Contig-U11289-1
Contig ID Contig-U11289-1
Contig update 2002.12.18
Contig sequence
>Contig-U11289-1 (Contig-U11289-1Q) /CSM_Contig/Contig-U11289-1Q.Seq.d
CAATCGTGTGGTTTTTTAAACACTAAACTGTTTAATTTTTTCATTTTATT
TAAGTATTATTAAATTATCTTTATTGTTTTTTTTATTTTTTTTTTAANAT
CAAATTAAATTTTATAAAAAAAAAA----------CGCAATCGATCAATT
CGTTACAAGTGGTGAATCTAAATGGTTACGTCAAAGTGGTATTGTCATTC
TTTTACCTCACGGTTTCGACGGTGCCGGTCCAGAGCATTCAAGTTGTCGT
ATTGAACGTTTCCTTCAATTGAGTGATACCGAAGCTGTAAATGTCAAAGA
CGATACATTAATCAATCAAGAGACAAACTTTTACTTTATCAATCCTTCAA
CTCCTGCAAATTATTTCCATGCACTTCGTAGACAAATGATTAGAAACTAT
CGTAAACCATTGATTGTCGCTGGTCCAAAAGTATTATTACGTCATCCAAA
TTGTTTCTCAACTTTAAATGAAATGGCACCAGGAACTCATTTCCAAACAG
TTTTATCCGATCCTGATACCATCAATAACGCATCCACAATTAAACGTGTC
ATCTTTTGTAGTGGTAAAGTATTCTATGACCTCCAAGAGGAAAGAAAAGC
AAAGAATTTCAATGATGTAGCAATCATTCGTCTTGAACAAATCGCTCCAT
TCCCATATCAACGTATTCAAGAAGAAATCAATCGTTATTCAAACGCTACT
AAATTCGCTTGGGTTCAAGAAGAACAACAAAATGGTGGTTGTTGGTCATT
CGTTGAACCACGTTTCAAACAACGTTATCCACAAACTTCTCAAATTAAAT
ATATTGGTAGACCACCTTTAGCTGCTTCTGCAATTGGTATCTCTTCAATT
CATAAAAAAGAAGTTTCTCAATTATTAATTGATGCTTTTAATTTCTAAAA
AATAAAAAAATAAAAAAATAAAAAAATAAAAATAAAAATAAATT

Gap gap included
Contig length 934
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 3256616
End point 3257550
Strand (PLUS/MINUS) PLUS
Number of clones 21
Number of EST 28
Link to clone list U11289
List of clone(s)

est1=VHD293F,1,125
est2=CHQ136F,3,125
est3=SHH808F,6,125
est4=VHC819F,6,125
est5=VHD482F,6,125
est6=VHN447F,18,125
est7=AHE103F,22,125
est8=VHK860F,25,125
est9=AHE103Z,126,700
est10=VHK860Z,165,772
est11=SHA784Z,180,807
est12=VHN704Z,182,727
est13=CHE892Z,183,809
est14=VHC819Z,194,739
est15=CHR828Z,199,904
est16=SHC735Z,201,783
est17=VHC757Z,202,774
est18=SHD362Z,203,772
est19=VHD482Z,203,686
est20=VHN447Z,203,765
est21=CHJ266Z,204,734
est22=CHQ136Z,204,770
est23=VHD293Z,205,688
est24=CHQ364Z,208,939
est25=VHC383Z,223,873
est26=SFJ873Z,253,804
est27=VHF593Z,345,777
est28=VHG316Z,354,808
Translated Amino Acid sequence
ivwffkh*tv*ffhfi*VLLNYLYCFFYFFFXIKLNFIKKK---

---AIDQFVTSGESKWLRQSGIVILLPHGFDGAGPEHSSCRIERFLQLSDTEAVNVKDDT
LINQETNFYFINPSTPANYFHALRRQMIRNYRKPLIVAGPKVLLRHPNCFSTLNEMAPGT
HFQTVLSDPDTINNASTIKRVIFCSGKVFYDLQEERKAKNFNDVAIIRLEQIAPFPYQRI
QEEINRYSNATKFAWVQEEQQNGGCWSFVEPRFKQRYPQTSQIKYIGRPPLAASAIGISS
IHKKEVSQLLIDAFNF*kikk*knkkikikin


Translated Amino Acid sequence (All Frames)
Frame A:
qscgflntklfnffilfkyy*iifivffifflxsn*il*kk---

---rnrsirykw*i*mvtskwychsftsrfrrcrsrafklsy*tfpsie*yrsckcqrry
inqsrdklllyqsfnscklfpcts*tnd*kls*tidcrwsksiitssklflnfk*ngtrn
sfpnsfirs*yhq*rihn*tchll*w*sil*pprgkkskefq*csnhss*tnrsipisty
srrnqslfkry*irlgsrrttkwwllvir*ttfqttlstnfsn*iyw*ttfscfcnwylf
ns*krsfsiin*cf*flknkkikk*knknknk

Frame B:
nrvvf*tlnclifsfylsiiklsllfflfff*xqikfykkk---

---AIDQFVTSGESKWLRQSGIVILLPHGFDGAGPEHSSCRIERFLQLSDTEAVNVKDDT
LINQETNFYFINPSTPANYFHALRRQMIRNYRKPLIVAGPKVLLRHPNCFSTLNEMAPGT
HFQTVLSDPDTINNASTIKRVIFCSGKVFYDLQEERKAKNFNDVAIIRLEQIAPFPYQRI
QEEINRYSNATKFAWVQEEQQNGGCWSFVEPRFKQRYPQTSQIKYIGRPPLAASAIGISS
IHKKEVSQLLIDAFNF*kikk*knkkikikin

Frame C:
ivwffkh*tv*ffhfi*VLLNYLYCFFYFFFXIKLNFIKKK---

---qsinslqvvnlngyvkvvlsffyltvstvpvqsiqvvvlnvsfn*vipkl*msktih
*sikrqtftlsilqllqiismhfvdk*letivnh*lslvqkyyyviqivsql*mkwhqel
iskqfypilipsithpqlnvssfvvvkysmtskrkekqrismm*qsfvlnkslhshinvf
kkksiviqtllnslgfkknnkmvvvghslnhvsnnvihkllklnilvdhl*lllqlvslq
fikkkflny*lmlliskk*knkkikk*k*k*i

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U11289-1 (Contig-U11289-1Q)
/CSM_Contig/Contig-U11289-1Q.Seq.d
(944 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U11289-1 (Contig-U11289-1Q) /CSM_Contig/Conti... 1509 0.0
Contig-U11321-1 (Contig-U11321-1Q) /CSM_Contig/Conti... 64 3e-10
Contig-U13529-1 (Contig-U13529-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U01982-1 (Contig-U01982-1Q) /CSM_Contig/Conti... 40 0.004
Contig-U11816-1 (Contig-U11816-1Q) /CSM_Contig/Conti... 38 0.017
Contig-U11233-1 (Contig-U11233-1Q) /CSM_Contig/Conti... 34 0.26
Contig-U13875-1 (Contig-U13875-1Q) /CSM_Contig/Conti... 32 1.0
Contig-U12380-1 (Contig-U12380-1Q) /CSM_Contig/Conti... 32 1.0
Contig-U11513-1 (Contig-U11513-1Q) /CSM_Contig/Conti... 32 1.0

>Contig-U11289-1 (Contig-U11289-1Q) /CSM_Contig/Contig-U11289-1Q.Seq.d
Length = 944

Score = 1509 bits (761), Expect = 0.0
Identities = 761/761 (100%)
Strand = Plus / Plus


Query: 136 cgcaatcgatcaattcgttacaagtggtgaatctaaatggttacgtcaaagtggtattgt 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 cgcaatcgatcaattcgttacaagtggtgaatctaaatggttacgtcaaagtggtattgt 195


Query: 196 cattcttttacctcacggtttcgacggtgccggtccagagcattcaagttgtcgtattga 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 cattcttttacctcacggtttcgacggtgccggtccagagcattcaagttgtcgtattga 255


Query: 256 acgtttccttcaattgagtgataccgaagctgtaaatgtcaaagacgatacattaatcaa 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 acgtttccttcaattgagtgataccgaagctgtaaatgtcaaagacgatacattaatcaa 315


Query: 316 tcaagagacaaacttttactttatcaatccttcaactcctgcaaattatttccatgcact 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tcaagagacaaacttttactttatcaatccttcaactcctgcaaattatttccatgcact 375


Query: 376 tcgtagacaaatgattagaaactatcgtaaaccattgattgtcgctggtccaaaagtatt 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tcgtagacaaatgattagaaactatcgtaaaccattgattgtcgctggtccaaaagtatt 435


Query: 436 attacgtcatccaaattgtttctcaactttaaatgaaatggcaccaggaactcatttcca 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 attacgtcatccaaattgtttctcaactttaaatgaaatggcaccaggaactcatttcca 495


Query: 496 aacagttttatccgatcctgataccatcaataacgcatccacaattaaacgtgtcatctt 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aacagttttatccgatcctgataccatcaataacgcatccacaattaaacgtgtcatctt 555


Query: 556 ttgtagtggtaaagtattctatgacctccaagaggaaagaaaagcaaagaatttcaatga 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ttgtagtggtaaagtattctatgacctccaagaggaaagaaaagcaaagaatttcaatga 615


Query: 616 tgtagcaatcattcgtcttgaacaaatcgctccattcccatatcaacgtattcaagaaga 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tgtagcaatcattcgtcttgaacaaatcgctccattcccatatcaacgtattcaagaaga 675


Query: 676 aatcaatcgttattcaaacgctactaaattcgcttgggttcaagaagaacaacaaaatgg 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 aatcaatcgttattcaaacgctactaaattcgcttgggttcaagaagaacaacaaaatgg 735


Query: 736 tggttgttggtcattcgttgaaccacgtttcaaacaacgttatccacaaacttctcaaat 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 tggttgttggtcattcgttgaaccacgtttcaaacaacgttatccacaaacttctcaaat 795


Query: 796 taaatatattggtagaccacctttagctgcttctgcaattggtatctcttcaattcataa 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 taaatatattggtagaccacctttagctgcttctgcaattggtatctcttcaattcataa 855


Query: 856 aaaagaagtttctcaattattaattgatgcttttaatttct 896
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 aaaagaagtttctcaattattaattgatgcttttaatttct 896


Score = 34.2 bits (17), Expect = 0.26
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 99 atcaaattaaattttat 115
|||||||||||||||||
Sbjct: 99 atcaaattaaattttat 115


>Contig-U11321-1 (Contig-U11321-1Q) /CSM_Contig/Contig-U11321-1Q.Seq.d
Length = 2400

Score = 63.9 bits (32), Expect = 3e-10
Identities = 59/68 (86%)
Strand = Plus / Plus


Query: 203 ttacctcacggtttcgacggtgccggtccagagcattcaagttgtcgtattgaacgtttc 262
||||| || |||| ||| ||||| |||||||| ||||||||||||||||||||| | | |
Sbjct: 1635 ttaccacatggttacgatggtgctggtccagaacattcaagttgtcgtattgaaagatac 1694


Query: 263 cttcaatt 270
||||||||
Sbjct: 1695 cttcaatt 1702


Score = 30.2 bits (15), Expect = 4.1
Identities = 24/27 (88%)
Strand = Plus / Plus


Query: 346 ttcaactcctgcaaattatttccatgc 372
|||||| |||| ||| |||||||||||
Sbjct: 1790 ttcaacacctgtaaactatttccatgc 1816


>Contig-U13529-1 (Contig-U13529-1Q) /CSM_Contig/Contig-U13529-1Q.Seq.d
Length = 667

Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus


Query: 712 ggttcaagaagaacaacaaaatggt 736
|||||||| ||||||||||||||||
Sbjct: 448 ggttcaagcagaacaacaaaatggt 472


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8726
Number of Sequences: 6905
Number of extensions: 8726
Number of successful extensions: 846
Number of sequences better than 10.0: 87
length of query: 944
length of database: 5,674,871
effective HSP length: 16
effective length of query: 928
effective length of database: 5,564,391
effective search space: 5163754848
effective search space used: 5163754848
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.23
Homology vs DNA
Query= Contig-U11289-1 (Contig-U11289-1Q) /CSM_Contig/Contig-U11289-1Q.Seq.d
(944 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ385364) Dictyostelium discoideum cDNA clone:ddc54p15, 3' ... 1340 0.0 1
(BJ437926) Dictyostelium discoideum cDNA clone:ddv35f21, 3' ... 1283 0.0 1
(BJ443328) Dictyostelium discoideum cDNA clone:ddv52h16, 3' ... 1187 0.0 1
(BJ403657) Dictyostelium discoideum cDNA clone:dds25h21, 3' ... 1181 0.0 1
(BJ378409) Dictyostelium discoideum cDNA clone:ddc31h24, 3' ... 1166 0.0 2
(BJ404686) Dictyostelium discoideum cDNA clone:dds29f09, 3' ... 1152 0.0 1
(BJ350191) Dictyostelium discoideum cDNA clone:dda39e01, 3' ... 1134 0.0 1
(BJ405114) Dictyostelium discoideum cDNA clone:dds30l15, 3' ... 1130 0.0 1
(BJ386160) Dictyostelium discoideum cDNA clone:ddc57h08, 3' ... 1128 0.0 2
(BJ444782) Dictyostelium discoideum cDNA clone:ddv57n12, 3' ... 1110 0.0 1
(BJ402179) Dictyostelium discoideum cDNA clone:dds20b20, 3' ... 1090 0.0 1
(BJ444987) Dictyostelium discoideum cDNA clone:ddv58h01, 3' ... 1078 0.0 1
(BJ438007) Dictyostelium discoideum cDNA clone:ddv36f06, 3' ... 1078 0.0 1
(BJ385248) Dictyostelium discoideum cDNA clone:ddc54g09, 3' ... 1043 0.0 1
(BJ438144) Dictyostelium discoideum cDNA clone:ddv36b15, 3' ... 809 0.0 4
(BJ381147) Dictyostelium discoideum cDNA clone:ddc40c18, 3' ... 1011 0.0 1
(BJ438418) Dictyostelium discoideum cDNA clone:ddv37i24, 3' ... 955 0.0 1
(BJ438391) Dictyostelium discoideum cDNA clone:ddv37d22, 3' ... 955 0.0 1
(BJ409108) Dictyostelium discoideum cDNA clone:dds39p02, 3' ... 892 0.0 1
(BJ440285) Dictyostelium discoideum cDNA clone:ddv43p03, 3' ... 890 0.0 1
(BJ440171) Dictyostelium discoideum cDNA clone:ddv42i23, 3' ... 846 0.0 1
(BJ405759) Dictyostelium discoideum cDNA clone:dds32j23, 3' ... 64 2e-07 2
(BJ350814) Dictyostelium discoideum cDNA clone:dda41i06, 3' ... 64 2e-07 2
(FG153416) AGN_RNC106xj04f1.ab1 AGN_RNC Nicotiana tabacum cD... 48 5e-05 2
(EE003611) ROE00005784 Rhizopus oryzae Company Rhizopus oryz... 44 1e-04 2
(EE004184) ROE00011566 Rhizopus oryzae Company Rhizopus oryz... 44 1e-04 2
(DY393634) CL__Eb0008J18.f CL__Eb Curcuma longa cDNA clone C... 48 2e-04 2
(FG135818) AGN_ELP009xc07f1.ab1 AGN_ELP Nicotiana tabacum cD... 48 7e-04 2
(EB681944) KP1B.111A16F.060116T7 KP1B Nicotiana tabacum cDNA... 48 7e-04 2
(EB678056) KG9B.103H14F.051128T7 KG9B Nicotiana tabacum cDNA... 48 8e-04 2
(DV158696) KG9B.004F12F.050721T7 KG9B Nicotiana tabacum cDNA... 48 8e-04 2
(FG141822) AGN_RPC024xb22f1.ab1 AGN_RPC Nicotiana tabacum cD... 48 8e-04 2
(DY357261) ZO__Ed0001G21.r ZO__Ed Zingiber officinale cDNA c... 48 8e-04 2
(EK080215) 1092961098280 Global-Ocean-Sampling_GS-31-01-01-1... 54 0.010 1
(BJ385897) Dictyostelium discoideum cDNA clone:ddc56b18, 3' ... 46 0.029 2
(EC761585) PSE00000349 rw_mgpallid Polysphondylium pallidum ... 50 0.030 2
(FD462929) LARVV92TR Haematobia irritans 1st Instar Larvae H... 46 0.034 3
(ER452576) 1092963854753 Global-Ocean-Sampling_GS-35-01-01-1... 52 0.039 1
(EK237558) 1095460208636 Global-Ocean-Sampling_GS-31-01-01-1... 52 0.039 1
(FK717171) pl_1564-1657-H10 Ilyanassa (snail) 0-48h Ilyanass... 52 0.039 1
(DR751894) 07-E10 suppression subtractive hybridization libr... 40 0.060 2
(CA523776) KS12028D03 KS12 Capsicum annuum cDNA, mRNA sequence. 40 0.095 2
(CV970298) PO003H2 infected potato, outside of lesion 6 dpi ... 40 0.11 2
(DN983120) SV66D10_SOL12A_078 SV6 Solanum chacoense cDNA, mR... 40 0.12 2
(BQ511348) EST618763 Generation of a set of potato cDNA clon... 40 0.14 2
(EK315350) 1095462411144 Global-Ocean-Sampling_GS-31-01-01-1... 50 0.15 1
(EK311456) 1095462398511 Global-Ocean-Sampling_GS-31-01-01-1... 50 0.15 1
(EJ038786) 1095454083356 Global-Ocean-Sampling_GS-26-01-01-1... 50 0.15 1
(EJ002305) 1091120930541 Global-Ocean-Sampling_GS-26-01-01-1... 50 0.15 1
(EK420364) 1095515502661 Global-Ocean-Sampling_GS-31-01-01-1... 46 0.15 2
(CK267723) EST713801 potato abiotic stress cDNA library Sola... 40 0.16 2
(CD472558) nad01-1ms8-f10 Nad01 Nuphar advena cDNA clone nad... 36 0.44 2
(BM401054) 5009-0-82-A06.t.1 Chilcoat/Turkewitz cDNA (large ... 46 0.45 2
(ES734720) Nad03b_69_C12_C005.g1 Nuphar advena flower bud li... 36 0.45 2
(CK746714) nad03-2cs4-a05 Nad03 Nuphar advena cDNA clone nad... 36 0.45 2
(CV003360) nad03-2cs3-b09 Nad03 Nuphar advena cDNA clone nad... 36 0.45 2
(EL598554) He_pwd_0174H04_M13R Heliconius erato pooled wing ... 38 0.48 2
(BT013018) Lycopersicon esculentum clone 114256R, mRNA seque... 48 0.61 1
(AC203429) Zea mays chromosome 10 clone CH201-140O4; ZMMBBc0... 48 0.61 1
(AC198890) Zea mays chromosome 10 clone CH201-385C4; ZMMBBc0... 48 0.61 1
(AC197710) Zea mays chromosome 2 clone CH201-327E17; ZMMBBc0... 48 0.61 1
(AY103815) Zea mays PCO096873 mRNA sequence. 48 0.61 1
(ET914363) CHO_OF194xe23r1.ab1 CHO_OF Nicotiana tabacum geno... 48 0.61 1
(CL993553) ZMMBHf0005f03.r ZMMBHf Zea mays genomic clone ZMM... 48 0.61 1
(CL989483) ZMMBHe0006n18.r ZMMBHe Zea mays genomic clone ZMM... 48 0.61 1
(CG443640) OGVHP88TH ZM_0.7_1.5_KB Zea mays genomic clone ZM... 48 0.61 1
(CG101440) PUJFV09TD ZM_0.6_1.0_KB Zea mays genomic clone ZM... 48 0.61 1
(CC631774) OGKAC35TV ZM_0.7_1.5_KB Zea mays genomic clone ZM... 48 0.61 1
(CC409850) PUHBK49TB ZM_0.6_1.0_KB Zea mays genomic clone ZM... 48 0.61 1
(BZ319034) hx52c12.g1 WGS-ZmaysF (JM107 adapted methyl filte... 48 0.61 1
(EH665858) 27B03 Transformed tobacco Lambda Zap II library N... 48 0.61 1
(EE023188) ZM_BFc0078F04.r ZM_BFc Zea mays cDNA clone ZM_BFc... 48 0.61 1
(EB695946) NecGex_303G06 Ornamental tobacco (LxS8) post-fert... 48 0.61 1
(DV943126) 1000133-A05.T7-1 UGI-Reseq Zea mays cDNA, mRNA se... 48 0.61 1
(DV172472) ZM_BFb0175B05.r ZM_BFb Zea mays cDNA 5', mRNA seq... 48 0.61 1
(DT687265) s13dFA11G09FM072_474170 Tall fescue, Festuca arun... 48 0.61 1
(DN559836) ME25-G12-T3-96-R1 E7PCR Zea mays cDNA clone E7PCR... 48 0.61 1
(DN218462) MEST1067_C05.T7-1 UGA-ZmSAM-XZ2 Zea mays cDNA, mR... 48 0.61 1
(DN152324) 5222_H03_O06 Switchgrass callus cDNA library Pani... 48 0.61 1
(DN152191) 5236_F02_L04 Switchgrass callus cDNA library Pani... 48 0.61 1
(DB725616) Solanum lycopersicum cDNA, clone: LEFL2049P07, 5'... 48 0.61 1
(AM808455) Nicotiana tabacum EST, clone nt006076038. 48 0.61 1
(CV499157) 63483.1 Mixed Leaf Solanum tuberosum cDNA clone 6... 48 0.61 1
(CV190124) vco01-2ms3-a02 Vco01 Vaccinium corymbosum cDNA cl... 48 0.61 1
(CO464322) MZCCL15046F03.g Maize Endosperm cDNA Library Zea ... 48 0.61 1
(CO458243) MZCCS15016C08.g Maize Endosperm cDNA Library Zea ... 48 0.61 1
(AI948271) 603039F07.x1 603 - stressed root cDNA library fro... 48 0.61 1
(CF026467) QCA7g05.yg QCA Zea mays cDNA clone QCA7g05, mRNA ... 48 0.61 1
(CF026301) QCA5f05.yg QCA Zea mays cDNA clone QCA5f05, mRNA ... 48 0.61 1
(CF025852) QCA21f04.yg QCA Zea mays cDNA clone QCA21f04, mRN... 48 0.61 1
(CF025366) QCA15g10.yg QCA Zea mays cDNA clone QCA15g10, mRN... 48 0.61 1
(CF024978) QCA10f03.yg QCA Zea mays cDNA clone QCA10f03, mRN... 48 0.61 1
(CD975269) QAE55e04.yg QAE Zea mays cDNA clone QAE55e04, mRN... 48 0.61 1
(CD975054) QAE52h04.yg QAE Zea mays cDNA clone QAE52h04, mRN... 48 0.61 1
(CD974999) QAE52b08.yg QAE Zea mays cDNA clone QAE52b08, mRN... 48 0.61 1
(CD974482) QAE46g02.yg QAE Zea mays cDNA clone QAE46g02, mRN... 48 0.61 1
(CD973118) QAE30c09.yg QAE Zea mays cDNA clone QAE30c09, mRN... 48 0.61 1
(CD440907) EL01N0562C05.b Endosperm_5 Zea mays cDNA, mRNA se... 48 0.61 1
(AI780076) EST260955 tomato susceptible, Cornell Solanum lyc... 48 0.61 1
(BG267548) 1000133A05.x2 1000 - Unigene I from Maize Genome ... 48 0.61 1

>(BJ385364) Dictyostelium discoideum cDNA clone:ddc54p15, 3' end,
single read.
Length = 729

Score = 1340 bits (676), Expect = 0.0
Identities = 679/680 (99%)
Strand = Plus / Minus


Query: 217 cgacggtgccggtccagagcattcaagttgtcgtattgaacgtttccttcaattgagtga 276
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 729 cgacggtgccggtccagagcattcaagttgtcgtattgaacgtttctttcaattgagtga 670


Query: 277 taccgaagctgtaaatgtcaaagacgatacattaatcaatcaagagacaaacttttactt 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 taccgaagctgtaaatgtcaaagacgatacattaatcaatcaagagacaaacttttactt 610


Query: 337 tatcaatccttcaactcctgcaaattatttccatgcacttcgtagacaaatgattagaaa 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tatcaatccttcaactcctgcaaattatttccatgcacttcgtagacaaatgattagaaa 550


Query: 397 ctatcgtaaaccattgattgtcgctggtccaaaagtattattacgtcatccaaattgttt 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 ctatcgtaaaccattgattgtcgctggtccaaaagtattattacgtcatccaaattgttt 490


Query: 457 ctcaactttaaatgaaatggcaccaggaactcatttccaaacagttttatccgatcctga 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ctcaactttaaatgaaatggcaccaggaactcatttccaaacagttttatccgatcctga 430


Query: 517 taccatcaataacgcatccacaattaaacgtgtcatcttttgtagtggtaaagtattcta 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 taccatcaataacgcatccacaattaaacgtgtcatcttttgtagtggtaaagtattcta 370


Query: 577 tgacctccaagaggaaagaaaagcaaagaatttcaatgatgtagcaatcattcgtcttga 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tgacctccaagaggaaagaaaagcaaagaatttcaatgatgtagcaatcattcgtcttga 310


Query: 637 acaaatcgctccattcccatatcaacgtattcaagaagaaatcaatcgttattcaaacgc 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 acaaatcgctccattcccatatcaacgtattcaagaagaaatcaatcgttattcaaacgc 250


Query: 697 tactaaattcgcttgggttcaagaagaacaacaaaatggtggttgttggtcattcgttga 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tactaaattcgcttgggttcaagaagaacaacaaaatggtggttgttggtcattcgttga 190


Query: 757 accacgtttcaaacaacgttatccacaaacttctcaaattaaatatattggtagaccacc 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 accacgtttcaaacaacgttatccacaaacttctcaaattaaatatattggtagaccacc 130


Query: 817 tttagctgcttctgcaattggtatctcttcaattcataaaaaagaagtttctcaattatt 876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 tttagctgcttctgcaattggtatctcttcaattcataaaaaagaagtttctcaattatt 70


Query: 877 aattgatgcttttaatttct 896
||||||||||||||||||||
Sbjct: 69 aattgatgcttttaatttct 50

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 872,462,128
Number of extensions: 50011607
Number of successful extensions: 4232373
Number of sequences better than 10.0: 153
Length of query: 944
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 920
Effective length of database: 97,308,875,965
Effective search space: 89524165887800
Effective search space used: 89524165887800
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.29
Homology vs Protein
Query= Contig-U11289-1 (Contig-U11289-1Q) /CSM_Contig/Contig-U11289-1Q.Seq.d
(944 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

BC117994_1(BC117994|pid:none) Mus musculus dehydrogenase E1 and ... 260 4e-68
AK050057_1(AK050057|pid:none) Mus musculus adult male liver tumo... 260 4e-68
(A2ATU0) RecName: Full=Probable 2-oxoglutarate dehydrogenase E1 ... 260 4e-68
(Q5PRA2) RecName: Full=Probable 2-oxoglutarate dehydrogenase E1 ... 258 2e-67
BC086742_1(BC086742|pid:none) Danio rerio dehydrogenase E1 and t... 258 2e-67
(Q4KLP0) RecName: Full=Probable 2-oxoglutarate dehydrogenase E1 ... 257 5e-67
BC002477_1(BC002477|pid:none) Homo sapiens dehydrogenase E1 and ... 255 2e-66
CR749726_1(CR749726|pid:none) Homo sapiens mRNA; cDNA DKFZp762M1... 255 2e-66
EF710647_17(EF710647|pid:none) Glyptapanteles flavicoxis clone B... 253 7e-66
(Q6P286) RecName: Full=Probable 2-oxoglutarate dehydrogenase E1 ... 250 4e-65
(Q5R7H0) RecName: Full=Probable 2-oxoglutarate dehydrogenase E1 ... 250 6e-65
BT001573_1(BT001573|pid:none) Drosophila melanogaster RE22749 fu... 242 1e-62
T28034(T28034)hypothetical protein ZK836.2 - Caenorhabditis eleg... 240 6e-62
CR388058_2(CR388058|pid:none) Zebrafish DNA sequence from clone ... 239 8e-62
BC091944_1(BC091944|pid:none) Danio rerio similar to oxoglutarat... 239 8e-62
AE014296_3010(AE014296|pid:none) Drosophila melanogaster chromos... 239 1e-61
AE014296_3014(AE014296|pid:none) Drosophila melanogaster chromos... 239 1e-61
BT001767_1(BT001767|pid:none) Drosophila melanogaster RH09189 fu... 238 2e-61
AK100482_1(AK100482|pid:none) Oryza sativa Japonica Group cDNA c... 238 2e-61
AP008210_651(AP008210|pid:none) Oryza sativa (japonica cultivar-... 238 2e-61
CR855099_7(CR855099|pid:none) Oryza sativa genomic DNA, chromoso... 238 2e-61
AJ720527_1(AJ720527|pid:none) Gallus gallus mRNA for hypothetica... 236 8e-61
AK294951_1(AK294951|pid:none) Homo sapiens cDNA FLJ53323 complet... 236 8e-61
AK304690_1(AK304690|pid:none) Homo sapiens cDNA FLJ59657 complet... 236 8e-61
(Q02218) RecName: Full=2-oxoglutarate dehydrogenase E1 component... 236 8e-61
AK293871_1(AK293871|pid:none) Homo sapiens cDNA FLJ53308 complet... 236 8e-61
AK296400_1(AK296400|pid:none) Homo sapiens cDNA FLJ59557 complet... 236 8e-61
BC168626_1(BC168626|pid:none) Xenopus tropicalis cDNA clone MGC:... 235 1e-60
AK302805_1(AK302805|pid:none) Homo sapiens cDNA FLJ54570 complet... 235 1e-60
CP000789_1271(CP000789|pid:none) Vibrio harveyi ATCC BAA-1116 ch... 235 2e-60
BT066193_1(BT066193|pid:none) Zea mays full-length cDNA clone ZM... 235 2e-60
BT067679_1(BT067679|pid:none) Zea mays full-length cDNA clone ZM... 235 2e-60
BT068435_1(BT068435|pid:none) Zea mays full-length cDNA clone ZM... 235 2e-60
(P45303) RecName: Full=2-oxoglutarate dehydrogenase E1 component... 234 2e-60
E64135(E64135) oxoglutarate dehydrogenase (lipoamide) (EC 1.2.4.... 234 2e-60
AB046850_1(AB046850|pid:none) Homo sapiens mRNA for KIAA1630 pro... 234 3e-60
CP000671_663(CP000671|pid:none) Haemophilus influenzae PittEE, c... 234 3e-60
BC154396_1(BC154396|pid:none) Bos taurus oxoglutarate (alpha-ket... 234 3e-60
AK229884_1(AK229884|pid:none) Arabidopsis thaliana mRNA for 2-ox... 233 5e-60
CP000057_1715(CP000057|pid:none) Haemophilus influenzae 86-028NP... 233 5e-60
(Q54JE4) RecName: Full=2-oxoglutarate dehydrogenase E1 component... 233 9e-60
(Q5XI78) RecName: Full=2-oxoglutarate dehydrogenase E1 component... 232 1e-59
BC073213_1(BC073213|pid:none) Xenopus laevis MGC80496 protein, m... 232 2e-59
CP000672_326(CP000672|pid:none) Haemophilus influenzae PittGG, c... 232 2e-59
CR378666_106(CR378666|pid:none) Photobacterium profundum SS9; se... 231 3e-59
(Q59106) RecName: Full=2-oxoglutarate dehydrogenase E1 component... 231 4e-59
BC049104_1(BC049104|pid:none) Mus musculus oxoglutarate dehydrog... 230 5e-59
AK220536_1(AK220536|pid:none) Mus musculus mRNA for mKIAA4192 pr... 230 5e-59
(Q8K2Z3) RecName: Full=2-oxoglutarate dehydrogenase E1 component... 230 5e-59
BC031165_1(BC031165|pid:none) Mus musculus oxoglutarate dehydrog... 230 5e-59
AL607152_10(AL607152|pid:none) Mouse DNA sequence from clone RP2... 230 5e-59
AY449460_20(AY449460|pid:none) Oikopleura dioica clone BACOIKO00... 230 6e-59
AK230103_1(AK230103|pid:none) Arabidopsis thaliana mRNA for 2-ox... 230 6e-59
AJ223802_1(AJ223802|pid:none) Arabidopsis thaliana mRNA for 2-ox... 230 6e-59
CP001325_258(CP001325|pid:none) Micromonas sp. RCC299 chromosome... 230 6e-59
AM747720_1509(AM747720|pid:none) Burkholderia cenocepacia J2315 ... 229 8e-59
CP000086_2513(CP000086|pid:none) Burkholderia thailandensis E264... 229 1e-58
CP000653_1217(CP000653|pid:none) Enterobacter sp. 638, complete ... 229 1e-58
CP001052_1597(CP001052|pid:none) Burkholderia phytofirmans PsJN ... 229 1e-58
CP001503_1892(CP001503|pid:none) Burkholderia glumae BGR1 chromo... 229 1e-58
CP000378_1019(CP000378|pid:none) Burkholderia cenocepacia AU 105... 229 1e-58
CP000151_1461(CP000151|pid:none) Burkholderia sp. 383 chromosome... 229 1e-58
FM954972_2125(FM954972|pid:none) Vibrio splendidus LGP32 chromos... 229 1e-58
CP001139_813(CP001139|pid:none) Vibrio fischeri MJ11 chromosome ... 229 1e-58
CP000020_816(CP000020|pid:none) Vibrio fischeri ES114 chromosome... 229 1e-58
BA000037_1032(BA000037|pid:none) Vibrio vulnificus YJ016 DNA, ch... 228 2e-58
AE016795_150(AE016795|pid:none) Vibrio vulnificus CMCP6 chromoso... 228 2e-58
D10523_1(D10523|pid:none) Homo sapiens mRNA for 2-oxoglutarate d... 228 2e-58
CU633749_1820(CU633749|pid:none) Cupriavidus taiwanensis str. LM... 227 4e-58
AD0591(AD0591) 2-oxoglutarate dehydrogenase E1 component [import... 227 4e-58
CP001032_4171(CP001032|pid:none) Opitutus terrae PB90-1, complet... 227 4e-58
AM933173_705(AM933173|pid:none) Salmonella enterica subsp. enter... 227 4e-58
AE017220_740(AE017220|pid:none) Salmonella enterica subsp. enter... 227 4e-58
D32064_1(D32064|pid:none) Homo sapiens ogdh gene for 2-oxoglutar... 226 7e-58
AP006725_1507(AP006725|pid:none) Klebsiella pneumoniae NTUH-K204... 226 1e-57
CP000822_2372(CP000822|pid:none) Citrobacter koseri ATCC BAA-895... 226 1e-57
CP000964_3765(CP000964|pid:none) Klebsiella pneumoniae 342, comp... 225 1e-57
FP236842_2438(FP236842|pid:none) Erwinia pyrifoliae strain Ep1/9... 225 1e-57
J01619_6(J01619|pid:none) Eschericia coli gltA gene, sdhCDAB ope... 225 2e-57
CP000034_613(CP000034|pid:none) Shigella dysenteriae Sd197, comp... 225 2e-57
CP000036_536(CP000036|pid:none) Shigella boydii Sb227, complete ... 225 2e-57
AE005674_571(AE005674|pid:none) Shigella flexneri 2a str. 301, c... 225 2e-57
(P0AFG3) RecName: Full=2-oxoglutarate dehydrogenase E1 component... 225 2e-57
CP000266_573(CP000266|pid:none) Shigella flexneri 5 str. 8401, c... 225 2e-57
CU651637_629(CU651637|pid:none) Escherichia coli LF82 chromosome... 225 2e-57
AE005174_750(AE005174|pid:none) Escherichia coli O157:H7 EDL933,... 225 2e-57
CP000026_1871(CP000026|pid:none) Salmonella enterica subsp. ente... 225 2e-57
(Q9ULD0) RecName: Full=2-oxoglutarate dehydrogenase E1 component... 224 3e-57
BC026320_1(BC026320|pid:none) Homo sapiens oxoglutarate dehydrog... 224 3e-57
CP001091_532(CP001091|pid:none) Actinobacillus pleuropneumoniae ... 224 3e-57
CP000569_451(CP000569|pid:none) Actinobacillus pleuropneumoniae ... 224 3e-57
AK296551_1(AK296551|pid:none) Homo sapiens cDNA FLJ55334 complet... 224 3e-57
AK290226_1(AK290226|pid:none) Homo sapiens cDNA FLJ77902 complet... 224 3e-57
CP000687_457(CP000687|pid:none) Actinobacillus pleuropneumoniae ... 224 3e-57
AK001713_1(AK001713|pid:none) Homo sapiens cDNA FLJ10851 fis, cl... 224 3e-57
AB033116_1(AB033116|pid:none) Homo sapiens mRNA for KIAA1290 pro... 224 3e-57
BX950851_1347(BX950851|pid:none) Erwinia carotovora subsp. atros... 224 4e-57
CP000521_2985(CP000521|pid:none) Acinetobacter baumannii ATCC 17... 223 6e-57
AC146750_27(AC146750|pid:none) Medicago truncatula clone mth2-16... 223 7e-57
