Contig-U11231-1
Contig ID Contig-U11231-1
Contig update 2002.12.18
Contig sequence
>Contig-U11231-1 (Contig-U11231-1Q) /CSM_Contig/Contig-U11231-1Q.Seq.d
AAAAAGATAAAAAAGAGATAGAAGAGAGATATTCATTCCTTGTCAATATA
AAAGATGCCAATGGTAATCCAAAGGATCATCCAGATTATGATAAGAGAAC
ATTACATATACCAGCAAGTTGTCTATCGAAATTCTCACCATTTGAAAGAC
AATTTTGGGATATTAAATCAAAAAACTACGATACGGTTGTATTCTTCAAA
AAGGGTAAATTCTATGAACTCTACGAGAGTGATGCTGATATCGGTCATCA
ACAACTTCACTTGAAACTTACTGATCGTGTCAATATGCGTATGGTTGGTG
TACCAGAGATGTCCTTTAATCATTGGGCTTCAAAGTTAATTCATTTGGGT
CATAAAGTGGCCAAGGTAGATCAAATGGAGACATCAATCGGCATGGCAAA
GAGACAGAATGAAAAAGGTGGTCGTAATAAAAAAGATTCAATCATTCAGA
GAGAGTTAACTTCAATTCTTACCGCTGGTACACTTTTGGATGAACAAATG
ATCACCGATCAAACTTCAACCTATCTTATGGCCATAAAAGAGAATGAATA
CGATAAACAGTATGGCGTTTGTTTTGTCGATGTATCAATTGNNNNNNNNN
----------NNNNNNNNNNAAAANNTTTAAAAAATTTTATTTTNAAAAA
AANGGGGGGGNTTTTTTTTTTTTTTTTTTTTNAAAAAAAAAAAAAAATCA
AGTAGATCNGAATGTTTTTTTTTTTAATNCTAGCATCGATTTTTAAT

Gap gap included
Contig length 737
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 234422
End point 235143
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 2
Link to clone list U11231
List of clone(s)

est1=AHC391F,1,591
est2=AHC391Z,592,719
Translated Amino Acid sequence
KDKKEIEERYSFLVNIKDANGNPKDHPDYDKRTLHIPASCLSKFSPFERQFWDIKSKNYD
TVVFFKKGKFYELYESDADIGHQQLHLKLTDRVNMRMVGVPEMSFNHWASKLIHLGHKVA
KVDQMETSIGMAKRQNEKGGRNKKDSIIQRELTSILTAGTLLDEQMITDQTSTYLMAIKE
NEYDKQYGVCFVDVSIXXX---

---XXXKXFKKFYFXKXGGXFFFFFFXKKKKNQVDXNVFFFNXSIDF*


Translated Amino Acid sequence (All Frames)
Frame A:
kkikkr*krdihslsi*kmpmviqriiqimirehyiyqqvvyrnshhlkdnfgilnqktt
irlysskrvnsmnstrvmlisvinnft*nllivsicvwlvyqrcpliiglqs*fiwvikw
pr*ikwrhqsawqrdrmkkvvvikkiqsfres*lqflplvhfwmnk*spiklqpilwp*k
rmntinsmafvlsmyqlxxx---

---xxxxxx*kilfxkkxggffffffxkkkkkssrsecfff*x*hrfl

Frame B:
kr*krdrreifipcqykrcqw*skgssrl**enitytsklsieilti*ktilgy*ikklr
ygcilqkg*il*tlre*c*yrssttslety*scqyaygwctrdvl*slgfkvnsfgs*sg
qgrsngdinrhgkete*krws**krfnhservnfnsyrwytfg*tndhrsnfnlsyghkr
e*ir*tvwrlfcrcinxxx---

---XXXKXFKKFYFXKXGGXFFFFFFXKKKKNQVDXNVFFFNXSIDF*

Frame C:
KDKKEIEERYSFLVNIKDANGNPKDHPDYDKRTLHIPASCLSKFSPFERQFWDIKSKNYD
TVVFFKKGKFYELYESDADIGHQQLHLKLTDRVNMRMVGVPEMSFNHWASKLIHLGHKVA
KVDQMETSIGMAKRQNEKGGRNKKDSIIQRELTSILTAGTLLDEQMITDQTSTYLMAIKE
NEYDKQYGVCFVDVSIXXX---

---xxxkxlknfixkkxggxffffffxkkkkik*ixmffflxlasifn

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U11231-1 (Contig-U11231-1Q)
/CSM_Contig/Contig-U11231-1Q.Seq.d
(747 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U11231-1 (Contig-U11231-1Q) /CSM_Contig/Conti... 1172 0.0
Contig-U01910-1 (Contig-U01910-1Q) /CSM_Contig/Conti... 38 0.013
Contig-U14296-1 (Contig-U14296-1Q) /CSM_Contig/Conti... 36 0.052
Contig-U13695-1 (Contig-U13695-1Q) /CSM_Contig/Conti... 36 0.052
Contig-U11906-1 (Contig-U11906-1Q) /CSM_Contig/Conti... 36 0.052
Contig-U11129-1 (Contig-U11129-1Q) /CSM_Contig/Conti... 36 0.052
Contig-U03831-1 (Contig-U03831-1Q) /CSM_Contig/Conti... 36 0.052
Contig-U03539-1 (Contig-U03539-1Q) /CSM_Contig/Conti... 36 0.052
Contig-U08808-1 (Contig-U08808-1Q) /CSM_Contig/Conti... 30 3.2

>Contig-U11231-1 (Contig-U11231-1Q) /CSM_Contig/Contig-U11231-1Q.Seq.d
Length = 747

Score = 1172 bits (591), Expect = 0.0
Identities = 591/591 (100%)
Strand = Plus / Plus


Query: 1 aaaaagataaaaaagagatagaagagagatattcattccttgtcaatataaaagatgcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaaaagataaaaaagagatagaagagagatattcattccttgtcaatataaaagatgcca 60


Query: 61 atggtaatccaaaggatcatccagattatgataagagaacattacatataccagcaagtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atggtaatccaaaggatcatccagattatgataagagaacattacatataccagcaagtt 120


Query: 121 gtctatcgaaattctcaccatttgaaagacaattttgggatattaaatcaaaaaactacg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtctatcgaaattctcaccatttgaaagacaattttgggatattaaatcaaaaaactacg 180


Query: 181 atacggttgtattcttcaaaaagggtaaattctatgaactctacgagagtgatgctgata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atacggttgtattcttcaaaaagggtaaattctatgaactctacgagagtgatgctgata 240


Query: 241 tcggtcatcaacaacttcacttgaaacttactgatcgtgtcaatatgcgtatggttggtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tcggtcatcaacaacttcacttgaaacttactgatcgtgtcaatatgcgtatggttggtg 300


Query: 301 taccagagatgtcctttaatcattgggcttcaaagttaattcatttgggtcataaagtgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 taccagagatgtcctttaatcattgggcttcaaagttaattcatttgggtcataaagtgg 360


Query: 361 ccaaggtagatcaaatggagacatcaatcggcatggcaaagagacagaatgaaaaaggtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ccaaggtagatcaaatggagacatcaatcggcatggcaaagagacagaatgaaaaaggtg 420


Query: 421 gtcgtaataaaaaagattcaatcattcagagagagttaacttcaattcttaccgctggta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gtcgtaataaaaaagattcaatcattcagagagagttaacttcaattcttaccgctggta 480


Query: 481 cacttttggatgaacaaatgatcaccgatcaaacttcaacctatcttatggccataaaag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cacttttggatgaacaaatgatcaccgatcaaacttcaacctatcttatggccataaaag 540


Query: 541 agaatgaatacgataaacagtatggcgtttgttttgtcgatgtatcaattg 591
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 agaatgaatacgataaacagtatggcgtttgttttgtcgatgtatcaattg 591


Score = 56.0 bits (28), Expect = 6e-08
Identities = 34/34 (100%)
Strand = Plus / Plus


Query: 627 tttaaaaaattttattttnaaaaaaanggggggg 660
||||||||||||||||||||||||||||||||||
Sbjct: 627 tttaaaaaattttattttnaaaaaaanggggggg 660


Score = 38.2 bits (19), Expect = 0.013
Identities = 22/22 (100%)
Strand = Plus / Plus


Query: 726 aatnctagcatcgatttttaat 747
||||||||||||||||||||||
Sbjct: 726 aatnctagcatcgatttttaat 747


>Contig-U01910-1 (Contig-U01910-1Q) /CSM_Contig/Contig-U01910-1Q.Seq.d
Length = 1041

Score = 38.2 bits (19), Expect = 0.013
Identities = 24/26 (92%)
Strand = Plus / Plus


Query: 627 tttaaaaaattttattttnaaaaaaa 652
|||||||||||||||| | |||||||
Sbjct: 574 tttaaaaaattttattataaaaaaaa 599


>Contig-U14296-1 (Contig-U14296-1Q) /CSM_Contig/Contig-U14296-1Q.Seq.d
Length = 223

Score = 36.2 bits (18), Expect = 0.052
Identities = 23/25 (92%)
Strand = Plus / Plus


Query: 628 ttaaaaaattttattttnaaaaaaa 652
|||||||||||| |||| |||||||
Sbjct: 113 ttaaaaaatttttttttaaaaaaaa 137


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7318
Number of Sequences: 6905
Number of extensions: 7318
Number of successful extensions: 907
Number of sequences better than 10.0: 105
length of query: 747
length of database: 5,674,871
effective HSP length: 16
effective length of query: 731
effective length of database: 5,564,391
effective search space: 4067569821
effective search space used: 4067569821
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.23
Homology vs DNA
Query= Contig-U11231-1 (Contig-U11231-1Q) /CSM_Contig/Contig-U11231-1Q.Seq.d
(747 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ331543) Dictyostelium discoideum cDNA clone:dda35f23, 5' ... 1170 0.0 1
(ET438293) fcg2x.pk001.d6 C. graminicola genomic sequence Gl... 58 9e-13 2
(ET502633) fcg2x.pk547.d9.f C. graminicola genomic sequence ... 58 9e-13 2
(ET511092) fcg2x.pk602.c5 C. graminicola genomic sequence Gl... 58 9e-13 2
(BJ349229) Dictyostelium discoideum cDNA clone:dda35f23, 3' ... 56 2e-12 3
(ET625750) fcg3x.309050d05.f C. graminicola genomic sequence... 58 5e-11 2
(ET438282) fcg2x.pk001.d6a C. graminicola genomic sequence G... 48 7e-10 2
(ET480975) fcg2x.pk377.c6 C. graminicola genomic sequence Gl... 58 4e-08 2
(ET508705) fcg2x.pk588.h2 C. graminicola genomic sequence Gl... 58 4e-08 2
(EA378687) Sequence 27510 from patent US 7314974. 60 1e-04 1
(AG321539) Mus musculus molossinus DNA, clone:MSMg01-107P08.... 50 0.010 2
(ED794309) GC5A668TF Coffea arabica WGS library, 0.8-2KB Cof... 50 0.12 1
(DV071595) VP01_09_P18.x1 FH VP01 Mus musculus cDNA clone VP... 50 0.12 1
(ET512052) fcg2x.pk608.e8a C. graminicola genomic sequence G... 48 0.48 1
(BZ556164) pacs1-60_5543.y2 pacs1-60 Pseudomonas aeruginosa ... 48 0.48 1
(CO097162) GR__Ea20N24.f GR__Ea Gossypium raimondii cDNA clo... 48 0.48 1
(AP008212) Oryza sativa (japonica cultivar-group) genomic DN... 36 0.70 2
(AP003019) Oryza sativa Japonica Group genomic DNA, chromoso... 36 1.0 2
(CL841594) OR_CBa0069O08.r OR_CBa Oryza rufipogon genomic cl... 36 1.3 2
(CL844927) OR_CBa0060G19.r OR_CBa Oryza rufipogon genomic cl... 36 1.3 2
(AX345380) Sequence 451 from Patent WO0200928. 46 1.9 1
(AL021481) Caenorhabditis elegans YAC Y43F4B. 46 1.9 1
(AC011301) Homo sapiens BAC clone RP11-299I20 from 2, comple... 46 1.9 1
(AC015927) Homo sapiens chromosome 9 clone RP11-174I23 map 9... 46 1.9 1
(BH457310) BOGTN29TF BOGT Brassica oleracea genomic clone BO... 46 1.9 1
(ED934958) OA_CBa0139C16.r OA_CBa Oryza australiensis genomi... 46 1.9 1
(ED914696) OA_CBa0110L03.f OA_CBa Oryza australiensis genomi... 46 1.9 1
(DU957902) 224958 Tomato MboI BAC Library Solanum lycopersic... 46 1.9 1
(CW642385) OA_ABa0179I01.r OA_ABa Oryza australiensis genomi... 46 1.9 1
(CW616546) OA_ABa0160L24.r OA_ABa Oryza australiensis genomi... 46 1.9 1
(CW613535) OA_ABa0156C08.f OA_ABa Oryza australiensis genomi... 46 1.9 1
(CW565731) OA_ABa0090F04.r OA_ABa Oryza australiensis genomi... 46 1.9 1
(CW565325) OA_ABa0089L18.r OA_ABa Oryza australiensis genomi... 46 1.9 1
(CW555053) OA_ABa0075B04.r OA_ABa Oryza australiensis genomi... 46 1.9 1
(B45828) HS-1062-A2-G11-MF.abi CIT Human Genomic Sperm Libra... 46 1.9 1
(BH949924) odh88b05.b1 B.oleracea002 Brassica oleracea genom... 46 1.9 1
(ES813463) UFL_307_84 Cotton fiber 0-10 day post anthesis Go... 46 1.9 1
(DW347642) PP_LEc0023D08f Peach shoot Prunus persica cDNA cl... 46 1.9 1
(DT960898) CFW171-G03.y1d-s SHGC-CFW Gasterosteus aculeatus ... 46 1.9 1
(AI624516) ts17g01.x1 NCI_CGAP_Pan1 Homo sapiens cDNA clone ... 46 1.9 1
(AW085311) xe08f04.x1 Soares_NFL_T_GBC_S1 Homo sapiens cDNA ... 46 1.9 1
(AC005532) Homo sapiens PAC clone RP4-733B9 from 7, complete... 34 2.8 5
(CT737303) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 3.0 3
(CU302247) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 3.3 2
(AC115926) Mus musculus clone RP24-528C19, WORKING DRAFT SEQ... 36 3.5 4
(AG320506) Mus musculus molossinus DNA, clone:MSMg01-106G14.... 38 3.9 3
(EJ518141) 1092955113525 Global-Ocean-Sampling_GS-29-01-01-1... 40 4.1 2
(AC100722) Mus musculus clone RP24-194D16, WORKING DRAFT SEQ... 36 4.5 4
(DV614890) EST1217886 Glossina morsitans morsitans Fat body ... 34 4.6 2
(CF813946) EST691328 Coccidioides posadasii saprobic phase c... 32 4.8 2
(AL844901) Mouse DNA sequence from clone RP23-158F12 on chro... 36 5.5 4
(EK015560) 1092955229665 Global-Ocean-Sampling_GS-31-01-01-1... 42 5.6 2
(AC087254) Danio rerio clone 91J1, complete sequence. 40 5.8 4
(CU013535) Zebrafish DNA sequence from clone CH211-61D13 in ... 44 6.6 2
(CR735126) Zebrafish DNA sequence from clone DKEY-208L10 in ... 44 7.4 1
(AP008207) Oryza sativa (japonica cultivar-group) genomic DN... 44 7.4 1
(AP003725) Oryza sativa Japonica Group genomic DNA, chromoso... 44 7.4 1
(AP002910) Oryza sativa Japonica Group genomic DNA, chromoso... 44 7.4 1
(AP002902) Oryza sativa Japonica Group genomic DNA, chromoso... 44 7.4 1
(AP002900) Oryza sativa Japonica Group genomic DNA, chromoso... 44 7.4 1
(EA696232) Sequence 75111 from patent US 7365185. 44 7.4 1
(EA691871) Sequence 70750 from patent US 7365185. 44 7.4 1
(AL117207) Caenorhabditis elegans YAC Y60A3A. 44 7.4 1
(AC093853) Homo sapiens BAC clone RP11-502M1 from 4, complet... 44 7.4 1
(AC137187) Rattus norvegicus clone CH230-unknown, *** SEQUEN... 44 7.4 1
(AC116041) Papio hamadryas clone RP41-70C10, *** SEQUENCING ... 44 7.4 1
(AC107169) Rattus norvegicus clone CH230-69H23, *** SEQUENCI... 44 7.4 1
(CU407293) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 7.4 1
(AL020985) Caenorhabditis elegans DNA *** SEQUENCING IN PROG... 44 7.4 1
(AC179072) Strongylocentrotus purpuratus clone R3-4009F23, W... 44 7.4 1
(ET750665) CHO_OF856xo02f1.ab1 CHO_OF Nicotiana tabacum geno... 44 7.4 1
(ER364060) 1093018942773 Global-Ocean-Sampling_GS-34-01-01-1... 44 7.4 1
(EJ710979) 1092956074984 Global-Ocean-Sampling_GS-30-02-01-1... 44 7.4 1
(EJ683319) 1092955151887 Global-Ocean-Sampling_GS-30-02-01-1... 44 7.4 1
(DX522257) GH_MBb0073A03r GH_MBb Gossypium hirsutum genomic ... 44 7.4 1
(DU918835) 338115 Tomato EcoRI BAC Library Solanum lycopersi... 44 7.4 1
(CU138006) Equus caballus GSS, BAC clone CH241-70F16, T7 end... 44 7.4 1
(CU026946) Equus caballus GSS, BAC clone CH241-119N10, SP6 e... 44 7.4 1
(CL575224) OB__Ba0023F09.r OB__Ba Oryza brachyantha genomic ... 44 7.4 1
(CL574806) OB__Ba0022D02.r OB__Ba Oryza brachyantha genomic ... 44 7.4 1
(B21644) T13K19-T7 TAMU Arabidopsis thaliana genomic clone T... 44 7.4 1
(AG311212) Mus musculus molossinus DNA, clone:MSMg01-093O06.... 44 7.4 1
(EL593262) CaHa490 Chickpea Insect-Induced Library Cicer ari... 44 7.4 1
(EG443673) AYAJX84TF pooled cDNA populations Arabidopsis tha... 44 7.4 1
(EE643857) CHEM3700.b1_G14.ab1 CHE(LMS) serpentine sunflower... 44 7.4 1
(DY267572) IC0AAA21DD02RM1 CitNFL Citrus clementina cDNA 5',... 44 7.4 1
(DN808979) 76871501 Sea Urchin primary mesenchyme cell cDNA ... 44 7.4 1
(DN570186) 94034386 Sea Urchin primary mesenchyme cell cDNA ... 44 7.4 1
(AA868624) ak53c05.s1 Soares_testis_NHT Homo sapiens cDNA cl... 44 7.4 1
(FC857935) CAMMEP331b06 CAMME Biomphalaria glabrata cDNA clo... 44 7.4 1
(CP000879) Petrotoga mobilis SJ95, complete genome. 44 7.4 1

>(BJ331543) Dictyostelium discoideum cDNA clone:dda35f23, 5' end,
single read.
Length = 591

Score = 1170 bits (590), Expect = 0.0
Identities = 590/590 (100%)
Strand = Plus / Plus


Query: 1 aaaaagataaaaaagagatagaagagagatattcattccttgtcaatataaaagatgcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaaaagataaaaaagagatagaagagagatattcattccttgtcaatataaaagatgcca 60


Query: 61 atggtaatccaaaggatcatccagattatgataagagaacattacatataccagcaagtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atggtaatccaaaggatcatccagattatgataagagaacattacatataccagcaagtt 120


Query: 121 gtctatcgaaattctcaccatttgaaagacaattttgggatattaaatcaaaaaactacg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtctatcgaaattctcaccatttgaaagacaattttgggatattaaatcaaaaaactacg 180


Query: 181 atacggttgtattcttcaaaaagggtaaattctatgaactctacgagagtgatgctgata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atacggttgtattcttcaaaaagggtaaattctatgaactctacgagagtgatgctgata 240


Query: 241 tcggtcatcaacaacttcacttgaaacttactgatcgtgtcaatatgcgtatggttggtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tcggtcatcaacaacttcacttgaaacttactgatcgtgtcaatatgcgtatggttggtg 300


Query: 301 taccagagatgtcctttaatcattgggcttcaaagttaattcatttgggtcataaagtgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 taccagagatgtcctttaatcattgggcttcaaagttaattcatttgggtcataaagtgg 360


Query: 361 ccaaggtagatcaaatggagacatcaatcggcatggcaaagagacagaatgaaaaaggtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ccaaggtagatcaaatggagacatcaatcggcatggcaaagagacagaatgaaaaaggtg 420


Query: 421 gtcgtaataaaaaagattcaatcattcagagagagttaacttcaattcttaccgctggta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gtcgtaataaaaaagattcaatcattcagagagagttaacttcaattcttaccgctggta 480


Query: 481 cacttttggatgaacaaatgatcaccgatcaaacttcaacctatcttatggccataaaag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cacttttggatgaacaaatgatcaccgatcaaacttcaacctatcttatggccataaaag 540


Query: 541 agaatgaatacgataaacagtatggcgtttgttttgtcgatgtatcaatt 590
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 agaatgaatacgataaacagtatggcgtttgttttgtcgatgtatcaatt 590

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 749,037,760
Number of extensions: 42171266
Number of successful extensions: 3328825
Number of sequences better than 10.0: 93
Length of query: 747
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 723
Effective length of database: 97,308,875,965
Effective search space: 70354317322695
Effective search space used: 70354317322695
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.29
Homology vs Protein
Query= Contig-U11231-1 (Contig-U11231-1Q) /CSM_Contig/Contig-U11231-1Q.Seq.d
(747 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(Q55GU9) RecName: Full=DNA mismatch repair protein Msh6; 402 e-111
AM270074_6(AM270074|pid:none) Aspergillus niger contig An04c0130... 232 1e-59
(O74502) RecName: Full=DNA mismatch repair protein msh6; &AF207... 218 2e-55
CR382132_1100(CR382132|pid:none) Yarrowia lipolytica strain CLIB... 207 2e-52
CU633866_79(CU633866|pid:none) Podospora anserina genomic DNA ch... 203 5e-51
AE017351_256(AE017351|pid:none) Cryptococcus neoformans var. neo... 202 1e-50
CU928174_493(CU928174|pid:none) Zygosaccharomyces rouxii strain ... 190 5e-47
CR382123_767(CR382123|pid:none) Kluyveromyces lactis strain NRRL... 188 2e-46
AL590449_70(AL590449|pid:none) chromosome X of strain GB-M1 of E... 172 1e-41
(Q9VUM0) RecName: Full=Probable DNA mismatch repair protein Msh6... 133 5e-30
(P52701) RecName: Full=DNA mismatch repair protein Msh6; AltName... 131 2e-29
(O04716) RecName: Full=DNA mismatch repair protein Msh6-1; ... 127 4e-28
(Q9SMV7) RecName: Full=DNA mismatch repair protein Msh6-2; ... 127 5e-28
AX004278_1(AX004278|pid:none) Sequence 30 from Patent WO9919492. 127 5e-28
CT005272_201(CT005272|pid:none) Leishmania major strain Friedlin... 127 5e-28
AF193018_1(AF193018|pid:none) Arabidopsis thaliana MutS homolog ... 127 5e-28
AF350880_1(AF350880|pid:none) Trypanosoma brucei putative mismat... 126 6e-28
AM502254_449(AM502254|pid:none) Leishmania infantum chromosome 36. 125 1e-27
BC044350_1(BC044350|pid:none) Danio rerio mutS homolog 6 (E. col... 120 4e-26
AF412834_1(AF412834|pid:none) Danio rerio mismatch repair protei... 120 4e-26
CU468002_1(CU468002|pid:none) Zebrafish DNA sequence from clone ... 120 4e-26
FN357394_20(FN357394|pid:none) Schistosoma mansoni genome sequen... 119 8e-26
FN357394_21(FN357394|pid:none) Schistosoma mansoni genome sequen... 119 8e-26
BC089270_1(BC089270|pid:none) Xenopus laevis hypothetical protei... 119 8e-26
AP005707_5(AP005707|pid:none) Oryza sativa Japonica Group genomi... 119 1e-25
AM456916_3(AM456916|pid:none) Vitis vinifera contig VV78X171121.... 113 5e-24
AP003047_2(AP003047|pid:none) Oryza sativa Japonica Group genomi... 113 7e-24
AJ238787_1(AJ238787|pid:none) Zea mays mRNA for MUS2 protein, pa... 110 5e-23
AJ238786_1(AJ238786|pid:none) Zea mays mus2 gene, exons 1-16. 110 5e-23
CP000586_255(CP000586|pid:none) Ostreococcus lucimarinus CCE9901... 107 3e-22
AC024791_4(AC024791|pid:none) Caenorhabditis elegans cosmid Y47G... 102 1e-20
EF015609_1(EF015609|pid:none) Tetrahymena thermophila putative m... 97 7e-19
(A6LLR1) RecName: Full=DNA mismatch repair protein mutS; &CP000... 94 6e-18
(B2KB17) RecName: Full=DNA mismatch repair protein mutS; &CP001... 91 4e-17
(Q12VC9) RecName: Full=DNA mismatch repair protein mutS; &CP000... 90 6e-17
CP001357_1111(CP001357|pid:none) Brachyspira hyodysenteriae WA1,... 90 6e-17
CR940347_982(CR940347|pid:none) Theileria annulata strain Ankara... 89 1e-16
(Q0SM54) RecName: Full=DNA mismatch repair protein mutS; &CP000... 87 4e-16
CP000254_3127(CP000254|pid:none) Methanospirillum hungatei JF-1,... 87 4e-16
CP000976_767(CP000976|pid:none) Borrelia duttonii Ly, complete g... 86 1e-15
(Q0AYB5) RecName: Full=DNA mismatch repair protein mutS; &CP000... 86 1e-15
(B7J0P3) RecName: Full=DNA mismatch repair protein mutS; &(O517... 85 2e-15
(A5ILG0) RecName: Full=DNA mismatch repair protein mutS; &CP000... 85 2e-15
(Q07V29) RecName: Full=DNA mismatch repair protein mutS; &CP000... 85 2e-15
(A6TR79) RecName: Full=DNA mismatch repair protein mutS; &CP000... 85 2e-15
(Q68X73) RecName: Full=DNA mismatch repair protein mutS; &AE017... 85 2e-15
AP008215_589(AP008215|pid:none) Oryza sativa (japonica cultivar-... 85 3e-15
CP001196_121(CP001196|pid:none) Oligotropha carboxidovorans OM5 ... 84 4e-15
(A1UU95) RecName: Full=DNA mismatch repair protein mutS; &CP000... 84 4e-15
(A8GMX2) RecName: Full=DNA mismatch repair protein mutS; &CP000... 83 8e-15
(P61673) RecName: Full=DNA mismatch repair protein mutS; 83 8e-15
(A8EZG1) RecName: Full=DNA mismatch repair protein mutS; &CP000... 83 8e-15
(A6U5G0) RecName: Full=DNA mismatch repair protein mutS; &CP000... 83 1e-14
CP000993_755(CP000993|pid:none) Borrelia recurrentis A1, complet... 83 1e-14
(A8I275) RecName: Full=DNA mismatch repair protein mutS; &AP009... 83 1e-14
CP001098_1154(CP001098|pid:none) Halothermothrix orenii H 168, c... 83 1e-14
CP000030_279(CP000030|pid:none) Anaplasma marginale str. St. Mar... 82 1e-14
(Q8TTB4) RecName: Full=DNA mismatch repair protein mutS; &AE010... 82 1e-14
CP001079_272(CP001079|pid:none) Anaplasma marginale str. Florida... 82 1e-14
(P74926) RecName: Full=DNA mismatch repair protein mutS; &AE000... 82 2e-14
CP000969_1099(CP000969|pid:none) Thermotoga sp. RQ2, complete ge... 82 2e-14
CP000924_1155(CP000924|pid:none) Thermoanaerobacter pseudethanol... 82 2e-14
(A7HMG4) RecName: Full=DNA mismatch repair protein mutS; &CP000... 82 2e-14
(Q13ED0) RecName: Full=DNA mismatch repair protein mutS; &CP000... 82 2e-14
(Q8RA71) RecName: Full=DNA mismatch repair protein mutS; &AE008... 81 3e-14
CP001096_510(CP001096|pid:none) Rhodopseudomonas palustris TIE-1... 81 4e-14
(Q21CE8) RecName: Full=DNA mismatch repair protein mutS; 81 4e-14
AE017196_167(AE017196|pid:none) Wolbachia endosymbiont of Drosop... 80 5e-14
CP001348_1660(CP001348|pid:none) Clostridium cellulolyticum H10,... 80 5e-14
CP000943_6202(CP000943|pid:none) Methylobacterium sp. 4-46, comp... 80 5e-14
CP000908_4222(CP000908|pid:none) Methylobacterium extorquens PA1... 80 5e-14
(Q92IL9) RecName: Full=DNA mismatch repair protein mutS; &A9775... 80 7e-14
CP001612_324(CP001612|pid:none) Rickettsia africae ESF-5, comple... 80 7e-14
(Q4UM86) RecName: Full=DNA mismatch repair protein mutS; &CP000... 80 7e-14
(Q5WFY3) RecName: Full=DNA mismatch repair protein mutS; &AP006... 80 9e-14
AM999887_388(AM999887|pid:none) Wolbachia endosymbiont of Culex ... 80 9e-14
(A5FQC0) RecName: Full=DNA mismatch repair protein mutS; &CP000... 79 1e-13
(A8F164) RecName: Full=DNA mismatch repair protein mutS; &CP000... 79 1e-13
(A1AMW9) RecName: Full=DNA mismatch repair protein mutS; &CP000... 79 1e-13
(A8GRI6) RecName: Full=DNA mismatch repair protein mutS; &CP000... 79 1e-13
(P56883) RecName: Full=DNA mismatch repair protein mutS; &AL591... 79 1e-13
(Q8PWA7) RecName: Full=DNA mismatch repair protein mutS; &AE008... 79 1e-13
(Q8YES6) RecName: Full=DNA mismatch repair protein mutS; 79 1e-13
(Q2GJL7) RecName: Full=DNA mismatch repair protein mutS; &CP000... 79 1e-13
(Q3Z767) RecName: Full=DNA mismatch repair protein mutS; &CP000... 79 1e-13
(Q03VV4) RecName: Full=DNA mismatch repair protein mutS; &CP000... 79 1e-13
CP001488_135(CP001488|pid:none) Brucella melitensis ATCC 23457 c... 79 1e-13
AC3477(AC3477) DNA mismatch repair protein mutS [imported] - Bru... 79 1e-13
CP001029_4699(CP001029|pid:none) Methylobacterium populi BJ001, ... 79 1e-13
(Q3A4F1) RecName: Full=DNA mismatch repair protein mutS; &CP000... 79 2e-13
(A6WV86) RecName: Full=DNA mismatch repair protein mutS; &CP000... 79 2e-13
CP001001_605(CP001001|pid:none) Methylobacterium radiotolerans J... 78 3e-13
AP009484_890(AP009484|pid:none) Macrococcus caseolyticus JCSC540... 78 3e-13
CP000930_2497(CP000930|pid:none) Heliobacterium modesticaldum Ic... 78 3e-13
(Q89VX1) RecName: Full=DNA mismatch repair protein mutS; &BA000... 78 3e-13
CP001393_1432(CP001393|pid:none) Anaerocellum thermophilum DSM 6... 78 3e-13
(Q1QQJ4) RecName: Full=DNA mismatch repair protein mutS; &CP000... 78 3e-13
CP000090_1107(CP000090|pid:none) Ralstonia eutropha JMP134 chrom... 78 3e-13
CP001227_536(CP001227|pid:none) Rickettsia peacockii str. Rustic... 77 4e-13
CP000780_1210(CP000780|pid:none) Candidatus Methanoregula boonei... 77 4e-13
(Q0KCC0) RecName: Full=DNA mismatch repair protein mutS; &AM260... 77 4e-13
(A8GX86) RecName: Full=DNA mismatch repair protein mutS; &CP000... 77 6e-13
(Q30ZX3) RecName: Full=DNA mismatch repair protein mutS; &CP000... 77 6e-13
(Q8RFK2) RecName: Full=DNA mismatch repair protein mutS; &AE009... 77 6e-13
(Q5FLX5) RecName: Full=DNA mismatch repair protein mutS; &CP000... 77 7e-13
(Q2RJG2) RecName: Full=DNA mismatch repair protein mutS; &CP000... 77 7e-13
AE017321_254(AE017321|pid:none) Wolbachia endosymbiont strain TR... 77 7e-13
CU062463_8(CU062463|pid:none) Onchocerca Wolbachia Sequence Frag... 77 7e-13
(Q5FHE8) RecName: Full=DNA mismatch repair protein mutS; &CR925... 76 1e-12
CP000356_2770(CP000356|pid:none) Sphingopyxis alaskensis RB2256,... 76 1e-12
CP000878_1772(CP000878|pid:none) Prochlorococcus marinus str. MI... 76 1e-12
CP001280_2272(CP001280|pid:none) Methylocella silvestris BL2, co... 76 1e-12
(Q46CE2) RecName: Full=DNA mismatch repair protein mutS; &CP000... 76 1e-12
(Q1MMA5) RecName: Full=DNA mismatch repair protein mutS; &AM236... 76 1e-12
(Q5HBQ7) RecName: Full=DNA mismatch repair protein mutS; &CR767... 76 1e-12
(A0Q0M6) RecName: Full=DNA mismatch repair protein mutS; &CP000... 76 1e-12
(Q03EQ7) RecName: Full=DNA mismatch repair protein mutS; &CP000... 76 1e-12
(Q2KD76) RecName: Full=DNA mismatch repair protein mutS; &CP000... 76 1e-12
CU466930_904(CU466930|pid:none) Candidatus Cloacamonas acidamino... 76 1e-12
(A4XL47) RecName: Full=DNA mismatch repair protein mutS; &CP000... 76 1e-12
CP001390_2732(CP001390|pid:none) Geobacter sp. FRC-32, complete ... 76 1e-12
AY172515_2(AY172515|pid:none) Rhizobium etli NAPH dependent oxid... 76 1e-12
CP001074_420(CP001074|pid:none) Rhizobium etli CIAT 652, complet... 75 2e-12
CP000628_483(CP000628|pid:none) Agrobacterium radiobacter K84 ch... 75 2e-12
(Q88UZ7) RecName: Full=DNA mismatch repair protein mutS; &AL935... 75 2e-12
(Q8CXG6) RecName: Full=DNA mismatch repair protein mutS; &BA000... 75 2e-12
(Q045Q5) RecName: Full=DNA mismatch repair protein mutS; &CP000... 75 2e-12
(Q3KKQ0) RecName: Full=DNA mismatch repair protein mutS; &CP000... 75 2e-12
(A9ILT1) RecName: Full=DNA mismatch repair protein mutS; &AM260... 75 2e-12
AM884176_161(AM884176|pid:none) Chlamydia trachomatis strain L2/... 75 2e-12
FM872307_807(FM872307|pid:none) Chlamydia trachomatis B/TZ1A828/... 75 2e-12
(Q5NL79) RecName: Full=DNA mismatch repair protein mutS; &AE008... 75 2e-12
CP001336_2691(CP001336|pid:none) Desulfitobacterium hafniense DC... 75 3e-12
CP000922_1502(CP000922|pid:none) Anoxybacillus flavithermus WK1,... 75 3e-12
AF091119_1(AF091119|pid:none) Lactococcus lactis DNA mismatch re... 75 3e-12
CP001275_1061(CP001275|pid:none) Thermomicrobium roseum DSM 5159... 75 3e-12
(Q9CDK9) RecName: Full=DNA mismatch repair protein mutS; &AE005... 75 3e-12
CP000237_321(CP000237|pid:none) Neorickettsia sennetsu strain Mi... 74 4e-12
CP000853_1527(CP000853|pid:none) Alkaliphilus oremlandii OhILAs,... 74 4e-12
(A4W4J7) RecName: Full=DNA mismatch repair protein mutS; &CP000... 74 5e-12
(Q5L7B7) RecName: Full=DNA mismatch repair protein mutS; &CR626... 74 5e-12
FM204884_1891(FM204884|pid:none) Streptococcus equi subsp. zooep... 74 5e-12
(Q1MRT4) RecName: Full=DNA mismatch repair protein mutS; &AM180... 74 6e-12
FM204883_2064(FM204883|pid:none) Streptococcus equi subsp. equi ... 74 6e-12
CP000770_68(CP000770|pid:none) Candidatus Sulcia muelleri GWSS, ... 74 6e-12
AM946015_1742(AM946015|pid:none) Streptococcus uberis 0140J comp... 74 6e-12
CP001016_1245(CP001016|pid:none) Beijerinckia indica subsp. indi... 74 6e-12
CP001108_1551(CP001108|pid:none) Prosthecochloris aestuarii DSM ... 74 6e-12
(Q255T1) RecName: Full=DNA mismatch repair protein mutS; &AP006... 73 8e-12
(A2RP10) RecName: Full=DNA mismatch repair protein mutS; &AM406... 73 8e-12
CP000301_359(CP000301|pid:none) Rhodopseudomonas palustris BisB1... 73 8e-12
CP000572_2580(CP000572|pid:none) Burkholderia pseudomallei 1106a... 73 8e-12
(Q02VS3) RecName: Full=DNA mismatch repair protein mutS; &CP000... 73 8e-12
(A7HZ64) RecName: Full=DNA mismatch repair protein mutS; &CP000... 73 8e-12
CP000526_2129(CP000526|pid:none) Burkholderia mallei SAVP1 chrom... 73 8e-12
CP001503_2300(CP001503|pid:none) Burkholderia glumae BGR1 chromo... 73 8e-12
(A8FDH3) RecName: Full=DNA mismatch repair protein mutS; &CP000... 73 8e-12
CU459003_3291(CU459003|pid:none) Magnetospirillum gryphiswaldens... 73 8e-12
(A2SJQ7) RecName: Full=DNA mismatch repair protein mutS; &CP000... 73 1e-11
(Q1JEH0) RecName: Full=DNA mismatch repair protein mutS; &CP000... 73 1e-11
(Q1J489) RecName: Full=DNA mismatch repair protein mutS; &CP000... 73 1e-11
(Q9PLD0) RecName: Full=DNA mismatch repair protein mutS; &AE002... 73 1e-11
CP001408_2699(CP001408|pid:none) Burkholderia pseudomallei MSHR3... 73 1e-11
(Q67NK1) RecName: Full=DNA mismatch repair protein mutS; &AP006... 73 1e-11
(Q3BVY0) RecName: Full=DNA mismatch repair protein mutS; &AM039... 73 1e-11
(A5GQ22) RecName: Full=DNA mismatch repair protein mutS; &CT978... 73 1e-11
(A6LG92) RecName: Full=DNA mismatch repair protein mutS; &CP000... 73 1e-11
(Q1WT15) RecName: Full=DNA mismatch repair protein mutS; &CP000... 73 1e-11
CP001097_1643(CP001097|pid:none) Chlorobium limicola DSM 245, co... 73 1e-11
(A5N8I5) RecName: Full=DNA mismatch repair protein mutS; &AP009... 73 1e-11
(A0AIK5) RecName: Full=DNA mismatch repair protein mutS; &AM263... 72 1e-11
(A5VA00) RecName: Full=DNA mismatch repair protein mutS; &CP000... 72 1e-11
(A4IMI0) RecName: Full=DNA mismatch repair protein mutS; &CP000... 72 1e-11
(Q8DWW1) RecName: Full=DNA mismatch repair protein mutS; &(Q8E2... 72 1e-11
FM242711_1386(FM242711|pid:none) Listeria monocytogenes Clip8145... 72 1e-11
(Q8Y789) RecName: Full=DNA mismatch repair protein mutS; &AC125... 72 1e-11
(Q9PCR2) RecName: Full=DNA mismatch repair protein mutS; 72 1e-11
CP000941_1125(CP000941|pid:none) Xylella fastidiosa M12, complet... 72 1e-11
(Q1J9C1) RecName: Full=DNA mismatch repair protein mutS; &(Q1JJ... 72 1e-11
(Q9Z6W5) RecName: Full=DNA mismatch repair protein mutS; &AE002... 72 1e-11
(A1V5I2) RecName: Full=DNA mismatch repair protein mutS; &(A2SA... 72 1e-11
(Q8K5J5) RecName: Full=DNA mismatch repair protein mutS; &AE014... 72 1e-11
(Q92BV3) RecName: Full=DNA mismatch repair protein mutS; &AG161... 72 1e-11
CP000613_2835(CP000613|pid:none) Rhodospirillum centenum SW, com... 72 1e-11
(Q48QT6) RecName: Full=DNA mismatch repair protein mutS; &CP000... 72 1e-11
(Q99XL8) RecName: Full=DNA mismatch repair protein mutS; &AE004... 72 1e-11
(Q3JYM3) RecName: Full=DNA mismatch repair protein mutS; &CP000... 72 1e-11
(A3NWZ4) RecName: Full=DNA mismatch repair protein mutS; 72 1e-11
CP001175_1147(CP001175|pid:none) Listeria monocytogenes HCC23, c... 72 1e-11
(Q63SR9) RecName: Full=DNA mismatch repair protein mutS; &BX571... 72 1e-11
(Q04RT2) RecName: Full=DNA mismatch repair protein mutS; &(Q051... 72 2e-11
CP001131_2141(CP001131|pid:none) Anaeromyxobacter sp. K, complet... 72 2e-11
CU633749_1161(CU633749|pid:none) Cupriavidus taiwanensis str. LM... 72 2e-11
AP009385_2024(AP009385|pid:none) Burkholderia multivorans ATCC 1... 72 2e-11
(A7HC64) RecName: Full=DNA mismatch repair protein mutS; &CP000... 72 2e-11
CP000633_325(CP000633|pid:none) Agrobacterium vitis S4 chromosom... 72 2e-11
(Q5M1Z0) RecName: Full=DNA mismatch repair protein mutS; &CP000... 72 2e-11
(Q03MY4) RecName: Full=DNA mismatch repair protein mutS; &CP000... 72 2e-11
(Q13X51) RecName: Full=DNA mismatch repair protein mutS; 72 2e-11
CP001129_1820(CP001129|pid:none) Streptococcus equi subsp. zooep... 72 2e-11
(A0K8L2) RecName: Full=DNA mismatch repair protein mutS; &CP000... 72 2e-11
(Q5L0E5) RecName: Full=DNA mismatch repair protein mutS; &BA000... 72 2e-11
(Q0BDU3) RecName: Full=DNA mismatch repair protein mutS; &CP000... 72 2e-11
(Q6MBV4) RecName: Full=DNA mismatch repair protein mutS; &BX908... 72 2e-11
(Q2RNG0) RecName: Full=DNA mismatch repair protein mutS; &CP000... 72 2e-11
(Q5H2C5) RecName: Full=DNA mismatch repair protein mutS; &AE013... 72 2e-11
CP000958_2087(CP000958|pid:none) Burkholderia cenocepacia MC0-3 ... 72 2e-11
CP001025_1976(CP001025|pid:none) Burkholderia ambifaria MC40-6 c... 72 2e-11
(Q1BHQ1) RecName: Full=DNA mismatch repair protein mutS; &CP000... 72 2e-11
(Q8PMX2) RecName: Full=DNA mismatch repair protein mutS; &AE008... 71 3e-11
DQ991012_1(DQ991012|pid:none) Staphylococcus epidermidis MutS (m... 71 3e-11
(Q64MG7) RecName: Full=DNA mismatch repair protein mutS; &AP006... 71 3e-11
CP001124_1736(CP001124|pid:none) Geobacter bemidjiensis Bem, com... 71 3e-11
BA000022_1243(BA000022|pid:none) Synechocystis sp. PCC 6803 DNA,... 71 3e-11
(P27345) RecName: Full=DNA mismatch repair protein mutS; &A5329... 71 3e-11
(A1BHN5) RecName: Full=DNA mismatch repair protein mutS; &CP000... 71 3e-11
(Q1LTQ0) RecName: Full=DNA mismatch repair protein mutS; &CP000... 71 3e-11
(A7GE45) RecName: Full=DNA mismatch repair protein mutS; &CP000... 71 4e-11
AM980462_1(AM980462|pid:none) Staphylococcus aureus subsp. aureu... 71 4e-11
(Q87CI8) RecName: Full=DNA mismatch repair protein mutS; &AE009... 71 4e-11
AJ564052_1(AJ564052|pid:none) Staphylococcus aureus partial mutS... 71 4e-11
CP000786_813(CP000786|pid:none) Leptospira biflexa serovar Patoc... 71 4e-11
Y18631_1(Y18631|pid:none) Staphylococcus aureus mutS gene, parti... 71 4e-11
(Q49X88) RecName: Full=DNA mismatch repair protein mutS; &AP008... 71 4e-11
AM980469_1(AM980469|pid:none) Staphylococcus aureus subsp. aureu... 71 4e-11
(Q8A334) RecName: Full=DNA mismatch repair protein mutS; &AE015... 71 4e-11
CP001011_1116(CP001011|pid:none) Xylella fastidiosa M23, complet... 71 4e-11
CP000777_788(CP000777|pid:none) Leptospira biflexa serovar Patoc... 71 4e-11
(Q2FYZ9) RecName: Full=DNA mismatch repair protein mutS; &AF378... 71 4e-11
AP010656_384(AP010656|pid:none) Candidatus Azobacteroides pseudo... 70 5e-11
(Q3AQZ8) RecName: Full=DNA mismatch repair protein mutS; &CP000... 70 5e-11
(Q7MXR7) RecName: Full=DNA mismatch repair protein mutS; &AE015... 70 5e-11
(A4JFW7) RecName: Full=DNA mismatch repair protein mutS; &CP000... 70 5e-11
CP001581_1819(CP001581|pid:none) Clostridium botulinum A2 str. K... 70 5e-11
CU468135_2694(CU468135|pid:none) Erwinia tasmaniensis strain ET1... 70 5e-11
(B1IM68) RecName: Full=DNA mismatch repair protein mutS; &CP000... 70 5e-11
(A3CR17) RecName: Full=DNA mismatch repair protein mutS; &CP000... 70 5e-11
(Q8Y093) RecName: Full=DNA mismatch repair protein mutS; &AL646... 70 5e-11
(B1KSA3) RecName: Full=DNA mismatch repair protein mutS; &CP000... 70 5e-11
CP001100_93(CP001100|pid:none) Chloroherpeton thalassium ATCC 35... 70 7e-11
(B1YMD7) RecName: Full=DNA mismatch repair protein mutS; &CP001... 70 7e-11
(A0B976) RecName: Full=DNA mismatch repair protein mutS; &CP000... 70 7e-11
CP001161_392(CP001161|pid:none) Buchnera aphidicola str. 5A (Acy... 70 7e-11
CP001158_390(CP001158|pid:none) Buchnera aphidicola str. Tuc7 (A... 70 7e-11
(P57504) RecName: Full=DNA mismatch repair protein mutS; &BA000... 70 7e-11
CP001111_1166(CP001111|pid:none) Stenotrophomonas maltophilia R5... 70 7e-11
CP000806_2150(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu... 70 7e-11
(P61669) RecName: Full=DNA mismatch repair protein mutS; &AE016... 70 7e-11
(Q39EX8) RecName: Full=DNA mismatch repair protein mutS; &CP000... 70 7e-11
(Q83CQ2) RecName: Full=DNA mismatch repair protein mutS; 70 9e-11
(A9NCN3) RecName: Full=DNA mismatch repair protein mutS; &CP000... 70 9e-11
(A9KG24) RecName: Full=DNA mismatch repair protein mutS; 70 9e-11
(Q56215) RecName: Full=DNA mismatch repair protein mutS; &U3311... 69 1e-10
CU694395_37(CU694395|pid:none) Ralstonia solanacearum strain Mol... 69 1e-10
AE007317_1885(AE007317|pid:none) Streptococcus pneumoniae R6, co... 69 1e-10
CU914168_1704(CU914168|pid:none) Ralstonia solanacearum strain I... 69 1e-10
AP008981_431(AP008981|pid:none) Orientia tsutsugamushi str. Iked... 69 1e-10
CP000921_1883(CP000921|pid:none) Streptococcus pneumoniae Taiwan... 69 1e-10
CP001150_2616(CP001150|pid:none) Rhodobacter sphaeroides KD131 c... 69 1e-10
(Q3IYI5) RecName: Full=DNA mismatch repair protein mutS; &CP000... 69 1e-10
(P0A3R3) RecName: Full=DNA mismatch repair protein hexA; &(P0A3... 69 1e-10
(B0CF30) RecName: Full=DNA mismatch repair protein mutS; &CP000... 69 1e-10
(A5CDU2) RecName: Full=DNA mismatch repair protein mutS; &AM494... 69 1e-10
(Q8EBR9) RecName: Full=DNA mismatch repair protein mutS; &AE014... 69 1e-10
(A3PNR5) RecName: Full=DNA mismatch repair protein mutS; &CP000... 69 1e-10
AJ783432_1(AJ783432|pid:none) Pseudomonas stutzeri mutS gene for... 69 1e-10
CP001015_1945(CP001015|pid:none) Streptococcus pneumoniae G54, c... 69 1e-10
(Q7NLT8) RecName: Full=DNA mismatch repair protein mutS; &BA000... 69 1e-10
CP000967_3186(CP000967|pid:none) Xanthomonas oryzae pv. oryzae P... 69 2e-10
(A5W816) RecName: Full=DNA mismatch repair protein mutS; &CP000... 69 2e-10
(A8AZU4) RecName: Full=DNA mismatch repair protein mutS; &CP000... 69 2e-10
(Q0HL63) RecName: Full=DNA mismatch repair protein mutS; &CP000... 69 2e-10
(Q47DJ8) RecName: Full=DNA mismatch repair protein mutS; &CP000... 69 2e-10
CP001068_974(CP001068|pid:none) Ralstonia pickettii 12J chromoso... 69 2e-10
AP009380_2041(AP009380|pid:none) Porphyromonas gingivalis ATCC 3... 69 2e-10
(A0KU91) RecName: Full=DNA mismatch repair protein mutS; &CP000... 69 2e-10
(Q8KCC0) RecName: Full=DNA mismatch repair protein mutS; &AE006... 69 2e-10
(Q086A1) RecName: Full=DNA mismatch repair protein mutS; &CP000... 69 2e-10
(B8FJL5) RecName: Full=DNA mismatch repair protein mutS; &CP001... 69 2e-10
(A9GIM9) RecName: Full=DNA mismatch repair protein mutS; &AM746... 69 2e-10
(A9KL10) RecName: Full=DNA mismatch repair protein mutS; &CP000... 69 2e-10
(A1RHG2) RecName: Full=DNA mismatch repair protein mutS; &(A4Y9... 69 2e-10
(Q0A8K3) RecName: Full=DNA mismatch repair protein mutS; &CP000... 68 3e-10
(A4G717) RecName: Full=DNA mismatch repair protein mutS; &CU207... 68 3e-10
CP001392_1064(CP001392|pid:none) Diaphorobacter sp. TPSY, comple... 68 3e-10
CP001252_1214(CP001252|pid:none) Shewanella baltica OS223, compl... 68 3e-10
CP001101_799(CP001101|pid:none) Chlorobium phaeobacteroides BS1,... 68 3e-10
(Q47WN0) RecName: Full=DNA mismatch repair protein mutS; &CP000... 68 3e-10
(A6WR19) RecName: Full=DNA mismatch repair protein mutS; &CP000... 68 3e-10
(A3D786) RecName: Full=DNA mismatch repair protein mutS; &CP000... 68 3e-10
(Q88ME7) RecName: Full=DNA mismatch repair protein mutS; &AE015... 68 3e-10
(Q0VNJ1) RecName: Full=DNA mismatch repair protein mutS; &AM286... 68 3e-10
(A1TNU7) RecName: Full=DNA mismatch repair protein mutS; &CP000... 68 3e-10
(B1JB25) RecName: Full=DNA mismatch repair protein mutS; &CP000... 68 3e-10
CP001485_53(CP001485|pid:none) Vibrio cholerae MJ-1236 chromosom... 68 3e-10
AY191320_1(AY191320|pid:none) Synechococcus sp. PCC 7942 DNA mis... 68 3e-10
(Q48F92) RecName: Full=DNA mismatch repair protein mutS; &CP000... 68 3e-10
(P61666) RecName: Full=DNA mismatch repair protein mutS; &AE017... 68 3e-10
(Q1I659) RecName: Full=DNA mismatch repair protein mutS; &CT573... 68 3e-10
(P61671) RecName: Full=DNA mismatch repair protein mutS; &AE017... 68 3e-10
(Q5N0X9) RecName: Full=DNA mismatch repair protein mutS; &AP008... 68 3e-10
(Q56239) RecName: Full=DNA mismatch repair protein mutS; &AP008... 68 3e-10
(Q6LMU0) RecName: Full=DNA mismatch repair protein mutS; &CR378... 68 3e-10
(A1VDD9) RecName: Full=DNA mismatch repair protein mutS; &CP000... 68 3e-10
CP001339_1263(CP001339|pid:none) Thioalkalivibrio sp. HL-EbGR7, ... 68 3e-10
S62790(S62790)mismatch DNA recognition protein mutS [validated] ... 68 3e-10
(A9VS13) RecName: Full=DNA mismatch repair protein mutS; &CP000... 68 3e-10
(A1S4E6) RecName: Full=DNA mismatch repair protein mutS; &CP000... 68 3e-10
(B7ITM1) RecName: Full=DNA mismatch repair protein mutS; &CP001... 67 5e-10
(Q38YR4) RecName: Full=DNA mismatch repair protein mutS; &CR936... 67 5e-10
(A7FLX1) RecName: Full=DNA mismatch repair protein mutS; &(Q66E... 67 5e-10
AM181176_1138(AM181176|pid:none) Pseudomonas fluorescens SBW25 c... 67 5e-10
(A4TQ04) RecName: Full=DNA mismatch repair protein mutS; &(Q1CL... 67 5e-10
AL009126_1761(AL009126|pid:none) Bacillus subtilis subsp. subtil... 67 5e-10
AY150295_1(AY150295|pid:none) Enterococcus faecium strain E0013 ... 67 6e-10
(B7HDP4) RecName: Full=DNA mismatch repair protein mutS; &CP001... 67 6e-10
CP001050_2322(CP001050|pid:none) Neisseria gonorrhoeae NCCP11945... 67 6e-10
(Q636Q7) RecName: Full=DNA mismatch repair protein mutS; &CP000... 67 6e-10
(A1VLZ6) RecName: Full=DNA mismatch repair protein mutS; &CP000... 67 6e-10
(Q5F5J4) RecName: Full=DNA mismatch repair protein mutS; &AE004... 67 6e-10
(Q82ZA2) RecName: Full=DNA mismatch repair protein mutS; &AE016... 67 6e-10
CP000817_1607(CP000817|pid:none) Lysinibacillus sphaericus C3-41... 67 6e-10
(B7HLA3) RecName: Full=DNA mismatch repair protein mutS; &CP001... 67 6e-10
(A0RHE1) RecName: Full=DNA mismatch repair protein mutS; &CP000... 67 6e-10
(Q81WR3) RecName: Full=DNA mismatch repair protein mutS; &AE016... 67 6e-10
CP000270_2800(CP000270|pid:none) Burkholderia xenovorans LB400 c... 67 6e-10
(A4VJN9) RecName: Full=DNA mismatch repair protein mutS; 67 6e-10
(Q6HF46) RecName: Full=DNA mismatch repair protein mutS; &AE017... 67 6e-10
(Q01X96) RecName: Full=DNA mismatch repair protein mutS; &CP000... 67 6e-10
(Q12PY3) RecName: Full=DNA mismatch repair protein mutS; &CP000... 67 6e-10
AY150298_1(AY150298|pid:none) Enterococcus faecium strain C1 Mut... 67 6e-10
(A7GR99) RecName: Full=DNA mismatch repair protein mutS; &CP000... 67 8e-10
(Q9HY08) RecName: Full=DNA mismatch repair protein mutS; &AE004... 67 8e-10
AF220055_1(AF220055|pid:none) Pseudomonas aeruginosa mismatch re... 67 8e-10
(Q1IN52) RecName: Full=DNA mismatch repair protein mutS; &CP000... 67 8e-10
(A6V1G8) RecName: Full=DNA mismatch repair protein mutS; &CP000... 67 8e-10
AJ783431_1(AJ783431|pid:none) Pseudomonas stutzeri mutS gene for... 67 8e-10
AY766184_7(AY766184|pid:none) Uncultured murine large bowel bact... 67 8e-10
(Q65QA9) RecName: Full=DNA mismatch repair protein mutS; &AE016... 67 8e-10
EU652258_1(EU652258|pid:none) Vibrio parahaemolyticus strain J-C... 66 1e-09
(Q5E7G7) RecName: Full=DNA mismatch repair protein mutS; &CP000... 66 1e-09
CP001127_2849(CP001127|pid:none) Salmonella enterica subsp. ente... 66 1e-09
(Q4KHE3) RecName: Full=DNA mismatch repair protein mutS; &CP000... 66 1e-09
(A9MF43) RecName: Full=DNA mismatch repair protein mutS; &CP000... 66 1e-09
CR857902_1(CR857902|pid:none) Pongo abelii mRNA; cDNA DKFZp469H2... 66 1e-09
AM778956_116(AM778956|pid:none) Microcystis aeruginosa PCC 7806 ... 66 1e-09
FJ539011_1(FJ539011|pid:none) Salmonella enterica subsp. enteric... 66 1e-09
(Q87LQ9) RecName: Full=DNA mismatch repair protein mutS; &BA000... 66 1e-09
CP000857_2849(CP000857|pid:none) Salmonella enterica subsp. ente... 66 1e-09
(Q5PEE6) RecName: Full=DNA mismatch repair protein mutS; &CP000... 66 1e-09
(A9N1F8) RecName: Full=DNA mismatch repair protein mutS; &(P0A1... 66 1e-09
CP001144_2921(CP001144|pid:none) Salmonella enterica subsp. ente... 66 1e-09
(Q3KH79) RecName: Full=DNA mismatch repair protein mutS; &CP000... 66 1e-09
AB239764_1(AB239764|pid:none) Cricetulus griseus Msh3, DHFR gene... 66 1e-09
CP001113_2922(CP001113|pid:none) Salmonella enterica subsp. ente... 66 1e-09
CP001056_1751(CP001056|pid:none) Clostridium botulinum B str. Ek... 66 1e-09
EU652253_1(EU652253|pid:none) Vibrio parahaemolyticus strain ATC... 66 1e-09
(Q60BA1) RecName: Full=DNA mismatch repair protein mutS; &AE017... 66 1e-09
(A2C5T5) RecName: Full=DNA mismatch repair protein mutS; &CP000... 66 1e-09
(B5XV49) RecName: Full=DNA mismatch repair protein mutS; &CP000... 66 1e-09
(A1JJU1) RecName: Full=DNA mismatch repair protein mutS; &AM286... 66 1e-09
(B0UWV7) RecName: Full=DNA mismatch repair protein mutS; &CP000... 66 1e-09
(A4WVX8) RecName: Full=DNA mismatch repair protein mutS; &CP000... 66 1e-09
(A6TD24) RecName: Full=DNA mismatch repair protein mutS; &AP006... 66 1e-09
(A6VL76) RecName: Full=DNA mismatch repair protein mutS; &CP000... 66 1e-09
(A0L7L5) RecName: Full=DNA mismatch repair protein mutS; &CP000... 66 1e-09
AY568591_1(AY568591|pid:none) Haemophilus influenzae isolate C23... 66 1e-09
CP001229_6(CP001229|pid:none) Sulfurihydrogenibium azorense Az-F... 66 1e-09
(Q3M892) RecName: Full=DNA mismatch repair protein mutS; &CP000... 65 2e-09
(A5FJ63) RecName: Full=DNA mismatch repair protein mutS; 65 2e-09
(Q16D05) RecName: Full=DNA mismatch repair protein mutS; &CP000... 65 2e-09
(Q3IDC8) RecName: Full=DNA mismatch repair protein mutS; &CR954... 65 2e-09
(B0KSD2) RecName: Full=DNA mismatch repair protein mutS; 65 2e-09
(Q15QR9) RecName: Full=DNA mismatch repair protein mutS; &CP000... 65 2e-09
(Q8K9D2) RecName: Full=DNA mismatch repair protein mutS; &AE013... 65 2e-09
AP008971_743(AP008971|pid:none) Finegoldia magna ATCC 29328 DNA,... 65 2e-09
(Q6D8C1) RecName: Full=DNA mismatch repair protein mutS; &BX950... 65 2e-09
DQ489736_1297(DQ489736|pid:none) Leuconostoc citreum KM20, compl... 65 2e-09
CP001600_3128(CP001600|pid:none) Edwardsiella ictaluri 93-146, c... 65 2e-09
(Q46IE5) RecName: Full=DNA mismatch repair protein mutS; &CP000... 65 2e-09
(Q7MHR2) RecName: Full=DNA mismatch repair protein mutS; 65 2e-09
(Q0BV38) RecName: Full=DNA mismatch repair protein mutS; &CP000... 65 2e-09
(A6GWN3) RecName: Full=DNA mismatch repair protein mutS; &AM398... 65 2e-09
(Q7V9M5) RecName: Full=DNA mismatch repair protein mutS; &AE017... 65 2e-09
BA000037_2807(BA000037|pid:none) Vibrio vulnificus YJ016 DNA, ch... 65 2e-09
(B0BRS8) RecName: Full=DNA mismatch repair protein mutS; &CP000... 65 2e-09
CP001091_1664(CP001091|pid:none) Actinobacillus pleuropneumoniae... 65 2e-09
FM954972_2463(FM954972|pid:none) Vibrio splendidus LGP32 chromos... 65 3e-09
(A5UE20) RecName: Full=DNA mismatch repair protein mutS; &CP000... 65 3e-09
CP001071_338(CP001071|pid:none) Akkermansia muciniphila ATCC BAA... 65 3e-09
CP001013_1174(CP001013|pid:none) Leptothrix cholodnii SP-6, comp... 65 3e-09
CP001078_1605(CP001078|pid:none) Clostridium botulinum E3 str. A... 65 3e-09
AY568593_1(AY568593|pid:none) Haemophilus influenzae isolate C24... 65 3e-09
(Q3ANH5) RecName: Full=DNA mismatch repair protein mutS; &CP000... 65 3e-09
(A1KWM6) RecName: Full=DNA mismatch repair protein mutS; &AM421... 64 4e-09
(Q5LWH0) RecName: Full=DNA mismatch repair protein mutS; &CP000... 64 4e-09
A33507(A33507) hypothetical protein DUC-1 - human &D61419_1(D61... 64 4e-09
(Q5X4B2) RecName: Full=DNA mismatch repair protein mutS; &CR628... 64 4e-09
(Q5QUB6) RecName: Full=DNA mismatch repair protein mutS; 64 4e-09
(A7ZQH3) RecName: Full=DNA mismatch repair protein mutS; 64 4e-09
(Q9JX94) RecName: Full=DNA mismatch repair protein mutS; &A8100... 64 4e-09
(Q5WVP6) RecName: Full=DNA mismatch repair protein mutS; &CR628... 64 4e-09
(P20585) RecName: Full=DNA mismatch repair protein Msh3; AltName... 64 4e-09
(Q0IE05) RecName: Full=DNA mismatch repair protein mutS; &CP000... 64 4e-09
AY275681_1(AY275681|pid:none) Homo sapiens mutS homolog 3 (E. co... 64 4e-09
(A9WFZ9) RecName: Full=DNA mismatch repair protein mutS; &CP000... 64 4e-09
(Q9JWT7) RecName: Full=DNA mismatch repair protein mutS; &AL157... 64 4e-09
U61981_1(U61981|pid:none) Human putative mismatch repair/binding... 64 4e-09
(Q21LB1) RecName: Full=DNA mismatch repair protein mutS; &CP000... 64 4e-09
AM889285_2079(AM889285|pid:none) Gluconacetobacter diazotrophicu... 64 4e-09
(A5GHU5) RecName: Full=DNA mismatch repair protein mutS; &CT971... 64 5e-09
(Q2LUL3) RecName: Full=DNA mismatch repair protein mutS; &CP000... 64 5e-09
CP001281_2220(CP001281|pid:none) Thauera sp. MZ1T, complete geno... 64 5e-09
(Q82U08) RecName: Full=DNA mismatch repair protein mutS; &AL954... 64 5e-09
CP000951_174(CP000951|pid:none) Synechococcus sp. PCC 7002, comp... 64 5e-09
CP000875_4058(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ... 64 7e-09
(O66652) RecName: Full=DNA mismatch repair protein mutS; &AE000... 64 7e-09
(Q4QML2) RecName: Full=DNA mismatch repair protein mutS; &CP000... 64 7e-09
(Q1GCK9) RecName: Full=DNA mismatch repair protein mutS; &CP000... 64 7e-09
(Q5NYP9) RecName: Full=DNA mismatch repair protein mutS; &CR555... 64 7e-09
(A4SFT1) RecName: Full=DNA mismatch repair protein mutS; &CP000... 64 7e-09
CP000970_2767(CP000970|pid:none) Escherichia coli SMS-3-5, compl... 63 9e-09
(Q0TEC9) RecName: Full=DNA mismatch repair protein mutS; &CP000... 63 9e-09
(Q8FEL3) RecName: Full=DNA mismatch repair protein mutS; &AE014... 63 9e-09
(P44834) RecName: Full=DNA mismatch repair protein mutS; &G6408... 63 9e-09
(A1K764) RecName: Full=DNA mismatch repair protein mutS; 63 9e-09
CP001107_1683(CP001107|pid:none) Eubacterium rectale ATCC 33656,... 63 9e-09
CU928162_3109(CU928162|pid:none) Escherichia coli ED1a chromosom... 63 9e-09
AE005174_3608(AE005174|pid:none) Escherichia coli O157:H7 EDL933... 63 9e-09
(B7LWH8) RecName: Full=DNA mismatch repair protein mutS; &(B7N6... 63 9e-09
(A8H1T4) RecName: Full=DNA mismatch repair protein mutS; &CP000... 63 9e-09
CP000697_903(CP000697|pid:none) Acidiphilium cryptum JF-5, compl... 63 9e-09
(B5Z397) RecName: Full=DNA mismatch repair protein mutS; &(B7LX... 63 9e-09
(B7GW85) RecName: Full=DNA mismatch repair protein mutS; &(B7IB... 63 9e-09
(B6I6B9) RecName: Full=DNA mismatch repair protein mutS; &AP009... 63 9e-09
(Q32CJ6) RecName: Full=DNA mismatch repair protein mutS; &CP000... 63 9e-09
AF440200_1(AF440200|pid:none) Escherichia coli strain B MutS (mu... 63 1e-08
AM933172_2737(AM933172|pid:none) Salmonella enterica subsp. ente... 63 1e-08
(A3QC86) RecName: Full=DNA mismatch repair protein mutS; &CP000... 63 1e-08
(Q2SBR5) RecName: Full=DNA mismatch repair protein mutS; 63 1e-08
CP000155_4989(CP000155|pid:none) Hahella chejuensis KCTC 2396, c... 63 1e-08
FM200053_2709(FM200053|pid:none) Salmonella enterica subsp. ente... 63 1e-08
(B0TK13) RecName: Full=DNA mismatch repair protein mutS; &CP000... 63 1e-08
(A8A3L2) RecName: Full=DNA mismatch repair protein mutS; &(B1IU... 63 1e-08
(Q2NVL9) RecName: Full=DNA mismatch repair protein mutS; &AP008... 62 1e-08
AY568596_1(AY568596|pid:none) Haemophilus influenzae isolate R46... 62 1e-08
CP001277_1460(CP001277|pid:none) Candidatus Hamiltonella defensa... 62 1e-08
CU928166_215(CU928166|pid:none) Kluyveromyces thermotolerans str... 62 1e-08
(A4SIL2) RecName: Full=DNA mismatch repair protein mutS; &CP000... 62 2e-08
EU652259_1(EU652259|pid:none) Vibrio parahaemolyticus strain J-C... 62 2e-08
DQ465631_1(DQ465631|pid:none) Neisseria meningitidis strain Z126... 62 2e-08
(O83348) RecName: Full=DNA mismatch repair protein mutS; &AE000... 62 2e-08
(P13705) RecName: Full=DNA mismatch repair protein Msh3; ... 62 2e-08
CP000713_1997(CP000713|pid:none) Psychrobacter sp. PRwf-1, compl... 61 3e-08
(A8FST7) RecName: Full=DNA mismatch repair protein mutS; &CP000... 61 3e-08
CP001102_713(CP001102|pid:none) Candidatus Amoebophilus asiaticu... 61 3e-08
(Q6FC54) RecName: Full=DNA mismatch repair protein mutS; &CR543... 61 4e-08
U69873_1(U69873|pid:none) Escherichia coli DNA mismatch repair p... 61 4e-08
CP000675_1894(CP000675|pid:none) Legionella pneumophila str. Cor... 61 4e-08
CP000407_2116(CP000407|pid:none) Streptococcus suis 05ZYH33, com... 61 4e-08
(Q2S254) RecName: Full=DNA mismatch repair protein mutS; &CP000... 61 4e-08
(Q3SJP0) RecName: Full=DNA mismatch repair protein mutS; &CP000... 61 4e-08
(Q7VKA1) RecName: Full=DNA mismatch repair protein mutS; &AE017... 61 4e-08
AF400582_3(AF400582|pid:none) Acinetobacter sp. ADP1 mismatch re... 60 6e-08
CP000316_3260(CP000316|pid:none) Polaromonas sp. JS666, complete... 60 6e-08
(A2BTM6) RecName: Full=DNA mismatch repair protein mutS; &CP000... 60 7e-08
(Q0BNM7) RecName: Full=DNA mismatch repair protein mutS; &CP000... 60 7e-08
AP009153_3911(AP009153|pid:none) Gemmatimonas aurantiaca T-27 DN... 60 7e-08
CP000975_109(CP000975|pid:none) Methylacidiphilum infernorum V4,... 60 7e-08
(A3PFD3) RecName: Full=DNA mismatch repair protein mutS; &CP000... 60 7e-08
(A0Q809) RecName: Full=DNA mismatch repair protein mutS; &CP000... 60 9e-08
(A6W1Q6) RecName: Full=DNA mismatch repair protein mutS; &CP000... 60 9e-08
(Q89AD3) RecName: Full=DNA mismatch repair protein mutS; &AE016... 59 1e-07
CP001154_372(CP001154|pid:none) Laribacter hongkongensis HLHK9, ... 59 1e-07
(Q7UZL6) RecName: Full=DNA mismatch repair protein mutS; &BX548... 59 1e-07
(P26359) RecName: Full=DNA mismatch repair protein msh3; AltName... 59 2e-07
(Q4FV41) RecName: Full=DNA mismatch repair protein mutS; &CP000... 59 2e-07
(Q7W880) RecName: Full=DNA mismatch repair protein mutS; 58 3e-07
BX640429_310(BX640429|pid:none) Bordetella parapertussis strain ... 58 3e-07
CP001230_748(CP001230|pid:none) Persephonella marina EX-H1, comp... 58 3e-07
CP000934_2294(CP000934|pid:none) Cellvibrio japonicus Ueda107, c... 58 3e-07
CP001615_102(CP001615|pid:none) Exiguobacterium sp. AT1b, comple... 58 3e-07
(Q7VY01) RecName: Full=DNA mismatch repair protein mutS; &BX640... 58 3e-07
CP000521_1343(CP000521|pid:none) Acinetobacter baumannii ATCC 17... 58 3e-07
(Q7NRW7) RecName: Full=DNA mismatch repair protein mutS; &AE016... 58 4e-07
CP001321_1328(CP001321|pid:none) Haemophilus parasuis SH0165, co... 58 4e-07
CP001344_3540(CP001344|pid:none) Cyanothece sp. PCC 7425, comple... 57 5e-07
AY596297_2586(AY596297|pid:none) Haloarcula marismortui ATCC 430... 57 6e-07
(Q5KKX1) RecName: Full=DNA mismatch repair protein MSH3; AltName... 57 8e-07
AY596297_2248(AY596297|pid:none) Haloarcula marismortui ATCC 430... 57 8e-07
(Q2KWZ4) RecName: Full=DNA mismatch repair protein mutS; &AM167... 56 1e-06
CP001145_1036(CP001145|pid:none) Coprothermobacter proteolyticus... 55 2e-06
CP000386_287(CP000386|pid:none) Rubrobacter xylanophilus DSM 994... 55 2e-06
AM902716_3482(AM902716|pid:none) Bordetella petrii strain DSM 12... 55 2e-06
AM270298_35(AM270298|pid:none) Aspergillus niger contig An13c004... 55 2e-06
BX640442_21(BX640442|pid:none) Bordetella bronchiseptica strain ... 55 2e-06
(Q1QZX5) RecName: Full=DNA mismatch repair protein mutS; &CP000... 55 2e-06
AM982525_1(AM982525|pid:none) Pseudomonas avellanae partial mutS... 55 3e-06
CR382128_386(CR382128|pid:none) Yarrowia lipolytica strain CLIB1... 55 3e-06
AK078467_1(AK078467|pid:none) Mus musculus 12 days embryo female... 55 3e-06

>(Q55GU9) RecName: Full=DNA mismatch repair protein Msh6;
Length = 1260

Score = 402 bits (1032), Expect = e-111
Identities = 196/196 (100%), Positives = 196/196 (100%)
Frame = +3

Query: 3 KDKKEIEERYSFLVNIKDANGNPKDHPDYDKRTLHIPASCLSKFSPFERQFWDIKSKNYD 182
KDKKEIEERYSFLVNIKDANGNPKDHPDYDKRTLHIPASCLSKFSPFERQFWDIKSKNYD
Sbjct: 317 KDKKEIEERYSFLVNIKDANGNPKDHPDYDKRTLHIPASCLSKFSPFERQFWDIKSKNYD 376

Query: 183 TVVFFKKGKFYELYESDADIGHQQLHLKLTDRVNMRMVGVPEMSFNHWASKLIHLGHKVA 362
TVVFFKKGKFYELYESDADIGHQQLHLKLTDRVNMRMVGVPEMSFNHWASKLIHLGHKVA
Sbjct: 377 TVVFFKKGKFYELYESDADIGHQQLHLKLTDRVNMRMVGVPEMSFNHWASKLIHLGHKVA 436

Query: 363 KVDQMETSIGMAKRQNEKGGRNKKDSIIQRELTSILTAGTLLDEQMITDQTSTYLMAIKE 542
KVDQMETSIGMAKRQNEKGGRNKKDSIIQRELTSILTAGTLLDEQMITDQTSTYLMAIKE
Sbjct: 437 KVDQMETSIGMAKRQNEKGGRNKKDSIIQRELTSILTAGTLLDEQMITDQTSTYLMAIKE 496

Query: 543 NEYDKQYGVCFVDVSI 590
NEYDKQYGVCFVDVSI
Sbjct: 497 NEYDKQYGVCFVDVSI 512

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,090,166,556
Number of extensions: 24394575
Number of successful extensions: 48674
Number of sequences better than 10.0: 558
Number of HSP's gapped: 48149
Number of HSP's successfully gapped: 558
Length of query: 249
Length of database: 1,040,966,779
Length adjustment: 125
Effective length of query: 124
Effective length of database: 640,431,154
Effective search space: 79413463096
Effective search space used: 79413463096
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

PSORT

psg: 0.74 gvh: 0.35 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.15 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: nuclear
32.0 %: cytoplasmic
16.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: mitochondrial
4.0 %: vesicles of secretory system

>> prediction for Contig-U11231-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 1
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0