NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U11271-1
Contig ID Contig-U11271-1
Contig update 2002.12.18
Contig sequence 
>Contig-U11271-1 (Contig-U11271-1Q) /CSM_Contig/Contig-U11271-1Q.Seq.d
AAATTATTTTTTTTATTTAAATATTATAAAAAAAAAAATAAACAAAACAT
TCCCACACACACACACACACACACCAACAATACCAACAACAACGGCAGCA
AAAATATATTTTTTTATCACATAAAAAAAAAA----------GTGGACAA
ATAAATATCAATCTGTTCTTGGTAAAGATAAATTCATTTCTTTTGAAAAT
TGGAAAAATATTTATAATTTATGTTTAATTATGGCACATATTTCATTTAC
ATCATGTTTTTTCAAATATGTTCAAATTGATTTCAATTTCTTTGGATCAA
TCTTTTGGAGACAAATTTTAGGTTTAATGTTAATTTTAATCAATTTATGG
AGTTCCTTATCAACATTTGAAGTTTTGGGTGAATTTGGTTGGTTCTATGG
TGATTTCTTCATTGAAGATATTCCATCCAATCTTTATTATACAGGTATCT
ATAGATTTTTAAATAATCCAGATTCTGTAACTGGTTTCGCTGGTTTCTAT
GGTCTCAGTTTAATTGCCGGTAGTTTCCCATTATTTGCCTTGTCAATATT
CTCACAAGTTGCCAATTTCCTCTTTATCAAATTCGTTGAGAAACCACATA
TGAAGAGACTCTATGGAAGTAAAGTACGTTCTCAAAGTGGTATTTCCAAA
GGTATTCAAGAGATTGTCAATGAATTAACTGAAACTTCACCACCAATTCA
AAAATTAGTTACAAAAACTCGTAATCTTACTGAACGTGTTGAAAGAAGAG
TTTCTGATCGTATTAATTCCTTTGTTGATGAACTTCAAAAACATGGTATT
CCATTATCAACTGAACAATTTGAAATTTTAAAAACTTTAAAAGAGAAATA
TAATAATAATAATAATACTTCACCAAGTGATAGTGATAATAATAATAGTA
ATAATAATAATAATAACACTAATAGTAATAATAATAAAAAATCAAAGAAA
ATAGCATCAAATAATAAAAAATTTAAATAAAAAAAAAAAAATAAAAAATA
TATATATCAATAATATCGCAAAAGTATCAATTCCACATTTAAACAATAGT
AAGTACAACCATACTATTATCGATAATAAATCATTAATTAAATTA
Gap gap included
Contig length 1085
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 17
Number of EST 20
Link to clone list U11271
List of clone(s) 

est1=SHK355F,-8,132
est2=AHD459F,1,132
est3=AHK823F,19,132
est4=CHH318F,19,132
est5=CHR123Z,133,868
est6=CHL583Z,141,823
est7=SHK355Z,182,960
est8=AHF569Z,185,898
est9=CHP440Z,205,942
est10=AHB554Z,222,914
est11=CHG684Z,223,954
est12=CHP136Z,294,941
est13=CHK476Z,386,964
est14=CHI888Z,753,1086
est15=CHR374Z,755,1051
est16=AHE673Z,883,1086
est17=CHR773Z,884,1087
est18=AHD459Z,888,1049
est19=CHM236Z,956,1087
est20=AHK823Z,958,1085
Translated Amino Acid sequence 
KLFFLFKYYKKKNKQNIPTHTHTHTNNTNNNGSKNIFFYHIKKK---

---WTNKYQSVLGKDKFISFENWKNIYNLCLIMAHISFTSCFFKYVQIDFNFFGSIFWRQ
ILGLMLILINLWSSLSTFEVLGEFGWFYGDFFIEDIPSNLYYTGIYRFLNNPDSVTGFAG
FYGLSLIAGSFPLFALSIFSQVANFLFIKFVEKPHMKRLYGSKVRSQSGISKGIQEIVNE
LTETSPPIQKLVTKTRNLTERVERRVSDRINSFVDELQKHGIPLSTEQFEILKTLKEKYN
NNNNTSPSDSDNNNSNNNNNNTNSNNNKKSKKIASNNKKFK*kkknkkyiyq*yrksins
tfkq**vqpyyyr**iin*i
Translated Amino Acid sequence (All Frames) 
Frame A:
KLFFLFKYYKKKNKQNIPTHTHTHTNNTNNNGSKNIFFYHIKKK---

---vdk*isicsw*r*ihff*klekyl*fmfnygtyfiyimffqicsn*fqflwinllet
nfrfnvnfnqfmeflini*sfg*iwlvlw*flh*rysiqsllyryl*ifk*srfcnwfrw
flwsqfncr*fpiiclvniltscqfplyqir*ettyeetlwk*stfskwyfqrysrdcq*
in*nfttnskisykns*sy*tc*kksf*sy*flc**tsktwysiin*ti*nfknfkrei*
****yftk*************h******kikensik**ki*ikkkk*kiyisiisqkyqf
hi*tivsttillsiinh*ln

Frame B:
nyffylniikkkinktfphththtptiptttaakiyffit*kk---

---WTNKYQSVLGKDKFISFENWKNIYNLCLIMAHISFTSCFFKYVQIDFNFFGSIFWRQ
ILGLMLILINLWSSLSTFEVLGEFGWFYGDFFIEDIPSNLYYTGIYRFLNNPDSVTGFAG
FYGLSLIAGSFPLFALSIFSQVANFLFIKFVEKPHMKRLYGSKVRSQSGISKGIQEIVNE
LTETSPPIQKLVTKTRNLTERVERRVSDRINSFVDELQKHGIPLSTEQFEILKTLKEKYN
NNNNTSPSDSDNNNSNNNNNNTNSNNNKKSKKIASNNKKFK*kkknkkyiyq*yrksins
tfkq**vqpyyyr**iin*i

Frame C:
iiffi*il*kkk*tkhshthththqqyqqqrqqkyiflshkkk---

---gqininlflvkinsfllkigkifiiyv*lwhifhlhhvfsnmfklisisldqsfgdk
f*v*c*f*siygvpyqhlkfwvnlvgsmvisslkifhpifiiqvsidf*iiqil*lvslv
smvsv*lpvvshylpcqyshklpisslsnslrnhi*rdsmevkyvlkvvfpkvfkrlsmn
*lklhhqfkn*lqklvillnvlkeeflivlipllmnfknmvfhyqlnnlkf*kl*krnii
iiiilhqviviiiiviiiiitliviiiknqrk*hqiiknlnkkkkikniyinniakvsip
hlnnskynhtiidnkslikl
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U11271-1 (Contig-U11271-1Q)
/CSM_Contig/Contig-U11271-1Q.Seq.d
         (1095 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U11271-1 (Contig-U11271-1Q) /CSM_Contig/Conti...  1396  0.0
Contig-U13154-1 (Contig-U13154-1Q) /CSM_Contig/Conti...    48  2e-05
Contig-U08420-1 (Contig-U08420-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U13903-1 (Contig-U13903-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U09451-1 (Contig-U09451-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U05711-1 (Contig-U05711-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U01716-1 (Contig-U01716-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U14146-1 (Contig-U14146-1Q) /CSM_Contig/Conti...    38  0.020
Contig-U12473-1 (Contig-U12473-1Q) /CSM_Contig/Conti...    38  0.020
Contig-U09507-1 (Contig-U09507-1Q) /CSM_Contig/Conti...    38  0.020

>Contig-U11271-1 (Contig-U11271-1Q) /CSM_Contig/Contig-U11271-1Q.Seq.d
          Length = 1095

 Score = 1396 bits (704), Expect = 0.0
 Identities = 704/704 (100%)
 Strand = Plus / Plus

                                                                       
Query: 143 gtggacaaataaatatcaatctgttcttggtaaagataaattcatttcttttgaaaattg 202
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 gtggacaaataaatatcaatctgttcttggtaaagataaattcatttcttttgaaaattg 202

                                                                       
Query: 203 gaaaaatatttataatttatgtttaattatggcacatatttcatttacatcatgtttttt 262
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaaaaatatttataatttatgtttaattatggcacatatttcatttacatcatgtttttt 262

                                                                       
Query: 263 caaatatgttcaaattgatttcaatttctttggatcaatcttttggagacaaattttagg 322
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 caaatatgttcaaattgatttcaatttctttggatcaatcttttggagacaaattttagg 322

                                                                       
Query: 323 tttaatgttaattttaatcaatttatggagttccttatcaacatttgaagttttgggtga 382
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tttaatgttaattttaatcaatttatggagttccttatcaacatttgaagttttgggtga 382

                                                                       
Query: 383 atttggttggttctatggtgatttcttcattgaagatattccatccaatctttattatac 442
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 atttggttggttctatggtgatttcttcattgaagatattccatccaatctttattatac 442

                                                                       
Query: 443 aggtatctatagatttttaaataatccagattctgtaactggtttcgctggtttctatgg 502
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aggtatctatagatttttaaataatccagattctgtaactggtttcgctggtttctatgg 502

                                                                       
Query: 503 tctcagtttaattgccggtagtttcccattatttgccttgtcaatattctcacaagttgc 562
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tctcagtttaattgccggtagtttcccattatttgccttgtcaatattctcacaagttgc 562

                                                                       
Query: 563 caatttcctctttatcaaattcgttgagaaaccacatatgaagagactctatggaagtaa 622
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 caatttcctctttatcaaattcgttgagaaaccacatatgaagagactctatggaagtaa 622

                                                                       
Query: 623 agtacgttctcaaagtggtatttccaaaggtattcaagagattgtcaatgaattaactga 682
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 agtacgttctcaaagtggtatttccaaaggtattcaagagattgtcaatgaattaactga 682

                                                                       
Query: 683 aacttcaccaccaattcaaaaattagttacaaaaactcgtaatcttactgaacgtgttga 742
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 aacttcaccaccaattcaaaaattagttacaaaaactcgtaatcttactgaacgtgttga 742

                                                                       
Query: 743 aagaagagtttctgatcgtattaattcctttgttgatgaacttcaaaaacatggtattcc 802
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 aagaagagtttctgatcgtattaattcctttgttgatgaacttcaaaaacatggtattcc 802

                                                       
Query: 803 attatcaactgaacaatttgaaattttaaaaactttaaaagaga 846
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 attatcaactgaacaatttgaaattttaaaaactttaaaagaga 846


 Score =  192 bits (97), Expect = 6e-49
 Identities = 97/97 (100%)
 Strand = Plus / Plus

                                                                        
Query: 999  tatatatatcaataatatcgcaaaagtatcaattccacatttaaacaatagtaagtacaa 1058
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 999  tatatatatcaataatatcgcaaaagtatcaattccacatttaaacaatagtaagtacaa 1058

                                                 
Query: 1059 ccatactattatcgataataaatcattaattaaatta 1095
            |||||||||||||||||||||||||||||||||||||
Sbjct: 1059 ccatactattatcgataataaatcattaattaaatta 1095


 Score = 67.9 bits (34), Expect = 2e-11
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                             
Query: 75  caacaataccaacaacaacggcagcaaaaatata 108
           ||||||||||||||||||||||||||||||||||
Sbjct: 75  caacaataccaacaacaacggcagcaaaaatata 108


 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 1  aaattattttttttatttaaatattat 27
          |||||||||||||||||||||||||||
Sbjct: 1  aaattattttttttatttaaatattat 27


 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                           
Query: 7   ttttttttatttaaat 22
           ||||||||||||||||
Sbjct: 986 ttttttttatttaaat 971


>Contig-U13154-1 (Contig-U13154-1Q) /CSM_Contig/Contig-U13154-1Q.Seq.d
          Length = 116

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 1  aaattattttttttatttaaatattat 27
          |||| ||||||||||||||||||||||
Sbjct: 33 aaatnattttttttatttaaatattat 59


>Contig-U08420-1 (Contig-U08420-1Q) /CSM_Contig/Contig-U08420-1Q.Seq.d
          Length = 1194

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 7  ttttttttatttaaatattat 27
          |||||||||||||||||||||
Sbjct: 40 ttttttttatttaaatattat 20


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 24,260
Number of Sequences: 6905
Number of extensions: 24260
Number of successful extensions: 3531
Number of sequences better than 10.0: 685
length of query: 1095
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1079
effective length of database: 5,564,391
effective search space: 6003977889
effective search space used: 6003977889
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.23
Homology vs DNA 
Query= Contig-U11271-1 (Contig-U11271-1Q) /CSM_Contig/Contig-U11271-1Q.Seq.d
         (1095 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ382761) Dictyostelium discoideum cDNA clone:ddc45e21, 3' ...  1352   0.0    1
(BJ408094) Dictyostelium discoideum cDNA clone:dds44n13, 3' ...  1298   0.0    1
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...  1267   0.0    1
(BJ351266) Dictyostelium discoideum cDNA clone:dda42i17, 3' ...  1267   0.0    1
(BJ383281) Dictyostelium discoideum cDNA clone:ddc52p10, 3' ...  1253   0.0    1
(BJ379736) Dictyostelium discoideum cDNA clone:ddc35g22, 3' ...  1217   0.0    1
(BJ348869) Dictyostelium discoideum cDNA clone:dda34k13, 3' ...  1213   0.0    1
(BJ385795) Dictyostelium discoideum cDNA clone:ddc56m05, 3' ...  1122   0.0    2
(BJ383237) Dictyostelium discoideum cDNA clone:ddc52g09, 3' ...  1078   0.0    1
(BJ381838) Dictyostelium discoideum cDNA clone:ddc42h20, 3' ...   888   0.0    1
(BJ382928) Dictyostelium discoideum cDNA clone:ddc46g10, 3' ...    98   9e-24  2
(BJ380988) Dictyostelium discoideum cDNA clone:ddc39p22, 3' ...    62   2e-21  3
(BJ354000) Dictyostelium discoideum cDNA clone:dda52n06, 3' ...    74   3e-20  2
(BJ386291) Dictyostelium discoideum cDNA clone:ddc57b19, 3' ...    84   7e-18  2
(BJ350696) Dictyostelium discoideum cDNA clone:dda40a20, 3' ...    76   2e-15  2
(BJ385979) Dictyostelium discoideum cDNA clone:ddc56d19, 3' ...    78   1e-14  2
(BJ331924) Dictyostelium discoideum cDNA clone:dda37f16, 5' ...    68   3e-11  3
(BJ396991) Dictyostelium discoideum cDNA clone:dds44n13, 5' ...    68   4e-11  3
(AL408511) T7 end of clone AV0AA009A03 of library AV0AA from...    54   3e-10  2
(BJ335957) Dictyostelium discoideum cDNA clone:dda52n06, 5' ...    68   3e-10  2
(DY890671) CeleSEQ9868 Cunninghamella elegans pBluescript (E...    76   3e-09  1
(BJ365629) Dictyostelium discoideum cDNA clone:ddc36d05, 5' ...    68   4e-08  2
(EX812664) CBNA3063.fwd CBNA Phycomyces blakesleeanus NRRL15...    46   2e-04  2
(AZ928498) 479.dif10d07.s1 Saccharomyces kluyveri Lachancea ...    58   7e-04  1
(AL406557) T3 end of clone AU0AA010H06 of library AU0AA from...    58   7e-04  1
(CE667912) tigr-gss-dog-17000329268337 Dog Library Canis lup...    52   0.045  1
(CE040209) tigr-gss-dog-17000349985883 Dog Library Canis lup...    52   0.045  1
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    52   0.045  1
(AB354124) Onion yellows phytoplasma OY-W genes for hypothet...    46   0.088  2
(AP004984) Lotus japonicus genomic DNA, chromosome 1, clone:...    36   0.13   4
(AC024763) Caenorhabditis elegans cosmid Y39A3CL, complete s...    36   0.15   6
(AC225411) Tupaia belangeri clone CH275-253D19, WORKING DRAF...    50   0.18   1
(AC180806) Strongylocentrotus purpuratus clone R3-3071I04, W...    50   0.18   1
(AC180198) Strongylocentrotus purpuratus clone R3-3G17, WORK...    50   0.18   1
(AC179641) Strongylocentrotus purpuratus clone R3-1024O21, W...    50   0.18   1
(DX090275) AU_BAC027A1A10_Sp6 CHORI212 Ictalurus punctatus g...    50   0.18   1
(AM463743) Vitis vinifera contig VV78X199876.2, whole genome...    44   0.26   2
(AC115680) Dictyostelium discoideum chromosome 2 map 4915084...    36   0.37   7
(AZ178969) SP_0162_B2_H02_T7A Strongylocentrotus purpuratus,...    36   0.52   2
(ER301953) 1092343709940 Global-Ocean-Sampling_GS-34-01-01-1...    34   0.53   3
(U41510) Caenorhabditis elegans cosmid ZC449, complete seque...    38   0.53   3
(AM473525) Vitis vinifera contig VV78X199876.3, whole genome...    44   0.66   2
(AC226052) Musa balbisiana clone BAC MBP-64B17, complete seq...    48   0.71   1
(AJ279060) Dictyostelium discoideum gdt1 gene for hypothetic...    48   0.71   1
(AJ000992) Dictyostelium discoideum gdt1 gene.                     48   0.71   1
(AC173908) Microcebus murinus clone CH257-252D16, WORKING DR...    48   0.71   1
(EJ098564) 1095462325569 Global-Ocean-Sampling_GS-26-01-01-1...    48   0.71   1
(AE008622) Rickettsia conorii str. Malish 7, section 54 of 1...    40   0.73   3
(AM443161) Vitis vinifera contig VV79X000920.1, whole genome...    42   0.87   2
(BD452870) Diagnosis of Diseases Associated with tumor suppr...    36   1.1    4
(AX251349) Sequence 317 from Patent WO0168912.                     36   1.1    4
(AL132862) Caenorhabditis elegans YAC Y73F8A.                      36   1.2    8
(BH480173) BOGUD82TR BOGU Brassica oleracea genomic clone BO...    32   1.2    3
(AC202312) Medicago truncatula clone mth2-12k7, WORKING DRAF...    32   1.5    7
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    30   1.9    17
(DR098008) STRR1_38_C04.g1_A033 Stem Response Resistant Pinu...    34   1.9    2
(AJ585374) Dictyostelium discoideum phg2 mRNA for Phagocytos...    38   1.9    3
(AM451133) Vitis vinifera contig VV78X062997.4, whole genome...    46   2.0    3
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214...    32   2.1    9
(EJ950116) 1093018939114 Global-Ocean-Sampling_GS-30-02-01-1...    44   2.7    2
(AC231347) Medicago truncatula clone mth2-106e14, WORKING DR...    46   2.7    3
(BX511004) Zebrafish DNA sequence from clone RP71-45K5 in li...    46   2.8    1
(CU638744) Podospora anserina genomic DNA chromosome 6, supe...    46   2.8    1
(AC146586) Medicago truncatula chromosome 8 clone mth2-71m12...    46   2.8    1
(AM910995) Plasmodium knowlesi strain H chromosome 13, compl...    46   2.8    1
(CU571277) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.8    1
(CU179628) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.8    1
(AC196272) Zea mays chromosome 4 clone CH201-240C7; ZMMBBc02...    46   2.8    1
(AC189337) Brassica rapa subsp. pekinensis clone KBrB039P21,...    46   2.8    1
(AC182162) Bos taurus clone CH240-512H17, WORKING DRAFT SEQU...    46   2.8    1
(AC170718) Atelerix albiventris clone LB4-33L18, WORKING DRA...    46   2.8    1
(ER346264) 1092345176856 Global-Ocean-Sampling_GS-34-01-01-1...    46   2.8    1
(EK516046) 1095515499599 Global-Ocean-Sampling_GS-32-01-01-1...    46   2.8    1
(EJ675777) 1092955079636 Global-Ocean-Sampling_GS-30-02-01-1...    46   2.8    1
(ED317961) AUAC-aat94a02.b1 Ascaris suum whole genome shotgu...    46   2.8    1
(DU943880) 363790 Tomato EcoRI BAC Library Solanum lycopersi...    46   2.8    1
(DU806155) OG_ABa0097B07.f OG_ABa Oryza granulata genomic cl...    46   2.8    1
(DU022206) 1954 Tomato HindIII BAC Library Solanum lycopersi...    46   2.8    1
(DU016581) 239083 Tomato MboI BAC Library Solanum lycopersic...    46   2.8    1
(DU011511) 228746 Tomato MboI BAC Library Solanum lycopersic...    46   2.8    1
(CT288255) Sus scrofa genomic clone CH242-261E22, genomic su...    46   2.8    1
(BZ786819) PUFGB27TD ZM_0.6_1.0_KB Zea mays genomic clone ZM...    46   2.8    1
(EB605036) AGENCOURT_54975502 D. mojavensis EST Drosophila m...    46   2.8    1
(DV613849) EST1216845 Glossina morsitans morsitans Fat body ...    46   2.8    1
(DV610150) EST1213146 Glossina morsitans morsitans Fat body ...    46   2.8    1
(DV610149) EST1213145 Glossina morsitans morsitans Fat body ...    46   2.8    1
(DT517864) WS02435.B21_I11 PTxD-ICC-N-A-14 Populus trichocar...    46   2.8    1
(DT471115) WS01212.BR_F15 PT-GT-FL-A-3 Populus trichocarpa c...    46   2.8    1
(CX174758) F07_69-38_11.ab1 leaf inoculated with Marssonia p...    46   2.8    1
(CU898476) Podospora anserina mRNA sequence from clone HH0AB...    46   2.8    1
(AM104625) Lutzomyia longipalpis EST clone SFM-02b05, sequen...    46   2.8    1
(CN522863) GQ0122.B3_M19 GQ012 Populus trichocarpa x Populus...    46   2.8    1
(CK112326) R057B11 Populus root cDNA library Populus tremula...    46   2.8    1
(CK103297) G111P61.5pR Populus tension wood cDNA library Pop...    46   2.8    1
(AJ407251) Populus tremula x Populus tremuloides/Amanita mus...    46   2.8    1
(CB831159) ri21h04.y1 Meloidogyne chitwoodi egg pAMP1 v1 Mel...    46   2.8    1
(CA157337) SCEQRZ3091F02.g RZ3 Saccharum officinarum cDNA cl...    46   2.8    1
(AI584310) fb83h09.x1 Zebrafish WashU MPIMG EST Danio rerio ...    46   2.8    1
(BU887270) R057BB11 Populus root cDNA library Populus tremul...    46   2.8    1
(BU820103) UA51CPC10 Populus tremula cambium cDNA library Po...    46   2.8    1

>(BJ382761) Dictyostelium discoideum cDNA clone:ddc45e21, 3' end,
           single read.
          Length = 682

 Score = 1352 bits (682), Expect = 0.0
 Identities = 682/682 (100%)
 Strand = Plus / Minus


Query: 151 ataaatatcaatctgttcttggtaaagataaattcatttcttttgaaaattggaaaaata 210
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ataaatatcaatctgttcttggtaaagataaattcatttcttttgaaaattggaaaaata 623


Query: 211 tttataatttatgtttaattatggcacatatttcatttacatcatgttttttcaaatatg 270
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tttataatttatgtttaattatggcacatatttcatttacatcatgttttttcaaatatg 563


Query: 271 ttcaaattgatttcaatttctttggatcaatcttttggagacaaattttaggtttaatgt 330
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ttcaaattgatttcaatttctttggatcaatcttttggagacaaattttaggtttaatgt 503


Query: 331 taattttaatcaatttatggagttccttatcaacatttgaagttttgggtgaatttggtt 390
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 taattttaatcaatttatggagttccttatcaacatttgaagttttgggtgaatttggtt 443


Query: 391 ggttctatggtgatttcttcattgaagatattccatccaatctttattatacaggtatct 450
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ggttctatggtgatttcttcattgaagatattccatccaatctttattatacaggtatct 383


Query: 451 atagatttttaaataatccagattctgtaactggtttcgctggtttctatggtctcagtt 510
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 atagatttttaaataatccagattctgtaactggtttcgctggtttctatggtctcagtt 323


Query: 511 taattgccggtagtttcccattatttgccttgtcaatattctcacaagttgccaatttcc 570
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 taattgccggtagtttcccattatttgccttgtcaatattctcacaagttgccaatttcc 263


Query: 571 tctttatcaaattcgttgagaaaccacatatgaagagactctatggaagtaaagtacgtt 630
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tctttatcaaattcgttgagaaaccacatatgaagagactctatggaagtaaagtacgtt 203


Query: 631 ctcaaagtggtatttccaaaggtattcaagagattgtcaatgaattaactgaaacttcac 690
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ctcaaagtggtatttccaaaggtattcaagagattgtcaatgaattaactgaaacttcac 143


Query: 691 caccaattcaaaaattagttacaaaaactcgtaatcttactgaacgtgttgaaagaagag 750
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 caccaattcaaaaattagttacaaaaactcgtaatcttactgaacgtgttgaaagaagag 83


Query: 751 tttctgatcgtattaattcctttgttgatgaacttcaaaaacatggtattccattatcaa 810
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82  tttctgatcgtattaattcctttgttgatgaacttcaaaaacatggtattccattatcaa 23


Query: 811 ctgaacaatttgaaattttaaa 832
           ||||||||||||||||||||||
Sbjct: 22  ctgaacaatttgaaattttaaa 1

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,179,992,726
Number of extensions: 75512110
Number of successful extensions: 6458316
Number of sequences better than 10.0: 152
Length of query: 1095
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1071
Effective length of database: 97,308,875,965
Effective search space: 104217806158515
Effective search space used: 104217806158515
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.29
Homology vs Protein 
Query= Contig-U11271-1 (Contig-U11271-1Q) /CSM_Contig/Contig-U11271-1Q.Seq.d
         (1095 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE017347_437(AE017347|pid:none) Cryptococcus neoformans var. neo...   177   6e-43
AP007161_172(AP007161|pid:none) Aspergillus oryzae RIB40 genomic...   149   1e-34
(O74787) RecName: Full=Phosphatidylethanolamine N-methyltransfer...   147   6e-34
BX897675_13(BX897675|pid:none) Neurospora crassa DNA linkage gro...   139   2e-31
CT005268_321(CT005268|pid:none) Leishmania major strain Friedlin...   136   1e-30
AM494968_356(AM494968|pid:none) Leishmania braziliensis chromoso...   134   4e-30
CR382133_545(CR382133|pid:none) Debaryomyces hansenii strain CBS...   107   1e-21
FM992695_220(FM992695|pid:none) Candida dubliniensis CD36 chromo...    98   4e-19
FN392319_861(FN392319|pid:none) Pichia pastoris GS115 chromosome...    86   2e-15
(Q54H80) RecName: Full=PEMT/PEM2 methyltransferase family protei...    44   0.008
CP000449_2327(CP000449|pid:none) Maricaulis maris MCS10, complet...    41   0.064
CP000449_1023(CP000449|pid:none) Maricaulis maris MCS10, complet...    41   0.064
AC151708_3(AC151708|pid:none) Medicago truncatula clone mth2-15h...    40   0.11
CP001291_1090(CP001291|pid:none) Cyanothece sp. PCC 7424, comple...    39   0.42
BA000040_7013(BA000040|pid:none) Bradyrhizobium japonicum USDA 1...    38   0.71
AY596295_81(AY596295|pid:none) Haloarcula marismortui ATCC 43049...    36   2.7
CP000251_3793(CP000251|pid:none) Anaeromyxobacter dehalogenans 2...    36   2.7
CP000885_1513(CP000885|pid:none) Clostridium phytofermentans ISD...    35   3.5
BX294153_40(BX294153|pid:none) Rhodopirellula baltica SH 1 compl...    35   3.5
(Q37371) RecName: Full=NADH-ubiquinone oxidoreductase chain 6;  ...    35   4.6
CP000724_4534(CP000724|pid:none) Alkaliphilus metalliredigens QY...    35   4.6
AY318871_168(AY318871|pid:none) Canarypox virus strain ATCC VR-1...    35   4.6
CP000758_2095(CP000758|pid:none) Ochrobactrum anthropi ATCC 4918...    35   4.6
AP009178_181(AP009178|pid:none) Nitratiruptor sp. SB155-2 genomi...    35   6.0
CP000806_3482(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu...    35   6.0
AP009351_1715(AP009351|pid:none) Staphylococcus aureus subsp. au...    34   7.8
CP000962_485(CP000962|pid:none) Clostridium botulinum A3 str. Lo...    34   7.8
AF335994_9(AF335994|pid:none) Lepidopsocid RS-2001 mitochondrion...    34   7.8
BA000033_1758(BA000033|pid:none) Staphylococcus aureus subsp. au...    34   7.8
CU861906_30(CU861906|pid:none) Ralstonia solanacearum strain Mol...    34   7.8

>AE017347_437(AE017347|pid:none) Cryptococcus neoformans var.
            neoformans JEC21 chromosome 7, complete sequence.
          Length = 1176

 Score =  177 bits (449), Expect = 6e-43
 Identities = 93/235 (39%), Positives = 150/235 (63%), Gaps = 8/235 (3%)
 Frame = +3

Query: 159  QSVLGKDKFISFENWKNIYNLCLIMAHISFTSCFFK--YVQIDFNFFGSIFWRQILGLML 332
            +SV+ +    SF NW+ +YN+ L+M ++SF    +K  ++  D+   G++  R +LGL L
Sbjct: 568  ESVVKRATEESFGNWQVMYNISLVMTYVSFVGLAWKTYHLPSDWTVSGTML-RHVLGLSL 626

Query: 333  ILINLWSSLSTFEVLGEFGWFYGDFF-IEDIPSNLYYTGIYRFLNNPDSVTGFAGFYGLS 509
            I +++WS++S++EVLG+FGW Y DFF IE IPS L YTGIYRFLNNP+   G A F+GL
Sbjct: 627  IALHIWSAVSSYEVLGDFGWLYSDFFLIEQIPSQLAYTGIYRFLNNPERSMGGAAFFGLW 686

Query: 510  LIAGSFPLFALSIFSQVANFLFIKFVEKPHMKRLYGSKVRSQSGISKGIQEIVNELTET- 686
            LI+ S  +FAL++ S ++++ F+ FVE+PHM+RLYG ++R   G+ K ++ +  +   T
Sbjct: 687  LISNSKLVFALALASHLSHWWFLTFVERPHMQRLYGKRLRKDGGLIKTLKNVAGKTIATK 746

Query: 687  ----SPPIQKLVTKTRNLTERVERRVSDRINSFVDELQKHGIPLSTEQFEILKTL 839
                +  IQ++V + R   E+VE +V++ +  F+D    H  P+ T+     + L
Sbjct: 747  TGKHAHDIQRVVQEVRGSIEKVEEKVTEAVEEFLD----HARPMFTDMVHDTRVL 797

 Score = 91.3 bits (225), Expect = 5e-17
 Identities = 61/215 (28%), Positives = 114/215 (53%), Gaps = 13/215 (6%)
 Frame = +3

Query: 153 KYQSVLGKDKFISFENWKNIYNLCLIMAHISFTSCFFKYVQIDFNFFGSI---FWRQILG 323
           K++SV    +F ++  ++ + ++ L+   +S+ SCF  +  + F    S+    +R + G
Sbjct: 187 KWESV--PQEFNAWLMFRQLVDVVLLNDFVSY-SCF-AWANLHFPPNHSVSMHIFRWVFG 242

Query: 324 LMLILINLWSSLSTFEVLGEFGWFYGD-FFIEDIPSNLYYTGIYRFLNNPDSVTGFAGFY 500
             LIL NLW  +    V+ ++ W++GD F++  +  +L + G+Y    +P    G+AG+Y
Sbjct: 243 WTLILFNLWVKMDAHRVVKDYAWYWGDAFWLMVMQHDLVFDGVYEIAPHPMYSVGYAGYY 302

Query: 501 GLSLIAGSFPLFALSIFSQVANFLFIKFVEKPHMKRLYG-------SKVRSQSGISKGIQ 659
           GLS++ GS+ +  +S+ +  A F F+ + E PH++R YG       S+V      ++  Q
Sbjct: 303 GLSMVVGSYTVLFVSLAAHAAQFAFLLWFENPHIERTYGGGKKPLASRVPLAWEQTEYEQ 362

Query: 660 EIVNELTETSPPIQKLVT--KTRNLTERVERRVSD 758
           E V E + T+    +  T   T     R+E+R+SD
Sbjct: 363 EQVEESSTTTVEASEAPTPSATEGKCIRIEKRISD 397

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,298,349,414
Number of extensions: 25178284
Number of successful extensions: 72529
Number of sequences better than 10.0: 30
Number of HSP's gapped: 72453
Number of HSP's successfully gapped: 39
Length of query: 365
Length of database: 1,040,966,779
Length adjustment: 130
Effective length of query: 235
Effective length of database: 624,409,729
Effective search space: 146736286315
Effective search space used: 146736286315
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.47  gvh: 0.05  alm: 0.31  top: 0.83  tms: 0.07  mit: 0.33  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: cytoplasmic
	 28.0 %: nuclear
	 20.0 %: mitochondrial
	  8.0 %: plasma membrane
	  8.0 %: endoplasmic reticulum
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for Contig-U11271-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 5
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 1
SF (FL, S) 0
CH (FL, L) 11
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0