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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U11267-1
Contig ID Contig-U11267-1
Contig update 2002.12.18
Contig sequence 
>Contig-U11267-1 (Contig-U11267-1Q) /CSM_Contig/Contig-U11267-1Q.Seq.d
ACTGTTGGCCTACTGGNAATTTTAAATTATTGTAGTTAGTTTATCATTAT
TTTGTTTTATCTTTTTTTTATTTATTTATTCAATAATTGTGTGTGTGTAT
CTTTATTTCGTACATAATTTCTTTTAATAAATAATTTAAACAACATAAAA
AAAAAAAAAAAAAAAATAATAATAATAATAATTTTAAATAATAATTTTTT
TTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----
------GTTCAATTCAAGTGACAAGATTCCAATCAACTTCAAACACAACT
AAAATTTTATTATATTCAGATTCAAATCCACATTATAATGAAATTTTAGA
TGATTTTGGTAAAAATGAAATATCATGTCAAGAAAAGATTTTATGGGCAA
ATTATACTTATATTAACCCAGATAAAGTTGGTGAAATTACAAATTCAAAT
CGTAATTATAATGTTAAAAAAGTTTCACAAAGTCGTGATCGTTTCTGGAT
AATTACAATGGCTGATTGTGATCAAAAATTCATTGATGATCATAGAATTC
CATTTGTATCGACCTATACATTTGAAGTTCAAAATAGTGGTGATTCATTC
GATAGTCAATTATCAGCAGAACAACAATCAATTCCACAAGGTCAAATCTT
TTTCTTCCTTTTATATACTGCATTTTTAATTATATCAATTATCTATTCAG
TAGCTTTAAAGAAAAAAGGATTAGAAGGTAAAGCAATTCATTTCTTTATT
GCAATTTTATTAATATTTTTAATTTCACTTGCACTTTATATTTCAAATTG
GGCACATATATTAAAATATCATAAATATGAATTAAGATATTTAAATCTTT
TTGGTAATATTTTTGAAATTTTAGGTAATGGTTTATTTGTAGCATTAATT
TTAATGATTGGCCAAGGTTGGACTACTTCAATTTATTTTGGATCATTAGT
TAAACAAATGATAAATATATTAGTTTCAATTGCATTGATTGTTATTGGGT
GGGTTGCATATGTTTATTATGTTTATCATTCAAAGGAACAAAATAGTTAT
ATTTATTTCATGGATACTTGTCCAGGTTACTTTTTATTGGCATTATATGT
TGTAATCATTGGTTATTTCTGTTGGGCAAATTATGTAAATCGTAACAAAC
AAAATGAATCAATTAAAAAGAATTTTATTTTAATTTTTACAATCATCTTT
GTATTTTGGTTAATTAGTCATCCATTGGTTGTAATCGTTGCTCATTTCAT
GGATCCATGGGTTAAATATAAAGTCATCGCTTTATTAAATTTAACAATCA
ATGCAATCTTTTTCATCATTCTCTTAATAATTTTCCGTCCATCTCATAAT
AATATGATTGTTAAAATTTTACAATCTGATGATAAATCAAATGATATGAA
AGAAATTATTGAAAATGAAAAATCATATAATGGTGCAGATTAAGAGATTT
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTATAAAAAATTTATAA
AATAAATAAAATAAAATATAATATCAATAATAATAATAATAATAATAATA
ATAATAATAAAATGAAATAAATAAAATGTTTTCCCAAGTTTTTTTAAAAA
AAAA
Gap gap included
Contig length 1594
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 472167
End point 473747
Strand (PLUS/MINUS) PLUS
Number of clones 18
Number of EST 20
Link to clone list U11267
List of clone(s) 

est1=AHD365F,1,214
est2=SFK293F,48,156
est3=SSM283F,61,247
est4=SSI528F,248,811
est5=CFK450Z,655,1440
est6=CFK474Z,657,1335
est7=AHD365Z,659,1210
est8=SFD173Z,725,1335
est9=CFI558Z,734,1206
est10=SSC809Z,763,1444
est11=AFC231Z,787,1338
est12=SSD406Z,820,1455
est13=SSC456Z,825,1453
est14=SSJ775Z,954,1446
est15=SSB439Z,961,1457
est16=SSJ660Z,1012,1486
est17=SSC818Z,1093,1595
est18=CFG676Z,1220,1440
est19=CFG676F,1252,1453
est20=SSD852E,1334,1596
Translated Amino Acid sequence 
tvgllxilnycs*fiiilfylffiylfnncvcvslfrt*FLLINNLNNIKKKKKKIIIII
ILNNNFFYKKKKKKKKKKKKKK---

