Contig-U11272-1
Contig ID Contig-U11272-1
Contig update 2002.12.18
Contig sequence
>Contig-U11272-1 (Contig-U11272-1Q) /CSM_Contig/Contig-U11272-1Q.Seq.d
GGACAAGGCACTTTATCAGTTTCAGGGGTACAACCATCAAATAATTCGGG
TATACCTCCAATTGTTCTCACTAGAGATCATTCAAAAGCTTTTATTACAA
GTATGGGAAATCCAACCACAATTAACTATCAGATCTTGGCTCCATTCATT
AATGTATCTTCAATTCATATTTCTTATTCAACTTTATCCGATTCTCAATA
CGTATTTTATGCACTTTTCCAATGTCCAAAACCAACCAGTGATATTGAAC
CAACCTGTGAACCTGGATGCATGACAAGTGGAACTACTTCAACAACAACA
ACATCAAAAACAACAACAACAGCAACAACTAAAACATCAACAACCGGTTC
TTTGACTACTGGCCCTTCACAAAGTACTGGTCCTTCAACAACTACAACTA
CTGGTGGATCACAAAGTACTGGTGTTTCAACGACCATAACAAGTGGATCA
CAAAGTACTGGTGCATCAACAACTGCCACAGCTAGTGGATCACAAAGTAC
TAGCGCATCAACAACTGCCACAGCTAGTGGTTCACAAAGTACTGGTGCAT
CAACTGCCACAACTAGTGGAGGAAGCACTGGATTTATTTCCGGAGCTTCA
ACAACTTCAATGTCAACAACAACAGCAACAGGTAGTATTCCAACAACTGG
ATCACAAACCTCTACATCAGGATCATACACAACAACTGGATCACAAACCT
CTACTTCAGGAACATACACAACAACTGGATCACAAACTTNCACTTCAGGA
ACATACACAACAACCGGATCACAAACTTNCACTTCAGGAACATACACTAC
AACAACTAAACCATNTACAACTACTGGTGGGAGGAAGCACTGGATTCCTA
TCAGGGAGCTTTCAACAACTT----------TATTGCAGGTGTACCAACT
TCAAATTCCAATCGCTCAAACTGGATCAATTACAGGNTTAATTGCCAATG
GTATTGCAGGATCAGTCGGAGGATTAACAACAGCAAACTCATTAACAGGA
GTAGGTTCAATTGGTAATATCGCCAAATGCAATTTCAACTGGTGCTTGTC
GGTCAAATCCCAACATCAAAACCAACAATCTCATCAACAACAACAACAAT
ATCCAGTCAAGCTACAAGTGGCTTTATTTCTGGAGCAGGTAGTATCGCTG
GTGGATTATCAATTGGTAATAGTGGATCAGTAGCCGGAATAACAACTCAA
TCAGGAAGCTTAACTGGTGCAAATACAGTAGCAGCAGTAACAACAGCCAA
CTCAATTGGATCCAAAACATCAATAACTGGTGTTTCATCAATTGGAGCAA
TTTCAGGTTCAATTGATGGATTAACAACTGCAAACTCATTAACTGGTGTG
TCATCAATCGCTGGTATAACTAATCAAGCATCATCAATCGCCAATGCAAT
TTCAGGTGGTAATATTGCAGGTGTAACTACATCTCAAATTTCAACCGGTA
TTATTTCAGGAGTAATCGCAGGAGGATCTGGATCAATTACATCTCCACAA
TCTATAACTGGCCAAAGTTCAACCAGTATTATTTCAGGAGTAATTTCAGG
AGTTATCTCTGGAGGTAATAGTGTCGCAGGAGGATCAGGATCAGTCGGAA
ATAGTGGTTCAATTACTGGTTTAACAACAAATGGTGGAATAAGTGGAGGT
AATGCTATCGCAGGCGTAACAACTTCAAATTCAATCGCTCAAACTGGATC
AGTTACAGGATTAACTGCAAATGGTATTGCAGGATCAGTCGGAGGTTTAA
CAACAGCAAACTCATTAACAGGAGTAGGTTCAATTGGTAATATCGCCAAT
GCAATTTCAACTGGTCTTGTCGGTCAAATCACAACATCAAAACCAACAGT
TTCATCAACAACAACAACATCAAGTCAAGGTACAAGTGGTTTTATCTCTG
GAGCAGGTAGTATCGCTGGTGGATTATCAATTGGTAATAGTGGATCAGTA
GCCCGGAATAACAACTCAATCAGGAAGTTTAACTGGTGCAAATACAGTAG
CAGCAGTAACAACAGCCAACTCAATTGGATCCAAAACATCAATAACTGGT
GTTTCATCAATTGGAGCAATTTCAGGTTCAATTGATGGATTAACAACTGC
AAACTCATTAACTGGTATATCATCAATCGCTGGTATAACTAATCAAGCAT
CATCAATCGCCAATGCAATTTCAGGTGGTAATATTGCAGGTGTAACTACA
TCTCAAAGTTCAACTGGTTTGACATCATCAGTATCAATTGCATCCTCTGG
CCAAAGTTCAATTGGTATTACTTCTGGAGTTATCTCAGGAGGCAACAGTG
TTACAGGAGGATCAGGATCAGTCGGAAATAGTGGTTCAATTACTGGTTTA
ACAACAACAACTGGTGGAATAAGCGGAGGTAATGCTATCGCAGGTGTAAC
AACTTCAAATTCAATCGTTCAAACTGGATCAGTTACAGGCTTAACTGCCA
ATGGTATTGCAGGATCAGTCGGAGGATTTACAACAGCAAACTCATTAACA
GGAGCAGGTTCAATTAGTAATATTGCCAATGCAATTTCAACTGGTCTTGT
CGGTCAAATCACAACATCGAAATCAACAACATCAGCTCAAGGTACAGGTG
GACTCACTACTGGCAGTGGTTTGATAGGTTCTACAAATCCAACCAAAAAA
CCATCTTTTAGCTCCATTGGCTTCATTTCTGGTAGTTTTAAAATGAATGA
TGATAAACCATTCATTTTTGAAAATGATAAAGTTGATAAAAAAGATATTG
TTAAAGAAGTACCTCGAAATCAAAGCCCAGCTTTTAGTGAAAATTAATAT
CTGTGACTTTATGTCCAAATTATGTCTAAACAAGAAAATAATGTTAATTT
TATTTTTTATTAATGAAAATTAAAAAATAAAAAAAAAGATAAATAAAAAT
TAAAATACGAAATTAAACAAATAAATTTTTAATATAAATAAAAAAA

Gap gap included
Contig length 2936
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 733071
End point 736006
Strand (PLUS/MINUS) PLUS
Number of clones 26
Number of EST 41
Link to clone list U11272
List of clone(s)

est1=AHG794F,1,711
est2=AHD476F,191,871
est3=AHD476Z,872,1679
est4=AHO119F,938,1333
est5=AFF576F,967,1419
est6=AHF650F,980,1485
est7=AHD630F,984,1817
est8=AHO539F,1037,1542
est9=AHO774F,1064,1412
est10=AHQ290F,1089,1488
est11=AHD646F,1148,1763
est12=AFC555F,1161,1515
est13=AHP762F,1177,1499
est14=AHP884F,1198,1517
est15=AHJ184E,1218,1817
est16=AFJ261F,1228,1835
est17=AHL413F,1229,1763
est18=CFC675F,1331,2173
est19=AHL420F,1364,2241
est20=SLH423F,1542,2271
est21=AHI229F,1670,1867
est22=AHL413Z,2059,2912
est23=AHF650Z,2128,2898
est24=AFJ261Z,2129,2848
est25=AHD646Z,2131,2854
est26=SLH423Z,2230,2926
est27=CFC675Z,2241,2910
est28=AHD630Z,2263,2924
est29=AFC555Z,2271,2911
est30=AHL420Z,2276,2888
est31=AHQ290Z,2285,2941
est32=AFF576Z,2295,2878
est33=AHH529E,2311,2891
est34=AHB225E,2313,2911
est35=AHP762Z,2337,2896
est36=AHO574Z,2339,2936
est37=AHP722Z,2341,2901
est38=AHH182E,2346,2911
est39=AHO317Z,2348,2936
est40=AHI229Z,2364,2854
est41=AHP884Z,2416,2770
Translated Amino Acid sequence
GQGTLSVSGVQPSNNSGIPPIVLTRDHSKAFITSMGNPTTINYQILAPFINVSSIHISYS
TLSDSQYVFYALFQCPKPTSDIEPTCEPGCMTSGTTSTTTTSKTTTTATTKTSTTGSLTT
GPSQSTGPSTTTTTGGSQSTGVSTTITSGSQSTGASTTATASGSQSTSASTTATASGSQS
TGASTATTSGGSTGFISGASTTSMSTTTATGSIPTTGSQTSTSGSYTTTGSQTSTSGTYT
TTGSQTXTSGTYTTTGSQTXTSGTYTTTTKPXTTTGGRKHWIPIRELSTT---

---LQVYQLQIPIAQTGSITGLIANGIAGSVGGLTTANSLTGVGSIGNIAKCNFNWCLSV
KSQHQNQQSHQQQQQYPVKLQVALFLEQVVSLVDYQLVIVDQ*pe*qlnqea*lvqiq*q
q*qqptqldpkhq*lvfhqleqfqvqlmd*qlqth*lvchqslv*likhhqspmqfqvvi
lqv*lhlkfqpvlfqe*sqedldqlhlhnl*lakvqpvlfqe*fqelslevivsqedqdq
seivvqllv*qqmve*vevmlsqa*qlqiqslkldqlqd*lqmvlqdqsev*qqqth*qe
*vqlvispmqfqlvlsvksqhqnqqfhqqqqhqvkvqvvlsleqvvslvdyqlvivdq*p
gittqsgsltgantvaavttansigsktsitgvssigaisgsidglttansltgissiag
itnqassianaisggniagvttsqsstgltssvsiassgqssigitsgvisggnsvtggs
gsvgnsgsitglttttggisggnaiagvttsnsivqtgsvtgltangiagsvggfttans
ltgagsisnianaistglvgqittsksttsaqgtgglttgsgligstnptkkpsfssigf
isgsfkmnddkpfifendkvdkkdivkevprnqspafsen*yl*lyvqimskqennvnfi
fy**klknkkkdk*klkyeikqinf*yk*k


Translated Amino Acid sequence (All Frames)
Frame A:
GQGTLSVSGVQPSNNSGIPPIVLTRDHSKAFITSMGNPTTINYQILAPFINVSSIHISYS
TLSDSQYVFYALFQCPKPTSDIEPTCEPGCMTSGTTSTTTTSKTTTTATTKTSTTGSLTT
GPSQSTGPSTTTTTGGSQSTGVSTTITSGSQSTGASTTATASGSQSTSASTTATASGSQS
TGASTATTSGGSTGFISGASTTSMSTTTATGSIPTTGSQTSTSGSYTTTGSQTSTSGTYT
TTGSQTXTSGTYTTTGSQTXTSGTYTTTTKPXTTTGGRKHWIPIRELSTT---

---ycrctnfkfqslkldqlqx*lpmvlqdqsed*qqqth*qe*vqlvispnaistgacr
snpniktnnlinnnnniqssykwlyfwsr*yrwwiinw**wissrnnnsirklnwckyss
ssnnsqlnwiqninnwcfinwsnfrfn*winncklinwcvinrwyn*ssiinrqcnfrw*
ycrcnyisnfnryyfrsnrrriwinyistiynwpkfnqyyfrsnfrsylwr**crrriri
srk*wfnywfnnkwwnkwr*cyrrrnnfkfnrsnwisyrinckwycrisrrfnnsklinr
srfnw*yrqcnfnwscrsnhniktnsfinnnniksrykwfylwsr*yrwwiinw**wiss
pe*qlnqev*lvqiq*qq*qqptqldpkhq*lvfhqleqfqvqlmd*qlqth*lvyhqsl
v*likhhqspmqfqvvilqv*lhlkvqlv*hhqyqlhplakvqlvlllelsqeatvlqed
qdqseivvqllv*qqqlve*aevmlsqv*qlqiqsfkldqlqa*lpmvlqdqsedlqqqt
h*qeqvqlvilpmqfqlvlsvksqhrnqqhqlkvqvdsllavv**vlqiqpknhllapla
sflvvlk*mminhsflkmiklikkillkkyleikaqllvkinicdfmsklclnkkimlil
ffinen*kikkkinkn*ntklnk*ifninkk

Frame B:
dkalyqfqgynhqiirvylqlfsleiiqklllqvweiqpqltirswlhslmylqfifliq
lypilntyfmhfsnvqnqpvilnqpvnlda*qvellqqqqhqkqqqqqqlkhqqpvl*ll
alhkvlvlqqlqllvdhkvlvfqrp*qvdhkvlvhqqlpqlvdhkvlahqqlpqlvvhkv
lvhqlpqlveealdlfpelqqlqcqqqqqqvvfqqldhkplhqdhtqqldhkpllqehtq
qldhklxlqehtqqpdhklxlqehtlqqlnhxqllvggstgflsgsfqql---

---iagvptsnsnrsnwinyrxncqwycrisrrinnsklinrsrfnw*yrqmqfqlvlvg
qiptskptissttttissqatsgfisgagsiagglsignsgsvagittqsgsltgantva
avttansigsktsitgvssigaisgsidglttansltgvssiagitnqassianaisggn
iagvttsqistgiisgviaggsgsitspqsitgqsstsiisgvisgvisggnsvaggsgs
vgnsgsitglttnggisggnaiagvttsnsiaqtgsvtgltangiagsvgglttansltg
vgsignianaistglvgqittskptvssttttssqgtsgfisgagsiagglsignsgsva
rnnnsirkfnwckyssssnnsqlnwiqninnwcfinwsnfrfn*winncklinwyiinrw
yn*ssiinrqcnfrw*ycrcnyiskfnwfdiisincilwpkfnwyyfwsylrrqqcyrri
risrk*wfnywfnnnnwwnkrr*cyrrcnnfkfnrsnwisyrlncqwycrisrriynskl
inrsrfn**ycqcnfnwscrsnhnieinnissryrwthywqwfdrfyksnqktif*lhwl
hfw*f*ne***tihf*k**s**kryc*rstskskpsf**klisvtlcpnyv*trk*c*fy
fllmkikk*kkr*ikikirn*tnkfli*ikk

Frame C:
trhfisfrgttik*fgytsncsh*rsfksfyykygksnhn*lsdlgsih*cifnsyflfn
firfsirilctfpmsktnq*y*tnl*twmhdkwnyfnnnniknnnnsnn*ninnrffdyw
pftkywsfnnynywwitkywcfndhnkwitkywcinnchs*witky*rinnchs*wftky
wcinchn*wrkhwiyfrsfnnfnvnnnsnr*ysnnwitnlyiriihnnwitnlyfrnihn
nwitnxhfrnihnnritnxhfrnihynn*txynywweealdsyqgafnn---

---LQVYQLQIPIAQTGSITGLIANGIAGSVGGLTTANSLTGVGSIGNIAKCNFNWCLSV
KSQHQNQQSHQQQQQYPVKLQVALFLEQVVSLVDYQLVIVDQ*pe*qlnqea*lvqiq*q
q*qqptqldpkhq*lvfhqleqfqvqlmd*qlqth*lvchqslv*likhhqspmqfqvvi
lqv*lhlkfqpvlfqe*sqedldqlhlhnl*lakvqpvlfqe*fqelslevivsqedqdq
seivvqllv*qqmve*vevmlsqa*qlqiqslkldqlqd*lqmvlqdqsev*qqqth*qe
*vqlvispmqfqlvlsvksqhqnqqfhqqqqhqvkvqvvlsleqvvslvdyqlvivdq*p
gittqsgsltgantvaavttansigsktsitgvssigaisgsidglttansltgissiag
itnqassianaisggniagvttsqsstgltssvsiassgqssigitsgvisggnsvtggs
gsvgnsgsitglttttggisggnaiagvttsnsivqtgsvtgltangiagsvggfttans
ltgagsisnianaistglvgqittsksttsaqgtgglttgsgligstnptkkpsfssigf
isgsfkmnddkpfifendkvdkkdivkevprnqspafsen*yl*lyvqimskqennvnfi
fy**klknkkkdk*klkyeikqinf*yk*k

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U11272-1 (Contig-U11272-1Q)
/CSM_Contig/Contig-U11272-1Q.Seq.d
(2946 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U11272-1 (Contig-U11272-1Q) /CSM_Contig/Conti... 1859 0.0
Contig-U11830-1 (Contig-U11830-1Q) /CSM_Contig/Conti... 50 1e-05
Contig-U01212-1 (Contig-U01212-1Q) /CSM_Contig/Conti... 40 0.013
Contig-U13692-1 (Contig-U13692-1Q) /CSM_Contig/Conti... 38 0.053
Contig-U12751-1 (Contig-U12751-1Q) /CSM_Contig/Conti... 38 0.053
Contig-U11968-1 (Contig-U11968-1Q) /CSM_Contig/Conti... 38 0.053
Contig-U11921-1 (Contig-U11921-1Q) /CSM_Contig/Conti... 38 0.053
Contig-U11511-1 (Contig-U11511-1Q) /CSM_Contig/Conti... 38 0.053
Contig-U10318-1 (Contig-U10318-1Q) /CSM_Contig/Conti... 38 0.053
Contig-U04634-1 (Contig-U04634-1Q) /CSM_Contig/Conti... 38 0.053

>Contig-U11272-1 (Contig-U11272-1Q) /CSM_Contig/Contig-U11272-1Q.Seq.d
Length = 2946

Score = 1859 bits (938), Expect = 0.0
Identities = 938/938 (100%)
Strand = Plus / Plus


Query: 1879 ggtacaagtggttttatctctggagcaggtagtatcgctggtggattatcaattggtaat 1938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1879 ggtacaagtggttttatctctggagcaggtagtatcgctggtggattatcaattggtaat 1938


Query: 1939 agtggatcagtagcccggaataacaactcaatcaggaagtttaactggtgcaaatacagt 1998
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1939 agtggatcagtagcccggaataacaactcaatcaggaagtttaactggtgcaaatacagt 1998


Query: 1999 agcagcagtaacaacagccaactcaattggatccaaaacatcaataactggtgtttcatc 2058
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1999 agcagcagtaacaacagccaactcaattggatccaaaacatcaataactggtgtttcatc 2058


Query: 2059 aattggagcaatttcaggttcaattgatggattaacaactgcaaactcattaactggtat 2118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2059 aattggagcaatttcaggttcaattgatggattaacaactgcaaactcattaactggtat 2118


Query: 2119 atcatcaatcgctggtataactaatcaagcatcatcaatcgccaatgcaatttcaggtgg 2178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2119 atcatcaatcgctggtataactaatcaagcatcatcaatcgccaatgcaatttcaggtgg 2178


Query: 2179 taatattgcaggtgtaactacatctcaaagttcaactggtttgacatcatcagtatcaat 2238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2179 taatattgcaggtgtaactacatctcaaagttcaactggtttgacatcatcagtatcaat 2238


Query: 2239 tgcatcctctggccaaagttcaattggtattacttctggagttatctcaggaggcaacag 2298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2239 tgcatcctctggccaaagttcaattggtattacttctggagttatctcaggaggcaacag 2298


Query: 2299 tgttacaggaggatcaggatcagtcggaaatagtggttcaattactggtttaacaacaac 2358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2299 tgttacaggaggatcaggatcagtcggaaatagtggttcaattactggtttaacaacaac 2358


Query: 2359 aactggtggaataagcggaggtaatgctatcgcaggtgtaacaacttcaaattcaatcgt 2418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2359 aactggtggaataagcggaggtaatgctatcgcaggtgtaacaacttcaaattcaatcgt 2418


Query: 2419 tcaaactggatcagttacaggcttaactgccaatggtattgcaggatcagtcggaggatt 2478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2419 tcaaactggatcagttacaggcttaactgccaatggtattgcaggatcagtcggaggatt 2478


Query: 2479 tacaacagcaaactcattaacaggagcaggttcaattagtaatattgccaatgcaatttc 2538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2479 tacaacagcaaactcattaacaggagcaggttcaattagtaatattgccaatgcaatttc 2538


Query: 2539 aactggtcttgtcggtcaaatcacaacatcgaaatcaacaacatcagctcaaggtacagg 2598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2539 aactggtcttgtcggtcaaatcacaacatcgaaatcaacaacatcagctcaaggtacagg 2598


Query: 2599 tggactcactactggcagtggtttgataggttctacaaatccaaccaaaaaaccatcttt 2658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2599 tggactcactactggcagtggtttgataggttctacaaatccaaccaaaaaaccatcttt 2658


Query: 2659 tagctccattggcttcatttctggtagttttaaaatgaatgatgataaaccattcatttt 2718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2659 tagctccattggcttcatttctggtagttttaaaatgaatgatgataaaccattcatttt 2718


Query: 2719 tgaaaatgataaagttgataaaaaagatattgttaaagaagtacctcgaaatcaaagccc 2778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2719 tgaaaatgataaagttgataaaaaagatattgttaaagaagtacctcgaaatcaaagccc 2778


Query: 2779 agcttttagtgaaaattaatatctgtgactttatgtcc 2816
||||||||||||||||||||||||||||||||||||||
Sbjct: 2779 agcttttagtgaaaattaatatctgtgactttatgtcc 2816


Score = 1437 bits (725), Expect = 0.0
Identities = 725/725 (100%)
Strand = Plus / Plus


Query: 1100 tatccagtcaagctacaagtggctttatttctggagcaggtagtatcgctggtggattat 1159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1100 tatccagtcaagctacaagtggctttatttctggagcaggtagtatcgctggtggattat 1159


Query: 1160 caattggtaatagtggatcagtagccggaataacaactcaatcaggaagcttaactggtg 1219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1160 caattggtaatagtggatcagtagccggaataacaactcaatcaggaagcttaactggtg 1219


Query: 1220 caaatacagtagcagcagtaacaacagccaactcaattggatccaaaacatcaataactg 1279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1220 caaatacagtagcagcagtaacaacagccaactcaattggatccaaaacatcaataactg 1279


Query: 1280 gtgtttcatcaattggagcaatttcaggttcaattgatggattaacaactgcaaactcat 1339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1280 gtgtttcatcaattggagcaatttcaggttcaattgatggattaacaactgcaaactcat 1339


Query: 1340 taactggtgtgtcatcaatcgctggtataactaatcaagcatcatcaatcgccaatgcaa 1399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1340 taactggtgtgtcatcaatcgctggtataactaatcaagcatcatcaatcgccaatgcaa 1399


Query: 1400 tttcaggtggtaatattgcaggtgtaactacatctcaaatttcaaccggtattatttcag 1459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1400 tttcaggtggtaatattgcaggtgtaactacatctcaaatttcaaccggtattatttcag 1459


Query: 1460 gagtaatcgcaggaggatctggatcaattacatctccacaatctataactggccaaagtt 1519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1460 gagtaatcgcaggaggatctggatcaattacatctccacaatctataactggccaaagtt 1519


Query: 1520 caaccagtattatttcaggagtaatttcaggagttatctctggaggtaatagtgtcgcag 1579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1520 caaccagtattatttcaggagtaatttcaggagttatctctggaggtaatagtgtcgcag 1579


Query: 1580 gaggatcaggatcagtcggaaatagtggttcaattactggtttaacaacaaatggtggaa 1639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1580 gaggatcaggatcagtcggaaatagtggttcaattactggtttaacaacaaatggtggaa 1639


Query: 1640 taagtggaggtaatgctatcgcaggcgtaacaacttcaaattcaatcgctcaaactggat 1699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1640 taagtggaggtaatgctatcgcaggcgtaacaacttcaaattcaatcgctcaaactggat 1699


Query: 1700 cagttacaggattaactgcaaatggtattgcaggatcagtcggaggtttaacaacagcaa 1759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1700 cagttacaggattaactgcaaatggtattgcaggatcagtcggaggtttaacaacagcaa 1759


Query: 1760 actcattaacaggagtaggttcaattggtaatatcgccaatgcaatttcaactggtcttg 1819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1760 actcattaacaggagtaggttcaattggtaatatcgccaatgcaatttcaactggtcttg 1819


Query: 1820 tcggt 1824
|||||
Sbjct: 1820 tcggt 1824


Score = 1336 bits (674), Expect = 0.0
Identities = 716/716 (100%)
Strand = Plus / Plus


Query: 345 cggttctttgactactggcccttcacaaagtactggtccttcaacaactacaactactgg 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 cggttctttgactactggcccttcacaaagtactggtccttcaacaactacaactactgg 404


