattcgattggattcttgaatctttgaatgaaaatcaatggg 428
Query: 1188 taaatgaaagtgaattcgaaattcaaggtgactcaattgggttaggttcaccattgaaat 1247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 427 taaatgaaagtgaattcgaaattcaaggtgactcaattgggttaggttcaccattgaaat 368
Query: 1248 caagacaacaactatttgaaactaaaagattattttatggtcaaagtttttatttagctg 1307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 367 caagacaacaactatttgaaactaaaagattattttatggtcaaagtttttatttagctg 308
Query: 1308 gtgaatttcagtcaccatcccgtcaagagattacctctgtaattaaatcatcaggtggta 1367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 307 gtgaatttcagtcaccatcccgtcaagagattacctctgtaattaaatcatcaggtggta 248
Query: 1368 tagttttagatcagttacctccaaaacctcagaatttaaatgaaatgcttcaatcaactt 1427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 247 tagttttagatcagttacctccaaaacctcagaatttaaatgaaatgcttcaatcaactt 188
Query: 1428 gtactgtaatttgtcatccacttttatcctcaattgatcaatcattaattcaaacaattt 1487 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 187 gtactgtaatttgtcatccacttttatcctcaattgatcaatcattaattcaaacaattt 128
Query: 1488 atctttcaactaaacatattccaatttcttttagttggatctttgattcaatttcaaagt 1547 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 127 atctttcaactaaacatattccaatttcttttagttggatctttgattcaatttcaaagt 68
Query: 1548 ataaattattaccaaaagataattattatcaatatccaaattcaaataatagtaaattca 1607 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 67 ataaattattaccaaaagataattattatcaatatccaaattcaaataatagtaaattca 8
Query: 1608 aaatta 1613 |||||| Sbjct: 7 aaatta 2
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 1,607,648,275 Number of extensions: 105129680 Number of successful extensions: 11117030 Number of sequences better than 10.0: 362 Length of query: 1613 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 1589 Effective length of database: 97,308,875,965 Effective search space: 154623803908385 Effective search space used: 154623803908385 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 6.29 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
1 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
1 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |