Contig-U11290-1
Contig ID Contig-U11290-1
Contig update 2002.12.18
Contig sequence
>Contig-U11290-1 (Contig-U11290-1Q) /CSM_Contig/Contig-U11290-1Q.Seq.d
TAATAGTAATGAAAAAGATATTAGTGATAAAAATAGCAAAGATGATAATG
ATGATGATGGTGATAAAATAACTAAAAAAACAAAAGACTGATGATAATAT
TGAAAATAATGGAAAACAGCAAATGGCAGTTGATGACGAATCCACTCAAA
GTATACAACCAGTTTTAATTGATGATGAATCAACTCAAAAAATTATTGAG
CAAAAAGATGAAAATGAAAAAGTAGAAAAAGAAAAAGAAAAAGCAGAAAA
AGAAGATGACGAGGCAACACAAGCTATGGCAGATAATTTAAATAATGAAT
ATGATAATTCACCAACTATACCAATGACAACAATGGAATGTGTTAGAGCA
AATTTAAATACTGGTTTTAGAGATAATGACCAAGATGAAGATGAAAATGA
AAATGAAAATGAAAATAAAAAAGTTACTTCAAAAAATAATAGTGAATCAA
CTTTACAAAATTCAAATTCAGATTTACCAATAATTTATTCATCACCAAAT
TATCAACAAAATAAATTTCAAACTCCTAAAACACCAGCACCTTCACCATC
ATCAACACAAGATCATTTCAATAGACCAACAATTGAACAACCATCTTCAC
CTTATAAATCACCTTCTAAATCACAACAACAAGCTTCACAAAAATCATCT
CAACAACAACAATCACAACAACAATCACCATCCAAATCTCAAGAACAACA
AGCCTCACAAAAATTATNACAACAACATCAATCACCATCCCAAGTTCTCA
GGAACAACAAACTTCACAANAAATCATNACAACAACAGCAATCACAACAA
CAATCAC----------NNNNNNNNNNATCACACCAGCAACCATCAATCA
TCATCACAACAACAACAACAAATTATAATCGAAAAAGAAGAAAATATTTC
ATCACCATTAAATAAATCAAAGATTGAATTACCAATTATAATTGCAACAG
GATTAACAGGATTAATGCAATTACATATTCATTCACTTTGTTCTGCAATT
GGTGGAAAACTTGTAACTGAATTTAATGATCAAGTTACACATGTCGTTTG
TAGTACACTCGATGGTGATGGAAGTAAAGAGAATTTAGCTAAAAGAACAA
TTAAATATCAAATGGGAATTGGTAGAGGTGGACTATGGTTAGTTTCATTC
GATTGGATTCTTGAATCTTTGAATGAAAATCAATGGGTAAATGAAAGTGA
ATTCGAAATTCAAGGTGACTCAATTGGGTTAGGTTCACCATTGAAATCAA
GACAACAACTATTTGAAACTAAAAGATTATTTTATGGTCAAAGTTTTTAT
TTAGCTGGTGAATTTCAGTCACCATCCCGTCAAGAGATTACCTCTGTAAT
TAAATCATCAGGTGGTATAGTTTTAGATCAGTTACCTCCAAAACCTCAGA
ATTTAAATGAAATGCTTCAATCAACTTGTACTGTAATTTGTCATCCACTT
TTATCCTCAATTGATCAATCATTAATTCAAACAATTTATCTTTCAACTAA
ACATATTCCAATTTCTTTTAGTTGGATCTTTGATTCAATTTCAAAGTATA
AATTATTACCAAAAGATAATTATTATCAATATCCAAATTCAAATAATAGT
AAATTCAAAATTA

Gap gap included
Contig length 1603
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 2712085
End point 2713679
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 3
Link to clone list U11290
List of clone(s)

est1=AHE115F,1,571
est2=SFC831F,314,808
est3=AHE115Z,809,1595
Translated Amino Acid sequence
ivmkkilvikiakmimmmmvik*LKKQKTDDNIENNGKQQMAVDDESTQSIQPVLIDDES
TQKIIEQKDENEKVEKEKEKAEKEDDEATQAMADNLNNEYDNSPTIPMTTMECVRANLNT
GFRDNDQDEDENENENENKKVTSKNNSESTLQNSNSDLPIIYSSPNYQQNKFQTPKTPAP
SPSSTQDHFNRPTIEQPSSPYKSPSKSQQQASQKSSQQQQSQQQSPSKSQEQQASQKLXQ
QHQSPSQVLRNNKLHXKSXQQQQSQQQS---

---XXXXHTSNHQSSSQQQQQIIIEKEENISSPLNKSKIELPIIIATGLTGLMQLHIHSL
CSAIGGKLVTEFNDQVTHVVCSTLDGDGSKENLAKRTIKYQMGIGRGGLWLVSFDWILES
LNENQWVNESEFEIQGDSIGLGSPLKSRQQLFETKRLFYGQSFYLAGEFQSPSRQEITSV
IKSSGGIVLDQLPPKPQNLNEMLQSTCTVICHPLLSSIDQSLIQTIYLSTKHIPISFSWI
FDSISKYKLLPKDNYYQYPNSNNSKFKI


Translated Amino Acid sequence (All Frames)
Frame A:
****kry***k*qr*****w**nn*knkrlmiilkimenskwqlmtnplkvynqf*lmmn
qlkkllskkmkmkk*kkkkkkqkkkmtrqhklwqii*imnmiihqlyq*qqwnvleqi*i
lvleimtkmkmkmkmkmkikkllqkiivnqlykiqiqiyq*fihhqiinkinfkllkhqh
lhhhqhkiisidqqlnnhlhlinhllnhnnklhknhlnnnnhnnnhhpnlknnkphknyx
nninhhpkfsgttnftxnhxnnsnhnnnh---

---XXXXHTSNHQSSSQQQQQIIIEKEENISSPLNKSKIELPIIIATGLTGLMQLHIHSL
CSAIGGKLVTEFNDQVTHVVCSTLDGDGSKENLAKRTIKYQMGIGRGGLWLVSFDWILES
LNENQWVNESEFEIQGDSIGLGSPLKSRQQLFETKRLFYGQSFYLAGEFQSPSRQEITSV
IKSSGGIVLDQLPPKPQNLNEMLQSTCTVICHPLLSSIDQSLIQTIYLSTKHIPISFSWI
FDSISKYKLLPKDNYYQYPNSNNSKFKI

Frame B:
nsnekdisdknskddndddgdkitkktkd***y*k*wktangs**rihskyttsfn***i
nskny*akr*k*ksrkrkrksrkrr*rgntsygr*fk**i**ftnytndnngmc*skfky
wf*r**pr*r*k*k*k*k*ksyfkk***inftkfkfrftnnlfitklstk*isns*ntst
ftiintrsfq*tnn*ttiftl*itf*itttsftkiistttitttitiqisrttsltkixt
ttsitipssqeqqtsqxixtttaittti---

---xxxitpatinhhhnnnnkl*skkkkifhhh*inqrlnyql*lqqd*qd*cnyifihf
vlqlvenl*lnlmiklhmsfvvhsmvmevkri*lkeqlnikwelvevdyg*fhsigflnl
*mking*mkvnskfkvtqlg*vhh*nqdnnylklkdyfmvkvfi*lvnfshhpvkrlpl*
lnhqvv*f*isylqnlri*mkcfnqlvl*fvihfypqlinh*fkqfifqlnifqfllvgs
liqfqsinyyqkiiiiniqiqiivnskl

Frame C:
ivmkkilvikiakmimmmmvik*LKKQKTDDNIENNGKQQMAVDDESTQSIQPVLIDDES
TQKIIEQKDENEKVEKEKEKAEKEDDEATQAMADNLNNEYDNSPTIPMTTMECVRANLNT
GFRDNDQDEDENENENENKKVTSKNNSESTLQNSNSDLPIIYSSPNYQQNKFQTPKTPAP
SPSSTQDHFNRPTIEQPSSPYKSPSKSQQQASQKSSQQQQSQQQSPSKSQEQQASQKLXQ
QHQSPSQVLRNNKLHXKSXQQQQSQQQS---

---xxxshqqpsiiitttttnynrkrrkyfitik*ikd*itnyncnrinrinaitysftl
fcnwwktcn*i**ssytcrl*ytrw*wk*refs*knn*isngnw*rwtmvsfirlds*if
e*ksmgk*k*irnsr*lnwvrftieikttti*n*kiilwskflfsw*isvtipsrdylcn
*iirwysfrsvtsktsefk*nasinlycnlsstfiln*siinsnnlsfn*tysnff*ldl
*fnfkv*iitkr*llsiskfk***iqn

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U11290-1 (Contig-U11290-1Q)
/CSM_Contig/Contig-U11290-1Q.Seq.d
(1613 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U11290-1 (Contig-U11290-1Q) /CSM_Contig/Conti... 1558 0.0
Contig-U12480-1 (Contig-U12480-1Q) /CSM_Contig/Conti... 50 8e-06
Contig-U10752-1 (Contig-U10752-1Q) /CSM_Contig/Conti... 50 8e-06
Contig-U02626-1 (Contig-U02626-1Q) /CSM_Contig/Conti... 48 3e-05
Contig-U11594-1 (Contig-U11594-1Q) /CSM_Contig/Conti... 46 1e-04
Contig-U10906-1 (Contig-U10906-1Q) /CSM_Contig/Conti... 46 1e-04
Contig-U11767-1 (Contig-U11767-1Q) /CSM_Contig/Conti... 44 5e-04
Contig-U11000-1 (Contig-U11000-1Q) /CSM_Contig/Conti... 44 5e-04
Contig-U10850-1 (Contig-U10850-1Q) /CSM_Contig/Conti... 44 5e-04
Contig-U05944-1 (Contig-U05944-1Q) /CSM_Contig/Conti... 44 5e-04

>Contig-U11290-1 (Contig-U11290-1Q) /CSM_Contig/Contig-U11290-1Q.Seq.d
Length = 1613

Score = 1558 bits (786), Expect = 0.0
Identities = 786/786 (100%)
Strand = Plus / Plus


Query: 828 atcacaccagcaaccatcaatcatcatcacaacaacaacaacaaattataatcgaaaaag 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 atcacaccagcaaccatcaatcatcatcacaacaacaacaacaaattataatcgaaaaag 887


Query: 888 aagaaaatatttcatcaccattaaataaatcaaagattgaattaccaattataattgcaa 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888 aagaaaatatttcatcaccattaaataaatcaaagattgaattaccaattataattgcaa 947


Query: 948 caggattaacaggattaatgcaattacatattcattcactttgttctgcaattggtggaa 1007
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 948 caggattaacaggattaatgcaattacatattcattcactttgttctgcaattggtggaa 1007


Query: 1008 aacttgtaactgaatttaatgatcaagttacacatgtcgtttgtagtacactcgatggtg 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1008 aacttgtaactgaatttaatgatcaagttacacatgtcgtttgtagtacactcgatggtg 1067