CP000613_2212(CP000613|pid:none) Rhodospirillum centenum SW, com... 223 1e-56
AP007255_3961(AP007255|pid:none) Magnetospirillum magneticum AMB... 223 1e-56
CP000038_636(CP000038|pid:none) Shigella sonnei Ss046, complete ... 222 2e-56
CR859369_1(CR859369|pid:none) Pongo abelii mRNA; cDNA DKFZp459M2... 222 2e-56
AE004439_277(AE004439|pid:none) Pasteurella multocida subsp. mul... 222 2e-56
CU468230_724(CU468230|pid:none) Acinetobacter baumannii str. SDF... 221 2e-56
CP001068_1078(CP001068|pid:none) Ralstonia pickettii 12J chromos... 221 3e-56
CU695238_103(CU695238|pid:none) Ralstonia solanacearum strain Mo... 221 4e-56
CU914168_1577(CU914168|pid:none) Ralstonia solanacearum strain I... 221 4e-56
CP000697_1600(CP000697|pid:none) Acidiphilium cryptum JF-5, comp... 221 4e-56
AM942759_562(AM942759|pid:none) Proteus mirabilis strain HI4320,... 220 5e-56
CP000143_2580(CP000143|pid:none) Rhodobacter sphaeroides 2.4.1 c... 220 5e-56
CP001150_2357(CP001150|pid:none) Rhodobacter sphaeroides KD131 c... 220 6e-56
AE014296_3009(AE014296|pid:none) Drosophila melanogaster chromos... 220 6e-56
AY194228_5(AY194228|pid:none) Enterobacter cloacae succinate deh... 220 6e-56
CP000774_1451(CP000774|pid:none) Parvibaculum lavamentivorans DS... 220 6e-56
AL646052_1270(AL646052|pid:none) Ralstonia solanacearum GMI1000 ... 219 8e-56
CP001600_2767(CP001600|pid:none) Edwardsiella ictaluri 93-146, c... 219 8e-56
AL132975_7(AL132975|pid:none) Arabidopsis thaliana DNA chromosom... 219 1e-55
BA000012_3309(BA000012|pid:none) Mesorhizobium loti MAFF303099 D... 219 1e-55
CP001349_1080(CP001349|pid:none) Methylobacterium nodulans ORS 2... 218 2e-55
CP001001_905(CP001001|pid:none) Methylobacterium radiotolerans J... 218 2e-55
U41762_1(U41762|pid:none) Rhodobacter capsulatus alpha-ketogluta... 218 2e-55
CP000388_1787(CP000388|pid:none) Pseudoalteromonas atlantica T6c... 218 2e-55
AL591688_3063(AL591688|pid:none) Sinorhizobium meliloti 1021 com... 218 3e-55
AE017143_1131(AE017143|pid:none) Haemophilus ducreyi strain 3500... 218 3e-55
CP000661_76(CP000661|pid:none) Rhodobacter sphaeroides ATCC 1702... 218 3e-55
AE005673_338(AE005673|pid:none) Caulobacter crescentus CB15, com... 217 4e-55
CP000539_1753(CP000539|pid:none) Acidovorax sp. JS42, complete g... 217 4e-55
CP001340_342(CP001340|pid:none) Caulobacter crescentus NA1000, c... 217 4e-55
BX897700_1292(BX897700|pid:none) Bartonella quintana str. Toulou... 217 4e-55
CP001029_1552(CP001029|pid:none) Methylobacterium populi BJ001, ... 217 4e-55
CP000462_1876(CP000462|pid:none) Aeromonas hydrophila subsp. hyd... 217 5e-55
(Q68EW0) RecName: Full=2-oxoglutarate dehydrogenase E1 component... 217 5e-55
CP001298_1821(CP001298|pid:none) Methylobacterium chloromethanic... 217 5e-55
CP000908_1616(CP000908|pid:none) Methylobacterium extorquens PA1... 217 5e-55
CP001191_3641(CP001191|pid:none) Rhizobium leguminosarum bv. tri... 217 5e-55
AL844507_198(AL844507|pid:none) Plasmodium falciparum 3D7 chromo... 217 5e-55
CP001074_4111(CP001074|pid:none) Rhizobium etli CIAT 652, comple... 217 5e-55
CP000302_2168(CP000302|pid:none) Shewanella denitrificans OS217,... 216 7e-55
CP000436_966(CP000436|pid:none) Haemophilus somnus 129PT, comple... 216 9e-55
CP000781_156(CP000781|pid:none) Xanthobacter autotrophicus Py2, ... 216 9e-55
CR954246_1606(CR954246|pid:none) Pseudoalteromonas haloplanktis ... 216 1e-54
CP000133_3831(CP000133|pid:none) Rhizobium etli CFN 42, complete... 216 1e-54
AP007155_917(AP007155|pid:none) Aspergillus oryzae RIB40 genomic... 216 1e-54
CP001389_3058(CP001389|pid:none) Rhizobium sp. NGR234, complete ... 215 2e-54
CP000507_1422(CP000507|pid:none) Shewanella amazonensis SB2B, co... 214 3e-54
CU207211_1675(CU207211|pid:none) Herminiimonas arsenicoxydans ch... 214 3e-54
(A6WXF0) RecName: Full=2-oxoglutarate dehydrogenase E1 component... 214 3e-54
CP000746_1539(CP000746|pid:none) Actinobacillus succinogenes 130... 214 3e-54
CP000644_2189(CP000644|pid:none) Aeromonas salmonicida subsp. sa... 214 3e-54
AM902716_1840(AM902716|pid:none) Bordetella petrii strain DSM 12... 214 3e-54
(B2S877) RecName: Full=2-oxoglutarate dehydrogenase E1 component... 214 3e-54
(Q8YJE4) RecName: Full=2-oxoglutarate dehydrogenase E1 component... 214 3e-54
CP001327_62(CP001327|pid:none) Micromonas sp. RCC299 chromosome ... 214 3e-54
(A9M8Q9) RecName: Full=2-oxoglutarate dehydrogenase E1 component... 214 3e-54
T15098(T15098)hypothetical protein T22B11.5 - Caenorhabditis ele... 214 4e-54
(O61199) RecName: Full=2-oxoglutarate dehydrogenase E1 component... 214 4e-54
CP000447_2326(CP000447|pid:none) Shewanella frigidimarina NCIMB ... 214 4e-54
(Q1RHI4) RecName: Full=2-oxoglutarate dehydrogenase E1 component... 213 6e-54
CP000849_340(CP000849|pid:none) Rickettsia bellii OSU 85-389, co... 213 6e-54
CP000031_334(CP000031|pid:none) Ruegeria pomeroyi DSS-3, complet... 213 6e-54
CP000961_1820(CP000961|pid:none) Shewanella woodyi ATCC 51908, c... 213 6e-54
CP000529_1839(CP000529|pid:none) Polaromonas naphthalenivorans C... 213 8e-54
CP000362_1499(CP000362|pid:none) Roseobacter denitrificans OCh 1... 213 8e-54
AM260525_2118(AM260525|pid:none) Bartonella tribocorum CIP 10547... 213 8e-54
CP000851_1782(CP000851|pid:none) Shewanella pealeana ATCC 700345... 213 8e-54
CP000606_1649(CP000606|pid:none) Shewanella loihica PV-4, comple... 212 2e-53
CP000512_3192(CP000512|pid:none) Acidovorax citrulli AAC00-1, co... 212 2e-53
CP000159_1141(CP000159|pid:none) Salinibacter ruber DSM 13855, c... 212 2e-53
AM181176_1779(AM181176|pid:none) Pseudomonas fluorescens SBW25 c... 212 2e-53
AM910987_104(AM910987|pid:none) Plasmodium knowlesi strain H chr... 212 2e-53
AY375300_1(AY375300|pid:none) Bartonella henselae 2-oxoglutarate... 211 2e-53
AB099923_1(AB099923|pid:none) Bartonella henselae sucA, sucB gen... 211 2e-53
CP000633_3023(CP000633|pid:none) Agrobacterium vitis S4 chromoso... 211 2e-53
CP000713_261(CP000713|pid:none) Psychrobacter sp. PRwf-1, comple... 211 3e-53
CP000444_1697(CP000444|pid:none) Shewanella sp. MR-7, complete g... 211 4e-53
U73618_1(U73618|pid:none) Bradyrhizobium japonicum alpha-ketoglu... 211 4e-53
AE014299_1894(AE014299|pid:none) Shewanella oneidensis MR-1, com... 210 5e-53
AM501426_4(AM501426|pid:none) Uncultured marine microorganism, c... 210 5e-53
BX572593_190(BX572593|pid:none) Rhodopseudomonas palustris CGA00... 210 5e-53
(Q623T0) RecName: Full=2-oxoglutarate dehydrogenase E1 component... 210 5e-53
AY160679_1(AY160679|pid:none) Bartonella vinsonii subsp. berkhof... 210 5e-53
CP000489_550(CP000489|pid:none) Paracoccus denitrificans PD1222 ... 210 6e-53
CP000283_542(CP000283|pid:none) Rhodopseudomonas palustris BisB5... 210 6e-53
CP000264_831(CP000264|pid:none) Jannaschia sp. CCS1, complete ge... 209 8e-53
AE017340_1497(AE017340|pid:none) Idiomarina loihiensis L2TR, com... 209 8e-53
AE007869_2568(AE007869|pid:none) Agrobacterium tumefaciens str. ... 209 8e-53
CP001391_1136(CP001391|pid:none) Wolbachia sp. wRi, complete gen... 209 1e-52
AM494475_1490(AM494475|pid:none) Orientia tsutsugamushi Boryong ... 209 1e-52
CP001016_3503(CP001016|pid:none) Beijerinckia indica subsp. indi... 209 1e-52
CP000323_111(CP000323|pid:none) Psychrobacter cryohalolentis K5,... 209 1e-52
CP000926_3734(CP000926|pid:none) Pseudomonas putida GB-1, comple... 209 1e-52
CP000269_1512(CP000269|pid:none) Janthinobacterium sp. Marseille... 209 1e-52
CP000016_319(CP000016|pid:none) Candidatus Blochmannia pennsylva... 208 2e-52
CP000542_3893(CP000542|pid:none) Verminephrobacter eiseniae EF01... 208 2e-52
CP001359_824(CP001359|pid:none) Anaeromyxobacter dehalogenans 2C... 207 3e-52
CP000931_2470(CP000931|pid:none) Shewanella halifaxensis HAW-EB4... 207 3e-52
CP000127_88(CP000127|pid:none) Nitrosococcus oceani ATCC 19707, ... 207 3e-52
CP000595_34(CP000595|pid:none) Ostreococcus lucimarinus CCE9901 ... 207 4e-52
CP000821_2808(CP000821|pid:none) Shewanella sediminis HAW-EB3, c... 207 4e-52
CP000891_2614(CP000891|pid:none) Shewanella baltica OS195, compl... 207 4e-52
AM501427_7(AM501427|pid:none) Uncultured marine microorganism, c... 207 4e-52
CP000563_2471(CP000563|pid:none) Shewanella baltica OS155, compl... 207 4e-52
CP000115_421(CP000115|pid:none) Nitrobacter winogradskyi Nb-255,... 207 5e-52
AM920437_477(AM920437|pid:none) Penicillium chrysogenum Wisconsi... 206 7e-52
CP000058_1892(CP000058|pid:none) Pseudomonas syringae pv. phaseo... 206 7e-52
CP000356_2211(CP000356|pid:none) Sphingopyxis alaskensis RB2256,... 206 7e-52
CP001280_2444(CP001280|pid:none) Methylocella silvestris BL2, co... 206 9e-52
AB066297_1(AB066297|pid:none) Pseudomonas putida kdgA, kdgB gene... 206 1e-51
CP000744_3647(CP000744|pid:none) Pseudomonas aeruginosa PA7, com... 206 1e-51
CP001196_574(CP001196|pid:none) Oligotropha carboxidovorans OM5 ... 206 1e-51
CP000712_1644(CP000712|pid:none) Pseudomonas putida F1, complete... 206 1e-51
AE004091_1587(AE004091|pid:none) Pseudomonas aeruginosa PAO1, co... 206 1e-51
CP000319_530(CP000319|pid:none) Nitrobacter hamburgensis X14, co... 206 1e-51
AE015451_4136(AE015451|pid:none) Pseudomonas putida KT2440 compl... 206 1e-51
CP000681_2254(CP000681|pid:none) Shewanella putrefaciens CN-32, ... 205 2e-51
CP000698_1246(CP000698|pid:none) Geobacter uraniireducens Rf4, c... 205 2e-51
AM743169_3020(AM743169|pid:none) Stenotrophomonas maltophilia K2... 205 2e-51
AF068740_2(AF068740|pid:none) Pseudomonas putida dihydrolipoamid... 205 2e-51
CP000699_1290(CP000699|pid:none) Sphingomonas wittichii RW1, com... 204 3e-51
CP000777_1002(CP000777|pid:none) Leptospira biflexa serovar Pato... 204 3e-51
CP001111_2625(CP001111|pid:none) Stenotrophomonas maltophilia R5... 204 4e-51
AL355933_16(AL355933|pid:none) Neurospora crassa DNA linkage gro... 204 4e-51
CT573326_3372(CT573326|pid:none) Pseudomonas entomophila str. L4... 204 5e-51
CP000348_1894(CP000348|pid:none) Leptospira borgpetersenii serov... 203 6e-51
CP001616_2197(CP001616|pid:none) Tolumonas auensis DSM 9187, com... 203 8e-51
CP000680_2484(CP000680|pid:none) Pseudomonas mendocina ymp, comp... 203 8e-51
CP000934_1468(CP000934|pid:none) Cellvibrio japonicus Ueda107, c... 202 1e-50
CP000478_3513(CP000478|pid:none) Syntrophobacter fumaroxidans MP... 202 1e-50
CR925677_265(CR925677|pid:none) Ehrlichia ruminantium str. Garde... 201 2e-50
CR767821_274(CR767821|pid:none) Ehrlichia ruminantium strain Wel... 201 2e-50
CR925678_269(CR925678|pid:none) Ehrlichia ruminantium str. Welge... 201 2e-50
AE014296_316(AE014296|pid:none) Drosophila melanogaster chromoso... 201 2e-50
CP000230_1209(CP000230|pid:none) Rhodospirillum rubrum ATCC 1117... 201 2e-50
CR628336_597(CR628336|pid:none) Legionella pneumophila str. Pari... 201 3e-50
CR382138_782(CR382138|pid:none) Debaryomyces hansenii strain CBS... 201 3e-50
CP000158_308(CP000158|pid:none) Hyphomonas neptunium ATCC 15444,... 201 3e-50
AE017354_520(AE017354|pid:none) Legionella pneumophila subsp. pn... 201 3e-50
CP001052_2068(CP001052|pid:none) Burkholderia phytofirmans PsJN ... 201 4e-50
CP000084_233(CP000084|pid:none) Candidatus Pelagibacter ubique H... 201 4e-50
FM992690_76(FM992690|pid:none) Candida dubliniensis CD36 chromos... 200 7e-50
CP000236_793(CP000236|pid:none) Ehrlichia chaffeensis str. Arkan... 200 7e-50
CP000847_241(CP000847|pid:none) Rickettsia akari str. Hartford, ... 200 7e-50
CP001011_784(CP001011|pid:none) Xylella fastidiosa M23, complete... 199 1e-49
CP000383_3307(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334... 199 1e-49
(Q68XI7) RecName: Full=2-oxoglutarate dehydrogenase E1 component... 199 1e-49
(P57388) RecName: Full=2-oxoglutarate dehydrogenase E1 component... 199 1e-49
AM942444_678(AM942444|pid:none) Corynebacterium urealyticum DSM ... 199 1e-49
CP000683_174(CP000683|pid:none) Rickettsia massiliae MTU5, compl... 199 1e-49
CP001157_2875(CP001157|pid:none) Azotobacter vinelandii DJ, comp... 199 1e-49
CP000766_259(CP000766|pid:none) Rickettsia rickettsii str. Iowa,... 199 1e-49
CP001339_78(CP001339|pid:none) Thioalkalivibrio sp. HL-EbGR7, co... 198 2e-49
CP001158_276(CP001158|pid:none) Buchnera aphidicola str. Tuc7 (A... 198 3e-49
CP001161_278(CP001161|pid:none) Buchnera aphidicola str. 5A (Acy... 198 3e-49
CP001275_550(CP001275|pid:none) Thermomicrobium roseum DSM 5159,... 198 3e-49
CR382126_195(CR382126|pid:none) Kluyveromyces lactis strain NRRL... 197 3e-49
CP000282_2102(CP000282|pid:none) Saccharophagus degradans 2-40, ... 197 3e-49
CP000941_820(CP000941|pid:none) Xylella fastidiosa M12, complete... 197 3e-49
BX908798_1090(BX908798|pid:none) Parachlamydia-related symbiont ... 197 3e-49
AE003849_1546(AE003849|pid:none) Xylella fastidiosa 9a5c, comple... 197 4e-49
(P20967) RecName: Full=2-oxoglutarate dehydrogenase E1 component... 197 6e-49
CP001079_267(CP001079|pid:none) Anaplasma marginale str. Florida... 196 7e-49
CP001227_251(CP001227|pid:none) Rickettsia peacockii str. Rustic... 196 7e-49
L36381_1(L36381|pid:none) Neisseria gonorrhoeae sucAB-lpd operon... 196 7e-49
(P20707) RecName: Full=2-oxoglutarate dehydrogenase E1 component... 196 7e-49
CP000685_1250(CP000685|pid:none) Flavobacterium johnsoniae UW101... 196 1e-48
AE002098_922(AE002098|pid:none) Neisseria meningitidis MC58, com... 196 1e-48
AE004969_840(AE004969|pid:none) Neisseria gonorrhoeae FA 1090, c... 196 1e-48
CP001124_698(CP001124|pid:none) Geobacter bemidjiensis Bem, comp... 196 1e-48
AE008922_1464(AE008922|pid:none) Xanthomonas campestris pv. camp... 196 1e-48
DQ115392_12(DQ115392|pid:none) Saccharomyces cerevisiae Vhs2p (V... 196 1e-48
CP000030_274(CP000030|pid:none) Anaplasma marginale str. St. Mar... 195 2e-48
CP000544_1067(CP000544|pid:none) Halorhodospira halophila SL1, c... 195 2e-48
CP000142_3126(CP000142|pid:none) Pelobacter carbinolicus DSM 238... 195 2e-48
CP001620_617(CP001620|pid:none) Corynebacterium kroppenstedtii D... 194 3e-48
AM421808_882(AM421808|pid:none) Neisseria meningitidis serogroup... 194 3e-48
CP000103_851(CP000103|pid:none) Nitrosospira multiformis ATCC 25... 194 3e-48
AB083049_1(AB083049|pid:none) Corynebacterium efficiens odhA gen... 194 3e-48
CP000450_830(CP000450|pid:none) Nitrosomonas eutropha C91, compl... 194 4e-48
FM180568_4370(FM180568|pid:none) Escherichia coli 0127:H6 E2348/... 194 5e-48
AE014075_4927(AE014075|pid:none) Escherichia coli CFT073, comple... 193 6e-48
AE017221_1692(AE017221|pid:none) Thermus thermophilus HB27, comp... 193 6e-48
AE013598_2002(AE013598|pid:none) Xanthomonas oryzae pv. oryzae K... 193 8e-48
CP000967_2825(CP000967|pid:none) Xanthomonas oryzae pv. oryzae P... 192 1e-47
CP000769_820(CP000769|pid:none) Anaeromyxobacter sp. Fw109-5, co... 192 2e-47
CP000089_2830(CP000089|pid:none) Dechloromonas aromatica RCB, co... 192 2e-47
AM420293_6200(AM420293|pid:none) Saccharopolyspora erythraea NRR... 192 2e-47
BX842576_9(BX842576|pid:none) Mycobacterium tuberculosis H37Rv c... 191 4e-47
(A5U1U6) RecName: Full=2-oxoglutarate decarboxylase; EC... 191 4e-47
CP000733_553(CP000733|pid:none) Coxiella burnetii Dugway 5J108-1... 190 7e-47
CP001020_1308(CP001020|pid:none) Coxiella burnetii CbuK_Q154, co... 190 7e-47
CP000975_67(CP000975|pid:none) Methylacidiphilum infernorum V4, ... 189 1e-46
AE014296_314(AE014296|pid:none) Drosophila melanogaster chromoso... 189 1e-46
AX065435_1(AX065435|pid:none) Sequence 561 from Patent WO0100844... 189 2e-46
AX763244_1(AX763244|pid:none) Sequence 61 from Patent WO03040291... 189 2e-46
D84102_1(D84102|pid:none) Corynebacterium glutamicum odhA gene f... 188 2e-46