---SIQVTRFQSTSNTTKILLYSDSNPHYNEILDDFGKNEISCQEKILWANYTYINPDKV
GEITNSNRNYNVKKVSQSRDRFWIITMADCDQKFIDDHRIPFVSTYTFEVQNSGDSFDSQ
LSAEQQSIPQGQIFFFLLYTAFLIISIIYSVALKKKGLEGKAIHFFIAILLIFLISLALY
ISNWAHILKYHKYELRYLNLFGNIFEILGNGLFVALILMIGQGWTTSIYFGSLVKQMINI
LVSIALIVIGWVAYVYYVYHSKEQNSYIYFMDTCPGYFLLALYVVIIGYFCWANYVNRNK
QNESIKKNFILIFTIIFVFWLISHPLVVIVAHFMDPWVKYKVIALLNLTINAIFFIILLI
IFRPSHNNMIVKILQSDDKSNDMKEIIENEKSYNGAD*ei*kkkkkkkkkkiiknl*nk*
nki*yq***********neinkmfsqvflkk
Translated Amino Acid sequence (All Frames) 
Frame A:
tvgllxilnycs*fiiilfylffiylfnncvcvslfrt*FLLINNLNNIKKKKKKIIIII
ILNNNFFYKKKKKKKKKKKKKK---

---vqfk*qdsnqlqtqlkfyyiqiqihiimkf*milvkmkyhvkkrfygqiililtqik
lvklqiqiviimlkkfhkvvivsg*lqwliviknslmiiefhlyrpihlkfkivvihsiv
nyqqnnnqfhkvksfssfyilhf*lyqlsiq*l*rkkd*kvkqfisllqfy*yf*fhlhf
ifqighiy*niinmn*di*iflviflkf*vmvyl*h*f**lakvgllqfildh*lnk**i
y*fqlh*lllgglhmfimfiiqrnkivifiswilvqvtfywhyml*slvisvgqim*ivt
nkmnqlkrilf*flqsslyfg*lvihwl*slliswihglnikssly*i*qsmqsfssfs*
*fsvhliii*llkfynlminqmi*kkllkmknhimvqikrfkkkkkkkkkkkl*kiykin
kikyninnnnnnnnnnnkmk*ikcfpkff*kk

Frame B:
llaywxf*iivvslslfcfifflfiysiivcvylyfvhnff**ii*tt*kkkkkk*****
f*iiiffikkkkkkkkkkkkk---

---fnssdkipinfkhn*nfiifrfkstl**nfr*fw*k*nimsrkdfmgklyly*pr*s
w*nykfks*l*c*ksftks*sfldnyng*l*skih**s*nsicidlyi*ssk*w*fir*s
iisrttinstrsnlflpfiycifnyinylfssfkekrirr*snsflycnfinifnftctl
yfklgtyikis*i*ikifksfw*yf*nfr*wficsinfndwprldyfnlfwiis*tndky
isfncidcywvgcicllclsfkgtk*lylfhgylsrllfigiiccnhwlfllgklcks*q
tk*in*kefyfnfynhlcilvn*ssigcnrcsfhgsmg*i*shrfikfnnqcnlfhhsln
nfpsis**ydc*nfti***ik*yerny*k*kii*wcrlrdlkkkkkkkkkknykkfik*i
k*niisiiiiiiiiiiik*nk*nvfpsffkkk

Frame C:
cwptgnfkll*lvyhyfvlsffylfiq*lcvcifisyiisfnk*fkqhkkkkkknnnnnn
fk**ffl*kkkkkkkkkkkkk---

---SIQVTRFQSTSNTTKILLYSDSNPHYNEILDDFGKNEISCQEKILWANYTYINPDKV
GEITNSNRNYNVKKVSQSRDRFWIITMADCDQKFIDDHRIPFVSTYTFEVQNSGDSFDSQ
LSAEQQSIPQGQIFFFLLYTAFLIISIIYSVALKKKGLEGKAIHFFIAILLIFLISLALY
ISNWAHILKYHKYELRYLNLFGNIFEILGNGLFVALILMIGQGWTTSIYFGSLVKQMINI
LVSIALIVIGWVAYVYYVYHSKEQNSYIYFMDTCPGYFLLALYVVIIGYFCWANYVNRNK
QNESIKKNFILIFTIIFVFWLISHPLVVIVAHFMDPWVKYKVIALLNLTINAIFFIILLI
IFRPSHNNMIVKILQSDDKSNDMKEIIENEKSYNGAD*ei*kkkkkkkkkkiiknl*nk*
nki*yq***********neinkmfsqvflkk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U11267-1 (Contig-U11267-1Q)
/CSM_Contig/Contig-U11267-1Q.Seq.d
         (1604 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U11267-1 (Contig-U11267-1Q) /CSM_Contig/Conti...  2367  0.0
Contig-U13994-1 (Contig-U13994-1Q) /CSM_Contig/Conti...    48  3e-05
Contig-U13028-1 (Contig-U13028-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U12760-1 (Contig-U12760-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U04970-1 (Contig-U04970-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U14075-1 (Contig-U14075-1Q) /CSM_Contig/Conti...    44  5e-04
Contig-U11292-1 (Contig-U11292-1Q) /CSM_Contig/Conti...    44  5e-04
Contig-U03230-1 (Contig-U03230-1Q) /CSM_Contig/Conti...    44  5e-04
Contig-U14514-1 (Contig-U14514-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U13992-1 (Contig-U13992-1Q) /CSM_Contig/Conti...    42  0.002

>Contig-U11267-1 (Contig-U11267-1Q) /CSM_Contig/Contig-U11267-1Q.Seq.d
          Length = 1604

 Score = 2367 bits (1194), Expect = 0.0
 Identities = 1194/1194 (100%)
 Strand = Plus / Plus

                                                                        
Query: 257  gttcaattcaagtgacaagattccaatcaacttcaaacacaactaaaattttattatatt 316
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257  gttcaattcaagtgacaagattccaatcaacttcaaacacaactaaaattttattatatt 316

                                                                        
Query: 317  cagattcaaatccacattataatgaaattttagatgattttggtaaaaatgaaatatcat 376
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317  cagattcaaatccacattataatgaaattttagatgattttggtaaaaatgaaatatcat 376

                                                                        
Query: 377  gtcaagaaaagattttatgggcaaattatacttatattaacccagataaagttggtgaaa 436
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377  gtcaagaaaagattttatgggcaaattatacttatattaacccagataaagttggtgaaa 436

                                                                        
Query: 437  ttacaaattcaaatcgtaattataatgttaaaaaagtttcacaaagtcgtgatcgtttct 496
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437  ttacaaattcaaatcgtaattataatgttaaaaaagtttcacaaagtcgtgatcgtttct 496

                                                                        
Query: 497  ggataattacaatggctgattgtgatcaaaaattcattgatgatcatagaattccatttg 556
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497  ggataattacaatggctgattgtgatcaaaaattcattgatgatcatagaattccatttg 556

                                                                        
Query: 557  tatcgacctatacatttgaagttcaaaatagtggtgattcattcgatagtcaattatcag 616
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557  tatcgacctatacatttgaagttcaaaatagtggtgattcattcgatagtcaattatcag 616

                                                                        
Query: 617  cagaacaacaatcaattccacaaggtcaaatctttttcttccttttatatactgcatttt 676
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617  cagaacaacaatcaattccacaaggtcaaatctttttcttccttttatatactgcatttt 676

                                                                        
Query: 677  taattatatcaattatctattcagtagctttaaagaaaaaaggattagaaggtaaagcaa 736
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677  taattatatcaattatctattcagtagctttaaagaaaaaaggattagaaggtaaagcaa 736

                                                                        
Query: 737  ttcatttctttattgcaattttattaatatttttaatttcacttgcactttatatttcaa 796
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737  ttcatttctttattgcaattttattaatatttttaatttcacttgcactttatatttcaa 796

                                                                        
Query: 797  attgggcacatatattaaaatatcataaatatgaattaagatatttaaatctttttggta 856
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797  attgggcacatatattaaaatatcataaatatgaattaagatatttaaatctttttggta 856

                                                                        
Query: 857  atatttttgaaattttaggtaatggtttatttgtagcattaattttaatgattggccaag 916
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857  atatttttgaaattttaggtaatggtttatttgtagcattaattttaatgattggccaag 916

                                                                        
Query: 917  gttggactacttcaatttattttggatcattagttaaacaaatgataaatatattagttt 976
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 917  gttggactacttcaatttattttggatcattagttaaacaaatgataaatatattagttt 976

                                                                        
Query: 977  caattgcattgattgttattgggtgggttgcatatgtttattatgtttatcattcaaagg 1036
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 977  caattgcattgattgttattgggtgggttgcatatgtttattatgtttatcattcaaagg 1036

                                                                        
Query: 1037 aacaaaatagttatatttatttcatggatacttgtccaggttactttttattggcattat 1096
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1037 aacaaaatagttatatttatttcatggatacttgtccaggttactttttattggcattat 1096

                                                                        
Query: 1097 atgttgtaatcattggttatttctgttgggcaaattatgtaaatcgtaacaaacaaaatg 1156
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1097 atgttgtaatcattggttatttctgttgggcaaattatgtaaatcgtaacaaacaaaatg 1156

                                                                        
Query: 1157 aatcaattaaaaagaattttattttaatttttacaatcatctttgtattttggttaatta 1216
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1157 aatcaattaaaaagaattttattttaatttttacaatcatctttgtattttggttaatta 1216

                                                                        
Query: 1217 gtcatccattggttgtaatcgttgctcatttcatggatccatgggttaaatataaagtca 1276
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1217 gtcatccattggttgtaatcgttgctcatttcatggatccatgggttaaatataaagtca 1276

                                                                        
Query: 1277 tcgctttattaaatttaacaatcaatgcaatctttttcatcattctcttaataattttcc 1336
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1277 tcgctttattaaatttaacaatcaatgcaatctttttcatcattctcttaataattttcc 1336

                                                                        
Query: 1337 gtccatctcataataatatgattgttaaaattttacaatctgatgataaatcaaatgata 1396
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1337 gtccatctcataataatatgattgttaaaattttacaatctgatgataaatcaaatgata 1396

                                                                  
Query: 1397 tgaaagaaattattgaaaatgaaaaatcatataatggtgcagattaagagattt 1450
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1397 tgaaagaaattattgaaaatgaaaaatcatataatggtgcagattaagagattt 1450


 Score =  133 bits (67), Expect = 7e-31
 Identities = 67/67 (100%)
 Strand = Plus / Plus

                                                                       
Query: 80  tcaataattgtgtgtgtgtatctttatttcgtacataatttcttttaataaataatttaa 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80  tcaataattgtgtgtgtgtatctttatttcgtacataatttcttttaataaataatttaa 139

                  
Query: 140 acaacat 146
           |||||||
Sbjct: 140 acaacat 146


 Score = 75.8 bits (38), Expect = 1e-13
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                 
Query: 167 taataataataataattttaaataataattttttttat 204
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 167 taataataataataattttaaataataattttttttat 204


 Score = 71.9 bits (36), Expect = 2e-12
 Identities = 39/39 (100%)
 Strand = Plus / Plus

                                                 
Query: 1  actgttggcctactggnaattttaaattattgtagttag 39
          |||||||||||||||||||||||||||||||||||||||
Sbjct: 1  actgttggcctactggnaattttaaattattgtagttag 39


 Score = 36.2 bits (18), Expect = 0.11
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 1578 gttttcccaagttttttt 1595
            ||||||||||||||||||
Sbjct: 1578 gttttcccaagttttttt 1595


 Score = 32.2 bits (16), Expect = 1.8
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                            
Query: 979  attgcattgattgtta 994
            ||||||||||||||||
Sbjct: 1307 attgcattgattgtta 1292


 Score = 32.2 bits (16), Expect = 1.8
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                            
Query: 167  taataataataataat 182
            ||||||||||||||||
Sbjct: 1540 taataataataataat 1555


 Score = 32.2 bits (16), Expect = 1.8
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                            
Query: 1292 taacaatcaatgcaat 1307
            ||||||||||||||||
Sbjct: 994  taacaatcaatgcaat 979


 Score = 32.2 bits (16), Expect = 1.8
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                            
Query: 167  taataataataataat 182
            ||||||||||||||||
Sbjct: 1537 taataataataataat 1552


 Score = 32.2 bits (16), Expect = 1.8
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                            
Query: 167  taataataataataat 182
            ||||||||||||||||
Sbjct: 1531 taataataataataat 1546


 Score = 32.2 bits (16), Expect = 1.8
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                            
Query: 167  taataataataataat 182
            ||||||||||||||||
Sbjct: 1528 taataataataataat 1543


 Score = 32.2 bits (16), Expect = 1.8
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                            
Query: 167  taataataataataat 182
            ||||||||||||||||
Sbjct: 1534 taataataataataat 1549


 Score = 32.2 bits (16), Expect = 1.8
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                            
Query: 167  taataataataataat 182
            ||||||||||||||||
Sbjct: 1543 taataataataataat 1558


 Score = 30.2 bits (15), Expect = 7.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                           
Query: 167  taataataataataa 181
            |||||||||||||||
Sbjct: 1546 taataataataataa 1560


 Score = 30.2 bits (15), Expect = 7.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                           
Query: 168  aataataataataat 182
            |||||||||||||||
Sbjct: 1526 aataataataataat 1540


>Contig-U13994-1 (Contig-U13994-1Q) /CSM_Contig/Contig-U13994-1Q.Seq.d
          Length = 1077

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 168 aataataataataattttaaataataat 195
           |||||||||||||||| |||||||||||
Sbjct: 831 aataataataataattataaataataat 858


>Contig-U13028-1 (Contig-U13028-1Q) /CSM_Contig/Contig-U13028-1Q.Seq.d
          Length = 1219

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 167 taataataataataattttaaataata 193
           |||||||||||||||||||||| ||||
Sbjct: 828 taataataataataattttaaaaaata 854


 Score = 34.2 bits (17), Expect = 0.45
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 167 taataataataataatt 183
           |||||||||||||||||
Sbjct: 956 taataataataataatt 972


 Score = 32.2 bits (16), Expect = 1.8
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 167 taataataataataat 182
           ||||||||||||||||
Sbjct: 974 taataataataataat 989


 Score = 32.2 bits (16), Expect = 1.8
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 167 taataataataataat 182
           ||||||||||||||||
Sbjct: 891 taataataataataat 906


 Score = 32.2 bits (16), Expect = 1.8
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 167 taataataataataat 182
           ||||||||||||||||
Sbjct: 888 taataataataataat 903


 Score = 32.2 bits (16), Expect = 1.8
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 167 taataataataataat 182
           ||||||||||||||||
Sbjct: 894 taataataataataat 909


 Score = 32.2 bits (16), Expect = 1.8
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 167 taataataataataat 182
           ||||||||||||||||
Sbjct: 897 taataataataataat 912


 Score = 30.2 bits (15), Expect = 7.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 168 aataataataataat 182
           |||||||||||||||
Sbjct: 886 aataataataataat 900


 Score = 30.2 bits (15), Expect = 7.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 168 aataataataataat 182
           |||||||||||||||
Sbjct: 954 aataataataataat 968


 Score = 30.2 bits (15), Expect = 7.0
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                               
Query: 167  taataataataataatttt 185
            ||||| |||||||||||||
Sbjct: 1035 taatagtaataataatttt 1053


 Score = 30.2 bits (15), Expect = 7.0
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 167 taataataataataa 181
           |||||||||||||||
Sbjct: 977 taataataataataa 991


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 58,455
Number of Sequences: 6905
Number of extensions: 58455
Number of successful extensions: 16107
Number of sequences better than 10.0: 2303
length of query: 1604
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1588
effective length of database: 5,564,391
effective search space: 8836252908
effective search space used: 8836252908
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.23
Homology vs DNA 
Query= Contig-U11267-1 (Contig-U11267-1Q) /CSM_Contig/Contig-U11267-1Q.Seq.d
         (1604 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C92090) Dictyostelium discoideum slug cDNA, clone SSD406.       1084   0.0    1
(C84115) Dictyostelium discoideum slug cDNA, clone SSC809.       1084   0.0    1
(AU051948) Dictyostelium discoideum slug cDNA, clone SSC456.     1078   0.0    1
(BJ376184) Dictyostelium discoideum cDNA clone:ddc21d14, 3' ...   977   0.0    4
(BJ376257) Dictyostelium discoideum cDNA clone:ddc21d20, 3' ...   870   0.0    3
(C91177) Dictyostelium discoideum slug cDNA, clone SSJ775.        959   0.0    1
(AU037097) Dictyostelium discoideum slug cDNA, clone SSB439.      942   0.0    1
(BJ341144) Dictyostelium discoideum cDNA clone:dda5m08, 3' e...   880   0.0    2
(BJ399845) Dictyostelium discoideum cDNA clone:dds7a19, 3' e...   874   0.0    2
(C91125) Dictyostelium discoideum slug cDNA, clone SSJ660.        793   0.0    1
(BJ349742) Dictyostelium discoideum cDNA clone:dda37b17, 3' ...   626   0.0    3
(C84120) Dictyostelium discoideum slug cDNA, clone SSC818.        692   0.0    1
(BJ375381) Dictyostelium discoideum cDNA clone:ddc18c15, 3' ...   557   e-175  3
(AU073847) Dictyostelium discoideum slug cDNA, clone SSI528.      474   e-129  1
(BJ359458) Dictyostelium discoideum cDNA clone:ddc14g20, 5' ...   381   e-101  1
(BJ372895) Dictyostelium discoideum cDNA clone:ddc14g20, 3' ...   254   2e-73  2
(AU037612) Dictyostelium discoideum slug cDNA, clone SSD852.      174   7e-39  1
(BJ331905) Dictyostelium discoideum cDNA clone:dda37b17, 5' ...   131   5e-28  2
(AU074867) Dictyostelium discoideum slug cDNA, clone SSM283.      131   9e-26  1
(BJ390285) Dictyostelium discoideum cDNA clone:dds21i24, 5' ...   131   9e-26  1
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124...    38   9e-06  15
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    36   5e-05  19
(AC004153) Plasmodium falciparum chromosome 12 clone 3D7, **...    34   3e-04  12
(AE014840) Plasmodium falciparum 3D7 chromosome 11 section 5...    40   0.002  14
(AC006278) Plasmodium falciparum chromosome 12 clone 3D7, **...    34   0.005  13
(AE014822) Plasmodium falciparum 3D7 chromosome 14 section 7...    36   0.005  15
(CR382399) Plasmodium falciparum chromosome 6, complete sequ...    34   0.009  19
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    36   0.009  12
(AE014832) Plasmodium falciparum 3D7 chromosome 10 section 4...    34   0.013  16
(CD524349) ku98h11.y1 Strongyloides ratti PA female naive pA...    54   0.017  1
(AE014825) Plasmodium falciparum 3D7 chromosome 14 section 1...    36   0.025  16
(AC005504) Plasmodium falciparum chromosome 12, *** SEQUENCI...    34   0.036  10
(AL844509) Plasmodium falciparum chromosome 13.                    40   0.038  14
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    40   0.043  11
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    36   0.064  14
(AL929354) Plasmodium falciparum strain 3D7, chromosome 5, s...    34   0.076  17
(BH979397) odf95f02.g1 B.oleracea002 Brassica oleracea genom...    44   0.091  2
(AE014842) Plasmodium falciparum 3D7 chromosome 11 section 7...    32   0.10   15
(AE014824) Plasmodium falciparum 3D7 chromosome 14 section 9...    34   0.11   12
(EK355406) 1095468502478 Global-Ocean-Sampling_GS-31-01-01-1...    38   0.12   2
(AE014852) Plasmodium falciparum 3D7 chromosome 12, section ...    32   0.13   15
(AC115607) Dictyostelium discoideum chromosome 2 map 4559693...    36   0.16   9
(CN801370) DI8P03673 24h-POST INFECTION Caenorhabditis elega...    38   0.16   3
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    36   0.17   16
(CU207247) PTB-124C04, complete sequence.                          38   0.18   10
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255...    38   0.19   17
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    42   0.20   14
(AM429506) Vitis vinifera contig VV78X059219.5, whole genome...    34   0.20   5
(BH449241) BOGIA32TR BOGI Brassica oleracea genomic clone BO...    36   0.21   3
(CU582844) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   0.22   8
(AL035475) Plasmodium falciparum MAL4P2.                           34   0.24   16
(AC166918) Bos taurus clone CH240-127I7, WORKING DRAFT SEQUE...    34   0.24   10
(Z98551) Plasmodium falciparum MAL3P6.                             34   0.25   11
(CU571154) M.truncatula DNA sequence from clone MTH2-59O16 o...    50   0.26   1
(CQ583526) Sequence 11284 from Patent WO0171042.                   50   0.26   1
(AE013599) Drosophila melanogaster chromosome 2R, complete s...    50   0.26   1
(AC005639) Drosophila melanogaster, chromosome 2R, region 59...    50   0.26   1
(AC147715) Medicago truncatula clone mth2-76b9, WORKING DRAF...    50   0.26   1
(AC020507) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    50   0.26   1
(AL929351) Plasmodium falciparum strain 3D7, chromosome 5, s...    38   0.28   16
(AC004157) Plasmodium falciparum chromosome 12 clone 3D7, **...    40   0.30   10
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    36   0.30   14
(AE014844) Plasmodium falciparum 3D7 chromosome 12, section ...    34   0.30   14
(AL034559) Plasmodium falciparum MAL3P7.                           44   0.32   12
(CP000939) Clostridium botulinum B1 str. Okra, complete genome.    42   0.40   17
(AL844506) Plasmodium falciparum chromosome  7.                    38   0.41   16
(CP000361) Arcobacter butzleri RM4018, complete genome.            36   0.44   21
(AC205640) Ixodes scapularis chromosome unknown clone ISG1-2...    48   0.54   4
(AL732429) Mouse DNA sequence from clone RP23-89N11 on chrom...    36   0.57   2
(CP000013) Borrelia garinii PBi, complete genome.                  36   0.58   20
(CP001056) Clostridium botulinum B str. Eklund 17B, complete...    36   0.58   19
(CR382401) Plasmodium falciparum chromosome 6, complete sequ...    48   0.60   14
(AB361007) Culicoides cylindratus mitochondrial DNA, large s...    44   0.61   4
(EU004203) Saccharomyces cerevisiae YJM789 mitochondrion, co...    34   0.64   10
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp...    34   0.81   19
(AE017263) Mesoplasma florum L1 complete genome.                   32   0.83   22
(AC186463) Callicebus moloch clone LB5-172N23, WORKING DRAFT...    36   0.92   6
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098...    32   0.94   10
(X07127) Kluyveromyces lactis killer plasmid k1  DNA.              44   0.95   2
(X01095) Yeast DNA killer plasmid pGKL1.                           44   0.95   2
(X00762) Kluyveromyces lactis (killer strain) plasmid k1 seq...    44   0.95   2
(BD392458) Calcineurin activator.                                  44   0.95   2
(M11815) Plasmid pGKL1 from killer yeast (K.lactis), complete.     44   0.95   2
(AC215352) Solanum lycopersicum chromosome 2 clone C02HBa000...    38   0.97   7
(AL844507) Plasmodium falciparum chromosome 8.                     36   0.98   15
(EU556754) Tetranychus urticae strain BR-VL mitochondrion, c...    32   0.98   6
(EU345430) Tetranychus urticae mitochondrion, complete genome.     32   0.98   6
(AL929299) Zebrafish DNA sequence from clone BUSM1-SL6.            48   1.0    1
(CS428798) Sequence 1705 from Patent WO2006100066.                 48   1.0    1
(AL359473) Human DNA sequence from clone RP11-69J16 on chrom...    48   1.0    1
(AB040944) Homo sapiens mRNA for KIAA1511 protein, partial cds.    48   1.0    1
(AC127712) Rattus norvegicus clone CH230-63D7, WORKING DRAFT...    48   1.0    1
(CU928727) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   1.0    1
(CT961044) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   1.0    1
(AC231094) Bos taurus clone CH240-491K9, WORKING DRAFT SEQUE...    48   1.0    1
(AC185747) Bos taurus clone RP42-258N18, WORKING DRAFT SEQUE...    48   1.0    1
(BC013836) Homo sapiens zinc finger, SWIM-type containing 5,...    48   1.0    1
(FH301883) CHO_OF4244xn04r2.ab1 CHO_OF4 Nicotiana tabacum ge...    48   1.0    1
(FH301790) CHO_OF4244xn04f2.ab1 CHO_OF4 Nicotiana tabacum ge...    48   1.0    1
(ER482441) 1093015272531 Global-Ocean-Sampling_GS-35-01-01-1...    48   1.0    1

>(C92090) Dictyostelium discoideum slug cDNA, clone SSD406.
          Length = 636

 Score = 1084 bits (547), Expect = 0.0
 Identities = 547/547 (100%)
 Strand = Plus / Plus


Query: 904  atgattggccaaggttggactacttcaatttattttggatcattagttaaacaaatgata 963
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76   atgattggccaaggttggactacttcaatttattttggatcattagttaaacaaatgata 135


Query: 964  aatatattagtttcaattgcattgattgttattgggtgggttgcatatgtttattatgtt 1023
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136  aatatattagtttcaattgcattgattgttattgggtgggttgcatatgtttattatgtt 195


Query: 1024 tatcattcaaaggaacaaaatagttatatttatttcatggatacttgtccaggttacttt 1083
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196  tatcattcaaaggaacaaaatagttatatttatttcatggatacttgtccaggttacttt 255


Query: 1084 ttattggcattatatgttgtaatcattggttatttctgttgggcaaattatgtaaatcgt 1143
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256  ttattggcattatatgttgtaatcattggttatttctgttgggcaaattatgtaaatcgt 315


Query: 1144 aacaaacaaaatgaatcaattaaaaagaattttattttaatttttacaatcatctttgta 1203
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316  aacaaacaaaatgaatcaattaaaaagaattttattttaatttttacaatcatctttgta 375


Query: 1204 ttttggttaattagtcatccattggttgtaatcgttgctcatttcatggatccatgggtt 1263
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376  ttttggttaattagtcatccattggttgtaatcgttgctcatttcatggatccatgggtt 435


Query: 1264 aaatataaagtcatcgctttattaaatttaacaatcaatgcaatctttttcatcattctc 1323
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436  aaatataaagtcatcgctttattaaatttaacaatcaatgcaatctttttcatcattctc 495


Query: 1324 ttaataattttccgtccatctcataataatatgattgttaaaattttacaatctgatgat 1383
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496  ttaataattttccgtccatctcataataatatgattgttaaaattttacaatctgatgat 555


Query: 1384 aaatcaaatgatatgaaagaaattattgaaaatgaaaaatcatataatggtgcagattaa 1443
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556  aaatcaaatgatatgaaagaaattattgaaaatgaaaaatcatataatggtgcagattaa 615


Query: 1444 gagattt 1450
            |||||||
Sbjct: 616  gagattt 622

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,788,644,562
Number of extensions: 153606301
Number of successful extensions: 12247749
Number of sequences better than 10.0: 796
Length of query: 1604
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1580
Effective length of database: 97,308,875,965
Effective search space: 153748024024700
Effective search space used: 153748024024700
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.29
Homology vs Protein 
Query= Contig-U11267-1 (Contig-U11267-1Q) /CSM_Contig/Contig-U11267-1Q.Seq.d
         (1604 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001332_137(CP001332|pid:none) Micromonas sp. RCC299 chromosome...    65   5e-09
AC117070_6(AC117070|pid:none) Dictyostelium discoideum chromosom...    65   9e-09
(Q8C4U2) RecName: Full=Transmembrane protein 145;  &AK081054_1(A...    55   6e-06
BT031347_1(BT031347|pid:none) Drosophila melanogaster RE71821 fu...    49   4e-04
(Q86V85) RecName: Full=Integral membrane protein GPR180; AltName...    44   0.017
AK126794_1(AK126794|pid:none) Homo sapiens cDNA FLJ44844 fis, cl...    41   0.11
AB041545_1(AB041545|pid:none) Mus musculus brain cDNA, clone MNC...    39   0.54
AC096673_14(AC096673|pid:none) Trypanosoma brucei chromosome 3 c...    39   0.54
CP000084_978(CP000084|pid:none) Candidatus Pelagibacter ubique H...    39   0.54
AE017355_2501(AE017355|pid:none) Bacillus thuringiensis serovar ...    38   0.92
BC083689_1(BC083689|pid:none) Rattus norvegicus G protein-couple...    38   0.92
CP000939_240(CP000939|pid:none) Clostridium botulinum B1 str. Ok...    37   1.6
CP001581_234(CP001581|pid:none) Clostridium botulinum A2 str. Ky...    37   1.6
CP000033_1747(CP000033|pid:none) Lactobacillus acidophilus NCFM,...    37   2.0
CP000612_609(CP000612|pid:none) Desulfotomaculum reducens MI-1, ...    37   2.0
T24471(T24471) hypothetical protein T04F8.2 - Caenorhabditis ele...    37   2.7
F89651(F89651)protein T04F8.2 [imported] - Caenorhabditis elegans      37   2.7
CP000453_998(CP000453|pid:none) Alkalilimnicola ehrlichii MLHE-1...    36   3.5
CP000083_68(CP000083|pid:none) Colwellia psychrerythraea 34H, co...    36   4.5
CP001037_3271(CP001037|pid:none) Nostoc punctiforme PCC 73102, c...    36   4.5
AP009049_2453(AP009049|pid:none) Clostridium kluyveri NBRC 12016...    36   4.5
AF305709_1(AF305709|pid:none) Mus musculus putative chemokine re...    35   5.9
BX936398_2721(BX936398|pid:none) Yersinia pseudotuberculosis IP3...    35   5.9
AC0365(AC0365) probable permease YPO3002 [imported] - Yersinia p...    35   5.9
CP000937_1120(CP000937|pid:none) Francisella philomiragia subsp....    35   5.9
CP001048_2781(CP001048|pid:none) Yersinia pseudotuberculosis PB1...    35   5.9
BC096491_1(BC096491|pid:none) Mus musculus chemokine (C-X-C moti...    35   7.8
AE017261_364(AE017261|pid:none) Picrophilus torridus DSM 9790, c...    35   7.8
(Q9EQ16) RecName: Full=C-X-C chemokine receptor type 6;         ...    35   7.8
AE000782_1809(AE000782|pid:none) Archaeoglobus fulgidus DSM 4304...    35   7.8
AM999887_716(AM999887|pid:none) Wolbachia endosymbiont of Culex ...    35   7.8

>CP001332_137(CP001332|pid:none) Micromonas sp. RCC299 chromosome 14,
            complete sequence.
          Length = 283

 Score = 65.5 bits (158), Expect = 5e-09
 Identities = 57/247 (23%), Positives = 102/247 (41%), Gaps = 4/247 (1%)
 Frame = +1

Query: 550  PFVSTYTFEVQNSGDSFDSQLSAEQQSIPQGQIFFFLLYTAFLIISIIYSVALKKKGLEG 729
            P   +Y F+  N     D   SA++  + +  I F  L T  L+I     V   +K L+
Sbjct: 8    PIDISYNFQFTNGYKFSDKHFSADEIGVMETMITFVCLQT--LLIGYFLYV---RKLLKS 62

Query: 730  KXXXXXXXXXXXXXXXXXXYISNWA--HILKYHKYELRYLNLF--GNIFEILGNGLFVAL 897
                               +   W   H + +    L ++     G +F+     +F+ L
Sbjct: 63   IHKNHHTVKMLGASIFLAWFAHGWILIHYIWFAYDGLGWVGFIYVGRLFQGASETVFLLL 122

Query: 898  ILMIGQGWTTSIYFGSLVKQMINILVSIALIVIGWVAYVYYVYHSKEQNSYIYFMDTCPG 1077
            ++++G+GWT      S  +  + I V   +  I W+A   Y Y   ++ S ++F  +  G
Sbjct: 123  LILVGKGWTICCRKIS-ARGRVKIAVFGTVYSITWLAIPTYYYLYGDRASTLHFYQSAYG 181

Query: 1078 YFLLALYVVIIGYFCWANYVNRNKQNESIKKNFILIFTIIFVFWLISHPLVVIVAHFMDP 1257
            Y LL L +  +G+F  A  +   K N   K +F   F +    W +  P++ I A  + P
Sbjct: 182  YILLTLRLFGLGWFLNACTITVRKYN--AKVHFYHKFMMAMALWFLGLPIMAIAASAITP 239

Query: 1258 WVKYKVI 1278
            W ++ +I
Sbjct: 240  WTRFLII 246

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,879,605,049
Number of extensions: 33884063
Number of successful extensions: 111553
Number of sequences better than 10.0: 31
Number of HSP's gapped: 111430
Number of HSP's successfully gapped: 31
Length of query: 534
Length of database: 1,040,966,779
Length adjustment: 133
Effective length of query: 401
Effective length of database: 614,796,874
Effective search space: 246533546474
Effective search space used: 246533546474
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.40  gvh: 0.28  alm: 0.13  top: 0.97  tms: 0.47  mit: 0.39  mip: 0.09
 nuc: 0.56  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 56.0 %: plasma membrane
	 12.0 %: vacuolar
	 12.0 %: nuclear
	 12.0 %: endoplasmic reticulum
	  4.0 %: Golgi
	  4.0 %: mitochondrial

>> prediction for Contig-U11267-1 is pla
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 1
AF (FL, S) 1
SL (DIR, L) 0
SS (DIR, S) 10
SH (FL, L) 0
SF (FL, S) 2
CH (FL, L) 0
CF (FL, S) 4
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0