Query: 1068 atggaagtaaagagaatttagctaaaagaacaattaaatatcaaatgggaattggtagag 1127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1068 atggaagtaaagagaatttagctaaaagaacaattaaatatcaaatgggaattggtagag 1127


Query: 1128 gtggactatggttagtttcattcgattggattcttgaatctttgaatgaaaatcaatggg 1187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1128 gtggactatggttagtttcattcgattggattcttgaatctttgaatgaaaatcaatggg 1187


Query: 1188 taaatgaaagtgaattcgaaattcaaggtgactcaattgggttaggttcaccattgaaat 1247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1188 taaatgaaagtgaattcgaaattcaaggtgactcaattgggttaggttcaccattgaaat 1247


Query: 1248 caagacaacaactatttgaaactaaaagattattttatggtcaaagtttttatttagctg 1307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1248 caagacaacaactatttgaaactaaaagattattttatggtcaaagtttttatttagctg 1307


Query: 1308 gtgaatttcagtcaccatcccgtcaagagattacctctgtaattaaatcatcaggtggta 1367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1308 gtgaatttcagtcaccatcccgtcaagagattacctctgtaattaaatcatcaggtggta 1367


Query: 1368 tagttttagatcagttacctccaaaacctcagaatttaaatgaaatgcttcaatcaactt 1427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1368 tagttttagatcagttacctccaaaacctcagaatttaaatgaaatgcttcaatcaactt 1427


Query: 1428 gtactgtaatttgtcatccacttttatcctcaattgatcaatcattaattcaaacaattt 1487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1428 gtactgtaatttgtcatccacttttatcctcaattgatcaatcattaattcaaacaattt 1487


Query: 1488 atctttcaactaaacatattccaatttcttttagttggatctttgattcaatttcaaagt 1547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1488 atctttcaactaaacatattccaatttcttttagttggatctttgattcaatttcaaagt 1547


Query: 1548 ataaattattaccaaaagataattattatcaatatccaaattcaaataatagtaaattca 1607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1548 ataaattattaccaaaagataattattatcaatatccaaattcaaataatagtaaattca 1607


Query: 1608 aaatta 1613
||||||
Sbjct: 1608 aaatta 1613


Score = 371 bits (187), Expect = e-102
Identities = 187/187 (100%)
Strand = Plus / Plus


Query: 437 taatagtgaatcaactttacaaaattcaaattcagatttaccaataatttattcatcacc 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 taatagtgaatcaactttacaaaattcaaattcagatttaccaataatttattcatcacc 496


Query: 497 aaattatcaacaaaataaatttcaaactcctaaaacaccagcaccttcaccatcatcaac 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aaattatcaacaaaataaatttcaaactcctaaaacaccagcaccttcaccatcatcaac 556


Query: 557 acaagatcatttcaatagaccaacaattgaacaaccatcttcaccttataaatcaccttc 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 acaagatcatttcaatagaccaacaattgaacaaccatcttcaccttataaatcaccttc 616


Query: 617 taaatca 623
|||||||
Sbjct: 617 taaatca 623


Score = 327 bits (165), Expect = 2e-89
Identities = 179/186 (96%)
Strand = Plus / Plus


Query: 1 taatagtaatgaaaaagatattagtgataaaaatagcaaagatgataatgatgatgatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 taatagtaatgaaaaagatattagtgataaaaatagcaaagatgataatgatgatgatgg 60


Query: 61 tgataaaataactnnnnnnncaaaagactgatgataatattgaaaataatggaaaacagc 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgataaaataactaaaaaaacaaaagactgatgataatattgaaaataatggaaaacagc 120


Query: 121 aaatggcagttgatgacgaatccactcaaagtatacaaccagttttaattgatgatgaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaatggcagttgatgacgaatccactcaaagtatacaaccagttttaattgatgatgaat 180


Query: 181 caactc 186
||||||
Sbjct: 181 caactc 186


Score = 270 bits (136), Expect = 4e-72
Identities = 136/136 (100%)
Strand = Plus / Plus


Query: 255 gatgacgaggcaacacaagctatggcagataatttaaataatgaatatgataattcacca 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 gatgacgaggcaacacaagctatggcagataatttaaataatgaatatgataattcacca 314


Query: 315 actataccaatgacaacaatggaatgtgttagagcaaatttaaatactggttttagagat 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 actataccaatgacaacaatggaatgtgttagagcaaatttaaatactggttttagagat 374


Query: 375 aatgaccaagatgaag 390
||||||||||||||||
Sbjct: 375 aatgaccaagatgaag 390


Score = 147 bits (74), Expect = 4e-35
Identities = 77/77 (100%)
Strand = Plus / Plus


Query: 675 tcaccatccaaatctcaagaacaacaagcctcacaaaaattatnacaacaacatcaatca 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 tcaccatccaaatctcaagaacaacaagcctcacaaaaattatnacaacaacatcaatca 734


Query: 735 ccatcccaagttctcag 751
|||||||||||||||||
Sbjct: 735 ccatcccaagttctcag 751


Score = 30.2 bits (15), Expect = 7.1
Identities = 18/19 (94%)
Strand = Plus / Plus


Query: 722 acaacatcaatcaccatcc 740
|||||| ||||||||||||
Sbjct: 665 acaacaacaatcaccatcc 683


Score = 30.2 bits (15), Expect = 7.1
Identities = 18/19 (94%)
Strand = Plus / Plus


