Contig-U11272-1 |
Contig ID |
Contig-U11272-1 |
Contig update |
2002.12.18 |
Contig sequence |
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Gap |
gap included |
Contig length |
2936 |
Chromosome number (1..6, M) |
5 |
Chromosome length |
5062330 |
Start point |
733071 |
End point |
736006 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
26 |
Number of EST |
41 |
Link to clone list |
U11272 |
List of clone(s) |
est1=AHG794F,1,711 est2=AHD476F,191,871 est3=AHD476Z,872,1679 est4=AHO119F,938,1333 est5=AFF576F,967,1419 est6=AHF650F,980,1485 est7=AHD630F,984,1817 est8=AHO539F,1037,1542 est9=AHO774F,1064,1412 est10=AHQ290F,1089,1488 est11=AHD646F,1148,1763 est12=AFC555F,1161,1515 est13=AHP762F,1177,1499 est14=AHP884F,1198,1517 est15=AHJ184E,1218,1817 est16=AFJ261F,1228,1835 est17=AHL413F,1229,1763 est18=CFC675F,1331,2173 est19=AHL420F,1364,2241 est20=SLH423F,1542,2271 est21=AHI229F,1670,1867 est22=AHL413Z,2059,2912 est23=AHF650Z,2128,2898 est24=AFJ261Z,2129,2848 est25=AHD646Z,2131,2854 est26=SLH423Z,2230,2926 est27=CFC675Z,2241,2910 est28=AHD630Z,2263,2924 est29=AFC555Z,2271,2911 est30=AHL420Z,2276,2888 est31=AHQ290Z,2285,2941 est32=AFF576Z,2295,2878 est33=AHH529E,2311,2891 est34=AHB225E,2313,2911 est35=AHP762Z,2337,2896 est36=AHO574Z,2339,2936 est37=AHP722Z,2341,2901 est38=AHH182E,2346,2911 est39=AHO317Z,2348,2936 est40=AHI229Z,2364,2854 est41=AHP884Z,2416,2770
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Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
Query= Contig-U11272-1 (Contig-U11272-1Q) /CSM_Contig/Contig-U11272-1Q.Seq.d (2946 letters)
Database: CSM 6905 sequences; 5,674,871 total letters
Score E Sequences producing significant alignments: (bits) Value
Contig-U11272-1 (Contig-U11272-1Q) /CSM_Contig/Conti... 1859 0.0 Contig-U11830-1 (Contig-U11830-1Q) /CSM_Contig/Conti... 50 1e-05 Contig-U01212-1 (Contig-U01212-1Q) /CSM_Contig/Conti... 40 0.013 Contig-U13692-1 (Contig-U13692-1Q) /CSM_Contig/Conti... 38 0.053 Contig-U12751-1 (Contig-U12751-1Q) /CSM_Contig/Conti... 38 0.053 Contig-U11968-1 (Contig-U11968-1Q) /CSM_Contig/Conti... 38 0.053 Contig-U11921-1 (Contig-U11921-1Q) /CSM_Contig/Conti... 38 0.053 Contig-U11511-1 (Contig-U11511-1Q) /CSM_Contig/Conti... 38 0.053 Contig-U10318-1 (Contig-U10318-1Q) /CSM_Contig/Conti... 38 0.053 Contig-U04634-1 (Contig-U04634-1Q) /CSM_Contig/Conti... 38 0.053
>Contig-U11272-1 (Contig-U11272-1Q) /CSM_Contig/Contig-U11272-1Q.Seq.d Length = 2946
Score = 1859 bits (938), Expect = 0.0 Identities = 938/938 (100%) Strand = Plus / Plus
Query: 1879 ggtacaagtggttttatctctggagcaggtagtatcgctggtggattatcaattggtaat 1938 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1879 ggtacaagtggttttatctctggagcaggtagtatcgctggtggattatcaattggtaat 1938
Query: 1939 agtggatcagtagcccggaataacaactcaatcaggaagtttaactggtgcaaatacagt 1998 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1939 agtggatcagtagcccggaataacaactcaatcaggaagtttaactggtgcaaatacagt 1998
Query: 1999 agcagcagtaacaacagccaactcaattggatccaaaacatcaataactggtgtttcatc 2058 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1999 agcagcagtaacaacagccaactcaattggatccaaaacatcaataactggtgtttcatc 2058
Query: 2059 aattggagcaatttcaggttcaattgatggattaacaactgcaaactcattaactggtat 2118 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2059 aattggagcaatttcaggttcaattgatggattaacaactgcaaactcattaactggtat 2118
Query: 2119 atcatcaatcgctggtataactaatcaagcatcatcaatcgccaatgcaatttcaggtgg 2178 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2119 atcatcaatcgctggtataactaatcaagcatcatcaatcgccaatgcaatttcaggtgg 2178
Query: 2179 taatattgcaggtgtaactacatctcaaagttcaactggtttgacatcatcagtatcaat 2238 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2179 taatattgcaggtgtaactacatctcaaagttcaactggtttgacatcatcagtatcaat 2238
Query: 2239 tgcatcctctggccaaagttcaattggtattacttctggagttatctcaggaggcaacag 2298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2239 tgcatcctctggccaaagttcaattggtattacttctggagttatctcaggaggcaacag 2298
Query: 2299 tgttacaggaggatcaggatcagtcggaaatagtggttcaattactggtttaacaacaac 2358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2299 tgttacaggaggatcaggatcagtcggaaatagtggttcaattactggtttaacaacaac 2358
Query: 2359 aactggtggaataagcggaggtaatgctatcgcaggtgtaacaacttcaaattcaatcgt 2418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2359 aactggtggaataagcggaggtaatgctatcgcaggtgtaacaacttcaaattcaatcgt 2418
Query: 2419 tcaaactggatcagttacaggcttaactgccaatggtattgcaggatcagtcggaggatt 2478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2419 tcaaactggatcagttacaggcttaactgccaatggtattgcaggatcagtcggaggatt 2478
Query: 2479 tacaacagcaaactcattaacaggagcaggttcaattagtaatattgccaatgcaatttc 2538 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2479 tacaacagcaaactcattaacaggagcaggttcaattagtaatattgccaatgcaatttc 2538