Query: 405 tggatcacaaagtactggtgtttcaacgaccataacaagtggatcacaaagtactggtgc 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 tggatcacaaagtactggtgtttcaacgaccataacaagtggatcacaaagtactggtgc 464


Query: 465 atcaacaactgccacagctagtggatcacaaagtactagcgcatcaacaactgccacagc 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 atcaacaactgccacagctagtggatcacaaagtactagcgcatcaacaactgccacagc 524


Query: 525 tagtggttcacaaagtactggtgcatcaactgccacaactagtggaggaagcactggatt 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tagtggttcacaaagtactggtgcatcaactgccacaactagtggaggaagcactggatt 584


Query: 585 tatttccggagcttcaacaacttcaatgtcaacaacaacagcaacaggtagtattccaac 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 tatttccggagcttcaacaacttcaatgtcaacaacaacagcaacaggtagtattccaac 644


Query: 645 aactggatcacaaacctctacatcaggatcatacacaacaactggatcacaaacctctac 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 aactggatcacaaacctctacatcaggatcatacacaacaactggatcacaaacctctac 704


Query: 705 ttcaggaacatacacaacaactggatcacaaacttncacttcaggaacatacacaacaac 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 ttcaggaacatacacaacaactggatcacaaacttncacttcaggaacatacacaacaac 764


Query: 765 cggatcacaaacttncacttcaggaacatacactacaacaactaaaccatntacaactac 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 cggatcacaaacttncacttcaggaacatacactacaacaactaaaccatntacaactac 824


Query: 825 tggtgggaggaagcactggattcctatcagggagctttcaacaacttnnnnnnnnnntat 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 tggtgggaggaagcactggattcctatcagggagctttcaacaacttnnnnnnnnnntat 884


Query: 885 tgcaggtgtaccaacttcaaattccaatcgctcaaactggatcaattacaggnttaattg 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885 tgcaggtgtaccaacttcaaattccaatcgctcaaactggatcaattacaggnttaattg 944


Query: 945 ccaatggtattgcaggatcagtcggaggattaacaacagcaaactcattaacaggagtag 1004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 945 ccaatggtattgcaggatcagtcggaggattaacaacagcaaactcattaacaggagtag 1004


Query: 1005 gttcaattggtaatatcgccaaatgcaatttcaactggtgcttgtcggtcaaatcc 1060
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1005 gttcaattggtaatatcgccaaatgcaatttcaactggtgcttgtcggtcaaatcc 1060


Score = 607 bits (306), Expect = e-173
Identities = 334/342 (97%), Gaps = 1/342 (0%)
Strand = Plus / Plus


Query: 1105 agtcaagctacaagtggctttatttctggagcaggtagtatcgctggtggattatcaatt 1164
||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1873 agtcaaggtacaagtggttttatctctggagcaggtagtatcgctggtggattatcaatt 1932


Query: 1165 ggtaatagtggatcagtagcc-ggaataacaactcaatcaggaagcttaactggtgcaaa 1223
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 1933 ggtaatagtggatcagtagcccggaataacaactcaatcaggaagtttaactggtgcaaa 1992


Query: 1224 tacagtagcagcagtaacaacagccaactcaattggatccaaaacatcaataactggtgt 1283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1993 tacagtagcagcagtaacaacagccaactcaattggatccaaaacatcaataactggtgt 2052


Query: 1284 ttcatcaattggagcaatttcaggttcaattgatggattaacaactgcaaactcattaac 1343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2053 ttcatcaattggagcaatttcaggttcaattgatggattaacaactgcaaactcattaac 2112


Query: 1344 tggtgtgtcatcaatcgctggtataactaatcaagcatcatcaatcgccaatgcaatttc 1403
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2113 tggtatatcatcaatcgctggtataactaatcaagcatcatcaatcgccaatgcaatttc 2172


Query: 1404 aggtggtaatattgcaggtgtaactacatctcaaatttcaac 1445
||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 2173 aggtggtaatattgcaggtgtaactacatctcaaagttcaac 2214


Score = 599 bits (302), Expect = e-171
Identities = 327/334 (97%), Gaps = 1/334 (0%)
Strand = Plus / Plus


Query: 1881 tacaagtggttttatctctggagcaggtagtatcgctggtggattatcaattggtaatag 1940
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1113 tacaagtggctttatttctggagcaggtagtatcgctggtggattatcaattggtaatag 1172


Query: 1941 tggatcagtagcccggaataacaactcaatcaggaagtttaactggtgcaaatacagtag 2000
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1173 tggatcagtagcc-ggaataacaactcaatcaggaagcttaactggtgcaaatacagtag 1231


Query: 2001 cagcagtaacaacagccaactcaattggatccaaaacatcaataactggtgtttcatcaa 2060
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1232 cagcagtaacaacagccaactcaattggatccaaaacatcaataactggtgtttcatcaa 1291


Query: 2061 ttggagcaatttcaggttcaattgatggattaacaactgcaaactcattaactggtatat 2120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 1292 ttggagcaatttcaggttcaattgatggattaacaactgcaaactcattaactggtgtgt 1351


Query: 2121 catcaatcgctggtataactaatcaagcatcatcaatcgccaatgcaatttcaggtggta 2180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1352 catcaatcgctggtataactaatcaagcatcatcaatcgccaatgcaatttcaggtggta 1411


Query: 2181 atattgcaggtgtaactacatctcaaagttcaac 2214
||||||||||||||||||||||||||| ||||||
Sbjct: 1412 atattgcaggtgtaactacatctcaaatttcaac 1445


Score = 571 bits (288), Expect = e-162
Identities = 288/288 (100%)
Strand = Plus / Plus


Query: 1 ggacaaggcactttatcagtttcaggggtacaaccatcaaataattcgggtatacctcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggacaaggcactttatcagtttcaggggtacaaccatcaaataattcgggtatacctcca 60


Query: 61 attgttctcactagagatcattcaaaagcttttattacaagtatgggaaatccaaccaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 attgttctcactagagatcattcaaaagcttttattacaagtatgggaaatccaaccaca 120


Query: 121 attaactatcagatcttggctccattcattaatgtatcttcaattcatatttcttattca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 attaactatcagatcttggctccattcattaatgtatcttcaattcatatttcttattca 180


Query: 181 actttatccgattctcaatacgtattttatgcacttttccaatgtccaaaaccaaccagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 actttatccgattctcaatacgtattttatgcacttttccaatgtccaaaaccaaccagt 240


Query: 241 gatattgaaccaacctgtgaacctggatgcatgacaagtggaactact 288
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gatattgaaccaacctgtgaacctggatgcatgacaagtggaactact 288


Score = 430 bits (217), Expect = e-120
Identities = 282/303 (93%), Gaps = 3/303 (0%)
Strand = Plus / Plus


Query: 2276 ggagttatctcaggaggcaacagtgttacaggaggatcaggatcagtcggaaatagtggt 2335
||||||||||| ||||| || ||||| ||||||||||||||||||||||||||||||||
Sbjct: 1549 ggagttatctctggaggtaatagtgtcgcaggaggatcaggatcagtcggaaatagtggt 1608


Query: 2336 tcaattactggtttaacaacaacaactggtggaataagcggaggtaatgctatcgcaggt 2395
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 1609 tcaattactggtttaacaacaaa---tggtggaataagtggaggtaatgctatcgcaggc 1665


Query: 2396 gtaacaacttcaaattcaatcgttcaaactggatcagttacaggcttaactgccaatggt 2455
|||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||
Sbjct: 1666 gtaacaacttcaaattcaatcgctcaaactggatcagttacaggattaactgcaaatggt 1725


Query: 2456 attgcaggatcagtcggaggatttacaacagcaaactcattaacaggagcaggttcaatt 2515
|||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||
Sbjct: 1726 attgcaggatcagtcggaggtttaacaacagcaaactcattaacaggagtaggttcaatt 1785


Query: 2516 agtaatattgccaatgcaatttcaactggtcttgtcggtcaaatcacaacatcgaaatca 2575
||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 1786 ggtaatatcgccaatgcaatttcaactggtcttgtcggtcaaatcacaacatcaaaacca 1845


Query: 2576 aca 2578
|||
Sbjct: 1846 aca 1848


Score = 398 bits (201), Expect = e-110
Identities = 260/279 (93%), Gaps = 3/279 (1%)
Strand = Plus / Plus


Query: 1549 ggagttatctctggaggtaatagtgtcgcaggaggatcaggatcagtcggaaatagtggt 1608
||||||||||| ||||| || ||||| ||||||||||||||||||||||||||||||||
Sbjct: 2276 ggagttatctcaggaggcaacagtgttacaggaggatcaggatcagtcggaaatagtggt 2335


Query: 1609 tcaattactggtttaacaacaaa---tggtggaataagtggaggtaatgctatcgcaggc 1665
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 2336 tcaattactggtttaacaacaacaactggtggaataagcggaggtaatgctatcgcaggt 2395


Query: 1666 gtaacaacttcaaattcaatcgctcaaactggatcagttacaggattaactgcaaatggt 1725
|||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||
Sbjct: 2396 gtaacaacttcaaattcaatcgttcaaactggatcagttacaggcttaactgccaatggt 2455


Query: 1726 attgcaggatcagtcggaggtttaacaacagcaaactcattaacaggagtaggttcaatt 1785
|||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||
Sbjct: 2456 attgcaggatcagtcggaggatttacaacagcaaactcattaacaggagcaggttcaatt 2515


Query: 1786 ggtaatatcgccaatgcaatttcaactggtcttgtcggt 1824
||||||| ||||||||||||||||||||||||||||||
Sbjct: 2516 agtaatattgccaatgcaatttcaactggtcttgtcggt 2554


Score = 244 bits (123), Expect = 5e-64
Identities = 164/174 (94%), Gaps = 3/174 (1%)
Strand = Plus / Plus


Query: 886 gcaggtgtaccaacttcaaattccaatcgctcaaactggatcaattacaggnttaattgc 945
||||| ||| ||||||||||||| ||||||||||||||||||| ||||||| |||| |||
Sbjct: 1660 gcaggcgtaacaacttcaaattc-aatcgctcaaactggatcagttacaggattaactgc 1718


Query: 946 caatggtattgcaggatcagtcggaggattaacaacagcaaactcattaacaggagtagg 1005
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1719 aaatggtattgcaggatcagtcggaggtttaacaacagcaaactcattaacaggagtagg 1778


Query: 1006 ttcaattggtaatatcgccaaatgcaatttcaactggtgcttgtcggtcaaatc 1059
||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 1779 ttcaattggtaatatcgcc-aatgcaatttcaactggt-cttgtcggtcaaatc 1830


Score = 242 bits (122), Expect = 2e-63
Identities = 178/193 (92%), Gaps = 3/193 (1%)
Strand = Plus / Plus


Query: 2390 gcaggtgtaacaacttcaaattc-aatcgttcaaactggatcagttacaggcttaactgc 2448
||||||||| ||||||||||||| ||||| ||||||||||||| ||||||| |||| |||
Sbjct: 886 gcaggtgtaccaacttcaaattccaatcgctcaaactggatcaattacaggnttaattgc 945


Query: 2449 caatggtattgcaggatcagtcggaggatttacaacagcaaactcattaacaggagcagg 2508
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct: 946 caatggtattgcaggatcagtcggaggattaacaacagcaaactcattaacaggagtagg 1005


Query: 2509 ttcaattagtaatattgcc-aatgcaatttcaactggt-cttgtcggtcaaatcacaaca 2566
||||||| ||||||| ||| |||||||||||||||||| ||||||||||||||| |||||
Sbjct: 1006 ttcaattggtaatatcgccaaatgcaatttcaactggtgcttgtcggtcaaatcccaaca 1065


Query: 2567 tcgaaatcaacaa 2579
|| ||| ||||||
Sbjct: 1066 tcaaaaccaacaa 1078


Score = 232 bits (117), Expect = 2e-60
Identities = 158/168 (94%), Gaps = 3/168 (1%)
Strand = Plus / Plus


Query: 1660 gcaggcgtaacaacttcaaattc-aatcgctcaaactggatcagttacaggattaactgc 1718
||||| ||| ||||||||||||| ||||||||||||||||||| ||||||| |||| |||
Sbjct: 886 gcaggtgtaccaacttcaaattccaatcgctcaaactggatcaattacaggnttaattgc 945


Query: 1719 aaatggtattgcaggatcagtcggaggtttaacaacagcaaactcattaacaggagtagg 1778
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 946 caatggtattgcaggatcagtcggaggattaacaacagcaaactcattaacaggagtagg 1005


Query: 1779 ttcaattggtaatatcgcc-aatgcaatttcaactggt-cttgtcggt 1824
||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 1006 ttcaattggtaatatcgccaaatgcaatttcaactggtgcttgtcggt 1053


Score = 228 bits (115), Expect = 3e-59
Identities = 162/174 (93%), Gaps = 3/174 (1%)
Strand = Plus / Plus


Query: 886 gcaggtgtaccaacttcaaattccaatcgctcaaactggatcaattacaggnttaattgc 945
||||||||| ||||||||||||| ||||| ||||||||||||| ||||||| |||| |||
Sbjct: 2390 gcaggtgtaacaacttcaaattc-aatcgttcaaactggatcagttacaggcttaactgc 2448


Query: 946 caatggtattgcaggatcagtcggaggattaacaacagcaaactcattaacaggagtagg 1005
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct: 2449 caatggtattgcaggatcagtcggaggatttacaacagcaaactcattaacaggagcagg 2508


Query: 1006 ttcaattggtaatatcgccaaatgcaatttcaactggtgcttgtcggtcaaatc 1059
||||||| ||||||| ||| |||||||||||||||||| |||||||||||||||
Sbjct: 2509 ttcaattagtaatattgcc-aatgcaatttcaactggt-cttgtcggtcaaatc 2560


Score = 44.1 bits (22), Expect = 9e-04
Identities = 25/26 (96%)
Strand = Plus / Plus


Query: 971 ggattaacaacagcaaactcattaac 996
||||||||||| ||||||||||||||
Sbjct: 2087 ggattaacaactgcaaactcattaac 2112


Score = 44.1 bits (22), Expect = 9e-04
Identities = 25/26 (96%)
Strand = Plus / Plus


Query: 1318 ggattaacaactgcaaactcattaac 1343
||||||||||| ||||||||||||||
Sbjct: 971 ggattaacaacagcaaactcattaac 996


Score = 44.1 bits (22), Expect = 9e-04
Identities = 25/26 (96%)
Strand = Plus / Plus


Query: 2087 ggattaacaactgcaaactcattaac 2112
||||||||||| ||||||||||||||
Sbjct: 971 ggattaacaacagcaaactcattaac 996


Score = 44.1 bits (22), Expect = 9e-04
Identities = 25/26 (96%)
Strand = Plus / Plus


Query: 971 ggattaacaacagcaaactcattaac 996
||||||||||| ||||||||||||||
Sbjct: 1318 ggattaacaactgcaaactcattaac 1343


Score = 38.2 bits (19), Expect = 0.053
Identities = 22/23 (95%)
Strand = Plus / Plus


Query: 1747 ttaacaacagcaaactcattaac 1769
|||||||| ||||||||||||||
Sbjct: 2090 ttaacaactgcaaactcattaac 2112


Score = 38.2 bits (19), Expect = 0.053
Identities = 22/23 (95%)
Strand = Plus / Plus


Query: 2090 ttaacaactgcaaactcattaac 2112
|||||||| ||||||||||||||
Sbjct: 1747 ttaacaacagcaaactcattaac 1769


Score = 36.2 bits (18), Expect = 0.21
Identities = 24/26 (92%)
Strand = Plus / Plus


Query: 2474 ggatttacaacagcaaactcattaac 2499
||||| ||||| ||||||||||||||
Sbjct: 1318 ggattaacaactgcaaactcattaac 1343


Score = 36.2 bits (18), Expect = 0.21
Identities = 24/26 (92%)
Strand = Plus / Plus


Query: 1318 ggattaacaactgcaaactcattaac 1343
||||| ||||| ||||||||||||||
Sbjct: 2474 ggatttacaacagcaaactcattaac 2499


Score = 36.2 bits (18), Expect = 0.21
Identities = 18/18 (100%)
Strand = Plus / Plus


Query: 1792 atcgccaatgcaatttca 1809
||||||||||||||||||
Sbjct: 2156 atcgccaatgcaatttca 2173


Score = 36.2 bits (18), Expect = 0.21
Identities = 18/18 (100%)
Strand = Plus / Plus


Query: 2156 atcgccaatgcaatttca 2173
||||||||||||||||||
Sbjct: 1792 atcgccaatgcaatttca 1809


Score = 34.2 bits (17), Expect = 0.83
Identities = 38/45 (84%)
Strand = Plus / Plus


Query: 1508 ctggccaaagttcaaccagtattatttcaggagtaatttcaggag 1552
||||||||||||||| |||||| ||| ||||| || |||||||
Sbjct: 2247 ctggccaaagttcaattggtattacttctggagttatctcaggag 2291


Score = 34.2 bits (17), Expect = 0.83
Identities = 38/45 (84%)
Strand = Plus / Plus


Query: 2247 ctggccaaagttcaattggtattacttctggagttatctcaggag 2291
||||||||||||||| |||||| ||| ||||| || |||||||
Sbjct: 1508 ctggccaaagttcaaccagtattatttcaggagtaatttcaggag 1552


Score = 34.2 bits (17), Expect = 0.83
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 614 caacaacaacagcaaca 630
|||||||||||||||||
Sbjct: 311 caacaacaacagcaaca 327


Score = 32.2 bits (16), Expect = 3.3
Identities = 25/28 (89%)
Strand = Plus / Plus


Query: 2574 caacaacatcagctcaaggtacaggtgg 2601
||||||||||| |||||||||| ||||
Sbjct: 1862 caacaacatcaagtcaaggtacaagtgg 1889


>Contig-U11830-1 (Contig-U11830-1Q) /CSM_Contig/Contig-U11830-1Q.Seq.d
Length = 971

Score = 50.1 bits (25), Expect = 1e-05
Identities = 31/33 (93%)
Strand = Plus / Plus


Query: 599 caacaacttcaatgtcaacaacaacagcaacag 631
|||||||||||| |||||||||||||||||||
Sbjct: 732 caacaacttcaacatcaacaacaacagcaacag 764


>Contig-U01212-1 (Contig-U01212-1Q) /CSM_Contig/Contig-U01212-1Q.Seq.d
Length = 1218

Score = 40.1 bits (20), Expect = 0.013
Identities = 20/20 (100%)
Strand = Plus / Plus


Query: 383 cttcaacaactacaactact 402
||||||||||||||||||||
Sbjct: 169 cttcaacaactacaactact 188


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 36,364
Number of Sequences: 6905
Number of extensions: 36364
Number of successful extensions: 5972
Number of sequences better than 10.0: 234
length of query: 2946
length of database: 5,674,871
effective HSP length: 17
effective length of query: 2929
effective length of database: 5,557,486
effective search space: 16277876494
effective search space used: 16277876494
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)
dna update 2008.11.23
Homology vs DNA
Query= Contig-U11272-1 (Contig-U11272-1Q) /CSM_Contig/Contig-U11272-1Q.Seq.d
(2946 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ354283) Dictyostelium discoideum cDNA clone:dda53j04, 3' ... 1392 0.0 1
(BJ344518) Dictyostelium discoideum cDNA clone:dda19i16, 3' ... 1328 0.0 1
(BJ350013) Dictyostelium discoideum cDNA clone:dda38k12, 3' ... 1312 0.0 1
(BJ351237) Dictyostelium discoideum cDNA clone:dda42c14, 3' ... 1296 0.0 1
(BJ374161) Dictyostelium discoideum cDNA clone:ddc6e20, 3' e... 1114 0.0 1
(BJ341441) Dictyostelium discoideum cDNA clone:dda6m13, 3' e... 1063 0.0 1
(BJ327205) Dictyostelium discoideum cDNA clone:dda19i16, 5' ... 1035 0.0 1
(BJ331992) Dictyostelium discoideum cDNA clone:dda37h20, 5' ... 1027 0.0 1
(AU040006) Dictyostelium discoideum slug cDNA, clone SLH423. 854 0.0 2
(BJ336204) Dictyostelium discoideum cDNA clone:dda53h06, 5' ... 797 0.0 7
(AU062062) Dictyostelium discoideum slug cDNA, clone SLH423. 743 0.0 3
(BJ334041) Dictyostelium discoideum cDNA clone:dda44l23, 5' ... 728 0.0 2
(BJ357508) Dictyostelium discoideum cDNA clone:dda63c24, 3' ... 1009 0.0 1
(BJ354273) Dictyostelium discoideum cDNA clone:dda53h06, 3' ... 1009 0.0 1
(BJ350009) Dictyostelium discoideum cDNA clone:dda38k08, 3' ... 726 0.0 2
(BJ332224) Dictyostelium discoideum cDNA clone:dda38k08, 5' ... 821 0.0 7
(BJ349848) Dictyostelium discoideum cDNA clone:dda37h20, 3' ... 706 0.0 4
(BJ340373) Dictyostelium discoideum cDNA clone:dda12g19, 3' ... 591 0.0 4
(BJ336213) Dictyostelium discoideum cDNA clone:dda53j04, 5' ... 607 0.0 2
(BJ357161) Dictyostelium discoideum cDNA clone:dda62l15, 3' ... 926 0.0 1
(BJ356576) Dictyostelium discoideum cDNA clone:dda60c19, 3' ... 922 0.0 1
(BJ352317) Dictyostelium discoideum cDNA clone:dda46i07, 3' ... 914 0.0 1
(BJ360572) Dictyostelium discoideum cDNA clone:ddc6e20, 5' e... 557 0.0 8
(BJ357008) Dictyostelium discoideum cDNA clone:dda62l05, 3' ... 904 0.0 1
(BJ348436) Dictyostelium discoideum cDNA clone:dda33a08, 3' ... 902 0.0 1
(BJ352140) Dictyostelium discoideum cDNA clone:dda45c21, 3' ... 890 0.0 1
(BJ352625) Dictyostelium discoideum cDNA clone:dda47i08, 3' ... 872 0.0 1
(BJ356026) Dictyostelium discoideum cDNA clone:dda59b05, 3' ... 868 0.0 1
(BJ338181) Dictyostelium discoideum cDNA clone:dda60m09, 5' ... 862 0.0 1
(BJ332228) Dictyostelium discoideum cDNA clone:dda38k12, 5' ... 630 0.0 4
(BJ333377) Dictyostelium discoideum cDNA clone:dda42c14, 5' ... 690 0.0 3
(BJ335337) Dictyostelium discoideum cDNA clone:dda49g21, 5' ... 519 0.0 3
(BJ339000) Dictyostelium discoideum cDNA clone:dda63c24, 5' ... 706 0.0 1
(BJ357225) Dictyostelium discoideum cDNA clone:dda62h22, 3' ... 680 0.0 1
(BJ323903) Dictyostelium discoideum cDNA clone:dda12g19, 5' ... 597 0.0 3
(BJ324513) Dictyostelium discoideum cDNA clone:dda6m13, 5' e... 648 0.0 1
(BJ338285) Dictyostelium discoideum cDNA clone:dda60d19, 5' ... 640 e-179 1
(BJ353346) Dictyostelium discoideum cDNA clone:dda49g21, 3' ... 609 e-169 1
(BJ337809) Dictyostelium discoideum cDNA clone:dda59e05, 5' ... 452 e-164 3
(BJ338743) Dictyostelium discoideum cDNA clone:dda62h22, 5' ... 557 e-154 1
(BJ338698) Dictyostelium discoideum cDNA clone:dda62l15, 5' ... 547 e-151 1
(BJ330918) Dictyostelium discoideum cDNA clone:dda33a08, 5' ... 412 e-110 1
(BJ334430) Dictyostelium discoideum cDNA clone:dda46i07, 5' ... 394 e-109 2
(BJ334280) Dictyostelium discoideum cDNA clone:dda45c21, 5' ... 309 3e-79 1
(BJ334662) Dictyostelium discoideum cDNA clone:dda47i08, 5' ... 258 1e-63 1
(ET238846) S0177P09_SP6 CHORI-214 Salmo salar genomic clone ... 32 1e-04 3
(EJ667656) 1092955047297 Global-Ocean-Sampling_GS-30-02-01-1... 52 0.12 1
(EJ540931) 1092955372455 Global-Ocean-Sampling_GS-29-01-01-1... 52 0.12 1
(AU269308) Dictyostelium discoideum vegetative cDNA clone:VS... 40 0.20 3
(FK719081) pl_004-A7 Ilyanassa (snail) 0-48h Ilyanassa obsol... 28 0.31 3
(FK715023) pl_019-G3 Ilyanassa (snail) 0-48h Ilyanassa obsol... 28 0.31 3
(FK714621) pl_001-B2 Ilyanassa (snail) 0-48h Ilyanassa obsol... 28 0.31 3
(FK714068) pl_091-E12 Ilyanassa (snail) 0-48h Ilyanassa obso... 28 0.32 3
(AY913959) Hylaeus leptocephalus isolate H_bis_109 cytochrom... 40 0.49 2
(AU039777) Dictyostelium discoideum slug cDNA, clone SLG393. 50 0.49 1
(BJ382386) Dictyostelium discoideum cDNA clone:ddc44g14, 3' ... 50 0.49 1
(AC096997) Takifugu rubripes clone 217A23, complete sequence. 38 0.71 3
(AC096684) Takifugu rubripes clone 241N7, complete sequence. 38 0.87 3
(CX155596) TfEST049E01 Tf30924 cDNA Library Tritrichomonas f... 34 0.98 3
(AM543998) Paracentrotus lividus EST, clone MPMGp1171E21116Q... 38 1.2 2
(DH421723) Oryzias latipes Fosmid clone:GOLWFno834_i24, forw... 36 1.8 2
(BX005345) Mouse DNA sequence from clone RP23-344C21 on chro... 48 1.9 1
(DJ375726) Identification of Essential Genes in Prokaryotes. 48 1.9 1
(BD426631) The Nucleotide Sequence of the Haemophilus influe... 48 1.9 1
(BD424941) The Nucleotide Sequence of the Haemophilus influe... 48 1.9 1
(AX395051) Sequence 25 from Patent WO0218601. 48 1.9 1
(AX083990) Sequence 25 from Patent WO0111033. 48 1.9 1
(AR632719) Sequence 1 from patent US 6846651. 48 1.9 1
(AR274513) Sequence 1 from patent US 6506581. 48 1.9 1
(AC117351) Rattus norvegicus clone CH230-81E16, WORKING DRAF... 48 1.9 1
(AC114033) Rattus norvegicus clone CH230-45E21, WORKING DRAF... 48 1.9 1
(AC108841) Mus musculus clone RP23-351H9, WORKING DRAFT SEQU... 48 1.9 1
(DH067761) Oryzias latipes Fosmid clone:GOLWFno128_i06, reve... 48 1.9 1
(DB777656) Apis mellifera head cDNA, RIKEN full-length enric... 48 1.9 1
(CI619497) Oryza sativa Japonica Group cDNA, clone: J03B3117... 48 1.9 1
(L42023) Haemophilus influenzae Rd KW20, complete genome. 48 1.9 1
(L20805) Haemophilus influenzae ORF1 (with NADH ubiquinone o... 48 1.9 1
(AY160096) Dictyostelium discoideum nucleotide exchange fact... 40 2.3 4
(EW550335) rsin12_g11.y1 sin Sus scrofa cDNA 5', mRNA sequence. 38 2.8 2
(EW358386) rlyg23_c6.y1 lyg Sus scrofa cDNA 5', mRNA sequence. 38 3.1 2
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 34 3.6 2
(AC199953) Zea mays chromosome 1 clone CH201-114I20; ZMMBBc0... 36 3.7 2
(CX020444) EST938763 Field isolate cDNA library Plasmodium v... 36 4.0 2
(CD428521) ETH1_27_B06.b1_A002 Ethylene-treated seedlings So... 44 4.0 2
(CD211908) HS1_67_G06.b1_A012 Heat-shocked seedlings Sorghum... 44 4.1 2
(EH699387) CCIS11641.b1_B07.ab1 CCI(LMS) chicory Cichorium i... 36 4.6 2
(CX020996) EST939315 Field isolate cDNA library Plasmodium v... 36 4.6 2
(CX609703) ANR1_14_F03.b1_A002 Anaerobic roots Sorghum bicol... 44 4.6 2
(EK586962) 1095522116850 Global-Ocean-Sampling_GS-32-01-01-1... 36 4.7 2
(CC609979) OGUFB07TH ZM_0.7_1.5_KB Zea mays genomic clone ZM... 36 4.7 2
(AJ956751) Sus scrofa EST, clone C0007751m07, 5' direction. 38 4.8 2
(AJ956144) Sus scrofa EST, clone C0007751m07, 3' direction. 38 4.9 2
(CZ324507) ZMMBF0028J21f ZMMBF Zea mays genomic clone ZMMBF0... 36 4.9 2
(CG157968) PUFMG51TB ZM_0.6_1.0_KB Zea mays genomic clone ZM... 36 4.9 2
(AU268606) Dictyostelium discoideum vegetative cDNA clone:VS... 34 5.0 2
(FE274535) m1284_v-1re.seq differentially expressed sequence... 34 5.0 2
(BM277853) As_tgz_49E05_SKPL Ascaris suum adult male testis ... 34 5.0 2
(ET315807) S0011E14_SP6 CHORI-214 Salmo salar genomic clone ... 36 5.0 2
(BF169335) As_tgz_24A03_SKPL Ascaris suum adult male testis ... 34 5.0 2
(CB014014) As_tgz_73B08_SKPL Ascaris suum adult male testis ... 34 5.0 2

>(BJ354283) Dictyostelium discoideum cDNA clone:dda53j04, 3' end,
single read.
Length = 852

Score = 1392 bits (702), Expect = 0.0
Identities = 735/748 (98%)
Strand = Plus / Minus


Query: 2069 atttcaggttcaattgatggattaacaactgcaaactcattaactggtatatcatcaatc 2128
|||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 852 atttcaggttcanttgatggattaacaactgcaaactcattaactggtgtgtcatcaatc 793


Query: 2129 gctggtataactaatcaagcatcatcaatcgccaatgcaatttcaggtggtaatattgca 2188
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 gntggtataantaatcaagcatcatcaatcgccaatgcaatttcaggtggtaatattgca 733


Query: 2189 ggtgtaactacatctcaaagttcaactggtttgacatcatcagtatcaattgcatcctct 2248
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 732 ggcataantacatctcaaagttcaactggtttgacatcatcagtatcaattgcatcctgt 673


Query: 2249 ggccaaagttcaattggtattacttctggagttatctcaggaggcaacagtgttacagga 2308
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 672 ggccaaagttcaattggtattacttntggagttatctcaggaggcaacagtgttacagca 613


Query: 2309 ggatcaggatcagtcggaaatagtggttcaattactggtttaacaacaacaactggtgga 2368
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 612 ggatcaggatcagtnggaaatagtggttcaattactggtttaacaacaacaaatggtgga 553


Query: 2369 ataagcggaggtaatgctatcgcaggtgtaacaacttcaaattcaatcgttcaaactgga 2428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ataagcggaggtaatgctatcgcaggtgtaacaacttcaaattcaatcgttcaaactgga 493


Query: 2429 tcagttacaggcttaactgccaatggtattgcaggatcagtcggaggatttacaacagca 2488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tcagttacaggcttaactgccaatggtattgcaggatcagtcggaggatttacaacagca 433


Query: 2489 aactcattaacaggagcaggttcaattagtaatattgccaatgcaatttcaactggtctt 2548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 aactcattaacaggagcaggttcaattagtaatattgccaatgcaatttcaactggtctt 373


Query: 2549 gtcggtcaaatcacaacatcgaaatcaacaacatcagctcaaggtacaggtggactcact 2608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gtcggtcaaatcacaacatcgaaatcaacaacatcagctcaaggtacaggtggactcact 313


Query: 2609 actggcagtggtttgataggttctacaaatccaaccaaaaaaccatcttttagctccatt 2668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 actggcagtggtttgataggttctacaaatccaaccaaaaaaccatcttttagctccatt 253


Query: 2669 ggcttcatttctggtagttttaaaatgaatgatgataaaccattcatttttgaaaatgat 2728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggcttcatttctggtagttttaaaatgaatgatgataaaccattcatttttgaaaatgat 193


Query: 2729 aaagttgataaaaaagatattgttaaagaagtacctcgaaatcaaagcccagcttttagt 2788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 aaagttgataaaaaagatattgttaaagaagtacctcgaaatcaaagcccagcttttagt 133


Query: 2789 gaaaattaatatctgtgactttatgtcc 2816
||||||||||||||||||||||||||||
Sbjct: 132 gaaaattaatatctgtgactttatgtcc 105

Score = 319 bits (161), Expect(4) = e-172
Identities = 191/201 (95%)
Strand = Plus / Minus


Query: 1623 aacaacaaatggtggaataagtggaggtaatgctatcgcaggcgtaacaacttcaaattc 1682
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 568 aacaacaaatggtggaataagcggaggtaatgctatcgcaggtgtaacaacttcaaattc 509


Query: 1683 aatcgctcaaactggatcagttacaggattaactgcaaatggtattgcaggatcagtcgg 1742
||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 508 aatcgttcaaactggatcagttacaggcttaactgccaatggtattgcaggatcagtcgg 449


Query: 1743 aggtttaacaacagcaaactcattaacaggagtaggttcaattggtaatatcgccaatgc 1802
||| || ||||||||||||||||||||||||| |||||||||| ||||||| ||||||||
Sbjct: 448 aggatttacaacagcaaactcattaacaggagcaggttcaattagtaatattgccaatgc 389


Query: 1803 aatttcaactggtcttgtcgg 1823
|||||||||||||||||||||
Sbjct: 388 aatttcaactggtcttgtcgg 368

Score = 242 bits (122), Expect(4) = e-172
Identities = 139/146 (95%)
Strand = Plus / Minus


Query: 1300 atttcaggttcaattgatggattaacaactgcaaactcattaactggtgtgtcatcaatc 1359
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 atttcaggttcanttgatggattaacaactgcaaactcattaactggtgtgtcatcaatc 793


Query: 1360 gctggtataactaatcaagcatcatcaatcgccaatgcaatttcaggtggtaatattgca 1419
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 gntggtataantaatcaagcatcatcaatcgccaatgcaatttcaggtggtaatattgca 733


Query: 1420 ggtgtaactacatctcaaatttcaac 1445
|| ||| ||||||||||| ||||||
Sbjct: 732 ggcataantacatctcaaagttcaac 707

Score = 109 bits (55), Expect(4) = e-172
Identities = 75/82 (91%)
Strand = Plus / Minus


Query: 1549 ggagttatctctggaggtaatagtgtcgcaggaggatcaggatcagtcggaaatagtggt 1608
||||||||||| ||||| || ||||| ||| ||||||||||||||| ||||||||||||
Sbjct: 645 ggagttatctcaggaggcaacagtgttacagcaggatcaggatcagtnggaaatagtggt 586


Query: 1609 tcaattactggtttaacaacaa 1630
||||||||||||||||||||||
Sbjct: 585 tcaattactggtttaacaacaa 564

Score = 28.2 bits (14), Expect(4) = e-172
Identities = 14/14 (100%)
Strand = Plus / Minus


Query: 1509 tggccaaagttcaa 1522
||||||||||||||
Sbjct: 673 tggccaaagttcaa 660

Score = 172 bits (87), Expect(3) = 1e-48
Identities = 110/118 (93%)
Strand = Plus / Minus


Query: 909 caatcgctcaaactggatcaattacaggnttaattgccaatggtattgcaggatcagtcg 968
|||||| ||||||||||||| ||||||| |||| ||||||||||||||||||||||||||
Sbjct: 509 caatcgttcaaactggatcagttacaggcttaactgccaatggtattgcaggatcagtcg 450


Query: 969 gaggattaacaacagcaaactcattaacaggagtaggttcaattggtaatatcgccaa 1026
||||||| ||||||||||||||||||||||||| |||||||||| ||||||| |||||
Sbjct: 449 gaggatttacaacagcaaactcattaacaggagcaggttcaattagtaatattgccaa 392

Score = 38.2 bits (19), Expect(3) = 1e-48
Identities = 22/23 (95%)
Strand = Plus / Minus


Query: 886 gcaggtgtaccaacttcaaattc 908
||||||||| |||||||||||||
Sbjct: 531 gcaggtgtaacaacttcaaattc 509

Score = 36.2 bits (18), Expect(3) = 1e-48
Identities = 18/18 (100%)
Strand = Plus / Minus


Query: 1026 aatgcaatttcaactggt 1043
||||||||||||||||||
Sbjct: 393 aatgcaatttcaactggt 376

Score = 44.1 bits (22), Expect(4) = 3e-08
Identities = 25/26 (96%)
Strand = Plus / Minus


Query: 971 ggattaacaacagcaaactcattaac 996
||||||||||| ||||||||||||||
Sbjct: 834 ggattaacaactgcaaactcattaac 809

Score = 36.2 bits (18), Expect(4) = 3e-08
Identities = 24/26 (92%)
Strand = Plus / Minus


Query: 2087 ggattaacaactgcaaactcattaac 2112
||||| ||||| ||||||||||||||
Sbjct: 447 ggatttacaacagcaaactcattaac 422

Score = 36.2 bits (18), Expect(4) = 3e-08
Identities = 18/18 (100%)
Strand = Plus / Minus


Query: 1792 atcgccaatgcaatttca 1809
||||||||||||||||||
Sbjct: 765 atcgccaatgcaatttca 748

Score = 30.2 bits (15), Expect(4) = 3e-08
Identities = 15/15 (100%)
Strand = Plus / Minus


Query: 2159 gccaatgcaatttca 2173
|||||||||||||||
Sbjct: 396 gccaatgcaatttca 382

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 2,571,639,867
Number of extensions: 143943305
Number of successful extensions: 11196561
Number of sequences better than 10.0: 161
Length of query: 2946
Length of database: 95,242,211,685
Length adjustment: 25
Effective length of query: 2921
Effective length of database: 97,216,030,006
Effective search space: 283968023647526
Effective search space used: 283968023647526
X1: 11 (21.8 bits)
S2: 23 (46.1 bits)

protein update 2009. 6.29
Homology vs Protein
Query= Contig-U11272-1 (Contig-U11272-1Q) /CSM_Contig/Contig-U11272-1Q.Seq.d
(2946 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

CP001357_2345(CP001357|pid:none) Brachyspira hyodysenteriae WA1,... 40 0.65
CP000473_4220(CP000473|pid:none) Solibacter usitatus Ellin6076, ... 39 0.84
AM910994_372(AM910994|pid:none) Plasmodium knowlesi strain H chr... 39 0.84
AY554167_1(AY554167|pid:none) Nicotiana tabacum putative proline... 39 1.4
CP000939_2981(CP000939|pid:none) Clostridium botulinum B1 str. O... 37 3.2
CP000728_2881(CP000728|pid:none) Clostridium botulinum F str. La... 37 3.2
CP000103_207(CP000103|pid:none) Nitrosospira multiformis ATCC 25... 37 5.5
CP000726_2825(CP000726|pid:none) Clostridium botulinum A str. AT... 36 9.3
AE006641_1974(AE006641|pid:none) Sulfolobus solfataricus P2, com... 36 9.3

>CP001357_2345(CP001357|pid:none) Brachyspira hyodysenteriae WA1,
complete genome.
Length = 659

Score = 39.7 bits (91), Expect = 0.65
Identities = 24/70 (34%), Positives = 34/70 (48%)
Frame = +1

Query: 1 GQGTLSVSGVQPSNNSGIPPIVLTRDHSKAFITSMGNPTTINYQILAPFINVSSIHISYS 180
G G +S+SG GIP ++L + I MG PTT NY I + + I + Y
Sbjct: 457 GAGLISISG-------GIPLLLLFLTMISSIILGMGVPTTANYLITSTIAASAIIGLGYE 509

Query: 181 TLSDSQYVFY 210
L+ +VFY
Sbjct: 510 PLAAHMFVFY 519

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 3,194,037,534
Number of extensions: 53798235
Number of successful extensions: 186285
Number of sequences better than 10.0: 9
Number of HSP's gapped: 184606
Number of HSP's successfully gapped: 9
Length of query: 982
Length of database: 1,040,966,779
Length adjustment: 138
Effective length of query: 844
Effective length of database: 598,775,449
Effective search space: 505366478956
Effective search space used: 505366478956
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.89 gvh: 0.32 alm: 0.35 top: 0.57 tms: 0.00 mit: 0.27 mip: 0.05
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: cytoplasmic
24.0 %: nuclear
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: plasma membrane

>> prediction for Contig-U11272-1 is cyt

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 21
AF (FL, S) 3
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 1
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0