Query: 850 atcatcacaacaacaacaa 868
|||||| ||||||||||||
Sbjct: 644 atcatctcaacaacaacaa 662


>Contig-U12480-1 (Contig-U12480-1Q) /CSM_Contig/Contig-U12480-1Q.Seq.d
Length = 1160

Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus


Query: 847 atcatcatcacaacaacaacaacaa 871
|||||||||||||||||||||||||
Sbjct: 1078 atcatcatcacaacaacaacaacaa 1102


Score = 34.2 bits (17), Expect = 0.45
Identities = 23/25 (92%)
Strand = Plus / Plus


Query: 847 atcatcatcacaacaacaacaacaa 871
|||||||||| |||||||||||||
Sbjct: 1075 atcatcatcatcacaacaacaacaa 1099


>Contig-U10752-1 (Contig-U10752-1Q) /CSM_Contig/Contig-U10752-1Q.Seq.d
Length = 1223

Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus


Query: 847 atcatcatcacaacaacaacaacaa 871
|||||||||||||||||||||||||
Sbjct: 778 atcatcatcacaacaacaacaacaa 802


Score = 38.2 bits (19), Expect = 0.029
Identities = 25/27 (92%)
Strand = Plus / Plus


Query: 847 atcatcatcacaacaacaacaacaaat 873
||||||| ||||||||||||||||||
Sbjct: 781 atcatcacaacaacaacaacaacaaat 807


Score = 30.2 bits (15), Expect = 7.1
Identities = 21/23 (91%)
Strand = Plus / Plus


Query: 849 catcatcacaacaacaacaacaa 871
|||||||| |||||||||||||
Sbjct: 777 catcatcatcacaacaacaacaa 799


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 40,060
Number of Sequences: 6905
Number of extensions: 40060
Number of successful extensions: 10771
Number of sequences better than 10.0: 1356
length of query: 1613
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1597
effective length of database: 5,564,391
effective search space: 8886332427
effective search space used: 8886332427
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.23
Homology vs DNA
Query= Contig-U11290-1 (Contig-U11290-1Q) /CSM_Contig/Contig-U11290-1Q.Seq.d
(1613 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ350226) Dictyostelium discoideum cDNA clone:dda39m03, 3' ... 1558 0.0 1
(BJ332452) Dictyostelium discoideum cDNA clone:dda39m03, 5' ... 272 e-174 3
(BJ388610) Dictyostelium discoideum cDNA clone:dds6n08, 5' e... 297 e-129 3
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 40 6e-04 12
(FE379669) CBNS4019.fwd CBNS_Daphnia_pulex_Chosen_One_Librar... 50 0.014 2
(FE379668) CBNS4019.rev CBNS_Daphnia_pulex_Chosen_One_Librar... 50 0.014 2
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 36 0.016 11
(FE421340) CBTX2515.rev CBTX_Daphnia_pulex_Chosen_One_Librar... 50 0.024 2
(FE421341) CBTX2515.fwd CBTX_Daphnia_pulex_Chosen_One_Librar... 50 0.027 2
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 38 0.032 6
(CU013520) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 0.033 6
(DE214811) Trifolium pratense DNA, clone:RCG03375. 48 0.040 2
(CU467891) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 0.042 2
(CU468492) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 0.042 2
(AC114261) Dictyostelium discoideum chromosome 2 map 126059-... 38 0.046 6
(CT450264) Sus scrofa genomic clone CH242-433H5, genomic sur... 36 0.053 2
(EY376153) CAXA1602.fwd CAXA Helobdella robusta Subtracted L... 50 0.099 2
(EY377240) CAXA16609.fwd CAXA Helobdella robusta Subtracted ... 50 0.099 2
(EY372286) CAXA13930.fwd CAXA Helobdella robusta Subtracted ... 50 0.10 2
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 38 0.10 11
(EY385459) CAXA5701.fwd CAXA Helobdella robusta Subtracted L... 50 0.11 2
(EY345235) CAWZ13745.fwd CAWZ Helobdella robusta Primary Lat... 50 0.11 2
(EY381939) CAXA3767.fwd CAXA Helobdella robusta Subtracted L... 50 0.11 2
(EY366163) CAXA10581.fwd CAXA Helobdella robusta Subtracted ... 50 0.11 2
(EY366068) CAXA10535.fwd CAXA Helobdella robusta Subtracted ... 50 0.12 2
(X03240) Drosophila yakuba complete mitochondrial sequence. 38 0.13 5
(AC152905) Taeniopygia guttata clone TG_Ba-359L6, WORKING DR... 40 0.14 9
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-... 40 0.16 2
(AC116551) Dictyostelium discoideum chromosome 2 map complem... 36 0.16 10
(AE014839) Plasmodium falciparum 3D7 chromosome 11 section 4... 46 0.18 10
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 36 0.20 12
(EC822129) SME00006431 esmbsro2 Sawyeria marylandensis cDNA,... 36 0.20 2
(BX511094) Zebrafish DNA sequence from clone CH211-137G12 in... 50 0.26 1
(AC161931) Mus musculus chromosome 3, clone RP23-290N20, com... 50 0.26 1
(AC158669) Mus musculus 6 BAC RP23-66K6 (Roswell Park Cancer... 50 0.26 1
(AC153639) Mus musculus 6 BAC RP23-124H2 (Roswell Park Cance... 50 0.26 1
(AC135860) Mus musculus BAC clone RP24-441J10 from chromosom... 50 0.26 1
(AC123823) Mus musculus BAC clone RP24-63C11 from chromosome... 50 0.26 1
(AC116960) Dictyostelium discoideum chromosome 2 map complem... 50 0.26 1
(AC135363) Mus musculus chromosome UNK clone RP23-341B24, WO... 50 0.26 1
(AC131429) Rattus norvegicus clone CH230-193L4, *** SEQUENCI... 50 0.26 1
(AC120773) Rattus norvegicus clone CH230-65J6, WORKING DRAFT... 50 0.26 1
(AC117142) Rattus norvegicus clone CH230-392D15, *** SEQUENC... 50 0.26 1
(AC095104) Rattus norvegicus clone CH230-7J7, *** SEQUENCING... 50 0.26 1
(AC165830) Bos taurus clone CH240-130F24, WORKING DRAFT SEQU... 50 0.26 1
(AK086573) Mus musculus 15 days embryo head cDNA, RIKEN full... 50 0.26 1
(AK082001) Mus musculus 16 days embryo head cDNA, RIKEN full... 50 0.26 1
(EJ574875) 1092960089245 Global-Ocean-Sampling_GS-29-01-01-1... 50 0.26 1
(EH010874) USDA-FP_183929 Lysiphlebus testaceipes adult whol... 50 0.26 1
(EH010405) USDA-FP_183507 Lysiphlebus testaceipes adult whol... 50 0.26 1
(DB885387) Populus nigra mRNA, clone: PnFL2-059_O20, 5'end. 50 0.26 1
(CK106324) UB17CPA11.5pR Populus active cambium cDNA library... 50 0.26 1
(BJ441100) Dictyostelium discoideum cDNA clone:ddv45m16, 3' ... 50 0.26 1
(BJ340959) Dictyostelium discoideum cDNA clone:dda4f14, 3' e... 50 0.26 1
(BE656417) UI-M-BH0-ajx-c-10-0-UI.r1 NIH_BMAP_M_S1 Mus muscu... 50 0.26 1
(EY384325) CAXA5086.fwd CAXA Helobdella robusta Subtracted L... 50 0.26 1
(EY366963) CAXA11006.fwd CAXA Helobdella robusta Subtracted ... 50 0.26 1
(EY297215) CAWX13240.fwd CAWX Helobdella robusta Primary Ear... 50 0.26 1
(AY700082) Plasmodium falciparum DEAD box DNA helicase gene,... 38 0.28 3
(AC220824) Bos taurus clone CH240-344H24, WORKING DRAFT SEQU... 46 0.29 2
(DE227600) Trifolium pratense DNA, clone:RCG20284. 48 0.30 2
(EY335465) CAWY7040.fwd CAWY Helobdella robusta Subtracted E... 44 0.37 2
(EB564855) AGENCOURT_51105488 D. virilis EST Drosophila viri... 46 0.38 2
(EB558287) AGENCOURT_51898531 D. virilis EST Drosophila viri... 46 0.41 2
(EY301451) CAWX15583.fwd CAWX Helobdella robusta Primary Ear... 44 0.42 2
(AF045453) Dictyostelium discoideum protein kinase YakA (yak... 40 0.50 3
(AL049181) Plasmodium falciparum DNA *** SEQUENCING IN PROGR... 36 0.51 10
(AF310887) Dictyostelium discoideum RacB (racB) gene, partia... 38 0.55 3
(AC104500) Trypanosoma cruzi strain CL Brener chromosome 3 c... 44 0.78 2
(BJ324275) Dictyostelium discoideum cDNA clone:dda5f17, 5' e... 46 0.83 2
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ... 38 0.94 19
(EA130308) Sequence 7 from patent US 7217856. 46 0.98 2
(BX322575) Zebrafish DNA sequence from clone CH211-283E2 in ... 48 1.0 1
(AY303234) Sphoeroides nephelus HoxB6b (Hoxb6b) and Hoxb5b (... 48 1.0 1
(AC150162) Solanum demissum chromosome 5 clone PGEC160O2, co... 48 1.0 1
(AC146506) Solanum demissum chromosome 5 clone PGEC989P08, c... 48 1.0 1
(AL158163) Human DNA sequence from clone RP11-348N5 on chrom... 48 1.0 1
(CR925793) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 48 1.0 1
(AC179795) Strongylocentrotus purpuratus clone R3-1014I4, WO... 48 1.0 1
(AC166888) Sorex araneus clone SA_Ba-486M6, WORKING DRAFT SE... 48 1.0 1
(ET778190) CHO_OF575xd07r1.ab1 CHO_OF Nicotiana tabacum geno... 48 1.0 1
(ER810675) PPTCC56TFB Solanum tuberosum RHPOTKEY BAC ends So... 48 1.0 1
(ER450765) 1092963848783 Global-Ocean-Sampling_GS-35-01-01-1... 48 1.0 1
(ED268579) AUAC-aae58f03.g1 Ascaris suum whole genome shotgu... 48 1.0 1
(DE986629) Macropus eugenii DNA, BAC clone: MEB1-197F23_F, 5... 48 1.0 1
(EL532657) EST_omor_eva_11810 omoreva mixed_tissue Osmerus m... 48 1.0 1
(EH015909) USDA-FP_188463 Lysiphlebus testaceipes adult whol... 48 1.0 1
(DY306525) KN0AAL2BE11FM1 KCl-Salt1 Citrus reshni cDNA 5', m... 48 1.0 1
(DR910319) USDA-FP_18447 Citrus sinensis phloem Citrus sinen... 48 1.0 1
(DN623638) UCRCA01_03N07_r Bark of Madame Vinous Sweet Orang... 48 1.0 1
(DN623637) UCRCA01_03N07_f Bark of Madame Vinous Sweet Orang... 48 1.0 1
(BJ340097) Dictyostelium discoideum cDNA clone:dda11j17, 3' ... 48 1.0 1
(FE245820) CAPG9087.rev CAPG Naegleria gruberi amoeba stage ... 48 1.0 1
(FC689008) CAXX20407.fwd CAXX Lottia gigantea from male gona... 48 1.0 1
(EY720779) CS00-C3-703-014-B08-CT.F Sweet orange fruit, deve... 48 1.0 1
(EX449153) Volcani_8_04_E4 Volcani08 Citrus reticulata x Cit... 48 1.0 1
(EV466136) MDEST1182 Hessian fly salivary gland cDNA Library... 48 1.0 1
(BJ403585) Dictyostelium discoideum cDNA clone:dds25i16, 3' ... 36 1.0 3
(BJ333964) Dictyostelium discoideum cDNA clone:dda44k18, 5' ... 46 1.1 2
(AC219486) Bos taurus clone CH240-332F1, WORKING DRAFT SEQUE... 46 1.1 2

>(BJ350226) Dictyostelium discoideum cDNA clone:dda39m03, 3' end,
single read.
Length = 787

Score = 1558 bits (786), Expect = 0.0
Identities = 786/786 (100%)
Strand = Plus / Minus


Query: 828 atcacaccagcaaccatcaatcatcatcacaacaacaacaacaaattataatcgaaaaag 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 atcacaccagcaaccatcaatcatcatcacaacaacaacaacaaattataatcgaaaaag 728


Query: 888 aagaaaatatttcatcaccattaaataaatcaaagattgaattaccaattataattgcaa 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 aagaaaatatttcatcaccattaaataaatcaaagattgaattaccaattataattgcaa 668


Query: 948 caggattaacaggattaatgcaattacatattcattcactttgttctgcaattggtggaa 1007
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 caggattaacaggattaatgcaattacatattcattcactttgttctgcaattggtggaa 608


Query: 1008 aacttgtaactgaatttaatgatcaagttacacatgtcgtttgtagtacactcgatggtg 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 aacttgtaactgaatttaatgatcaagttacacatgtcgtttgtagtacactcgatggtg 548


Query: 1068 atggaagtaaagagaatttagctaaaagaacaattaaatatcaaatgggaattggtagag 1127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 atggaagtaaagagaatttagctaaaagaacaattaaatatcaaatgggaattggtagag 488


Query: 1128 gtggactatggttagtttcattcgattggattcttgaatctttgaatgaaaatcaatggg 1187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 gtggactatggttagtttcattcgattggattcttgaatctttgaatgaaaatcaatggg 428


Query: 1188 taaatgaaagtgaattcgaaattcaaggtgactcaattgggttaggttcaccattgaaat 1247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 taaatgaaagtgaattcgaaattcaaggtgactcaattgggttaggttcaccattgaaat 368


Query: 1248 caagacaacaactatttgaaactaaaagattattttatggtcaaagtttttatttagctg 1307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 caagacaacaactatttgaaactaaaagattattttatggtcaaagtttttatttagctg 308


Query: 1308 gtgaatttcagtcaccatcccgtcaagagattacctctgtaattaaatcatcaggtggta 1367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gtgaatttcagtcaccatcccgtcaagagattacctctgtaattaaatcatcaggtggta 248


Query: 1368 tagttttagatcagttacctccaaaacctcagaatttaaatgaaatgcttcaatcaactt 1427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tagttttagatcagttacctccaaaacctcagaatttaaatgaaatgcttcaatcaactt 188


Query: 1428 gtactgtaatttgtcatccacttttatcctcaattgatcaatcattaattcaaacaattt 1487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 gtactgtaatttgtcatccacttttatcctcaattgatcaatcattaattcaaacaattt 128


Query: 1488 atctttcaactaaacatattccaatttcttttagttggatctttgattcaatttcaaagt 1547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 atctttcaactaaacatattccaatttcttttagttggatctttgattcaatttcaaagt 68


Query: 1548 ataaattattaccaaaagataattattatcaatatccaaattcaaataatagtaaattca 1607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 ataaattattaccaaaagataattattatcaatatccaaattcaaataatagtaaattca 8


Query: 1608 aaatta 1613
||||||
Sbjct: 7 aaatta 2

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,607,648,275
Number of extensions: 105129680
Number of successful extensions: 11117030
Number of sequences better than 10.0: 362
Length of query: 1613
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1589
Effective length of database: 97,308,875,965
Effective search space: 154623803908385
Effective search space used: 154623803908385
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.29
Homology vs Protein
Query= Contig-U11290-1 (Contig-U11290-1Q) /CSM_Contig/Contig-U11290-1Q.Seq.d
(1613 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

U32446_1(U32446|pid:none) Mus musculus putative breast/ovarian c... 81 1e-13
U36475_1(U36475|pid:none) Mus musculus breast and ovarian cancer... 81 1e-13
U68174_1(U68174|pid:none) Mus musculus breast/ovarian cancer sus... 81 1e-13
BC068303_1(BC068303|pid:none) Mus musculus breast cancer 1, mRNA... 81 1e-13
(P48754) RecName: Full=Breast cancer type 1 susceptibility prote... 79 4e-13
AY994160_1(AY994160|pid:none) Monodelphis domestica BRCA1-like p... 78 1e-12
AJ720093_1(AJ720093|pid:none) Gallus gallus mRNA for hypothetica... 78 1e-12
AY428536_1(AY428536|pid:none) Tetraodon nigroviridis breast canc... 77 2e-12
CR753890_2(CR753890|pid:none) Zebrafish DNA sequence from clone ... 75 5e-12
EU817406_1(EU817406|pid:none) Arabidopsis thaliana BARD1 (AT1G04... 75 9e-12
BC159159_1(BC159159|pid:none) Xenopus tropicalis breast cancer 1... 74 2e-11
(Q8RXD4) RecName: Full=Protein BREAST CANCER SUSCEPTIBILITY 1 ho... 73 3e-11
AL021960_1(AL021960|pid:none) Arabidopsis thaliana DNA chromosom... 73 3e-11
(Q9QZH2) RecName: Full=BRCA1-associated RING domain protein 1; ... 72 6e-11
(O70445) RecName: Full=BRCA1-associated RING domain protein 1; ... 71 1e-10
AF355273_1(AF355273|pid:none) Gallus gallus breast and ovarian c... 71 1e-10
CR753890_3(CR753890|pid:none) Zebrafish DNA sequence from clone ... 71 1e-10
AK223409_1(AK223409|pid:none) Homo sapiens mRNA for BRCA1 associ... 70 2e-10
(Q95153) RecName: Full=Breast cancer type 1 susceptibility prote... 70 2e-10
AF479648_1(AF479648|pid:none) Bos taurus breast and ovarian canc... 70 2e-10
AF038042_1(AF038042|pid:none) Homo sapiens BRCA1-associated RING... 70 3e-10
AK314260_1(AK314260|pid:none) Homo sapiens cDNA, FLJ95007, highl... 70 3e-10
AX781547_1(AX781547|pid:none) Sequence 1 from Patent EP1321474. ... 70 3e-10
AB271921_1(AB271921|pid:none) Sus scrofa BRCA1 mRNA for breast c... 69 5e-10
(Q6J6I8) RecName: Full=Breast cancer type 1 susceptibility prote... 68 8e-10
AF207822_1(AF207822|pid:none) Pan troglodytes BRCA1 (BRCA1) mRNA... 68 8e-10
BC170141_1(BC170141|pid:none) Xenopus laevis breast and ovarian ... 68 1e-09
A85240(A85240) hypothetical protein AT4g21070 [imported] - Arabi... 68 1e-09
AF416868_1(AF416868|pid:none) Xenopus laevis breast and ovarian ... 68 1e-09
(Q6J6I9) RecName: Full=Breast cancer type 1 susceptibility prote... 67 1e-09
AF005068_1(AF005068|pid:none) Homo sapiens breast and ovarian ca... 67 1e-09
U68041_1(U68041|pid:none) Human breast and ovarian cancer suscep... 67 1e-09
DQ190453_3(DQ190453|pid:none) Homo sapiens clone mck55_A neighbo... 67 1e-09
AY888184_1(AY888184|pid:none) Synthetic construct Homo sapiens c... 67 1e-09
U64805_1(U64805|pid:none) Homo sapiens Brca1-delta11b (Brca1) mR... 67 1e-09
AK293762_1(AK293762|pid:none) Homo sapiens cDNA FLJ58524 complet... 67 1e-09
AY890755_1(AY890755|pid:none) Synthetic construct Homo sapiens c... 67 1e-09
BC170051_1(BC170051|pid:none) Xenopus laevis BRCA1-associated RI... 66 4e-09
AC130604_3(AC130604|pid:none) Oryza sativa (japonica cultivar-gr... 65 9e-09
AY751490_1(AY751490|pid:none) Homo sapiens breast and ovarian ca... 64 1e-08
(Q7TT79) RecName: Full=Microcephalin; &AY070216_1(AY070216|pid:... 57 2e-06
EU957485_1(EU957485|pid:none) Zea mays clone 1594336 ATBRCA1 mRN... 53 4e-05
(Q5IFK1) RecName: Full=Microcephalin; &AY742816_1(AY742816|pid:... 52 5e-05
DQ788861_1(DQ788861|pid:none) Gallus gallus microcephalin (MCPH1... 52 6e-05
AK103203_1(AK103203|pid:none) Oryza sativa Japonica Group cDNA c... 52 8e-05
BT061929_1(BT061929|pid:none) Zea mays full-length cDNA clone ZM... 51 1e-04
AY570945_1(AY570945|pid:none) Lemur catta microcephalin mRNA, pa... 50 2e-04
BC142504_1(BC142504|pid:none) Bos taurus microcephalin 1, mRNA (... 50 2e-04
BC154381_1(BC154381|pid:none) Bos taurus microcephalin 1, mRNA (... 50 2e-04
BC115116_1(BC115116|pid:none) Danio rerio zgc:136403, mRNA (cDNA... 49 5e-04
AY570944_1(AY570944|pid:none) Canis familiaris microcephalin mRN... 49 7e-04
AC135595_1(AC135595|pid:none) Oryza sativa chromosome 3 BAC OSJN... 47 0.002
(P61594) RecName: Full=Microcephalin; &AY553023_1(AY553023|pid:... 47 0.002
(P61591) RecName: Full=Microcephalin; &AY553009_1(AY553009|pid:... 47 0.003
(P61593) RecName: Full=Microcephalin; &AY552995_1(AY552995|pid:... 47 0.003
AK022909_1(AK022909|pid:none) Homo sapiens cDNA FLJ12847 fis, cl... 46 0.003
AK301843_1(AK301843|pid:none) Homo sapiens cDNA FLJ51596 complet... 46 0.004
AP008213_2041(AP008213|pid:none) Oryza sativa (japonica cultivar... 45 0.010
AP004316_11(AP004316|pid:none) Oryza sativa Japonica Group genom... 45 0.010
AK042026_1(AK042026|pid:none) Mus musculus 3 days neonate thymus... 44 0.017
CP000587_330(CP000587|pid:none) Ostreococcus lucimarinus CCE9901... 43 0.037
EF587234_1(EF587234|pid:none) Drosophila melanogaster MCPH1 isof... 42 0.049
AY570943_1(AY570943|pid:none) Felis catus microcephalin mRNA, co... 42 0.064
AE013599_1417(AE013599|pid:none) Drosophila melanogaster chromos... 42 0.084
AP008209_1234(AP008209|pid:none) Oryza sativa (japonica cultivar... 41 0.11
BC085615_1(BC085615|pid:none) Homo sapiens breast cancer 1, earl... 40 0.19
CR380958_286(CR380958|pid:none) Candida glabrata strain CBS138 c... 40 0.24
DQ138912_1(DQ138912|pid:none) Drosophila yakuba strain T33 CG111... 40 0.32
BX538350_27(BX538350|pid:none) Cryptosporidium parvum chromosome... 40 0.32
Z66495_10(Z66495|pid:none) Caenorhabditis elegans Cosmid C36A4, ... 40 0.32
CP001323_596(CP001323|pid:none) Micromonas sp. RCC299 chromosome... 40 0.32
(B4JZG8) RecName: Full=Pescadillo homolog; 39 0.71
(B4KID9) RecName: Full=Pescadillo homolog; 38 0.92
U77627_1(U77627|pid:none) Danio rerio pes mRNA, complete cds. 37 2.1
T21915(T21915)hypothetical protein F37D6.1 - Caenorhabditis eleg... 37 2.1
BC160624_1(BC160624|pid:none) Danio rerio pescadillo, mRNA (cDNA... 37 2.1
(P79741) RecName: Full=Pescadillo; &BX470167_3(BX470167|pid:non... 37 2.1
(B4LQD0) RecName: Full=Pescadillo homolog; 37 2.1
AM481613_2(AM481613|pid:none) Vitis vinifera contig VV78X161473.... 37 2.7
(B4Q865) RecName: Full=Pescadillo homolog; 36 3.5
(Q0IE95) RecName: Full=Pescadillo homolog; 36 3.5
(B4HW93) RecName: Full=Pescadillo homolog; 36 3.5
BC067694_1(BC067694|pid:none) Danio rerio topoisomerase (DNA) II... 35 6.0
(O04251) RecName: Full=BRCT domain-containing protein At4g02110;... 35 6.0
BT042173_1(BT042173|pid:none) Zea mays full-length cDNA clone ZM... 35 6.0
(B4NE56) RecName: Full=Pescadillo homolog; 35 6.0
(Q7ZY69) RecName: Full=Pescadillo homolog; &BC043950_1(BC043950... 35 7.8
CU633446_48(CU633446|pid:none) Podospora anserina genomic DNA ch... 35 7.8
EU972195_1(EU972195|pid:none) Zea mays clone 377206 unknown mRNA. 35 7.8

>U32446_1(U32446|pid:none) Mus musculus putative breast/ovarian cancer
susceptibility protein homolog (Brca1) mRNA, complete
cds.
Length = 1812

Score = 80.9 bits (198), Expect = 1e-13
Identities = 53/212 (25%), Positives = 97/212 (45%)
Frame = +2

Query: 938 IIATGLTGLMQLHIHSLCSAIGGKLVTEFNDQVTHVVCSTLDGDGSKENLAKRTIKYQMG 1117
++ +GLT + + L ++ THV+ T E + +RT+KY +G
Sbjct: 1595 MVVSGLTPKEVMTVQKFAEKYRLTLTDAITEETTHVIIKT-----DAEFVCERTLKYFLG 1649

Query: 1118 IGRGGLWLVSFDWILESLNENQWVNESEFEIQGDSIGLGSPLKSRQQLFETKRLFYGQSF 1297
I GG W+VS+ W++ S+ E + +N EFE++GD + + R+ ++LF G
Sbjct: 1650 IA-GGKWIVSYSWVVRSIQERRLLNVHEFEVKGDVVTGRNHQGPRRSRESREKLFKGLQV 1708

Query: 1298 YLAGEFQSPSRQEITSVIKSSGGIVLDQLPPKPQNLNEMLQSTCTVICHPLLSSIDQSLI 1477
Y F + + E+ +++ G V+ +LP +L + VI P + D +
Sbjct: 1709 YCCEPFTNMPKDELERMLQLCGASVVKELP----SLTHDTGAHLVVIVQPSAWTEDSNCP 1764

Query: 1478 QTIYLSTKHIPISFSWIFDSISKYKLLPKDNY 1573
L + + + W+ DS+S Y+ D Y
Sbjct: 1765 DIGQLCKARL-VMWDWVLDSLSSYRCRDLDAY 1795

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,605,978,852
Number of extensions: 25913371
Number of successful extensions: 58957
Number of sequences better than 10.0: 89
Number of HSP's gapped: 58795
Number of HSP's successfully gapped: 89
Length of query: 537
Length of database: 1,040,966,779
Length adjustment: 133
Effective length of query: 404
Effective length of database: 614,796,874
Effective search space: 248377937096
Effective search space used: 248377937096
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.54 gvh: 0.23 alm: 0.36 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: nuclear
40.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: mitochondrial

>> prediction for Contig-U11290-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 1
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 1
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0