Query: 2539 aactggtcttgtcggtcaaatcacaacatcgaaatcaacaacatcagctcaaggtacagg 2598 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2539 aactggtcttgtcggtcaaatcacaacatcgaaatcaacaacatcagctcaaggtacagg 2598
Query: 2599 tggactcactactggcagtggtttgataggttctacaaatccaaccaaaaaaccatcttt 2658 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2599 tggactcactactggcagtggtttgataggttctacaaatccaaccaaaaaaccatcttt 2658
Query: 2659 tagctccattggcttcatttctggtagttttaaaatgaatgatgataaaccattcatttt 2718 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2659 tagctccattggcttcatttctggtagttttaaaatgaatgatgataaaccattcatttt 2718
Query: 2719 tgaaaatgataaagttgataaaaaagatattgttaaagaagtacctcgaaatcaaagccc 2778 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2719 tgaaaatgataaagttgataaaaaagatattgttaaagaagtacctcgaaatcaaagccc 2778
Query: 2779 agcttttagtgaaaattaatatctgtgactttatgtcc 2816 |||||||||||||||||||||||||||||||||||||| Sbjct: 2779 agcttttagtgaaaattaatatctgtgactttatgtcc 2816
Score = 1437 bits (725), Expect = 0.0 Identities = 725/725 (100%) Strand = Plus / Plus
Query: 1100 tatccagtcaagctacaagtggctttatttctggagcaggtagtatcgctggtggattat 1159 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1100 tatccagtcaagctacaagtggctttatttctggagcaggtagtatcgctggtggattat 1159
Query: 1160 caattggtaatagtggatcagtagccggaataacaactcaatcaggaagcttaactggtg 1219 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1160 caattggtaatagtggatcagtagccggaataacaactcaatcaggaagcttaactggtg 1219
Query: 1220 caaatacagtagcagcagtaacaacagccaactcaattggatccaaaacatcaataactg 1279 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1220 caaatacagtagcagcagtaacaacagccaactcaattggatccaaaacatcaataactg 1279
Query: 1280 gtgtttcatcaattggagcaatttcaggttcaattgatggattaacaactgcaaactcat 1339 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1280 gtgtttcatcaattggagcaatttcaggttcaattgatggattaacaactgcaaactcat 1339
Query: 1340 taactggtgtgtcatcaatcgctggtataactaatcaagcatcatcaatcgccaatgcaa 1399 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1340 taactggtgtgtcatcaatcgctggtataactaatcaagcatcatcaatcgccaatgcaa 1399
Query: 1400 tttcaggtggtaatattgcaggtgtaactacatctcaaatttcaaccggtattatttcag 1459 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1400 tttcaggtggtaatattgcaggtgtaactacatctcaaatttcaaccggtattatttcag 1459
Query: 1460 gagtaatcgcaggaggatctggatcaattacatctccacaatctataactggccaaagtt 1519 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1460 gagtaatcgcaggaggatctggatcaattacatctccacaatctataactggccaaagtt 1519
Query: 1520 caaccagtattatttcaggagtaatttcaggagttatctctggaggtaatagtgtcgcag 1579 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1520 caaccagtattatttcaggagtaatttcaggagttatctctggaggtaatagtgtcgcag 1579
Query: 1580 gaggatcaggatcagtcggaaatagtggttcaattactggtttaacaacaaatggtggaa 1639 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1580 gaggatcaggatcagtcggaaatagtggttcaattactggtttaacaacaaatggtggaa 1639
Query: 1640 taagtggaggtaatgctatcgcaggcgtaacaacttcaaattcaatcgctcaaactggat 1699 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1640 taagtggaggtaatgctatcgcaggcgtaacaacttcaaattcaatcgctcaaactggat 1699
Query: 1700 cagttacaggattaactgcaaatggtattgcaggatcagtcggaggtttaacaacagcaa 1759 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1700 cagttacaggattaactgcaaatggtattgcaggatcagtcggaggtttaacaacagcaa 1759
Query: 1760 actcattaacaggagtaggttcaattggtaatatcgccaatgcaatttcaactggtcttg 1819 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1760 actcattaacaggagtaggttcaattggtaatatcgccaatgcaatttcaactggtcttg 1819
Query: 1820 tcggt 1824 ||||| Sbjct: 1820 tcggt 1824
Score = 1336 bits (674), Expect = 0.0 Identities = 716/716 (100%) Strand = Plus / Plus
Query: 345 cggttctttgactactggcccttcacaaagtactggtccttcaacaactacaactactgg 404 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 345 cggttctttgactactggcccttcacaaagtactggtccttcaacaactacaactactgg 404
Query: 405 tggatcacaaagtactggtgtttcaacgaccataacaagtggatcacaaagtactggtgc 464 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 405 tggatcacaaagtactggtgtttcaacgaccataacaagtggatcacaaagtactggtgc 464
Query: 465 atcaacaactgccacagctagtggatcacaaagtactagcgcatcaacaactgccacagc 524 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 465 atcaacaactgccacagctagtggatcacaaagtactagcgcatcaacaactgccacagc 524
Query: 525 tagtggttcacaaagtactggtgcatcaactgccacaactagtggaggaagcactggatt 584 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 525 tagtggttcacaaagtactggtgcatcaactgccacaactagtggaggaagcactggatt 584
Query: 585 tatttccggagcttcaacaacttcaatgtcaacaacaacagcaacaggtagtattccaac 644 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 585 tatttccggagcttcaacaacttcaatgtcaacaacaacagcaacaggtagtattccaac 644
Query: 645 aactggatcacaaacctctacatcaggatcatacacaacaactggatcacaaacctctac 704 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 645 aactggatcacaaacctctacatcaggatcatacacaacaactggatcacaaacctctac 704
Query: 705 ttcaggaacatacacaacaactggatcacaaacttncacttcaggaacatacacaacaac 764 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 705 ttcaggaacatacacaacaactggatcacaaacttncacttcaggaacatacacaacaac 764
Query: 765 cggatcacaaacttncacttcaggaacatacactacaacaactaaaccatntacaactac 824 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 765 cggatcacaaacttncacttcaggaacatacactacaacaactaaaccatntacaactac 824
Query: 825 tggtgggaggaagcactggattcctatcagggagctttcaacaacttnnnnnnnnnntat 884 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 825 tggtgggaggaagcactggattcctatcagggagctttcaacaacttnnnnnnnnnntat 884
Query: 885 tgcaggtgtaccaacttcaaattccaatcgctcaaactggatcaattacaggnttaattg 944 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 885 tgcaggtgtaccaacttcaaattccaatcgctcaaactggatcaattacaggnttaattg 944
Query: 945 ccaatggtattgcaggatcagtcggaggattaacaacagcaaactcattaacaggagtag 1004 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 945 ccaatggtattgcaggatcagtcggaggattaacaacagcaaactcattaacaggagtag 1004
Query: 1005 gttcaattggtaatatcgccaaatgcaatttcaactggtgcttgtcggtcaaatcc 1060 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1005 gttcaattggtaatatcgccaaatgcaatttcaactggtgcttgtcggtcaaatcc 1060
Score = 607 bits (306), Expect = e-173 Identities = 334/342 (97%), Gaps = 1/342 (0%) Strand = Plus / Plus
Query: 1105 agtcaagctacaagtggctttatttctggagcaggtagtatcgctggtggattatcaatt 1164 ||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct: 1873 agtcaaggtacaagtggttttatctctggagcaggtagtatcgctggtggattatcaatt 1932
Query: 1165 ggtaatagtggatcagtagcc-ggaataacaactcaatcaggaagcttaactggtgcaaa 1223 ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct: 1933 ggtaatagtggatcagtagcccggaataacaactcaatcaggaagtttaactggtgcaaa 1992
Query: 1224 tacagtagcagcagtaacaacagccaactcaattggatccaaaacatcaataactggtgt 1283 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1993 tacagtagcagcagtaacaacagccaactcaattggatccaaaacatcaataactggtgt 2052
Query: 1284 ttcatcaattggagcaatttcaggttcaattgatggattaacaactgcaaactcattaac 1343 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2053 ttcatcaattggagcaatttcaggttcaattgatggattaacaactgcaaactcattaac 2112
Query: 1344 tggtgtgtcatcaatcgctggtataactaatcaagcatcatcaatcgccaatgcaatttc 1403 |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2113 tggtatatcatcaatcgctggtataactaatcaagcatcatcaatcgccaatgcaatttc 2172
Query: 1404 aggtggtaatattgcaggtgtaactacatctcaaatttcaac 1445 ||||||||||||||||||||||||||||||||||| |||||| Sbjct: 2173 aggtggtaatattgcaggtgtaactacatctcaaagttcaac 2214
Score = 599 bits (302), Expect = e-171 Identities = 327/334 (97%), Gaps = 1/334 (0%) Strand = Plus / Plus
Query: 1881 tacaagtggttttatctctggagcaggtagtatcgctggtggattatcaattggtaatag 1940 ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1113 tacaagtggctttatttctggagcaggtagtatcgctggtggattatcaattggtaatag 1172
Query: 1941 tggatcagtagcccggaataacaactcaatcaggaagtttaactggtgcaaatacagtag 2000 ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 1173 tggatcagtagcc-ggaataacaactcaatcaggaagcttaactggtgcaaatacagtag 1231
Query: 2001 cagcagtaacaacagccaactcaattggatccaaaacatcaataactggtgtttcatcaa 2060 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1232 cagcagtaacaacagccaactcaattggatccaaaacatcaataactggtgtttcatcaa 1291
Query: 2061 ttggagcaatttcaggttcaattgatggattaacaactgcaaactcattaactggtatat 2120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct: 1292 ttggagcaatttcaggttcaattgatggattaacaactgcaaactcattaactggtgtgt 1351
Query: 2121 catcaatcgctggtataactaatcaagcatcatcaatcgccaatgcaatttcaggtggta 2180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1352 catcaatcgctggtataactaatcaagcatcatcaatcgccaatgcaatttcaggtggta 1411
Query: 2181 atattgcaggtgtaactacatctcaaagttcaac 2214 ||||||||||||||||||||||||||| |||||| Sbjct: 1412 atattgcaggtgtaactacatctcaaatttcaac 1445
Score = 571 bits (288), Expect = e-162 Identities = 288/288 (100%) Strand = Plus / Plus
Query: 1 ggacaaggcactttatcagtttcaggggtacaaccatcaaataattcgggtatacctcca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 ggacaaggcactttatcagtttcaggggtacaaccatcaaataattcgggtatacctcca 60
Query: 61 attgttctcactagagatcattcaaaagcttttattacaagtatgggaaatccaaccaca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 attgttctcactagagatcattcaaaagcttttattacaagtatgggaaatccaaccaca 120
Query: 121 attaactatcagatcttggctccattcattaatgtatcttcaattcatatttcttattca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 attaactatcagatcttggctccattcattaatgtatcttcaattcatatttcttattca 180
Query: 181 actttatccgattctcaatacgtattttatgcacttttccaatgtccaaaaccaaccagt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 actttatccgattctcaatacgtattttatgcacttttccaatgtccaaaaccaaccagt 240
Query: 241 gatattgaaccaacctgtgaacctggatgcatgacaagtggaactact 288 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 gatattgaaccaacctgtgaacctggatgcatgacaagtggaactact 288
Score = 430 bits (217), Expect = e-120 Identities = 282/303 (93%), Gaps = 3/303 (0%) Strand = Plus / Plus
Query: 2276 ggagttatctcaggaggcaacagtgttacaggaggatcaggatcagtcggaaatagtggt 2335 ||||||||||| ||||| || ||||| |||||||||||||||||||||||||||||||| Sbjct: 1549 ggagttatctctggaggtaatagtgtcgcaggaggatcaggatcagtcggaaatagtggt 1608
Query: 2336 tcaattactggtttaacaacaacaactggtggaataagcggaggtaatgctatcgcaggt 2395 |||||||||||||||||||||| |||||||||||| |||||||||||||||||||| Sbjct: 1609 tcaattactggtttaacaacaaa---tggtggaataagtggaggtaatgctatcgcaggc 1665
Query: 2396 gtaacaacttcaaattcaatcgttcaaactggatcagttacaggcttaactgccaatggt 2455 |||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||| Sbjct: 1666 gtaacaacttcaaattcaatcgctcaaactggatcagttacaggattaactgcaaatggt 1725
Query: 2456 attgcaggatcagtcggaggatttacaacagcaaactcattaacaggagcaggttcaatt 2515 |||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||| Sbjct: 1726 attgcaggatcagtcggaggtttaacaacagcaaactcattaacaggagtaggttcaatt 1785
Query: 2516 agtaatattgccaatgcaatttcaactggtcttgtcggtcaaatcacaacatcgaaatca 2575 ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| || Sbjct: 1786 ggtaatatcgccaatgcaatttcaactggtcttgtcggtcaaatcacaacatcaaaacca 1845
Query: 2576 aca 2578 ||| Sbjct: 1846 aca 1848
Score = 398 bits (201), Expect = e-110 Identities = 260/279 (93%), Gaps = 3/279 (1%) Strand = Plus / Plus
Query: 1549 ggagttatctctggaggtaatagtgtcgcaggaggatcaggatcagtcggaaatagtggt 1608 ||||||||||| ||||| || ||||| |||||||||||||||||||||||||||||||| Sbjct: 2276 ggagttatctcaggaggcaacagtgttacaggaggatcaggatcagtcggaaatagtggt 2335
Query: 1609 tcaattactggtttaacaacaaa---tggtggaataagtggaggtaatgctatcgcaggc 1665 |||||||||||||||||||||| |||||||||||| |||||||||||||||||||| Sbjct: 2336 tcaattactggtttaacaacaacaactggtggaataagcggaggtaatgctatcgcaggt 2395
Query: 1666 gtaacaacttcaaattcaatcgctcaaactggatcagttacaggattaactgcaaatggt 1725 |||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||| Sbjct: 2396 gtaacaacttcaaattcaatcgttcaaactggatcagttacaggcttaactgccaatggt 2455
Query: 1726 attgcaggatcagtcggaggtttaacaacagcaaactcattaacaggagtaggttcaatt 1785 |||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||| Sbjct: 2456 attgcaggatcagtcggaggatttacaacagcaaactcattaacaggagcaggttcaatt 2515
Query: 1786 ggtaatatcgccaatgcaatttcaactggtcttgtcggt 1824 ||||||| |||||||||||||||||||||||||||||| Sbjct: 2516 agtaatattgccaatgcaatttcaactggtcttgtcggt 2554
Score = 244 bits (123), Expect = 5e-64 Identities = 164/174 (94%), Gaps = 3/174 (1%) Strand = Plus / Plus
Query: 886 gcaggtgtaccaacttcaaattccaatcgctcaaactggatcaattacaggnttaattgc 945 ||||| ||| ||||||||||||| ||||||||||||||||||| ||||||| |||| ||| Sbjct: 1660 gcaggcgtaacaacttcaaattc-aatcgctcaaactggatcagttacaggattaactgc 1718
Query: 946 caatggtattgcaggatcagtcggaggattaacaacagcaaactcattaacaggagtagg 1005 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 1719 aaatggtattgcaggatcagtcggaggtttaacaacagcaaactcattaacaggagtagg 1778
Query: 1006 ttcaattggtaatatcgccaaatgcaatttcaactggtgcttgtcggtcaaatc 1059 ||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct: 1779 ttcaattggtaatatcgcc-aatgcaatttcaactggt-cttgtcggtcaaatc 1830
Score = 242 bits (122), Expect = 2e-63 Identities = 178/193 (92%), Gaps = 3/193 (1%) Strand = Plus / Plus
Query: 2390 gcaggtgtaacaacttcaaattc-aatcgttcaaactggatcagttacaggcttaactgc 2448 ||||||||| ||||||||||||| ||||| ||||||||||||| ||||||| |||| ||| Sbjct: 886 gcaggtgtaccaacttcaaattccaatcgctcaaactggatcaattacaggnttaattgc 945
Query: 2449 caatggtattgcaggatcagtcggaggatttacaacagcaaactcattaacaggagcagg 2508 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| Sbjct: 946 caatggtattgcaggatcagtcggaggattaacaacagcaaactcattaacaggagtagg 1005
Query: 2509 ttcaattagtaatattgcc-aatgcaatttcaactggt-cttgtcggtcaaatcacaaca 2566 ||||||| ||||||| ||| |||||||||||||||||| ||||||||||||||| ||||| Sbjct: 1006 ttcaattggtaatatcgccaaatgcaatttcaactggtgcttgtcggtcaaatcccaaca 1065
Query: 2567 tcgaaatcaacaa 2579 || ||| |||||| Sbjct: 1066 tcaaaaccaacaa 1078
Score = 232 bits (117), Expect = 2e-60 Identities = 158/168 (94%), Gaps = 3/168 (1%) Strand = Plus / Plus
Query: 1660 gcaggcgtaacaacttcaaattc-aatcgctcaaactggatcagttacaggattaactgc 1718 ||||| ||| ||||||||||||| ||||||||||||||||||| ||||||| |||| ||| Sbjct: 886 gcaggtgtaccaacttcaaattccaatcgctcaaactggatcaattacaggnttaattgc 945
Query: 1719 aaatggtattgcaggatcagtcggaggtttaacaacagcaaactcattaacaggagtagg 1778 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 946 caatggtattgcaggatcagtcggaggattaacaacagcaaactcattaacaggagtagg 1005
Query: 1779 ttcaattggtaatatcgcc-aatgcaatttcaactggt-cttgtcggt 1824 ||||||||||||||||||| |||||||||||||||||| ||||||||| Sbjct: 1006 ttcaattggtaatatcgccaaatgcaatttcaactggtgcttgtcggt 1053
Score = 228 bits (115), Expect = 3e-59 Identities = 162/174 (93%), Gaps = 3/174 (1%) Strand = Plus / Plus
Query: 886 gcaggtgtaccaacttcaaattccaatcgctcaaactggatcaattacaggnttaattgc 945 ||||||||| ||||||||||||| ||||| ||||||||||||| ||||||| |||| ||| Sbjct: 2390 gcaggtgtaacaacttcaaattc-aatcgttcaaactggatcagttacaggcttaactgc 2448
Query: 946 caatggtattgcaggatcagtcggaggattaacaacagcaaactcattaacaggagtagg 1005 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| Sbjct: 2449 caatggtattgcaggatcagtcggaggatttacaacagcaaactcattaacaggagcagg 2508
Query: 1006 ttcaattggtaatatcgccaaatgcaatttcaactggtgcttgtcggtcaaatc 1059 ||||||| ||||||| ||| |||||||||||||||||| ||||||||||||||| Sbjct: 2509 ttcaattagtaatattgcc-aatgcaatttcaactggt-cttgtcggtcaaatc 2560
Score = 44.1 bits (22), Expect = 9e-04 Identities = 25/26 (96%) Strand = Plus / Plus
Query: 971 ggattaacaacagcaaactcattaac 996 ||||||||||| |||||||||||||| Sbjct: 2087 ggattaacaactgcaaactcattaac 2112
Score = 44.1 bits (22), Expect = 9e-04 Identities = 25/26 (96%) Strand = Plus / Plus
Query: 1318 ggattaacaactgcaaactcattaac 1343 ||||||||||| |||||||||||||| Sbjct: 971 ggattaacaacagcaaactcattaac 996
Score = 44.1 bits (22), Expect = 9e-04 Identities = 25/26 (96%) Strand = Plus / Plus
Query: 2087 ggattaacaactgcaaactcattaac 2112 ||||||||||| |||||||||||||| Sbjct: 971 ggattaacaacagcaaactcattaac 996
Score = 44.1 bits (22), Expect = 9e-04 Identities = 25/26 (96%) Strand = Plus / Plus
Query: 971 ggattaacaacagcaaactcattaac 996 ||||||||||| |||||||||||||| Sbjct: 1318 ggattaacaactgcaaactcattaac 1343
Score = 38.2 bits (19), Expect = 0.053 Identities = 22/23 (95%) Strand = Plus / Plus
Query: 1747 ttaacaacagcaaactcattaac 1769 |||||||| |||||||||||||| Sbjct: 2090 ttaacaactgcaaactcattaac 2112
Score = 38.2 bits (19), Expect = 0.053 Identities = 22/23 (95%) Strand = Plus / Plus
Query: 2090 ttaacaactgcaaactcattaac 2112 |||||||| |||||||||||||| Sbjct: 1747 ttaacaacagcaaactcattaac 1769
Score = 36.2 bits (18), Expect = 0.21 Identities = 24/26 (92%) Strand = Plus / Plus
Query: 2474 ggatttacaacagcaaactcattaac 2499 ||||| ||||| |||||||||||||| Sbjct: 1318 ggattaacaactgcaaactcattaac 1343
Score = 36.2 bits (18), Expect = 0.21 Identities = 24/26 (92%) Strand = Plus / Plus
Query: 1318 ggattaacaactgcaaactcattaac 1343 ||||| ||||| |||||||||||||| Sbjct: 2474 ggatttacaacagcaaactcattaac 2499
Score = 36.2 bits (18), Expect = 0.21 Identities = 18/18 (100%) Strand = Plus / Plus
Query: 1792 atcgccaatgcaatttca 1809 |||||||||||||||||| Sbjct: 2156 atcgccaatgcaatttca 2173
Score = 36.2 bits (18), Expect = 0.21 Identities = 18/18 (100%) Strand = Plus / Plus
Query: 2156 atcgccaatgcaatttca 2173 |||||||||||||||||| Sbjct: 1792 atcgccaatgcaatttca 1809
Score = 34.2 bits (17), Expect = 0.83 Identities = 38/45 (84%) Strand = Plus / Plus
Query: 1508 ctggccaaagttcaaccagtattatttcaggagtaatttcaggag 1552 ||||||||||||||| |||||| ||| ||||| || ||||||| Sbjct: 2247 ctggccaaagttcaattggtattacttctggagttatctcaggag 2291
Score = 34.2 bits (17), Expect = 0.83 Identities = 38/45 (84%) Strand = Plus / Plus
Query: 2247 ctggccaaagttcaattggtattacttctggagttatctcaggag 2291 ||||||||||||||| |||||| ||| ||||| || ||||||| Sbjct: 1508 ctggccaaagttcaaccagtattatttcaggagtaatttcaggag 1552
Score = 34.2 bits (17), Expect = 0.83 Identities = 17/17 (100%) Strand = Plus / Plus
Query: 614 caacaacaacagcaaca 630 ||||||||||||||||| Sbjct: 311 caacaacaacagcaaca 327
Score = 32.2 bits (16), Expect = 3.3 Identities = 25/28 (89%) Strand = Plus / Plus
Query: 2574 caacaacatcagctcaaggtacaggtgg 2601 ||||||||||| |||||||||| |||| Sbjct: 1862 caacaacatcaagtcaaggtacaagtgg 1889
>Contig-U11830-1 (Contig-U11830-1Q) /CSM_Contig/Contig-U11830-1Q.Seq.d Length = 971
Score = 50.1 bits (25), Expect = 1e-05 Identities = 31/33 (93%) Strand = Plus / Plus
Query: 599 caacaacttcaatgtcaacaacaacagcaacag 631 |||||||||||| ||||||||||||||||||| Sbjct: 732 caacaacttcaacatcaacaacaacagcaacag 764
>Contig-U01212-1 (Contig-U01212-1Q) /CSM_Contig/Contig-U01212-1Q.Seq.d Length = 1218
Score = 40.1 bits (20), Expect = 0.013 Identities = 20/20 (100%) Strand = Plus / Plus
Query: 383 cttcaacaactacaactact 402 |||||||||||||||||||| Sbjct: 169 cttcaacaactacaactact 188
Database: CSM Posted date: Jun 9, 2004 7:35 PM Number of letters in database: 5,674,871 Number of sequences in database: 6905 Lambda K H 1.37 0.711 1.31
Gapped Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 36,364 Number of Sequences: 6905 Number of extensions: 36364 Number of successful extensions: 5972 Number of sequences better than 10.0: 234 length of query: 2946 length of database: 5,674,871 effective HSP length: 17 effective length of query: 2929 effective length of database: 5,557,486 effective search space: 16277876494 effective search space used: 16277876494 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 16 (32.2 bits)
|
dna update |
2008.11.23 |
Homology vs DNA |
Query= Contig-U11272-1 (Contig-U11272-1Q) /CSM_Contig/Contig-U11272-1Q.Seq.d (2946 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ354283) Dictyostelium discoideum cDNA clone:dda53j04, 3' ... 1392 0.0 1 (BJ344518) Dictyostelium discoideum cDNA clone:dda19i16, 3' ... 1328 0.0 1 (BJ350013) Dictyostelium discoideum cDNA clone:dda38k12, 3' ... 1312 0.0 1 (BJ351237) Dictyostelium discoideum cDNA clone:dda42c14, 3' ... 1296 0.0 1 (BJ374161) Dictyostelium discoideum cDNA clone:ddc6e20, 3' e... 1114 0.0 1 (BJ341441) Dictyostelium discoideum cDNA clone:dda6m13, 3' e... 1063 0.0 1 (BJ327205) Dictyostelium discoideum cDNA clone:dda19i16, 5' ... 1035 0.0 1 (BJ331992) Dictyostelium discoideum cDNA clone:dda37h20, 5' ... 1027 0.0 1 (AU040006) Dictyostelium discoideum slug cDNA, clone SLH423. 854 0.0 2 (BJ336204) Dictyostelium discoideum cDNA clone:dda53h06, 5' ... 797 0.0 7 (AU062062) Dictyostelium discoideum slug cDNA, clone SLH423. 743 0.0 3 (BJ334041) Dictyostelium discoideum cDNA clone:dda44l23, 5' ... 728 0.0 2 (BJ357508) Dictyostelium discoideum cDNA clone:dda63c24, 3' ... 1009 0.0 1 (BJ354273) Dictyostelium discoideum cDNA clone:dda53h06, 3' ... 1009 0.0 1 (BJ350009) Dictyostelium discoideum cDNA clone:dda38k08, 3' ... 726 0.0 2 (BJ332224) Dictyostelium discoideum cDNA clone:dda38k08, 5' ... 821 0.0 7 (BJ349848) Dictyostelium discoideum cDNA clone:dda37h20, 3' ... 706 0.0 4 (BJ340373) Dictyostelium discoideum cDNA clone:dda12g19, 3' ... 591 0.0 4 (BJ336213) Dictyostelium discoideum cDNA clone:dda53j04, 5' ... 607 0.0 2 (BJ357161) Dictyostelium discoideum cDNA clone:dda62l15, 3' ... 926 0.0 1 (BJ356576) Dictyostelium discoideum cDNA clone:dda60c19, 3' ... 922 0.0 1 (BJ352317) Dictyostelium discoideum cDNA clone:dda46i07, 3' ... 914 0.0 1 (BJ360572) Dictyostelium discoideum cDNA clone:ddc6e20, 5' e... 557 0.0 8 (BJ357008) Dictyostelium discoideum cDNA clone:dda62l05, 3' ... 904 0.0 1 (BJ348436) Dictyostelium discoideum cDNA clone:dda33a08, 3' ... 902 0.0 1 (BJ352140) Dictyostelium discoideum cDNA clone:dda45c21, 3' ... 890 0.0 1 (BJ352625) Dictyostelium discoideum cDNA clone:dda47i08, 3' ... 872 0.0 1 (BJ356026) Dictyostelium discoideum cDNA clone:dda59b05, 3' ... 868 0.0 1 (BJ338181) Dictyostelium discoideum cDNA clone:dda60m09, 5' ... 862 0.0 1 (BJ332228) Dictyostelium discoideum cDNA clone:dda38k12, 5' ... 630 0.0 4 (BJ333377) Dictyostelium discoideum cDNA clone:dda42c14, 5' ... 690 0.0 3 (BJ335337) Dictyostelium discoideum cDNA clone:dda49g21, 5' ... 519 0.0 3 (BJ339000) Dictyostelium discoideum cDNA clone:dda63c24, 5' ... 706 0.0 1 (BJ357225) Dictyostelium discoideum cDNA clone:dda62h22, 3' ... 680 0.0 1 (BJ323903) Dictyostelium discoideum cDNA clone:dda12g19, 5' ... 597 0.0 3 (BJ324513) Dictyostelium discoideum cDNA clone:dda6m13, 5' e... 648 0.0 1 (BJ338285) Dictyostelium discoideum cDNA clone:dda60d19, 5' ... 640 e-179 1 (BJ353346) Dictyostelium discoideum cDNA clone:dda49g21, 3' ... 609 e-169 1 (BJ337809) Dictyostelium discoideum cDNA clone:dda59e05, 5' ... 452 e-164 3 (BJ338743) Dictyostelium discoideum cDNA clone:dda62h22, 5' ... 557 e-154 1 (BJ338698) Dictyostelium discoideum cDNA clone:dda62l15, 5' ... 547 e-151 1 (BJ330918) Dictyostelium discoideum cDNA clone:dda33a08, 5' ... 412 e-110 1 (BJ334430) Dictyostelium discoideum cDNA clone:dda46i07, 5' ... 394 e-109 2 (BJ334280) Dictyostelium discoideum cDNA clone:dda45c21, 5' ... 309 3e-79 1 (BJ334662) Dictyostelium discoideum cDNA clone:dda47i08, 5' ... 258 1e-63 1 (ET238846) S0177P09_SP6 CHORI-214 Salmo salar genomic clone ... 32 1e-04 3 (EJ667656) 1092955047297 Global-Ocean-Sampling_GS-30-02-01-1... 52 0.12 1 (EJ540931) 1092955372455 Global-Ocean-Sampling_GS-29-01-01-1... 52 0.12 1 (AU269308) Dictyostelium discoideum vegetative cDNA clone:VS... 40 0.20 3 (FK719081) pl_004-A7 Ilyanassa (snail) 0-48h Ilyanassa obsol... 28 0.31 3 (FK715023) pl_019-G3 Ilyanassa (snail) 0-48h Ilyanassa obsol... 28 0.31 3 (FK714621) pl_001-B2 Ilyanassa (snail) 0-48h Ilyanassa obsol... 28 0.31 3 (FK714068) pl_091-E12 Ilyanassa (snail) 0-48h Ilyanassa obso... 28 0.32 3 (AY913959) Hylaeus leptocephalus isolate H_bis_109 cytochrom... 40 0.49 2 (AU039777) Dictyostelium discoideum slug cDNA, clone SLG393. 50 0.49 1 (BJ382386) Dictyostelium discoideum cDNA clone:ddc44g14, 3' ... 50 0.49 1 (AC096997) Takifugu rubripes clone 217A23, complete sequence. 38 0.71 3 (AC096684) Takifugu rubripes clone 241N7, complete sequence. 38 0.87 3 (CX155596) TfEST049E01 Tf30924 cDNA Library Tritrichomonas f... 34 0.98 3 (AM543998) Paracentrotus lividus EST, clone MPMGp1171E21116Q... 38 1.2 2 (DH421723) Oryzias latipes Fosmid clone:GOLWFno834_i24, forw... 36 1.8 2 (BX005345) Mouse DNA sequence from clone RP23-344C21 on chro... 48 1.9 1 (DJ375726) Identification of Essential Genes in Prokaryotes. 48 1.9 1 (BD426631) The Nucleotide Sequence of the Haemophilus influe... 48 1.9 1 (BD424941) The Nucleotide Sequence of the Haemophilus influe... 48 1.9 1 (AX395051) Sequence 25 from Patent WO0218601. 48 1.9 1 (AX083990) Sequence 25 from Patent WO0111033. 48 1.9 1 (AR632719) Sequence 1 from patent US 6846651. 48 1.9 1 (AR274513) Sequence 1 from patent US 6506581. 48 1.9 1 (AC117351) Rattus norvegicus clone CH230-81E16, WORKING DRAF... 48 1.9 1 (AC114033) Rattus norvegicus clone CH230-45E21, WORKING DRAF... 48 1.9 1 (AC108841) Mus musculus clone RP23-351H9, WORKING DRAFT SEQU... 48 1.9 1 (DH067761) Oryzias latipes Fosmid clone:GOLWFno128_i06, reve... 48 1.9 1 (DB777656) Apis mellifera head cDNA, RIKEN full-length enric... 48 1.9 1 (CI619497) Oryza sativa Japonica Group cDNA, clone: J03B3117... 48 1.9 1 (L42023) Haemophilus influenzae Rd KW20, complete genome. 48 1.9 1 (L20805) Haemophilus influenzae ORF1 (with NADH ubiquinone o... 48 1.9 1 (AY160096) Dictyostelium discoideum nucleotide exchange fact... 40 2.3 4 (EW550335) rsin12_g11.y1 sin Sus scrofa cDNA 5', mRNA sequence. 38 2.8 2 (EW358386) rlyg23_c6.y1 lyg Sus scrofa cDNA 5', mRNA sequence. 38 3.1 2 (AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 34 3.6 2 (AC199953) Zea mays chromosome 1 clone CH201-114I20; ZMMBBc0... 36 3.7 2 (CX020444) EST938763 Field isolate cDNA library Plasmodium v... 36 4.0 2 (CD428521) ETH1_27_B06.b1_A002 Ethylene-treated seedlings So... 44 4.0 2 (CD211908) HS1_67_G06.b1_A012 Heat-shocked seedlings Sorghum... 44 4.1 2 (EH699387) CCIS11641.b1_B07.ab1 CCI(LMS) chicory Cichorium i... 36 4.6 2 (CX020996) EST939315 Field isolate cDNA library Plasmodium v... 36 4.6 2 (CX609703) ANR1_14_F03.b1_A002 Anaerobic roots Sorghum bicol... 44 4.6 2 (EK586962) 1095522116850 Global-Ocean-Sampling_GS-32-01-01-1... 36 4.7 2 (CC609979) OGUFB07TH ZM_0.7_1.5_KB Zea mays genomic clone ZM... 36 4.7 2 (AJ956751) Sus scrofa EST, clone C0007751m07, 5' direction. 38 4.8 2 (AJ956144) Sus scrofa EST, clone C0007751m07, 3' direction. 38 4.9 2 (CZ324507) ZMMBF0028J21f ZMMBF Zea mays genomic clone ZMMBF0... 36 4.9 2 (CG157968) PUFMG51TB ZM_0.6_1.0_KB Zea mays genomic clone ZM... 36 4.9 2 (AU268606) Dictyostelium discoideum vegetative cDNA clone:VS... 34 5.0 2 (FE274535) m1284_v-1re.seq differentially expressed sequence... 34 5.0 2 (BM277853) As_tgz_49E05_SKPL Ascaris suum adult male testis ... 34 5.0 2 (ET315807) S0011E14_SP6 CHORI-214 Salmo salar genomic clone ... 36 5.0 2 (BF169335) As_tgz_24A03_SKPL Ascaris suum adult male testis ... 34 5.0 2 (CB014014) As_tgz_73B08_SKPL Ascaris suum adult male testis ... 34 5.0 2
>(BJ354283) Dictyostelium discoideum cDNA clone:dda53j04, 3' end, single read. Length = 852
Score = 1392 bits (702), Expect = 0.0 Identities = 735/748 (98%) Strand = Plus / Minus
Query: 2069 atttcaggttcaattgatggattaacaactgcaaactcattaactggtatatcatcaatc 2128 |||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct: 852 atttcaggttcanttgatggattaacaactgcaaactcattaactggtgtgtcatcaatc 793
Query: 2129 gctggtataactaatcaagcatcatcaatcgccaatgcaatttcaggtggtaatattgca 2188 | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 792 gntggtataantaatcaagcatcatcaatcgccaatgcaatttcaggtggtaatattgca 733
Query: 2189 ggtgtaactacatctcaaagttcaactggtttgacatcatcagtatcaattgcatcctct 2248 || ||| |||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 732 ggcataantacatctcaaagttcaactggtttgacatcatcagtatcaattgcatcctgt 673
Query: 2249 ggccaaagttcaattggtattacttctggagttatctcaggaggcaacagtgttacagga 2308 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct: 672 ggccaaagttcaattggtattacttntggagttatctcaggaggcaacagtgttacagca 613
Query: 2309 ggatcaggatcagtcggaaatagtggttcaattactggtttaacaacaacaactggtgga 2368 |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 612 ggatcaggatcagtnggaaatagtggttcaattactggtttaacaacaacaaatggtgga 553
Query: 2369 ataagcggaggtaatgctatcgcaggtgtaacaacttcaaattcaatcgttcaaactgga 2428 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 552 ataagcggaggtaatgctatcgcaggtgtaacaacttcaaattcaatcgttcaaactgga 493
Query: 2429 tcagttacaggcttaactgccaatggtattgcaggatcagtcggaggatttacaacagca 2488 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 492 tcagttacaggcttaactgccaatggtattgcaggatcagtcggaggatttacaacagca 433
Query: 2489 aactcattaacaggagcaggttcaattagtaatattgccaatgcaatttcaactggtctt 2548 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 432 aactcattaacaggagcaggttcaattagtaatattgccaatgcaatttcaactggtctt 373
Query: 2549 gtcggtcaaatcacaacatcgaaatcaacaacatcagctcaaggtacaggtggactcact 2608 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 372 gtcggtcaaatcacaacatcgaaatcaacaacatcagctcaaggtacaggtggactcact 313
Query: 2609 actggcagtggtttgataggttctacaaatccaaccaaaaaaccatcttttagctccatt 2668 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 312 actggcagtggtttgataggttctacaaatccaaccaaaaaaccatcttttagctccatt 253