CP000091_1010(CP000091|pid:none) Ralstonia eutropha JMP134 chrom... 188 3e-46
CP001281_2379(CP001281|pid:none) Thauera sp. MZ1T, complete geno... 187 3e-46
(Q9CC97) RecName: Full=2-oxoglutarate decarboxylase; EC... 187 3e-46
AE016825_1071(AE016825|pid:none) Chromobacterium violaceum ATCC ... 187 3e-46
A87046(A87046) hypothetical protein odhA [imported] - Mycobacter... 187 3e-46
AP009153_390(AP009153|pid:none) Gemmatimonas aurantiaca T-27 DNA... 186 8e-46
CP000359_138(CP000359|pid:none) Deinococcus geothermalis DSM 113... 186 1e-45
CT005272_358(CT005272|pid:none) Leishmania major strain Friedlin... 186 1e-45
AM502254_331(AM502254|pid:none) Leishmania infantum chromosome 36. 186 1e-45
(Q5L172) RecName: Full=2-oxoglutarate dehydrogenase E1 component... 185 2e-45
AP008957_4122(AP008957|pid:none) Rhodococcus erythropolis PR4 DN... 185 2e-45
AM494972_370(AM494972|pid:none) Leishmania braziliensis chromoso... 185 2e-45
CR555306_3821(CR555306|pid:none) Azoarcus sp. EbN1 complete geno... 184 3e-45
AP006618_4713(AP006618|pid:none) Nocardia farcinica IFM 10152 DN... 184 4e-45
CP001022_1671(CP001022|pid:none) Exiguobacterium sibiricum 255-1... 184 5e-45
CU207366_3036(CU207366|pid:none) Gramella forsetii KT0803 comple... 183 6e-45
CP000804_1486(CP000804|pid:none) Roseiflexus castenholzii DSM 13... 183 8e-45
BX294148_254(BX294148|pid:none) Rhodopirellula baltica SH 1 comp... 183 8e-45
CP000854_4131(CP000854|pid:none) Mycobacterium marinum M, comple... 182 1e-44
(A0PVU7) RecName: Full=2-oxoglutarate decarboxylase; EC... 182 1e-44
CP000909_3647(CP000909|pid:none) Chloroflexus aurantiacus J-10-f... 181 2e-44
AP011115_6071(AP011115|pid:none) Rhodococcus opacus B4 DNA, comp... 181 3e-44
(Q5WG56) RecName: Full=2-oxoglutarate dehydrogenase E1 component... 181 4e-44
CP001110_1863(CP001110|pid:none) Pelodictyon phaeoclathratiforme... 181 4e-44
CP000360_3503(CP000360|pid:none) Acidobacteria bacterium Ellin34... 180 7e-44
AE000513_277(AE000513|pid:none) Deinococcus radiodurans R1 chrom... 179 9e-44
AL939123_60(AL939123|pid:none) Streptomyces coelicolor A3(2) com... 179 9e-44
(A8FE66) RecName: Full=2-oxoglutarate dehydrogenase E1 component... 179 1e-43
CP000686_3311(CP000686|pid:none) Roseiflexus sp. RS-1, complete ... 179 2e-43
BX248583_312(BX248583|pid:none) Blochmannia floridanus complete ... 178 3e-43
CP000656_2200(CP000656|pid:none) Mycobacterium gilvum PYR-GCK, c... 177 5e-43
CP001337_3606(CP001337|pid:none) Chloroflexus aggregans DSM 9485... 176 8e-43
DQ062229_1(DQ062229|pid:none) Lysiphlebus testaceipes putative o... 175 2e-42
AM711867_1340(AM711867|pid:none) Clavibacter michiganensis subsp... 174 3e-42
AM502245_52(AM502245|pid:none) Leishmania infantum chromosome 27. 174 5e-42
(A1TDK2) RecName: Full=2-oxoglutarate decarboxylase; EC... 174 5e-42
(A3Q3N5) RecName: Full=2-oxoglutarate decarboxylase; EC... 174 5e-42
CP000803_1443(CP000803|pid:none) Francisella tularensis subsp. h... 173 7e-42
CP000915_119(CP000915|pid:none) Francisella tularensis subsp. me... 173 9e-42
AJ749949_76(AJ749949|pid:none) Francisella tularensis subsp. tul... 173 9e-42
CP000513_309(CP000513|pid:none) Dichelobacter nodosus VCS1703A, ... 172 1e-41
CP000079_89(CP000079|pid:none) Leishmania major strain Friedlin ... 172 1e-41
(A0R2B1) RecName: Full=2-oxoglutarate decarboxylase; EC... 172 1e-41
AP009152_944(AP009152|pid:none) Kocuria rhizophila DC2201 DNA, c... 172 2e-41
AL009126_2011(AL009126|pid:none) Bacillus subtilis subsp. subtil... 171 4e-41
AE016822_1531(AE016822|pid:none) Leifsonia xyli subsp. xyli str.... 170 7e-41
(A7Z5J9) RecName: Full=2-oxoglutarate dehydrogenase E1 component... 170 7e-41
(Q81TK1) RecName: Full=2-oxoglutarate dehydrogenase E1 component... 169 1e-40
CP000820_971(CP000820|pid:none) Frankia sp. EAN1pec, complete ge... 169 1e-40
M27141_1(M27141|pid:none) B.subtilis 2-oxoglutarate dehydrogenas... 169 1e-40
CP001472_49(CP001472|pid:none) Acidobacterium capsulatum ATCC 51... 169 2e-40
(A7GMD4) RecName: Full=2-oxoglutarate dehydrogenase E1 component... 168 2e-40
CP000770_151(CP000770|pid:none) Candidatus Sulcia muelleri GWSS,... 167 4e-40
CP001407_1151(CP001407|pid:none) Bacillus cereus 03BB102, comple... 166 8e-40
CP000485_1048(CP000485|pid:none) Bacillus thuringiensis str. Al ... 166 8e-40
(B7IM94) RecName: Full=2-oxoglutarate dehydrogenase E1 component... 166 1e-39
(Q73BN8) RecName: Full=2-oxoglutarate dehydrogenase E1 component... 166 1e-39
CP000263_170(CP000263|pid:none) Buchnera aphidicola str. Cc (Cin... 165 2e-39
(B7HH19) RecName: Full=2-oxoglutarate dehydrogenase E1 component... 165 2e-39
CP000474_2520(CP000474|pid:none) Arthrobacter aurescens TC1, com... 164 4e-39
CP000454_2623(CP000454|pid:none) Arthrobacter sp. FB24, complete... 164 5e-39
AE001363_364(AE001363|pid:none) Chlamydophila pneumoniae CWL029,... 164 5e-39
CP000481_583(CP000481|pid:none) Acidothermus cellulolyticus 11B ... 163 7e-39
AM889285_1416(AM889285|pid:none) Gluconacetobacter diazotrophicu... 162 2e-38
(Q8CUL8) RecName: Full=2-oxoglutarate dehydrogenase E1 component... 162 2e-38
CR954216_49(CR954216|pid:none) Ostreococcus tauri strain OTTH059... 162 2e-38
BT081967_1(BT081967|pid:none) Drosophila melanogaster AT26694 fu... 160 6e-38
AM295250_1051(AM295250|pid:none) Staphylococcus carnosus subsp. ... 159 1e-37
AM884176_305(AM884176|pid:none) Chlamydia trachomatis strain L2/... 159 1e-37
AE001273_56(AE001273|pid:none) Chlamydia trachomatis D/UW-3/CX, ... 159 1e-37
CP000509_1700(CP000509|pid:none) Nocardioides sp. JS614, complet... 158 2e-37
A32879(S25295;A32879;E69668;S14544) oxoglutarate dehydrogenase (... 157 4e-37
AP006861_587(AP006861|pid:none) Chlamydophila felis Fe/C-56 DNA,... 157 5e-37
CR848038_401(CR848038|pid:none) Chlamydophila abortus strain S26... 155 1e-36
AE015925_413(AE015925|pid:none) Chlamydophila caviae GPIC, compl... 155 2e-36
CP000910_1368(CP000910|pid:none) Renibacterium salmoninarum ATCC... 152 1e-35
(Q8CP83) RecName: Full=2-oxoglutarate dehydrogenase E1 component... 152 2e-35
(Q49XM5) RecName: Full=2-oxoglutarate dehydrogenase E1 component... 151 3e-35
CP001504_1927(CP001504|pid:none) Burkholderia glumae BGR1 chromo... 151 3e-35
(Q4L6C4) RecName: Full=2-oxoglutarate dehydrogenase E1 component... 151 4e-35
(Q6GGZ5) RecName: Full=2-oxoglutarate dehydrogenase E1 component... 147 7e-34
(A6QGW6) RecName: Full=2-oxoglutarate dehydrogenase E1 component... 147 7e-34
(Q8NWR6) RecName: Full=2-oxoglutarate dehydrogenase E1 component... 147 7e-34
BC061232_1(BC061232|pid:none) Mus musculus oxoglutarate dehydrog... 142 1e-32
AY650308_1(AY650308|pid:none) Macaca fascicularis oxoglutarate d... 137 5e-31
A41911(I48884;A41911) oxoglutarate dehydrogenase (lipoamide) (EC... 133 1e-29
AK222082_1(AK222082|pid:none) Arabidopsis thaliana mRNA for 2-ox... 118 3e-25
AY811927_1(AY811927|pid:none) Schistosoma japonicum SJCHGC06980 ... 104 4e-21
AJ293317_1(AJ293317|pid:none) Rickettsia rickettsii sucA gene (p... 102 1e-20
AJ293318_1(AJ293318|pid:none) Rickettsia montanensis sucA gene (... 102 1e-20
AJ293316_1(AJ293316|pid:none) Rickettsia typhi sucA gene (partia... 101 3e-20
BT012340_1(BT012340|pid:none) Drosophila melanogaster AT11348 fu... 94 5e-18
U62965_1(U62965|pid:none) Burkholderia pseudomallei K188 oxoglut... 68 4e-10
EU016631_41(EU016631|pid:none) Uncultured Group I marine crenarc... 35 4.8
A99497(A99497) heterodisulfide reductase related protein [import... 34 6.3
CP001400_2077(CP001400|pid:none) Sulfolobus islandicus M.14.25, ... 34 6.3
AC144617_5(AC144617|pid:none) Medicago truncatula clone mth2-7m9... 34 8.2
BX908798_1394(BX908798|pid:none) Parachlamydia-related symbiont ... 34 8.2
AP008971_1176(AP008971|pid:none) Finegoldia magna ATCC 29328 DNA... 34 8.2
(Q54S20) RecName: Full=Mediator of RNA polymerase II transcripti... 34 8.2

>BC117994_1(BC117994|pid:none) Mus musculus dehydrogenase E1 and
transketolase domain containing 1, mRNA (cDNA clone
MGC:144125 IMAGE:40097991), complete cds.
Length = 921

Score = 260 bits (665), Expect = 4e-68
Identities = 128/251 (50%), Positives = 175/251 (69%), Gaps = 2/251 (0%)
Frame = +2

Query: 143 DQFVTSGESKWLRQSGIVILLPHGFDGAGPEHSSCRIERFLQLSDTEAVNVKDDTLINQE 322
D F++ GE+KWL QSG+VILLPHG+DGAGPEHSSCRIERFLQ+ D+ V DT+
Sbjct: 678 DTFISGGEAKWLLQSGLVILLPHGYDGAGPEHSSCRIERFLQMCDSAEEGVDSDTV---- 733

Query: 323 TNFYFINPSTPANYFHALRRQMIRNYRKPLIVAGPKVLLRHPNCFSTLNEMAPGTHFQTV 502
N + ++P+TPA YFH LRRQMIRN+RKPLIVA PK+LLR+P STL EMAPGT F+ V
Sbjct: 734 -NMFVVHPTTPAQYFHLLRRQMIRNFRKPLIVASPKMLLRYPAAVSTLEEMAPGTAFKPV 792

Query: 503 LSDPDTINNASTIKRVIFCSGKVFYDLQEERKA--KNFNDVAIIRLEQIAPFPYQRIQEE 676
+ D + +K +IFCSGK FY L ++R++ +D AIIRLE++ PFP +Q+E
Sbjct: 793 IGDSSV--DPKNVKTLIFCSGKHFYALLKQRESLGTKKHDFAIIRLEELCPFPLDALQQE 850

Query: 677 INRYSNATKFAWVQEEQQNGGCWSFVEPRFKQRYPQTSQIKYIGRPPLAASAIGISSIHK 856
+++Y + W QEE QN G WSFV PRF+++ +++ + RPPL A A+GI ++H+
Sbjct: 851 MSKYKHVRDVIWSQEEPQNMGPWSFVSPRFEKQL--ACRLRLVSRPPLPAPAVGIGTVHQ 908

Query: 857 KEVSQLLIDAF 889
++ +L F
Sbjct: 909 QQHEDILSKTF 919

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,357,889,415
Number of extensions: 26042460
Number of successful extensions: 60691
Number of sequences better than 10.0: 396
Number of HSP's gapped: 59558
Number of HSP's successfully gapped: 397
Length of query: 314
Length of database: 1,040,966,779
Length adjustment: 128
Effective length of query: 186
Effective length of database: 630,818,299
Effective search space: 117332203614
Effective search space used: 117332203614
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.97 gvh: 0.49 alm: 0.37 top: 0.67 tms: 0.00 mit: 0.26 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
28.0 %: nuclear
8.0 %: mitochondrial
4.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for Contig-U11289-1 is cyt

VS (DIR, S) 0
VH (FL, L) 10
VF (FL, S) 0
AH (FL, L) 1
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 4
SF (FL, S) 1
CH (FL, L) 5
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0