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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U11260-1
Contig ID Contig-U11260-1
Contig update 2002.12.18
Contig sequence 
>Contig-U11260-1 (Contig-U11260-1Q) /CSM_Contig/Contig-U11260-1Q.Seq.d
AAATAAAAAACAATAAAAAAATATAATAATAACAATAATATAAATAATAA
CAAATGATTTAAAATGTTGTCTGCTTTTAAAAAAAATCTATTAAAACCAT
CTTCACAAACATATATTAAATATAATATCAACAATATTAGTTTAATAAAA
AAAAAAATCACTCCGAAAATTAATAAAGATAAAAATGAAAATTATAATAA
TAATAATAATAATAATGTTTTATCATGTACAACTATAAATTCTTCATTAA
CTACTTCTTTAATAAATAATAATAGTAATAATAATAATAATAATAATAAT
AATTGTTTTATTAATGGAGGACAAANACATTTCGGATCATGGGGTTTTAN
ATTTTTAATGGGTTTTTCAATTGTTGGTATAATGTATTTTGCAAGAANAT
GGCAACCAAGACAAATTCAAAGGATTATACAAATGTTTAANAATGGATCA
NATGATATGGATATTTTATCATTGACATCAAAAGATCAAACATTTCATTC
AAACATTTCATTCAATCGTGAAAAANAAGTTAATTATTTAAATTCATTTC
TATCATCACCACCATTAGGACCAATTGTAATAGTTGGGCCTGAAGGTTGT
GGTAAATCAC----------CAATAGCAAGAGATGGTAGTGGTAGTATTA
GTGGTAACCAAAAACAAATTAAAAAGTCCCAAAAAAAAAGAAGATCAACA
NCAATCACAAAAACAACAAAAACANCANCAACAACAACAACAACAACTAC
AACAACAACAACAACAACAACAACCAATTGATTTAATACCATCACCATCA
ATTGAATTGGTTAAAGTTGAAGGTGACGATTGCTTTGTTGATTTAAATAA
TAATCATATCGTTGATAATTCAGTACCAATTGTTGATGAACGTACAGTTG
TTGATGATTCAGATTTAGGTGATTTAGTTGTAGCGGCTACTCAAATTCCA
AATAGTACATTCTATAATTTGGTTTGTTTTTCATCACCACGTATTCTCTA
TGCAGTTCAATTATTAATCATGGATAATCGTTTAAAACTTCAACGTGATG
CAATTGAAAAGTACTTTAAAAAGAAAGATTTAAAAGATGATAAAAAGGAA
TTAGAAGAAGAGAAATCAATTAAACAAATTGAATTTGAAAAAATCACAAC
TAGATTAGATTCATTAGTTGCAAACTCAAAAGAATGGGTAAAATTCATTG
GTGATGATGATTTTGTTAAAAGAACAGATTATTTAATTAAAAAAGAAACT
GAATTATTAAATCAAATTGAACAATTAAATGAAAAAATCTTTAAACTAGA
AGTGAATTAGATAATTTATAAATAATAAANATTAAAATAAATAA
Gap gap included
Contig length 1334
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 3347372
End point 3348711
Strand (PLUS/MINUS) PLUS
Number of clones 7
Number of EST 10
Link to clone list U11260
List of clone(s) 

est1=VHH624F,1,399
est2=AHD207F,5,610
est3=AHQ451F,12,610
est4=VHH572F,74,174
est5=VHK858Z,611,1254
est6=AHD207Z,614,1337
est7=VHH624Z,728,1340
est8=AHA795Z,729,1252
est9=VHD605Z,734,1251
est10=AHQ451Z,737,1338
Translated Amino Acid sequence 
k*ktikkynnnnninnnk*FKMLSAFKKNLLKPSSQTYIKYNINNISLIKKKITPKINKD
KNENYNNNNNNNVLSCTTINSSLTTSLINNNSNNNNNNNNNCFINGGQXHFGSWGFXFLM
GFSIVGIMYFARXWQPRQIQRIIQMFXNGSXDMDILSLTSKDQTFHSNISFNREKXVNYL
NSFLSSPPLGPIVIVGPEGCGKS---

---IARDGSGSISGNQKQIKKSQKKRRSTXITKTTKTXXTTTTTTTTTTTTTTTN*fnti
tin*ig*s*r*rllc*fk**syr**fstnc**tysc**frfr*fscsgysnsk*yil*fg
lffittyslcssiinhg*sfktst*cn*kvl*kerfkr**kgirrrein*tn*i*knhn*
irfiscklkrmgkihw***fc*knrlfn*krn*iiksn*tik*knl*trseldnl*iixi
kin
Translated Amino Acid sequence (All Frames) 
Frame A:
k*ktikkynnnnninnnk*FKMLSAFKKNLLKPSSQTYIKYNINNISLIKKKITPKINKD
KNENYNNNNNNNVLSCTTINSSLTTSLINNNSNNNNNNNNNCFINGGQXHFGSWGFXFLM
GFSIVGIMYFARXWQPRQIQRIIQMFXNGSXDMDILSLTSKDQTFHSNISFNREKXVNYL
NSFLSSPPLGPIVIVGPEGCGKS---

---q*qemvvvvlvvtknklkspkkkedqxqsqkqqkxxqqqqqqlqqqqqqqqpidlip
spsielvkvegddcfvdlnnnhivdnsvpivdertvvddsdlgdlvvaatqipnstfynl
vcfssprilyavqllimdnrlklqrdaiekyfkkkdlkddkkeleeeksikqiefekitt
rldslvanskewvkfigdddfvkrtdylikketellnqieqlnekifklevn*iiyk**x
lk*i

Frame B:
nkkq*kniiitii*iitndlkcclllkkiy*nhlhkhilniistilv**kkkslrkliki
kmkiiiiiiiimfyhvql*ilh*lll**iiiviiiiiiiiivllmedkxisdhgvlxf*w
vfqllv*cilqexgnqdkfkglykclxmdxmiwifyh*hqkikhfiqtfhsivkxklii*
ihfyhhhh*dql**lglkvvvnh---

---nskrw*w*y*w*pktn*kvpkkkkinxnhknnknxxnnnnnnynnnnnnnnqli*yh
hhqlnwlklkvtialli*iiiisliiqyqllmnvqllmiqi*vi*l*rllkfqivhsiiw
fvfhhhvfsmqfny*swiiv*nfnvmqlkstlkrki*kmikrn*kkrnqlnklnlkksql
d*ih*lqtqkng*nslvmmillkeqii*lkkklny*iklnn*mkksln*k*ir*finnkx
*nk*

Frame C:
iknnkki***q*yk**qmi*nvvcf*kksiktiftniy*i*yqqy*fnkkknhsen**r*
k*kl*******cfimynykffinyffnk************lfy*wrtxtfrimgfxifng
ffncwynvfckxmatktnskdytnv*xwix*ygyfiidikrsnisfkhfiqs*kxs*lfk
fisiittirtncnswa*rlw*i---

---IARDGSGSISGNQKQIKKSQKKRRSTXITKTTKTXXTTTTTTTTTTTTTTTN*fnti
tin*ig*s*r*rllc*fk**syr**fstnc**tysc**frfr*fscsgysnsk*yil*fg
lffittyslcssiinhg*sfktst*cn*kvl*kerfkr**kgirrrein*tn*i*knhn*
irfiscklkrmgkihw***fc*knrlfn*krn*iiksn*tik*knl*trseldnl*iixi
kin
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U11260-1 (Contig-U11260-1Q)
/CSM_Contig/Contig-U11260-1Q.Seq.d
         (1344 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U11260-1 (Contig-U11260-1Q) /CSM_Contig/Conti...   609  e-174
Contig-U13594-1 (Contig-U13594-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U12289-1 (Contig-U12289-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U09287-1 (Contig-U09287-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U11509-1 (Contig-U11509-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U14566-1 (Contig-U14566-1Q) /CSM_Contig/Conti...    38  0.024
Contig-U13885-1 (Contig-U13885-1Q) /CSM_Contig/Conti...    38  0.024
Contig-U14525-1 (Contig-U14525-1Q) /CSM_Contig/Conti...    36  0.095
Contig-U14145-1 (Contig-U14145-1Q) /CSM_Contig/Conti...    36  0.095
Contig-U13409-1 (Contig-U13409-1Q) /CSM_Contig/Conti...    36  0.095

>Contig-U11260-1 (Contig-U11260-1Q) /CSM_Contig/Contig-U11260-1Q.Seq.d
          Length = 1344

 Score =  609 bits (307), Expect = e-174
 Identities = 355/355 (100%)
 Strand = Plus / Plus

                                                                       
Query: 304 tgttttattaatggaggacaaanacatttcggatcatggggttttanatttttaatgggt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tgttttattaatggaggacaaanacatttcggatcatggggttttanatttttaatgggt 363

                                                                       
Query: 364 ttttcaattgttggtataatgtattttgcaagaanatggcaaccaagacaaattcaaagg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ttttcaattgttggtataatgtattttgcaagaanatggcaaccaagacaaattcaaagg 423

                                                                       
Query: 424 attatacaaatgtttaanaatggatcanatgatatggatattttatcattgacatcaaaa 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 attatacaaatgtttaanaatggatcanatgatatggatattttatcattgacatcaaaa 483

                                                                       
Query: 484 gatcaaacatttcattcaaacatttcattcaatcgtgaaaaanaagttaattatttaaat 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gatcaaacatttcattcaaacatttcattcaatcgtgaaaaanaagttaattatttaaat 543

                                                                       
Query: 544 tcatttctatcatcaccaccattaggaccaattgtaatagttgggcctgaaggttgtggt 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tcatttctatcatcaccaccattaggaccaattgtaatagttgggcctgaaggttgtggt 603

                                                                  
Query: 604 aaatcacnnnnnnnnnncaatagcaagagatggtagtggtagtattagtggtaac 658
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 aaatcacnnnnnnnnnncaatagcaagagatggtagtggtagtattagtggtaac 658


 Score =  573 bits (289), Expect = e-163
 Identities = 289/289 (100%)
 Strand = Plus / Plus

                                                                        
Query: 775  caattgatttaataccatcaccatcaattgaattggttaaagttgaaggtgacgattgct 834
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775  caattgatttaataccatcaccatcaattgaattggttaaagttgaaggtgacgattgct 834

                                                                        
Query: 835  ttgttgatttaaataataatcatatcgttgataattcagtaccaattgttgatgaacgta 894
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835  ttgttgatttaaataataatcatatcgttgataattcagtaccaattgttgatgaacgta 894

                                                                        
Query: 895  cagttgttgatgattcagatttaggtgatttagttgtagcggctactcaaattccaaata 954
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895  cagttgttgatgattcagatttaggtgatttagttgtagcggctactcaaattccaaata 954

                                                                        
Query: 955  gtacattctataatttggtttgtttttcatcaccacgtattctctatgcagttcaattat 1014
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 955  gtacattctataatttggtttgtttttcatcaccacgtattctctatgcagttcaattat 1014

                                                             
Query: 1015 taatcatggataatcgtttaaaacttcaacgtgatgcaattgaaaagta 1063
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1015 taatcatggataatcgtttaaaacttcaacgtgatgcaattgaaaagta 1063


 Score =  367 bits (185), Expect = e-101
 Identities = 185/185 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1125 caaattgaatttgaaaaaatcacaactagattagattcattagttgcaaactcaaaagaa 1184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1125 caaattgaatttgaaaaaatcacaactagattagattcattagttgcaaactcaaaagaa 1184

                                                                        
Query: 1185 tgggtaaaattcattggtgatgatgattttgttaaaagaacagattatttaattaaaaaa 1244
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1185 tgggtaaaattcattggtgatgatgattttgttaaaagaacagattatttaattaaaaaa 1244

                                                                        
Query: 1245 gaaactgaattattaaatcaaattgaacaattaaatgaaaaaatctttaaactagaagtg 1304
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1245 gaaactgaattattaaatcaaattgaacaattaaatgaaaaaatctttaaactagaagtg 1304

                 
Query: 1305 aatta 1309
            |||||
Sbjct: 1305 aatta 1309


 Score =  133 bits (67), Expect = 5e-31
 Identities = 83/91 (91%)
 Strand = Plus / Plus

                                                                       
Query: 56  gatttaaaatgttgtctgcttttnnnnnnnntctattaaaaccatcttcacaaacatata 115
           |||||||||||||||||||||||        |||||||||||||||||||||||||||||
Sbjct: 56  gatttaaaatgttgtctgcttttaaaaaaaatctattaaaaccatcttcacaaacatata 115

                                          
Query: 116 ttaaatataatatcaacaatattagtttaat 146
           |||||||||||||||||||||||||||||||
Sbjct: 116 ttaaatataatatcaacaatattagtttaat 146


 Score = 85.7 bits (43), Expect = 1e-16
 Identities = 43/43 (100%)
 Strand = Plus / Plus

                                                      
Query: 217 gttttatcatgtacaactataaattcttcattaactacttctt 259
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 gttttatcatgtacaactataaattcttcattaactacttctt 259


>Contig-U13594-1 (Contig-U13594-1Q) /CSM_Contig/Contig-U13594-1Q.Seq.d
          Length = 570

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 1240 aaaaagaaactgaattattaaatcaaa 1266
            |||||||||||| ||||||||||||||
Sbjct: 409  aaaaagaaactgcattattaaatcaaa 435


>Contig-U12289-1 (Contig-U12289-1Q) /CSM_Contig/Contig-U12289-1Q.Seq.d
          Length = 2243

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 634 tggtagtggtagtattagtggt 655
           ||||||||||||||||||||||
Sbjct: 378 tggtagtggtagtattagtggt 399


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 21,830
Number of Sequences: 6905
Number of extensions: 21830
Number of successful extensions: 3031
Number of sequences better than 10.0: 374
length of query: 1344
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1328
effective length of database: 5,564,391
effective search space: 7389511248
effective search space used: 7389511248
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.23
Homology vs DNA 
Query= Contig-U11260-1 (Contig-U11260-1Q) /CSM_Contig/Contig-U11260-1Q.Seq.d
         (1344 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ332087) Dictyostelium discoideum cDNA clone:dda37m02, 5' ...   573   0.0    4
(BJ443305) Dictyostelium discoideum cDNA clone:ddv52d16, 3' ...   557   0.0    3
(BJ349639) Dictyostelium discoideum cDNA clone:dda37m02, 3' ...   557   0.0    3
(BJ338935) Dictyostelium discoideum cDNA clone:dda63f14, 5' ...   555   0.0    4
(BJ329177) Dictyostelium discoideum cDNA clone:dda24g04, 5' ...   531   0.0    4
(BJ438661) Dictyostelium discoideum cDNA clone:ddv38i02, 3' ...   557   0.0    2
(BJ348344) Dictyostelium discoideum cDNA clone:dda32n23, 3' ...   557   0.0    2
(BJ357436) Dictyostelium discoideum cDNA clone:dda63f14, 3' ...   557   0.0    2
(BJ441270) Dictyostelium discoideum cDNA clone:ddv46o06, 3' ...   557   0.0    2
(BJ422523) Dictyostelium discoideum cDNA clone:ddv46o06, 5' ...   168   3e-83  4
(BJ422679) Dictyostelium discoideum cDNA clone:ddv46o17, 5' ...   119   3e-22  1
(BJ346484) Dictyostelium discoideum cDNA clone:dda24g04, 3' ...    76   4e-09  1
(DE553058) Bombyx mori genomic DNA, Fosmid clone:GBMFno189_m...    52   0.056  1
(AC105495) Rattus norvegicus clone CH230-216J16, WORKING DRA...    38   0.12   2
(AC103040) Rattus norvegicus clone CH230-222O5, WORKING DRAF...    38   0.13   2
(AC165868) Bos taurus clone CH240-171O10, *** SEQUENCING IN ...    50   0.22   1
(AC175917) Strongylocentrotus purpuratus clone R3-12M2, WORK...    34   0.48   2
(AC178073) Strongylocentrotus purpuratus clone R3-3059I07, W...    34   0.48   2
(ER616128) 1093017254632 Global-Ocean-Sampling_GS-36-01-01-2...    48   0.87   1
(EK080835) 1092961104027 Global-Ocean-Sampling_GS-31-01-01-1...    48   0.87   1
(EJ825190) 1093017556851 Global-Ocean-Sampling_GS-30-02-01-1...    48   0.87   1
(EJ813897) 1093017504819 Global-Ocean-Sampling_GS-30-02-01-1...    48   0.87   1
(EJ501060) 1095403634110 Global-Ocean-Sampling_GS-28-01-01-1...    48   0.87   1
(EJ147643) 1092343728800 Global-Ocean-Sampling_GS-27-01-01-1...    48   0.87   1
(EB729770) AGENCOURT_77727062 NICHD_XGC_skin_m Xenopus laevi...    48   0.87   1
(BJ442445) Dictyostelium discoideum cDNA clone:ddv49k24, 3' ...    36   1.6    3
(AC175921) Strongylocentrotus purpuratus clone R3-12M1, WORK...    44   1.7    2
(CT025710) Mouse DNA sequence from clone RP23-261P14 on chro...    46   3.4    1
(BD136648) Insecticidal toxin from Photorhabdus.                   46   3.4    1
(AR166758) Sequence 11 from patent US 6281413.                     46   3.4    1
(AC132774) Rattus norvegicus clone CH230-364B22, WORKING DRA...    46   3.4    1
(ET692964) CHO_OF842xf23r1.ab1 CHO_OF Nicotiana tabacum geno...    46   3.4    1
(FE241848) CAPG6884.fwd CAPG Naegleria gruberi amoeba stage ...    44   3.7    2
(AC202224) Acyrthosiphon pisum  BAC VMRC38-10-A6 (Benaroya R...    42   5.9    4
(AC132187) Pan troglodytes clone RP43-47I22, WORKING DRAFT S...    34   6.3    2
(AC040893) Homo sapiens chromosome 6 clone RP11-722N5 map 6,...    34   6.3    2
(AL355506) Human DNA sequence from clone RP3-366M24 on chrom...    34   6.7    2
(AL603885) Human DNA sequence from clone RP11-722N5 on chrom...    34   6.8    2
(AL591071) Human DNA sequence from clone RP11-4J16 on chromo...    34   7.4    2
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    42   9.6    7

>(BJ332087) Dictyostelium discoideum cDNA clone:dda37m02, 5' end,
           single read.
          Length = 606

 Score =  573 bits (289), Expect(4) = 0.0
 Identities = 307/307 (100%)
 Strand = Plus / Plus


Query: 304 tgttttattaatggaggacaaanacatttcggatcatggggttttanatttttaatgggt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tgttttattaatggaggacaaanacatttcggatcatggggttttanatttttaatgggt 359


Query: 364 ttttcaattgttggtataatgtattttgcaagaanatggcaaccaagacaaattcaaagg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ttttcaattgttggtataatgtattttgcaagaanatggcaaccaagacaaattcaaagg 419


Query: 424 attatacaaatgtttaanaatggatcanatgatatggatattttatcattgacatcaaaa 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 attatacaaatgtttaanaatggatcanatgatatggatattttatcattgacatcaaaa 479


Query: 484 gatcaaacatttcattcaaacatttcattcaatcgtgaaaaanaagttaattatttaaat 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gatcaaacatttcattcaaacatttcattcaatcgtgaaaaanaagttaattatttaaat 539


Query: 544 tcatttctatcatcaccaccattaggaccaattgtaatagttgggcctgaaggttgtggt 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 tcatttctatcatcaccaccattaggaccaattgtaatagttgggcctgaaggttgtggt 599


Query: 604 aaatcac 610
           |||||||
Sbjct: 600 aaatcac 606

 Score =  119 bits (60), Expect(4) = 0.0
 Identities = 60/60 (100%)
 Strand = Plus / Plus


Query: 87  tctattaaaaccatcttcacaaacatatattaaatataatatcaacaatattagtttaat 146
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83  tctattaaaaccatcttcacaaacatatattaaatataatatcaacaatattagtttaat 142

 Score = 85.7 bits (43), Expect(4) = 0.0
 Identities = 43/43 (100%)
 Strand = Plus / Plus


Query: 217 gttttatcatgtacaactataaattcttcattaactacttctt 259
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 gttttatcatgtacaactataaattcttcattaactacttctt 255

 Score = 26.3 bits (13), Expect(4) = 0.0
 Identities = 13/13 (100%)
 Strand = Plus / Plus


Query: 66 gttgtctgctttt 78
          |||||||||||||
Sbjct: 62 gttgtctgctttt 74

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 916,891,552
Number of extensions: 56243806
Number of successful extensions: 4657349
Number of sequences better than 10.0: 40
Length of query: 1344
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1320
Effective length of database: 97,308,875,965
Effective search space: 128447716273800
Effective search space used: 128447716273800
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.29
Homology vs Protein 
Query= Contig-U11260-1 (Contig-U11260-1Q) /CSM_Contig/Contig-U11260-1Q.Seq.d
         (1344 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000312_1285(CP000312|pid:none) Clostridium perfringens SM101, ...    35   8.0
AK083433_1(AK083433|pid:none) Mus musculus 9 days embryo whole b...    35   8.0
CT010499_2(CT010499|pid:none) Mouse DNA sequence from clone RP23...    35   8.0
AY452065_1(AY452065|pid:none) Mus musculus cytoplasmic dynein he...    35   8.0
BC172914_1(BC172914|pid:none) Synthetic construct Homo sapiens c...    35   8.0
AB290167_1(AB290167|pid:none) Homo sapiens mRNA for DYNC2H1/KIAA...    35   8.0

>CP000312_1285(CP000312|pid:none) Clostridium perfringens SM101,
            complete genome.
          Length = 787

 Score = 34.7 bits (78), Expect = 8.0
 Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
 Frame = +3

Query: 1119 IKQIEFEKITTRLDSLVANSKEW---VKFIGDDDFVKRTDYLIKKETEL--LNQIEQLNE 1283
            IK   ++K    ++S++ NSKEW   +K  G+D+ VK     IKKE  L  + +I  + E
Sbjct: 327  IKGFLYDKNIICIESVLRNSKEWKGIIKLNGEDEVVKVNLQKIKKEKNLYYVLRINDITE 386

Query: 1284 KIFKLEVN 1307
            + +K+E N
Sbjct: 387  E-YKMEKN 393

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,143,678,643
Number of extensions: 14079379
Number of successful extensions: 45530
Number of sequences better than 10.0: 6
Number of HSP's gapped: 45523
Number of HSP's successfully gapped: 6
Length of query: 448
Length of database: 1,040,966,779
Length adjustment: 132
Effective length of query: 316
Effective length of database: 618,001,159
Effective search space: 195288366244
Effective search space used: 195288366244
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.64  gvh: 0.26  alm: 0.33  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for Contig-U11260-1 is nuc
VS (DIR, S) 0
VH (FL, L) 4
VF (FL, S) 0
AH (FL, L) 3
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0