Contig-U11246-1
Contig ID Contig-U11246-1
Contig update 2002.12.18
Contig sequence
>Contig-U11246-1 (Contig-U11246-1Q) /CSM_Contig/Contig-U11246-1Q.Seq.d
CAACAATAGCAATAATAGAGGTATTCCAACCAATTATCAACAATATCCAC
CTCAAAATTATCAACAATATCCACCACAACAATATTATCAAGCACCAATA
AATCCACAACAATTCTACCCAGGTCCACCACAACAACCAAATTTTGTTTC
ACAACAAACAGGACCAATACCACAACAACCACCTGGTTTCAATAATCAAT
CACCAATTCCACAACAACAACCACAACAACCACAACAACCACAACCATCC
CAACCATCACCAATTCCACAACAACCTTTATCACCTCAATCATCATCACC
ATCTTCACCACAACATGTTGTAATTCAACCAAACCAACCAAATCAACAAC
AACAAAATGCAAATAGAAAACAAAGTGCTTTGAAACCATCAGTTCAACAT
AATACTATACCAAATATACCAAGAACTCATTCAGCACCGCCAAGTTTGGA
AGAGCAACAACAACAACATCAACATCAAAATAACATTAAAGGATTTACAC
CAGAGAAGAGAACACCAATTCAACATTCACCTCAATATGTGATTCCTCCA
CAACAATTTGGTAAGCCAATATATCCAAATCCACAACAAATGTATTTTCA
ACAACAACCTCCATATCCTTATTATGGACAACCACCAGTTGTGCCAGTGG
TTAATCAAATGATTCCTCAAACTACAGGGAAGAAAACATTGGAAATTATT
GATCCAAAAACCAATGAAAAGGTCATCATTACATCACCACCAAAATCTTC
AACAAACTCGACAGTCTTACCAACTTCAAATACATCATCATCATCATCAT
CACCAACCAATGCTAATGGCAGCTCAACTCCTTCAGGTAGTGGTTATGTC
ACTTCATTCAGTAGTGGTAATGTTAATTTGAGAAAGAATAAACAATCTGG
TGAAACTACCCCAATTAAACAAGATGCTGCTTCAACCACAACTTCAACAC
CTGCCACTCCATCTTCAAAAGCAGAGTCAACCACTGAAGCTGAAACCACT
AGTAAACCTTCAACTCCTACTACCGTTGATTCTGTCTCAAGTACTACAAC
TCCAGACAAATCAAATGTTGTTACTGCTGCTGCTACCACCACTGCCGCCG
CCACCACCACCACTACTACTACTGATACTACCACTACCACCACTACACCA
GAAGCTGAAACTTCAACCACCACTCCAGCAACTGAAGTTCAATCACCAGT
GGAAACAACCAAGGAAGAGCAACCAAAAGAAGAGGTTAAACCAACTGAAG
TCCAACCACCAGTGGAACCAACAAAGGAAGAACCAATAAAGGAAGAACCA
ACAAATGAAGAACCAACAAAAGAAGAACCAGCCAAGGTAGAACCAATTAA
AGAAGAGCCATCAGTTGTTGAATCTACTACTACCGACACCAAAGAAGAAC
CAATCATTGTTGCTGAAGAGAAAAAGCAAGAAGAGACACCAGTAACTCCA
GTAACTGAAAAGAAAGAGGAGCCAATTGTTAAACCAGAAACTCCAGTTAC
TGATTCAACTGCTGCTAGTACTACTGTTGAAAAAGAATCAACTGATTCAA
CCACTACAGCAACTGTATCAACTACAGCTGCAGCAACAACAACAAATGGT
AAGGTTGAAGAAGAACTTGAAGAATGGGAAAAGAAAGGAGAAGAAGATTT
CAATATTGTTCAATCATCTGATTCATCAACTTCTATTACACCAGCTACAT
CATTGGTATTTAGAAATAGTGGTGAAAAAATTGTTTATTCAAAGGAATTG
ATGATGAGTCTCAAACCAAAATCAATGGAAGAACCAACTGGTCCATTAAA
GGATTTGAAGAATCAAATTGAAACCAATACCAATCAAAATCAATTGAATA
GATCAGGCAATAAGATTGGTGGTAATCAACAAAACAAAAACATGGGTATG
GGTGGTATGAATATGAATCCAAACTATCCACCACAAATGAATATGAAATA
TCCACCACAAATGAATATGAAATATCCACCAAAGAACTTTAACAACCAAG
TTCAAGGTCAACAACAACAACAACAAGGTAATCCAAACTTTAATAAATAT
GCACCAGGTTATCAATACCAACAACAAATTCAACAAGGTATGCCACCACC
AACTTTACAACCAAATCCATACCAACCACAACAAGCACAACAGTGTCAAC
AACAATAAACAATTTAAAAAAAAAAAAAAAA----------CATTGATCA
AGAAATTAATCTTTGCCTCGGTTTTTGATAAAAAACTTTTCACAACAGCT
CAATTCAAGAGTGGTTATGAATTGTTCATCTCTTCATTACCAGATTTATT
CGAAGATCGTCCATCTGCCTTTAAATCGGTCGCTTCTGTATTCTAGTTTT
GTATTAAATCAAGAGGGTCTCATCACCATTACACAATTTGCCAATGCTTT
CACAAAGGTTTTGGATGATTGTGGTTCTTCCATTCCAAAGATTCTCTTTG
AATTTATACTCCAATTTGAAGATCCAAAGAAAGCTGCTCAATTGTTTGTT
GATAACAAAGTTGGTGTTCAAGGTTTCTTTACTGAAAAAGATTTCTCAAA
AATTACCCAAACTGCAATCTCTTACAACAAAGATCTTCAACCATTTTTTG
ATATTGTTAAACTTTAAAAAATAAATAAAAAAAAA

Gap gap included
Contig length 2625
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 5334786
End point 5332158
Strand (PLUS/MINUS) MINUS
Number of clones 5
Number of EST 7
Link to clone list U11246
List of clone(s)

est1=SLB719F,1,655
est2=AHN823Z,579,1290
est3=VHN843Z,1129,1604
est4=AHC761F,1516,2114
est5=SLB719Z,1847,2182
est6=VSI803F,2183,2627
est7=AHC761Z,2333,2583
Translated Amino Acid sequence
tiaiievfqpiinnihlkiinnihhnniikhq*ihnnstqvhhnnqilfhnkqdqyhnnh
lvsiinhqfhnnnhnnhnnhnhpnhhqfhnnlyhlnhhhhlhhnml*fnqtnqinnnkmq
ienkvl*nhqfniilyqiyqeliqhrqvwksnnnninikitlkdlhqrrehqfnihlnm*
flhnnlvsqyiqihnkcifnnnlhilimdnhqlcqwlik*flklqgrkhwklliqkpmkr
sslhhhqnlqqtrqsyqlqihhhhhhhqpmlmaaqllqvvvmslhsvvvmli*erinnlv
klpqlnkmllqpqlqhlplhlqkqsqplklkplvnlqlllplilsqvlqlqtnqmlllll
lpplppppppllllilplpplhqklklqpplqqlkfnhqwkqprksnqkkrlnqlksnhq
wnqqrknq*rknqqmknqqkknqpr*nqlkkshqllnlllptpkknqslllkrkskkrhq
*lq*lkrkrsqllnqklqlliqlllvlllkknqliqplqqlyqlqlqqqqqmvrlkknlk
ngkrkekkisilfnhlihqlllhqlhhwyleivvkklfiqrn***vsnqnqwknqlvh*r
i*riklkpipikin*idqairlvvinktktwvwvv*i*iqtihhk*i*nihhk*i*NIHQ
RTLTTKFKVNNNNNKVIQTLINMHQVINTNNKFNKVCHHQLYNQIHTNHNKHNSVNNNKQ
FKKKKK---

---LIKKLIFASVFDKKLFTTAQFKSGYELFISSLPDLFEDRPSAFKSVASVF*fciksr
gshhhyticqcfhkgfg*lwffhskdsl*iytpi*rskescsivc**qswcsrfly*krf
lknypncnllqqrsstif*yc*tlknk*kk


Translated Amino Acid sequence (All Frames)
Frame A:
qq*q**rysnqlstistsklstistttilsstnksttilprsttttkfcfttnrtntttt
twfq*sitnsttttttttttttiptitnstttfitsiiitiftttccnstkptkstttkc
k*ktkcfetisst*yytkytknsfstakfgrattttstsk*h*riytreentnstftsic
dssttiw*anisksttnvfstttsisllwtttscasg*sndssnyreenigny*sknq*k
ghhyittkifnkldsltnfkyiiiiiitnqc*wqlnsfr*wlchfiq*w*c*feke*tiw
*nypn*trccfnhnfntchsifksrvnh*s*nh**tfnsyyr*fclkyynsrqikccycc
cyhhcrrhhhhyyy*yyhyhhytrs*nfnhhssn*ssitsgnnqgratkrrg*tn*sptt
sgtnkgrtnkgrtnk*rtnkrrtsqgrtn*rraisc*iyyyrhqrrtnhcc*rekarrdt
snssn*kerganc*trnssy*fncc*yyc*krin*fnhysncinyscsnnnkw*g*rrt*
rmgkerrrrfqycsii*finfyytsyiigi*k*w*knclfkgiddesqtkingrtnwsik
gfeesn*nqyqsksie*irq*dww*stkqkhgygwyeyesklsttneyeisttneyeist
kel*qpssrstttttr*skl**ictrlsipttnstryattnfttksiptttsttvsttin
nlkkkkk---

---h*srn*slprfliknfsqqlnsrvvmncsslhyqiyskivhlplnrsllyssfvlnq
eglititqfanaftkvlddcgssipkilfefilqfedpkkaaqlfvdnkvgvqgfftekd
fskitqtaisynkdlqpffdivkl*kinkkk

Frame B:
nnsnnrgiptnyqqyppqnyqqyppqqyyqapinpqqfypgppqqpnfvsqqtgpipqqp
pgfnnqspipqqqpqqpqqpqpsqpspipqqplspqssspsspqhvviqpnqpnqqqqna
nrkqsalkpsvqhntipniprthsappsleeqqqqhqhqnnikgftpekrtpiqhspqyv
ippqqfgkpiypnpqqmyfqqqppypyygqppvvpvvnqmipqttgkktleiidpktnek
viitsppksstnstvlptsntssssssptnangsstpsgsgyvtsfssgnvnlrknkqsg
ettpikqdaastttstpatpsskaestteaettskpstpttvdsvsstttpdksnvvtaa
atttaaatttttttdtttttttpeaetstttpatevqspvettkeeqpkeevkptevqpp
veptkeepikeeptneeptkeepakvepikeepsvvestttdtkeepiivaeekkqeetp
vtpvtekkeepivkpetpvtdstaasttvekestdstttatvsttaaatttngkveeele
ewekkgeedfnivqssdsstsitpatslvfrnsgekivyskelmmslkpksmeeptgplk
dlknqietntnqnqlnrsgnkiggnqqnknmgmggmnmnpnyppqmnmkyppqmnmkypp
knfnnqvqgqqqqqqgnpnfnkyapgyqyqqqiqqgmppptlqpnpyqpqqaqqcqqq*t
i*kkkk---

---idqeinlclgf**ktfhnssiqewl*ivhlfitrfirrssicl*igrfcilvly*ik
rvssplhnlpmlsqrfwmivvlpfqrfslnlysnlkiqrkllncllitklvfkvsllkki
sqklpklqslttkifnhflillnfkk*ikk

Frame C:
tiaiievfqpiinnihlkiinnihhnniikhq*ihnnstqvhhnnqilfhnkqdqyhnnh
lvsiinhqfhnnnhnnhnnhnhpnhhqfhnnlyhlnhhhhlhhnml*fnqtnqinnnkmq
ienkvl*nhqfniilyqiyqeliqhrqvwksnnnninikitlkdlhqrrehqfnihlnm*
flhnnlvsqyiqihnkcifnnnlhilimdnhqlcqwlik*flklqgrkhwklliqkpmkr
sslhhhqnlqqtrqsyqlqihhhhhhhqpmlmaaqllqvvvmslhsvvvmli*erinnlv
klpqlnkmllqpqlqhlplhlqkqsqplklkplvnlqlllplilsqvlqlqtnqmlllll
lpplppppppllllilplpplhqklklqpplqqlkfnhqwkqprksnqkkrlnqlksnhq
wnqqrknq*rknqqmknqqkknqpr*nqlkkshqllnlllptpkknqslllkrkskkrhq
*lq*lkrkrsqllnqklqlliqlllvlllkknqliqplqqlyqlqlqqqqqmvrlkknlk
ngkrkekkisilfnhlihqlllhqlhhwyleivvkklfiqrn***vsnqnqwknqlvh*r
i*riklkpipikin*idqairlvvinktktwvwvv*i*iqtihhk*i*nihhk*i*NIHQ
RTLTTKFKVNNNNNKVIQTLINMHQVINTNNKFNKVCHHQLYNQIHTNHNKHNSVNNNKQ
FKKKKK---

---LIKKLIFASVFDKKLFTTAQFKSGYELFISSLPDLFEDRPSAFKSVASVF*fciksr
gshhhyticqcfhkgfg*lwffhskdsl*iytpi*rskescsivc**qswcsrfly*krf
lknypncnllqqrsstif*yc*tlknk*kk

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U11246-1 (Contig-U11246-1Q)
/CSM_Contig/Contig-U11246-1Q.Seq.d
(2635 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U11246-1 (Contig-U11246-1Q) /CSM_Contig/Conti... 900 0.0
Contig-U11649-1 (Contig-U11649-1Q) /CSM_Contig/Conti... 80 1e-14
Contig-U11908-1 (Contig-U11908-1Q) /CSM_Contig/Conti... 48 5e-05
Contig-U09098-1 (Contig-U09098-1Q) /CSM_Contig/Conti... 48 5e-05
Contig-U08866-1 (Contig-U08866-1Q) /CSM_Contig/Conti... 46 2e-04
Contig-U04603-1 (Contig-U04603-1Q) /CSM_Contig/Conti... 46 2e-04
Contig-U11830-1 (Contig-U11830-1Q) /CSM_Contig/Conti... 44 8e-04
Contig-U11611-1 (Contig-U11611-1Q) /CSM_Contig/Conti... 44 8e-04
Contig-U06988-1 (Contig-U06988-1Q) /CSM_Contig/Conti... 44 8e-04
Contig-U05238-1 (Contig-U05238-1Q) /CSM_Contig/Conti... 44 8e-04

>Contig-U11246-1 (Contig-U11246-1Q) /CSM_Contig/Contig-U11246-1Q.Seq.d
Length = 2635

Score = 900 bits (454), Expect = 0.0
Identities = 454/454 (100%)
Strand = Plus / Plus


Query: 1151 gaagctgaaacttcaaccaccactccagcaactgaagttcaatcaccagtggaaacaacc 1210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1151 gaagctgaaacttcaaccaccactccagcaactgaagttcaatcaccagtggaaacaacc 1210


Query: 1211 aaggaagagcaaccaaaagaagaggttaaaccaactgaagtccaaccaccagtggaacca 1270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1211 aaggaagagcaaccaaaagaagaggttaaaccaactgaagtccaaccaccagtggaacca 1270


Query: 1271 acaaaggaagaaccaataaaggaagaaccaacaaatgaagaaccaacaaaagaagaacca 1330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1271 acaaaggaagaaccaataaaggaagaaccaacaaatgaagaaccaacaaaagaagaacca 1330


Query: 1331 gccaaggtagaaccaattaaagaagagccatcagttgttgaatctactactaccgacacc 1390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1331 gccaaggtagaaccaattaaagaagagccatcagttgttgaatctactactaccgacacc 1390


Query: 1391 aaagaagaaccaatcattgttgctgaagagaaaaagcaagaagagacaccagtaactcca 1450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1391 aaagaagaaccaatcattgttgctgaagagaaaaagcaagaagagacaccagtaactcca 1450


Query: 1451 gtaactgaaaagaaagaggagccaattgttaaaccagaaactccagttactgattcaact 1510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1451 gtaactgaaaagaaagaggagccaattgttaaaccagaaactccagttactgattcaact 1510


Query: 1511 gctgctagtactactgttgaaaaagaatcaactgattcaaccactacagcaactgtatca 1570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1511 gctgctagtactactgttgaaaaagaatcaactgattcaaccactacagcaactgtatca 1570


Query: 1571 actacagctgcagcaacaacaacaaatggtaagg 1604
||||||||||||||||||||||||||||||||||
Sbjct: 1571 actacagctgcagcaacaacaacaaatggtaagg 1604


Score = 841 bits (424), Expect = 0.0
Identities = 424/424 (100%)
Strand = Plus / Plus


Query: 2192 cattgatcaagaaattaatctttgcctcggtttttgataaaaaacttttcacaacagctc 2251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2192 cattgatcaagaaattaatctttgcctcggtttttgataaaaaacttttcacaacagctc 2251


Query: 2252 aattcaagagtggttatgaattgttcatctcttcattaccagatttattcgaagatcgtc 2311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2252 aattcaagagtggttatgaattgttcatctcttcattaccagatttattcgaagatcgtc 2311


Query: 2312 catctgcctttaaatcggtcgcttctgtattctagttttgtattaaatcaagagggtctc 2371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2312 catctgcctttaaatcggtcgcttctgtattctagttttgtattaaatcaagagggtctc 2371


Query: 2372 atcaccattacacaatttgccaatgctttcacaaaggttttggatgattgtggttcttcc 2431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2372 atcaccattacacaatttgccaatgctttcacaaaggttttggatgattgtggttcttcc 2431


Query: 2432 attccaaagattctctttgaatttatactccaatttgaagatccaaagaaagctgctcaa 2491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2432 attccaaagattctctttgaatttatactccaatttgaagatccaaagaaagctgctcaa 2491


Query: 2492 ttgtttgttgataacaaagttggtgttcaaggtttctttactgaaaaagatttctcaaaa 2551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2492 ttgtttgttgataacaaagttggtgttcaaggtttctttactgaaaaagatttctcaaaa 2551


Query: 2552 attacccaaactgcaatctcttacaacaaagatcttcaaccattttttgatattgttaaa 2611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2552 attacccaaactgcaatctcttacaacaaagatcttcaaccattttttgatattgttaaa 2611


Query: 2612 cttt 2615
||||
Sbjct: 2612 cttt 2615


Score = 809 bits (408), Expect = 0.0
Identities = 408/408 (100%)
Strand = Plus / Plus


Query: 375 gtgctttgaaaccatcagttcaacataatactataccaaatataccaagaactcattcag 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gtgctttgaaaccatcagttcaacataatactataccaaatataccaagaactcattcag 434


Query: 435 caccgccaagtttggaagagcaacaacaacaacatcaacatcaaaataacattaaaggat 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 caccgccaagtttggaagagcaacaacaacaacatcaacatcaaaataacattaaaggat 494


Query: 495 ttacaccagagaagagaacaccaattcaacattcacctcaatatgtgattcctccacaac 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ttacaccagagaagagaacaccaattcaacattcacctcaatatgtgattcctccacaac 554


Query: 555 aatttggtaagccaatatatccaaatccacaacaaatgtattttcaacaacaacctccat 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 aatttggtaagccaatatatccaaatccacaacaaatgtattttcaacaacaacctccat 614


Query: 615 atccttattatggacaaccaccagttgtgccagtggttaatcaaatgattcctcaaacta 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 atccttattatggacaaccaccagttgtgccagtggttaatcaaatgattcctcaaacta 674


Query: 675 cagggaagaaaacattggaaattattgatccaaaaaccaatgaaaaggtcatcattacat 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 cagggaagaaaacattggaaattattgatccaaaaaccaatgaaaaggtcatcattacat 734


Query: 735 caccaccaaaatcttcaacaaactcgacagtcttaccaacttcaaata 782
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 caccaccaaaatcttcaacaaactcgacagtcttaccaacttcaaata 782


Score = 716 bits (361), Expect = 0.0
Identities = 361/361 (100%)
Strand = Plus / Plus


Query: 1648 tttcaatattgttcaatcatctgattcatcaacttctattacaccagctacatcattggt 1707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1648 tttcaatattgttcaatcatctgattcatcaacttctattacaccagctacatcattggt 1707


Query: 1708 atttagaaatagtggtgaaaaaattgtttattcaaaggaattgatgatgagtctcaaacc 1767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1708 atttagaaatagtggtgaaaaaattgtttattcaaaggaattgatgatgagtctcaaacc 1767


Query: 1768 aaaatcaatggaagaaccaactggtccattaaaggatttgaagaatcaaattgaaaccaa 1827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1768 aaaatcaatggaagaaccaactggtccattaaaggatttgaagaatcaaattgaaaccaa 1827


Query: 1828 taccaatcaaaatcaattgaatagatcaggcaataagattggtggtaatcaacaaaacaa 1887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1828 taccaatcaaaatcaattgaatagatcaggcaataagattggtggtaatcaacaaaacaa 1887


Query: 1888 aaacatgggtatgggtggtatgaatatgaatccaaactatccaccacaaatgaatatgaa 1947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1888 aaacatgggtatgggtggtatgaatatgaatccaaactatccaccacaaatgaatatgaa 1947


Query: 1948 atatccaccacaaatgaatatgaaatatccaccaaagaactttaacaaccaagttcaagg 2007
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1948 atatccaccacaaatgaatatgaaatatccaccaaagaactttaacaaccaagttcaagg 2007


Query: 2008 t 2008
|
Sbjct: 2008 t 2008


Score = 591 bits (298), Expect = e-168
Identities = 298/298 (100%)
Strand = Plus / Plus


Query: 803 ccaaccaatgctaatggcagctcaactccttcaggtagtggttatgtcacttcattcagt 862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 ccaaccaatgctaatggcagctcaactccttcaggtagtggttatgtcacttcattcagt 862


Query: 863 agtggtaatgttaatttgagaaagaataaacaatctggtgaaactaccccaattaaacaa 922
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 agtggtaatgttaatttgagaaagaataaacaatctggtgaaactaccccaattaaacaa 922


Query: 923 gatgctgcttcaaccacaacttcaacacctgccactccatcttcaaaagcagagtcaacc 982
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 923 gatgctgcttcaaccacaacttcaacacctgccactccatcttcaaaagcagagtcaacc 982


Query: 983 actgaagctgaaaccactagtaaaccttcaactcctactaccgttgattctgtctcaagt 1042
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 983 actgaagctgaaaccactagtaaaccttcaactcctactaccgttgattctgtctcaagt 1042


Query: 1043 actacaactccagacaaatcaaatgttgttactgctgctgctaccaccactgccgccg 1100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1043 actacaactccagacaaatcaaatgttgttactgctgctgctaccaccactgccgccg 1100


Score = 383 bits (193), Expect = e-106
Identities = 193/193 (100%)
Strand = Plus / Plus


Query: 1 caacaatagcaataatagaggtattccaaccaattatcaacaatatccacctcaaaatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caacaatagcaataatagaggtattccaaccaattatcaacaatatccacctcaaaatta 60


Query: 61 tcaacaatatccaccacaacaatattatcaagcaccaataaatccacaacaattctaccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcaacaatatccaccacaacaatattatcaagcaccaataaatccacaacaattctaccc 120


Query: 121 aggtccaccacaacaaccaaattttgtttcacaacaaacaggaccaataccacaacaacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aggtccaccacaacaaccaaattttgtttcacaacaaacaggaccaataccacaacaacc 180


Query: 181 acctggtttcaat 193
|||||||||||||
Sbjct: 181 acctggtttcaat 193


Score = 276 bits (139), Expect = 1e-73
Identities = 139/139 (100%)
Strand = Plus / Plus


Query: 2027 ggtaatccaaactttaataaatatgcaccaggttatcaataccaacaacaaattcaacaa 2086
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2027 ggtaatccaaactttaataaatatgcaccaggttatcaataccaacaacaaattcaacaa 2086


Query: 2087 ggtatgccaccaccaactttacaaccaaatccataccaaccacaacaagcacaacagtgt 2146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2087 ggtatgccaccaccaactttacaaccaaatccataccaaccacaacaagcacaacagtgt 2146


Query: 2147 caacaacaataaacaattt 2165
|||||||||||||||||||
Sbjct: 2147 caacaacaataaacaattt 2165


Score = 97.6 bits (49), Expect = 6e-20
Identities = 49/49 (100%)
Strand = Plus / Plus


Query: 276 ctttatcacctcaatcatcatcaccatcttcaccacaacatgttgtaat 324
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ctttatcacctcaatcatcatcaccatcttcaccacaacatgttgtaat 324


Score = 32.2 bits (16), Expect = 2.9
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 2123 caaccacaacaagcacaaca 2142
|||||||||||| |||||||
Sbjct: 218 caaccacaacaaccacaaca 237


>Contig-U11649-1 (Contig-U11649-1Q) /CSM_Contig/Contig-U11649-1Q.Seq.d
Length = 1794

Score = 79.8 bits (40), Expect = 1e-14
Identities = 40/40 (100%)
Strand = Plus / Plus


Query: 2126 ccacaacaagcacaacagtgtcaacaacaataaacaattt 2165
||||||||||||||||||||||||||||||||||||||||
Sbjct: 1406 ccacaacaagcacaacagtgtcaacaacaataaacaattt 1445


>Contig-U11908-1 (Contig-U11908-1Q) /CSM_Contig/Contig-U11908-1Q.Seq.d
Length = 1899

Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus


Query: 455 caacaacaacaacatcaacatcaa 478
||||||||||||||||||||||||
Sbjct: 971 caacaacaacaacatcaacatcaa 994


Score = 40.1 bits (20), Expect = 0.012
Identities = 23/24 (95%)
Strand = Plus / Plus


Query: 455 caacaacaacaacatcaacatcaa 478
|||||||| |||||||||||||||
Sbjct: 977 caacaacatcaacatcaacatcaa 1000


Score = 40.1 bits (20), Expect = 0.012
Identities = 23/24 (95%)
Strand = Plus / Plus


Query: 455 caacaacaacaacatcaacatcaa 478
|||||||||||||| |||||||||
Sbjct: 965 caacaacaacaacaacaacatcaa 988


Score = 38.2 bits (19), Expect = 0.047
Identities = 22/23 (95%)
Strand = Plus / Plus


Query: 455 caacaacaacaacatcaacatca 477
||||||||||||||||| |||||
Sbjct: 437 caacaacaacaacatcagcatca 459


Score = 38.2 bits (19), Expect = 0.047
Identities = 22/23 (95%)
Strand = Plus / Plus


Query: 455 caacaacaacaacatcaacatca 477
|||||||||||||| ||||||||
Sbjct: 431 caacaacaacaacaacaacatca 453


Score = 34.2 bits (17), Expect = 0.74
Identities = 20/21 (95%)
Strand = Plus / Plus


Query: 458 caacaacaacatcaacatcaa 478
||||| |||||||||||||||
Sbjct: 986 caacatcaacatcaacatcaa 1006


Score = 34.2 bits (17), Expect = 0.74
Identities = 20/21 (95%)
Strand = Plus / Plus


Query: 458 caacaacaacatcaacatcaa 478
||||| |||||||||||||||
Sbjct: 992 caacatcaacatcaacatcaa 1012


Score = 34.2 bits (17), Expect = 0.74
Identities = 20/21 (95%)
Strand = Plus / Plus


Query: 458 caacaacaacatcaacatcaa 478
||||| |||||||||||||||
Sbjct: 1004 caacatcaacatcaacatcaa 1024


Score = 34.2 bits (17), Expect = 0.74
Identities = 20/21 (95%)
Strand = Plus / Plus


Query: 458 caacaacaacatcaacatcaa 478
||||| |||||||||||||||
Sbjct: 998 caacatcaacatcaacatcaa 1018


Score = 32.2 bits (16), Expect = 2.9
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 458 caacaacaacatcaacatca 477
||||| ||||||||||||||
Sbjct: 1010 caacatcaacatcaacatca 1029


Score = 32.2 bits (16), Expect = 2.9
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 455 caacaacaacaacatcaaca 474
|||||||||||||| |||||
Sbjct: 428 caacaacaacaacaacaaca 447


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 48,415
Number of Sequences: 6905
Number of extensions: 48415
Number of successful extensions: 10511
Number of sequences better than 10.0: 747
length of query: 2635
length of database: 5,674,871
effective HSP length: 17
effective length of query: 2618
effective length of database: 5,557,486
effective search space: 14549498348
effective search space used: 14549498348
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)
dna update 2008.11.23
Homology vs DNA
Query= Contig-U11246-1 (Contig-U11246-1Q) /CSM_Contig/Contig-U11246-1Q.Seq.d
(2635 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ355781) Dictyostelium discoideum cDNA clone:dda58n06, 3' ... 533 0.0 4
(BJ331680) Dictyostelium discoideum cDNA clone:dda36j15, 5' ... 708 0.0 4
(AU060850) Dictyostelium discoideum slug cDNA, clone SLB719. 557 0.0 3
(AU269250) Dictyostelium discoideum vegetative cDNA clone:VS... 841 0.0 1
(BJ445059) Dictyostelium discoideum cDNA clone:ddv58f12, 3' ... 515 0.0 2
(AU034004) Dictyostelium discoideum slug cDNA, clone SLB719. 305 e-111 2
(BJ349481) Dictyostelium discoideum cDNA clone:dda36j15, 3' ... 367 1e-96 1
(AU269251) Dictyostelium discoideum vegetative cDNA clone:VS... 137 2e-27 1
(EY328158) CAWY1366.fwd CAWY Helobdella robusta Subtracted E... 36 4e-05 5
(AY588394) Humulus lupulus clone HlACA8 microsatellite seque... 56 4e-04 2
(DQ002662) Aegilops speltoides clone 23_H06 alpha-gliadin st... 34 4e-04 4
(EU401787) Triticum turgidum subsp. paleocolchicum clone 1-2... 34 6e-04 4
(BJ232460) Triticum aestivum cDNA clone:whe12j24, 5' end, si... 34 6e-04 4
(AC139324) Mus musculus chromosome 18 clone RP24-393N23, com... 42 8e-04 8
(BJ233243) Triticum aestivum cDNA clone:whe3n13, 5' end, sin... 34 9e-04 4
(EB324296) CNSN01-F-102315-501 Normalized CNS library (juven... 48 9e-04 3
(EA211815) Sequence 76130 from patent US 7214786. 34 0.001 4
(BQ807055) WHE3586_C04_F08ZS Wheat developing grains cDNA li... 34 0.001 4
(CJ633337) Triticum aestivum cDNA clone whdp14l07 5', Y.Ogih... 34 0.001 4
(EY351311) CAWZ18053.fwd CAWZ Helobdella robusta Primary Lat... 40 0.001 4
(BE431137) SUN011.G09F991223 ITEC SUN Wheat cDNA Library Tri... 32 0.001 5
(EA234236) Sequence 98551 from patent US 7214786. 34 0.001 4
(CA717403) wdk4c.pk005.g6 wdk4c Triticum aestivum cDNA clone... 34 0.001 4
(AF153362) Dictyostelium discoideum adenylyl cyclase (acrA) ... 48 0.002 6
(CV219481) EST879191 non-normalized T1 cDNA library Trichomo... 34 0.002 3
(CV219480) EST879190 non-normalized T1 cDNA library Trichomo... 34 0.002 3
(BQ246355) TaE15012H02R TaE15 Triticum aestivum cDNA clone T... 44 0.002 4
(AR548024) Sequence 3155 from patent US 6747137. 36 0.002 4
(BJ236569) Triticum aestivum cDNA clone:whe22d09, 5' end, si... 32 0.002 4
(I03366) Sequence 5 from Patent US 4826765. 34 0.002 4
(BF293702) WHE2154_A05_B10ZS Triticum turgidum L. var. durum... 36 0.003 4
(BJ233090) Triticum aestivum cDNA clone:whe3e19, 5' end, sin... 34 0.003 4
(EA203997) Sequence 68312 from patent US 7214786. 34 0.003 4
(BJ236455) Triticum aestivum cDNA clone:whe21m10, 5' end, si... 34 0.003 4
(BJ233388) Triticum aestivum cDNA clone:whe4h04, 5' end, sin... 34 0.003 4
(EA201214) Sequence 65529 from patent US 7214786. 34 0.003 4
(BF473534) WHE0929_E01_I01ZS Wheat 5-15 DAP spike cDNA libra... 34 0.003 4
(BJ236269) Triticum aestivum cDNA clone:whe21b04, 5' end, si... 34 0.003 4
(CA712798) wdk3c.pk015.i20 wdk3c Triticum aestivum cDNA clon... 32 0.003 4
(BJ232457) Triticum aestivum cDNA clone:whe12j20, 5' end, si... 34 0.003 4
(EA144403) Sequence 8718 from patent US 7214786. 36 0.003 4
(BJ232608) Triticum aestivum cDNA clone:whe1d07, 5' end, sin... 34 0.003 4
(BJ232740) Triticum aestivum cDNA clone:whe1m12, 5' end, sin... 34 0.003 4
(BJ232590) Triticum aestivum cDNA clone:whe1c05, 5' end, sin... 34 0.004 4
(CJ633284) Triticum aestivum cDNA clone whdp14i07 5', Y.Ogih... 34 0.004 4
(BJ237270) Triticum aestivum cDNA clone:whe25c08, 5' end, si... 34 0.004 4
(BQ838716) WHE3591_H04_O07ZS Wheat developing grains cDNA li... 34 0.004 4
(BE606345) WHE0905_A07_A13ZS Wheat 5-15 DAP spike cDNA libra... 32 0.004 4
(CJ635008) Triticum aestivum cDNA clone whdp1l11 5', Y.Ogiha... 34 0.004 4
(DQ002796) Aegilops tauschii clone 2-B10 alpha-gliadin stora... 36 0.004 4
(DQ002790) Aegilops tauschii clone 8-A08 alpha-gliadin stora... 36 0.004 4
(DQ002785) Aegilops tauschii clone 8-B10 alpha-gliadin stora... 36 0.004 4
(DQ002778) Aegilops tauschii clone 8-C07 alpha-gliadin stora... 36 0.004 4
(DQ002761) Aegilops tauschii clone 8-F03 alpha-gliadin stora... 36 0.004 4
(DQ002752) Aegilops tauschii clone 8-G04 alpha-gliadin stora... 36 0.004 4
(DQ002741) Aegilops tauschii clone 8-H07 alpha-gliadin stora... 36 0.004 4
(DQ002738) Aegilops tauschii clone 8-H11 alpha-gliadin stora... 36 0.004 4
(BQ806479) WHE3579_E10_I19ZS Wheat developing grains cDNA li... 34 0.004 4
(EA193867) Sequence 58182 from patent US 7214786. 34 0.004 4
(EA211874) Sequence 76189 from patent US 7214786. 34 0.005 4
(BQ838742) WHE3592_B10_C20ZS Wheat developing grains cDNA li... 34 0.005 4
(EH013428) USDA-FP_186229 Lysiphlebus testaceipes adult whol... 44 0.005 2
(EA211816) Sequence 76131 from patent US 7214786. 34 0.005 4
(BQ807060) WHE3586_C09_F18ZS Wheat developing grains cDNA li... 34 0.005 4
(CA717420) wdk4c.pk005.d21 wdk4c Triticum aestivum cDNA clon... 32 0.005 4
(CA717592) wdk4c.pk006.p6 wdk4c Triticum aestivum cDNA clone... 32 0.005 4
(DQ659323) Papaver rhoeas CIN-like protein (PapB) gene, part... 50 0.006 2
(EY374591) CAXA15159.fwd CAXA Helobdella robusta Subtracted ... 36 0.006 3
(DQ002704) Aegilops longissima clone 24_D09 alpha-gliadin st... 34 0.006 4
(BE637454) WHE0859_F11_K21ZS Wheat 20-45 DAP spike cDNA libr... 32 0.006 4
(BJ236879) Triticum aestivum cDNA clone:whe23i15, 5' end, si... 32 0.006 4
(CA712452) wdk3c.pk005.l8 wdk3c Triticum aestivum cDNA clone... 32 0.006 4
(BF292807) WHE2165_B03_D05ZS Triticum turgidum L. var. durum... 32 0.006 4
(BE497971) WHE0958_B09_D18ZS Wheat pre-anthesis spike cDNA l... 32 0.006 4
(BJ234515) Triticum aestivum cDNA clone:whe5j20, 5' end, sin... 32 0.006 4
(CA727234) wde1f.pk003.d6 wde1f Triticum aestivum cDNA clone... 32 0.006 4
(CA727194) wde1f.pk003.b18 wde1f Triticum aestivum cDNA clon... 32 0.007 4
(BJ234362) Triticum aestivum cDNA clone:whe9n13, 5' end, sin... 32 0.007 4
(BJ236947) Triticum aestivum cDNA clone:whe23m13, 5' end, si... 32 0.007 4
(BE606294) WHE0905_F02_K03ZS Wheat 5-15 DAP spike cDNA libra... 32 0.007 4
(AC129259) Rattus norvegicus clone CH230-15K6, WORKING DRAFT... 56 0.007 1
(AC095269) Rattus norvegicus clone CH230-10G10, *** SEQUENCI... 56 0.007 1
(EF569978) Triticum aestivum subsp. sphaerococcum alpha-glia... 34 0.007 4
(EF561274) Triticum aestivum alpha-gliadin (Gli-G1) mRNA, co... 34 0.007 4
(DQ417343) Triticum aestivum alpha-gliadin Gli2-LM2-12 gene,... 34 0.007 4
(DQ296195) Triticum turgidum subsp. durum clone FEI1 alpha-g... 34 0.007 4
(BG262147) WHE0871_D09_G17ZS Wheat 20-45 DAP spike cDNA libr... 32 0.007 4
(BJ234176) Triticum aestivum cDNA clone:whe8p14, 5' end, sin... 32 0.007 4
(BJ233314) Triticum aestivum cDNA clone:whe4b24, 5' end, sin... 32 0.007 4
(CA734245) wde2f.pk002.g1 wde2f Triticum aestivum cDNA clone... 32 0.007 4
(BJ237418) Triticum aestivum cDNA clone:whe25l16, 5' end, si... 32 0.007 4
(CA726909) wde1f.pk002.k18 wde1f Triticum aestivum cDNA clon... 32 0.008 4
(BJ233701) Triticum aestivum cDNA clone:whe6n13, 5' end, sin... 32 0.008 4
(BJ392337) Dictyostelium discoideum cDNA clone:dds27d12, 5' ... 32 0.008 5
(BJ235140) Triticum aestivum cDNA clone:whe15f13, 5' end, si... 32 0.008 4
(CA734361) wde2f.pk003.d12 wde2f Triticum aestivum cDNA clon... 32 0.008 4
(CA727216) wde1f.pk003.f18 wde1f Triticum aestivum cDNA clon... 32 0.008 4
(CA727282) wde1f.pk003.c12 wde1f Triticum aestivum cDNA clon... 32 0.008 4
(CA727329) wde1f.pk003.h23 wde1f Triticum aestivum cDNA clon... 32 0.008 4
(BJ236223) Triticum aestivum cDNA clone:whe20o13, 5' end, si... 32 0.008 4

>(BJ355781) Dictyostelium discoideum cDNA clone:dda58n06, 3' end,
single read.
Length = 710

Score = 533 bits (269), Expect(4) = 0.0
Identities = 269/269 (100%)
Strand = Plus / Minus


Query: 803 ccaaccaatgctaatggcagctcaactccttcaggtagtggttatgtcacttcattcagt 862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ccaaccaatgctaatggcagctcaactccttcaggtagtggttatgtcacttcattcagt 427


Query: 863 agtggtaatgttaatttgagaaagaataaacaatctggtgaaactaccccaattaaacaa 922
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 agtggtaatgttaatttgagaaagaataaacaatctggtgaaactaccccaattaaacaa 367


Query: 923 gatgctgcttcaaccacaacttcaacacctgccactccatcttcaaaagcagagtcaacc 982
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gatgctgcttcaaccacaacttcaacacctgccactccatcttcaaaagcagagtcaacc 307


Query: 983 actgaagctgaaaccactagtaaaccttcaactcctactaccgttgattctgtctcaagt 1042
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 actgaagctgaaaccactagtaaaccttcaactcctactaccgttgattctgtctcaagt 247


Query: 1043 actacaactccagacaaatcaaatgttgt 1071
|||||||||||||||||||||||||||||
Sbjct: 246 actacaactccagacaaatcaaatgttgt 218

Score = 404 bits (204), Expect(4) = 0.0
Identities = 204/204 (100%)
Strand = Plus / Minus


Query: 579 atccacaacaaatgtattttcaacaacaacctccatatccttattatggacaaccaccag 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 atccacaacaaatgtattttcaacaacaacctccatatccttattatggacaaccaccag 651


Query: 639 ttgtgccagtggttaatcaaatgattcctcaaactacagggaagaaaacattggaaatta 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 ttgtgccagtggttaatcaaatgattcctcaaactacagggaagaaaacattggaaatta 591


Query: 699 ttgatccaaaaaccaatgaaaaggtcatcattacatcaccaccaaaatcttcaacaaact 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 ttgatccaaaaaccaatgaaaaggtcatcattacatcaccaccaaaatcttcaacaaact 531


Query: 759 cgacagtcttaccaacttcaaata 782
||||||||||||||||||||||||
Sbjct: 530 cgacagtcttaccaacttcaaata 507

Score = 188 bits (95), Expect(4) = 0.0
Identities = 95/95 (100%)
Strand = Plus / Minus


Query: 1151 gaagctgaaacttcaaccaccactccagcaactgaagttcaatcaccagtggaaacaacc 1210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 gaagctgaaacttcaaccaccactccagcaactgaagttcaatcaccagtggaaacaacc 79


Query: 1211 aaggaagagcaaccaaaagaagaggttaaaccaac 1245
|||||||||||||||||||||||||||||||||||
Sbjct: 78 aaggaagagcaaccaaaagaagaggttaaaccaac 44

Score = 32.2 bits (16), Expect(4) = 0.0
Identities = 16/16 (100%)
Strand = Plus / Minus


Query: 1247 gaagtccaaccaccag 1262
||||||||||||||||
Sbjct: 43 gaagtccaaccaccag 28

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 2,643,400,716
Number of extensions: 167117772
Number of successful extensions: 16700937
Number of sequences better than 10.0: 2486
Length of query: 2635
Length of database: 95,242,211,685
Length adjustment: 25
Effective length of query: 2610
Effective length of database: 97,216,030,006
Effective search space: 253733838315660
Effective search space used: 253733838315660
X1: 11 (21.8 bits)
S2: 23 (46.1 bits)

protein update 2009. 6.29
Homology vs Protein
Query= Contig-U11246-1 (Contig-U11246-1Q) /CSM_Contig/Contig-U11246-1Q.Seq.d
(2635 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(Q23915) RecName: Full=Probable serine/threonine-protein kinase ... 44 0.030
CU640366_247(CU640366|pid:none) Podospora anserina genomic DNA c... 42 0.087
CP001291_668(CP001291|pid:none) Cyanothece sp. PCC 7424, complet... 42 0.087
AM778958_456(AM778958|pid:none) Microcystis aeruginosa PCC 7806 ... 41 0.25
BX640430_244(BX640430|pid:none) Bordetella parapertussis strain ... 41 0.25
AB035900_1(AB035900|pid:none) Raphanus sativus mRNA for vacuolar... 40 0.33
AF132883_1(AF132883|pid:none) Caenorhabditis elegans UNC-52/Perl... 40 0.43
BC067590_1(BC067590|pid:none) Danio rerio zgc:85717, mRNA (cDNA ... 40 0.43
AK069641_1(AK069641|pid:none) Oryza sativa Japonica Group cDNA c... 40 0.57
CP000673_809(CP000673|pid:none) Clostridium kluyveri DSM 555, co... 40 0.57
AY086004_1(AY086004|pid:none) Arabidopsis thaliana clone 20592 m... 39 0.97
CR940348_938(CR940348|pid:none) Theileria annulata strain Ankara... 39 0.97
BX640443_30(BX640443|pid:none) Bordetella bronchiseptica strain ... 39 1.3
CR382127_475(CR382127|pid:none) Yarrowia lipolytica strain CLIB1... 39 1.3
AF087669_1(AF087669|pid:none) Bordetella bronchiseptica TonB (to... 39 1.3
AP007171_387(AP007171|pid:none) Aspergillus oryzae RIB40 genomic... 39 1.3
AP007162_106(AP007162|pid:none) Aspergillus oryzae RIB40 genomic... 39 1.3
AF026215_8(AF026215|pid:none) Caenorhabditis elegans cosmid F09G... 39 1.3
CP000613_1753(CP000613|pid:none) Rhodospirillum centenum SW, com... 39 1.3
EF081688_1(EF081688|pid:none) Picea sitchensis clone WS02710_J02... 38 1.6
FN392321_501(FN392321|pid:none) Pichia pastoris GS115 chromosome... 38 1.6
CU928174_581(CU928174|pid:none) Zygosaccharomyces rouxii strain ... 38 1.6
AM910986_4(AM910986|pid:none) Plasmodium knowlesi strain H chrom... 38 2.2
(Q56WK6) RecName: Full=Patellin-1; &AC067754_3(AC067754|pid:non... 37 2.8
AK319076_1(AK319076|pid:none) Arabidopsis thaliana AT1G22530 mRN... 37 2.8
AE016877_462(AE016877|pid:none) Bacillus cereus ATCC 14579, comp... 37 2.8
EU627010_52(EU627010|pid:none) Soft-shelled turtle iridovirus, c... 37 3.7
EF144512_1(EF144512|pid:none) Populus trichocarpa clone PX0019_O... 37 3.7
CP001407_4621(CP001407|pid:none) Bacillus cereus 03BB102, comple... 37 3.7
CP000471_3561(CP000471|pid:none) Magnetococcus sp. MC-1, complet... 37 3.7
CP000485_4049(CP000485|pid:none) Bacillus thuringiensis str. Al ... 37 3.7
(A2QUR1) RecName: Full=Phosphatidylinositol transfer protein sfh... 37 3.7
EF144436_1(EF144436|pid:none) Populus trichocarpa clone PX0019_H... 37 4.8
AP009380_894(AP009380|pid:none) Porphyromonas gingivalis ATCC 33... 37 4.8
AE015924_1214(AE015924|pid:none) Porphyromonas gingivalis W83, c... 37 4.8
BT068500_1(BT068500|pid:none) Zea mays full-length cDNA clone ZM... 37 4.8
(P0C1J6) RecName: Full=FK506-binding protein 4; EC=5.2.... 37 4.8
FM992689_881(FM992689|pid:none) Candida dubliniensis CD36 chromo... 37 4.8
(P14922) RecName: Full=General transcriptional corepressor CYC8;... 36 6.3
DQ383287_2(DQ383287|pid:none) Pan paniscus zonadhesin variant 6 ... 36 6.3
(Q01837) RecName: Full=Protein p60; AltName: Full=Invasion-assoc... 36 6.3
S25365(S25365;S48277;S45980;S25404;S25405;A30906;S44692) CYC8 pr... 36 6.3
AF532220_1(AF532220|pid:none) Listeria ivanovii strain IMVW1656 ... 36 6.3
A38109(A38109) autolysin - Enterococcus faecalis &M58002_1(M580... 36 6.3
CP001215_4801(CP001215|pid:none) Bacillus anthracis str. CDC 684... 36 6.3
AJ271740_1(AJ271740|pid:none) Drosophila melanogaster D-Titin ge... 36 8.2
(Q9N9Y7) RecName: Full=Titin; AltName: Full=D-Titin; AltName: Fu... 36 8.2
AE017225_4540(AE017225|pid:none) Bacillus anthracis str. Sterne,... 36 8.2
CP001100_1876(CP001100|pid:none) Chloroherpeton thalassium ATCC ... 36 8.2
AF532219_1(AF532219|pid:none) Listeria ivanovii strain IMVW788 i... 36 8.2
CR940348_896(CR940348|pid:none) Theileria annulata strain Ankara... 36 8.2
BX294016_2(BX294016|pid:none) Neurospora crassa DNA linkage grou... 36 8.2
AP003771_15(AP003771|pid:none) Oryza sativa Japonica Group genom... 36 8.2
DQ792459_1(DQ792459|pid:none) Retroperitoneal fibromatosis-assoc... 36 8.2
CP001055_434(CP001055|pid:none) Elusimicrobium minutum Pei191, c... 36 8.2
CP000961_2015(CP000961|pid:none) Shewanella woodyi ATCC 51908, c... 36 8.2
Z81458_3(Z81458|pid:none) Caenorhabditis elegans Cosmid C03E10, ... 36 8.2

>(Q23915) RecName: Full=Probable serine/threonine-protein kinase kinX;
EC=2.7.11.1;
Length = 1094

Score = 43.9 bits (102), Expect = 0.030
Identities = 40/116 (34%), Positives = 50/116 (43%), Gaps = 11/116 (9%)
Frame = +2

Query: 1184 EVQSPVETTKEEQPK------EEVK---PTEVQXXXXXXXXXXXXXXXXXXXXXXXXXAK 1336
+V+ P+E K E+P EEVK PT+V+ K
Sbjct: 832 KVEEPIEEVKVEEPTKVEESIEEVKVEEPTKVEEPVEEIKPEEPTKVEESVEDVKVEDVK 891

Query: 1337 VEPIK-EEPSVVESTTTDTK-EEPIIVAEEKKQEETPVTPVTEKKEEPIVKPETPV 1498
VE +K EEP+ E + D K EEPI V E K EE K EEPI K E P+
Sbjct: 892 VEEVKAEEPTKAEESVEDVKVEEPIKVEEPVKVEEPVKVEEPVKVEEPI-KVEEPI 946

Score = 40.0 bits (92), Expect = 0.43
Identities = 37/112 (33%), Positives = 47/112 (41%), Gaps = 8/112 (7%)
Frame = +2

Query: 1187 VQSPVETTKEEQPKEEVKPTEV-----QXXXXXXXXXXXXXXXXXXXXXXXXXAKVEPIK 1351
VQ PVE K ++P + +PT+V + VE IK
Sbjct: 812 VQEPVEEVKVDEPTKVEEPTKVEEPIEEVKVEEPTKVEESIEEVKVEEPTKVEEPVEEIK 871

Query: 1352 -EEPSVVESTTTDTKEEPIIVAEEKKQEETPVTPVTE--KKEEPIVKPETPV 1498
EEP+ VE + D K E + V E K +E T E K EEPI K E PV
Sbjct: 872 PEEPTKVEESVEDVKVEDVKVEEVKAEEPTKAEESVEDVKVEEPI-KVEEPV 922

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 2,579,338,503
Number of extensions: 41508684
Number of successful extensions: 125125
Number of sequences better than 10.0: 59
Number of HSP's gapped: 123240
Number of HSP's successfully gapped: 94
Length of query: 878
Length of database: 1,040,966,779
Length adjustment: 138
Effective length of query: 740
Effective length of database: 598,775,449
Effective search space: 443093832260
Effective search space used: 443093832260
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.48 gvh: 0.34 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.46 mip: 0.02
nuc: 0.08 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

32.0 %: cytoplasmic
32.0 %: mitochondrial
32.0 %: nuclear
4.0 %: endoplasmic reticulum

>> prediction for Contig-U11246-1 is cyt

VS (DIR, S) 1
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 2
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0