Query: 2669 ggcttcatttctggtagttttaaaatgaatgatgataaaccattcatttttgaaaatgat 2728 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 252 ggcttcatttctggtagttttaaaatgaatgatgataaaccattcatttttgaaaatgat 193
Query: 2729 aaagttgataaaaaagatattgttaaagaagtacctcgaaatcaaagcccagcttttagt 2788 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 192 aaagttgataaaaaagatattgttaaagaagtacctcgaaatcaaagcccagcttttagt 133
Query: 2789 gaaaattaatatctgtgactttatgtcc 2816 |||||||||||||||||||||||||||| Sbjct: 132 gaaaattaatatctgtgactttatgtcc 105
Score = 319 bits (161), Expect(4) = e-172 Identities = 191/201 (95%) Strand = Plus / Minus
Query: 1623 aacaacaaatggtggaataagtggaggtaatgctatcgcaggcgtaacaacttcaaattc 1682 ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct: 568 aacaacaaatggtggaataagcggaggtaatgctatcgcaggtgtaacaacttcaaattc 509
Query: 1683 aatcgctcaaactggatcagttacaggattaactgcaaatggtattgcaggatcagtcgg 1742 ||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct: 508 aatcgttcaaactggatcagttacaggcttaactgccaatggtattgcaggatcagtcgg 449
Query: 1743 aggtttaacaacagcaaactcattaacaggagtaggttcaattggtaatatcgccaatgc 1802 ||| || ||||||||||||||||||||||||| |||||||||| ||||||| |||||||| Sbjct: 448 aggatttacaacagcaaactcattaacaggagcaggttcaattagtaatattgccaatgc 389
Query: 1803 aatttcaactggtcttgtcgg 1823 ||||||||||||||||||||| Sbjct: 388 aatttcaactggtcttgtcgg 368
Score = 242 bits (122), Expect(4) = e-172 Identities = 139/146 (95%) Strand = Plus / Minus
Query: 1300 atttcaggttcaattgatggattaacaactgcaaactcattaactggtgtgtcatcaatc 1359 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 852 atttcaggttcanttgatggattaacaactgcaaactcattaactggtgtgtcatcaatc 793
Query: 1360 gctggtataactaatcaagcatcatcaatcgccaatgcaatttcaggtggtaatattgca 1419 | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 792 gntggtataantaatcaagcatcatcaatcgccaatgcaatttcaggtggtaatattgca 733
Query: 1420 ggtgtaactacatctcaaatttcaac 1445 || ||| ||||||||||| |||||| Sbjct: 732 ggcataantacatctcaaagttcaac 707
Score = 109 bits (55), Expect(4) = e-172 Identities = 75/82 (91%) Strand = Plus / Minus
Query: 1549 ggagttatctctggaggtaatagtgtcgcaggaggatcaggatcagtcggaaatagtggt 1608 ||||||||||| ||||| || ||||| ||| ||||||||||||||| |||||||||||| Sbjct: 645 ggagttatctcaggaggcaacagtgttacagcaggatcaggatcagtnggaaatagtggt 586
Query: 1609 tcaattactggtttaacaacaa 1630 |||||||||||||||||||||| Sbjct: 585 tcaattactggtttaacaacaa 564
Score = 28.2 bits (14), Expect(4) = e-172 Identities = 14/14 (100%) Strand = Plus / Minus
Query: 1509 tggccaaagttcaa 1522 |||||||||||||| Sbjct: 673 tggccaaagttcaa 660
Score = 172 bits (87), Expect(3) = 1e-48 Identities = 110/118 (93%) Strand = Plus / Minus
Query: 909 caatcgctcaaactggatcaattacaggnttaattgccaatggtattgcaggatcagtcg 968 |||||| ||||||||||||| ||||||| |||| |||||||||||||||||||||||||| Sbjct: 509 caatcgttcaaactggatcagttacaggcttaactgccaatggtattgcaggatcagtcg 450
Query: 969 gaggattaacaacagcaaactcattaacaggagtaggttcaattggtaatatcgccaa 1026 ||||||| ||||||||||||||||||||||||| |||||||||| ||||||| ||||| Sbjct: 449 gaggatttacaacagcaaactcattaacaggagcaggttcaattagtaatattgccaa 392
Score = 38.2 bits (19), Expect(3) = 1e-48 Identities = 22/23 (95%) Strand = Plus / Minus
Query: 886 gcaggtgtaccaacttcaaattc 908 ||||||||| ||||||||||||| Sbjct: 531 gcaggtgtaacaacttcaaattc 509
Score = 36.2 bits (18), Expect(3) = 1e-48 Identities = 18/18 (100%) Strand = Plus / Minus
Query: 1026 aatgcaatttcaactggt 1043 |||||||||||||||||| Sbjct: 393 aatgcaatttcaactggt 376
Score = 44.1 bits (22), Expect(4) = 3e-08 Identities = 25/26 (96%) Strand = Plus / Minus
Query: 971 ggattaacaacagcaaactcattaac 996 ||||||||||| |||||||||||||| Sbjct: 834 ggattaacaactgcaaactcattaac 809
Score = 36.2 bits (18), Expect(4) = 3e-08 Identities = 24/26 (92%) Strand = Plus / Minus
Query: 2087 ggattaacaactgcaaactcattaac 2112 ||||| ||||| |||||||||||||| Sbjct: 447 ggatttacaacagcaaactcattaac 422
Score = 36.2 bits (18), Expect(4) = 3e-08 Identities = 18/18 (100%) Strand = Plus / Minus
Query: 1792 atcgccaatgcaatttca 1809 |||||||||||||||||| Sbjct: 765 atcgccaatgcaatttca 748
Score = 30.2 bits (15), Expect(4) = 3e-08 Identities = 15/15 (100%) Strand = Plus / Minus
Query: 2159 gccaatgcaatttca 2173 ||||||||||||||| Sbjct: 396 gccaatgcaatttca 382
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 2,571,639,867 Number of extensions: 143943305 Number of successful extensions: 11196561 Number of sequences better than 10.0: 161 Length of query: 2946 Length of database: 95,242,211,685 Length adjustment: 25 Effective length of query: 2921 Effective length of database: 97,216,030,006 Effective search space: 283968023647526 Effective search space used: 283968023647526 X1: 11 (21.8 bits) S2: 23 (46.1 bits)
|
protein update |
2009. 6.29 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
21 |
AF (FL, S) |
3 |
SL (DIR, L) |
1 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
1 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |