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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U11209-1
Contig ID Contig-U11209-1
Contig update 2002.12.18
Contig sequence 
>Contig-U11209-1 (Contig-U11209-1Q) /CSM_Contig/Contig-U11209-1Q.Seq.d
ATTAAAAATTAATTGTTTTTTCATTTTTTTCCTTTTTTATAACACTACAC
ATTGTATTTATTGTTTAATTGTTTTTTTAATAATAATAATATAATTGTTT
TTTTTTTTTTTAAAAAAATAGATTAAAAAAAAAA----------TTAGAT
TGGAGAACTCTTGGTAAATTNTATAAAACTGNTCGTGCTCTTGCACTAGA
AAGAGCTTTTCCACCAAANCCAATCTCAAGATCACCTTCNCCTTCACCTT
CTTCAAGTTTAAAATTATCAACTGGTTTATCAAATCAAATTGAATTACAA
CAACAACAACAACAACAACAACCACAACCAATTGGTACAACAATTAATTT
AATACCACCATCTTCAAATGTTTCAGTAACACCTACTACAACACCAACAA
CTACAACAACTGCAACTACAGCAACTACAGCACCAATCACAACACCAAAA
CCAAATGTAATTCCAATTAATACTGGTAAAGAAAATATCACTTTATTATC
ACCAAATTCAATGTCTTCACTTTTAAGTGATTCATTAAATGAATCTAAAA
AACAACAACAACAACAACAACAATCTAAAACACCAACAACACCAACAACA
ACATCAACAACGACAACAACACCATCAACTACAGCAGCGGCAACAAATAA
ATCAGTTTTATCAAATCCAACACCAACACCATCTCCAAATACATCATCAT
TCATTCCAACAAATAAAGGATCCACAGCAACAACTACAACAACAACAGCA
ACACCAACACCAACACCAAGTAATAATACTAATGGTAAACCATTTAATCC
AATTGAAGCATTAACTAAAAGTAACAGTAGTAGTAATTTTGCAACAACTT
CAACTGCTTCTGTAAACACCAACAATGGTGGCACTAATTCACCAGTATCT
AAATCAATACCAATTCCTTCTTCAAAATCATTAAAATAAT
Gap gap included
Contig length 930
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 539660
End point 540591
Strand (PLUS/MINUS) PLUS
Number of clones 17
Number of EST 19
Link to clone list U11209
List of clone(s) 

est1=AHE278F,1,130
est2=AHB683F,3,107
est3=SHC366F,23,134
est4=CHR602Z,135,585
est5=AHD170Z,267,802
est6=SHD404Z,303,839
est7=SHA459Z,309,894
est8=SHA402Z,312,805
est9=AHP468Z,325,929
est10=AHN767Z,334,897
est11=SHJ726Z,350,907
est12=AHQ115Z,377,931
est13=SHC366Z,382,871
est14=VHD538Z,396,668
est15=SHK678Z,412,716
est16=SHA692Z,418,772
est17=SFF611Z,563,824
est18=SHF294Z,576,822
est19=AHB683Z,609,715
Translated Amino Acid sequence 
*klivfsffsffitlhivfiv*lff****yncffff*KNRLKKK---

---LDWRTLGKXYKTXRALALERAFPPXPISRSPSPSPSSSLKLSTGLSNQIELQQQQQQ
QQPQPIGTTINLIPPSSNVSVTPTTTPTTTTTATTATTAPITTPKPNVIPINTGKENITL
LSPNSMSSLLSDSLNESKKQQQQQQQSKTPTTPTTTSTTTTTPSTTAAATNKSVLSNPTP
TPSPNTSSFIPTNKGSTATTTTTTATPTPTPSNNTNGKPFNPIEALTKSNSSSNFATTST
ASVNTNNGGTNSPVSKSIPIPSSKSLK*
Translated Amino Acid sequence (All Frames) 
Frame A:
ikn*lffhffpfl*hytlyllfncffnnnniivffffkkid*kk---

---LDWRTLGKXYKTXRALALERAFPPXPISRSPSPSPSSSLKLSTGLSNQIELQQQQQQ
QQPQPIGTTINLIPPSSNVSVTPTTTPTTTTTATTATTAPITTPKPNVIPINTGKENITL
LSPNSMSSLLSDSLNESKKQQQQQQQSKTPTTPTTTSTTTTTPSTTAAATNKSVLSNPTP
TPSPNTSSFIPTNKGSTATTTTTTATPTPTPSNNTNGKPFNPIEALTKSNSSSNFATTST
ASVNTNNGGTNSPVSKSIPIPSSKSLK*

Frame B:
lkincffifflfyntthciyclivfliiii*lfffflkk*ikkk---

---*igellvnxiklxvllh*kelfhqxqsqdhlxlhllqv*nyqlvyqiklnynnnnnn
nnhnqlvqqli*yhhlqmfq*hllqhqqlqqlqlqqlqhqsqhqnqm*fqlilvkkisly
yhqiqclhf*vih*mnlknnnnnnnnlkhqqhqqqhqqrqqhhqlqqrqqinqfyqiqhq
hhlqihhhsfqqikdpqqqlqqqqqhqhqhqviilmvnhliqlkh*lkvtvvvilqqlql
ll*tptmvalihqylnqyqfllqnh*nn

Frame C:
*klivfsffsffitlhivfiv*lff****yncffff*KNRLKKK---

---rlensw*ix*nxscsctrksfstkxnlkitfxftffkfkiinwfiksn*ittttttt
ttttnwynn*fnttifkcfsntyyntnnynncnysnystnhntktkcnsn*yw*rkyhfi
itkfnvftfk*fik*i*kttttttti*ntnntnnninndnntinyssgnk*isfiksntn
tiskyiiihsnk*rihsnnynnnsntntntk**y*w*ti*sn*sin*k*q***fcnnfnc
fckhqqwwh*ftsi*intnsffkiiki
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U11209-1 (Contig-U11209-1Q)
/CSM_Contig/Contig-U11209-1Q.Seq.d
         (940 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U11209-1 (Contig-U11209-1Q) /CSM_Contig/Conti...   339  3e-93
Contig-U09189-1 (Contig-U09189-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U12435-1 (Contig-U12435-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U09658-1 (Contig-U09658-1Q) /CSM_Contig/Conti...    38  0.017
Contig-U02820-1 (Contig-U02820-1Q) /CSM_Contig/Conti...    38  0.017
Contig-U14511-1 (Contig-U14511-1Q) /CSM_Contig/Conti...    36  0.066
Contig-U14010-1 (Contig-U14010-1Q) /CSM_Contig/Conti...    36  0.066
Contig-U12146-1 (Contig-U12146-1Q) /CSM_Contig/Conti...    36  0.066
Contig-U11834-1 (Contig-U11834-1Q) /CSM_Contig/Conti...    36  0.066
Contig-U12495-1 (Contig-U12495-1Q) /CSM_Contig/Conti...    34  0.26

>Contig-U11209-1 (Contig-U11209-1Q) /CSM_Contig/Contig-U11209-1Q.Seq.d
          Length = 940

 Score =  339 bits (171), Expect = 3e-93
 Identities = 171/171 (100%)
 Strand = Plus / Plus

                                                                       
Query: 770 gtaataatactaatggtaaaccatttaatccaattgaagcattaactaaaagtaacagta 829
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 gtaataatactaatggtaaaccatttaatccaattgaagcattaactaaaagtaacagta 829

                                                                       
Query: 830 gtagtaattttgcaacaacttcaactgcttctgtaaacaccaacaatggtggcactaatt 889
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 gtagtaattttgcaacaacttcaactgcttctgtaaacaccaacaatggtggcactaatt 889

                                                              
Query: 890 caccagtatctaaatcaataccaattccttcttcaaaatcattaaaataat 940
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 caccagtatctaaatcaataccaattccttcttcaaaatcattaaaataat 940


 Score =  278 bits (140), Expect = 1e-74
 Identities = 152/152 (100%)
 Strand = Plus / Plus

                                                                       
Query: 145 ttagattggagaactcttggtaaattntataaaactgntcgtgctcttgcactagaaaga 204
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 ttagattggagaactcttggtaaattntataaaactgntcgtgctcttgcactagaaaga 204

                                                                       
Query: 205 gcttttccaccaaanccaatctcaagatcaccttcnccttcaccttcttcaagtttaaaa 264
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gcttttccaccaaanccaatctcaagatcaccttcnccttcaccttcttcaagtttaaaa 264

                                           
Query: 265 ttatcaactggtttatcaaatcaaattgaatt 296
           ||||||||||||||||||||||||||||||||
Sbjct: 265 ttatcaactggtttatcaaatcaaattgaatt 296


 Score =  196 bits (99), Expect = 3e-50
 Identities = 99/99 (100%)
 Strand = Plus / Plus

                                                                       
Query: 452 caaatgtaattccaattaatactggtaaagaaaatatcactttattatcaccaaattcaa 511
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 caaatgtaattccaattaatactggtaaagaaaatatcactttattatcaccaaattcaa 511

                                                  
Query: 512 tgtcttcacttttaagtgattcattaaatgaatctaaaa 550
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 512 tgtcttcacttttaagtgattcattaaatgaatctaaaa 550


 Score =  182 bits (92), Expect = 5e-46
 Identities = 92/92 (100%)
 Strand = Plus / Plus

                                                                       
Query: 630 tacagcagcggcaacaaataaatcagttttatcaaatccaacaccaacaccatctccaaa 689
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 tacagcagcggcaacaaataaatcagttttatcaaatccaacaccaacaccatctccaaa 689

                                           
Query: 690 tacatcatcattcattccaacaaataaaggat 721
           ||||||||||||||||||||||||||||||||
Sbjct: 690 tacatcatcattcattccaacaaataaaggat 721


 Score = 91.7 bits (46), Expect = 1e-18
 Identities = 46/46 (100%)
 Strand = Plus / Plus

                                                         
Query: 344 ttaatttaataccaccatcttcaaatgtttcagtaacacctactac 389
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ttaatttaataccaccatcttcaaatgtttcagtaacacctactac 389


 Score = 75.8 bits (38), Expect = 8e-14
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                     
Query: 39 ataacactacacattgtatttattgtttaattgnnnnnnnaataataataatataattg 97
          |||||||||||||||||||||||||||||||||       |||||||||||||||||||
Sbjct: 39 ataacactacacattgtatttattgtttaattgtttttttaataataataatataattg 97


 Score = 30.2 bits (15), Expect = 4.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                         
Query: 1  attaaaaattaattg 15
          |||||||||||||||
Sbjct: 1  attaaaaattaattg 15


 Score = 30.2 bits (15), Expect = 4.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 667 ccaacaccaacacca 681
           |||||||||||||||
Sbjct: 754 ccaacaccaacacca 768


>Contig-U09189-1 (Contig-U09189-1Q) /CSM_Contig/Contig-U09189-1Q.Seq.d
          Length = 1118

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 663 aaatccaacaccaacaccatctccaa 688
           ||||||||||||||||||||| ||||
Sbjct: 498 aaatccaacaccaacaccatcaccaa 523


 Score = 30.2 bits (15), Expect = 4.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 667 ccaacaccaacacca 681
           |||||||||||||||
Sbjct: 544 ccaacaccaacacca 558


>Contig-U12435-1 (Contig-U12435-1Q) /CSM_Contig/Contig-U12435-1Q.Seq.d
          Length = 1808

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 657  tttatcaaatccaacaccaacacca 681
            ||||| |||||||||||||||||||
Sbjct: 1337 tttattaaatccaacaccaacacca 1361


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 24,776
Number of Sequences: 6905
Number of extensions: 24776
Number of successful extensions: 9592
Number of sequences better than 10.0: 334
length of query: 940
length of database: 5,674,871
effective HSP length: 16
effective length of query: 924
effective length of database: 5,564,391
effective search space: 5141497284
effective search space used: 5141497284
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.23
Homology vs DNA 
Query= Contig-U11209-1 (Contig-U11209-1Q) /CSM_Contig/Contig-U11209-1Q.Seq.d
         (940 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ356835) Dictyostelium discoideum cDNA clone:dda61h18, 3' ...   216   e-176  5
(BJ357321) Dictyostelium discoideum cDNA clone:dda63m03, 3' ...   339   e-171  3
(BJ355894) Dictyostelium discoideum cDNA clone:dda58f17, 3' ...   272   e-162  4
(BJ403261) Dictyostelium discoideum cDNA clone:dds24f16, 3' ...   260   e-157  4
(BJ407670) Dictyostelium discoideum cDNA clone:dds43d07, 3' ...   285   e-155  3
(BJ386054) Dictyostelium discoideum cDNA clone:ddc57c02, 3' ...   278   e-130  3
(BJ404441) Dictyostelium discoideum cDNA clone:dds28d17, 3' ...   188   e-128  3
(BJ404934) Dictyostelium discoideum cDNA clone:dds30h02, 3' ...   182   e-125  4
(BJ349787) Dictyostelium discoideum cDNA clone:dda37k17, 3' ...   182   e-113  5
(BJ403093) Dictyostelium discoideum cDNA clone:dds24d02, 3' ...   182   e-108  4
(BJ408459) Dictyostelium discoideum cDNA clone:dds45k20, 3' ...   161   8e-70  2
(BJ403654) Dictyostelium discoideum cDNA clone:dds25g24, 3' ...   149   6e-62  3
(BJ406326) Dictyostelium discoideum cDNA clone:dds34k24, 3' ...   149   1e-61  2
(BJ398335) Dictyostelium discoideum cDNA clone:dds12e04, 3' ...   149   2e-60  2
(BJ438758) Dictyostelium discoideum cDNA clone:ddv38k09, 3' ...   165   3e-47  2
(BJ348923) Dictyostelium discoideum cDNA clone:dda34e22, 3' ...   149   2e-31  1
(BX510311) Zebrafish DNA sequence from clone CH211-235F16.         50   0.15   1
(AF325111) Mus musculus aryl-hydrocarbon receptor (Ahr) gene...    48   0.60   1
(AC159635) Mus musculus BAC clone RP24-111I3 from chromosome...    48   0.60   1
(DD380296) A polynucleotide for detecting heavy metal respon...    48   0.60   1
(Z67884) Caenorhabditis elegans Cosmid T14G8.                      48   0.60   1
(AC079734) Mus musculus strain C57BL6/J chromosome 12 clone ...    48   0.60   1
(C64482) Caenorhabditis elegans cDNA clone yk359d5 : 5' end,...    48   0.60   1
(C61142) Caenorhabditis elegans cDNA clone yk224g2 : 5' end,...    48   0.60   1
(T01830) wEST02551 Early embryo, Stratagene (cat. #937007) C...    48   0.60   1
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-...    34   1.8    8
(AM464761) Vitis vinifera contig VV78X037181.25, whole genom...    46   2.4    1
(EK412197) 1095505203086 Global-Ocean-Sampling_GS-31-01-01-1...    46   2.4    1
(EJ890498) 1093018439840 Global-Ocean-Sampling_GS-30-02-01-1...    46   2.4    1
(EJ877471) 1093018377632 Global-Ocean-Sampling_GS-30-02-01-1...    46   2.4    1
(CT558872) A BAC library has been constructed from cultivar ...    46   2.4    1
(AV023774) Mus musculus 18-day embryo cDNA, partial sequence...    40   2.7    2
(U23477) Dictyostelium discoideum phosphatidylinositol-4,5-d...    38   3.0    2
(BJ444314) Dictyostelium discoideum cDNA clone:ddv55p24, 3' ...    42   3.1    2
(AY958416) Drosophila parvula NADH dehydrogenase subunit 4L ...    44   3.6    2
(BJ441165) Dictyostelium discoideum cDNA clone:ddv45j23, 3' ...    42   4.7    2
(BJ404396) Dictyostelium discoideum cDNA clone:dds28k12, 3' ...    42   5.3    2
(BJ443396) Dictyostelium discoideum cDNA clone:ddv52e21, 3' ...    42   6.4    2
(BJ438795) Dictyostelium discoideum cDNA clone:ddv38b16, 3' ...    42   7.0    2
(FG701005) G1144P33FH15.T0 Anolis carolinensis pooled normal...    34   7.2    2
(ER508083) 1093015429520 Global-Ocean-Sampling_GS-35-01-01-1...    36   8.4    2
(AC121271) Mus musculus chromosome 7, clone RP24-554K14, com...    44   9.4    1
(AC116686) Mus musculus chromosome 7, clone RP23-457H7, comp...    44   9.4    1
(EU494039) Drosophila bostrycha voucher 109445 NADH dehydrog...    44   9.4    1
(EU494031) Drosophila nebulosa voucher 107549 NADH dehydroge...    44   9.4    1
(EU494018) Drosophila malerkotliana voucher 105504 NADH dehy...    44   9.4    1
(EU493994) Drosophila fraburu voucher 109373 NADH dehydrogen...    44   9.4    1
(DQ533708) Stomoxys calcitrans mitochondrion, partial genome.      44   9.4    1
(AY958415) Drosophila parabipectinata NADH dehydrogenase sub...    44   9.4    1
(AY958404) Drosophila bipectinata NADH dehydrogenase subunit...    44   9.4    1
(AY958398) Drosophila malerkotliana NADH dehydrogenase subun...    44   9.4    1
(AY842724) Chrysomya megacephala voucher ABTC78456 NADH dehy...    44   9.4    1
(AY429683) Dictyostelium discoideum dusty protein kinase gen...    44   9.4    1
(AY429682) Dictyostelium discoideum dusty protein kinase mRN...    44   9.4    1
(AJ426041) Chrysomya megacephala mitochondrial NADH2 gene, C...    44   9.4    1
(AC181685) Strongylocentrotus purpuratus clone R3-30P17, WOR...    44   9.4    1
(AC168458) Strongylocentrotus purpuratus clone R3-35J4, WORK...    44   9.4    1
(AK247427) Solanum lycopersicum cDNA, clone: LEFL1019CG12, H...    44   9.4    1
(FH775117) OSB_1168004xh08r1.ab1 OSB_1168 Nicotiana tabacum ...    44   9.4    1
(EK408704) 1095505109034 Global-Ocean-Sampling_GS-31-01-01-1...    44   9.4    1
(EJ489839) 1095403530737 Global-Ocean-Sampling_GS-28-01-01-1...    44   9.4    1
(EJ407253) 1093012105528 Global-Ocean-Sampling_GS-28-01-01-1...    44   9.4    1
(EJ255611) 1095349006907 Global-Ocean-Sampling_GS-27-01-01-1...    44   9.4    1
(CZ864624) OC__Ba0259K12.f OC__Ba Oryza coarctata genomic cl...    44   9.4    1
(AG567227) Mus musculus molossinus DNA, clone:MSMg01-488I09....    44   9.4    1
(CE121225) tigr-gss-dog-17000325911011 Dog Library Canis lup...    44   9.4    1
(DC233364) Plasmodium berghei strain ANKA cDNA clone:SG02742...    44   9.4    1
(DB694920) Solanum lycopersicum cDNA, clone: LEFL1052DH03, 5...    44   9.4    1
(DB684382) Solanum lycopersicum cDNA, clone: LEFL1019CG12, 5...    44   9.4    1
(AU034880) Dictyostelium discoideum slug cDNA, clone SLE634.       44   9.4    1
(D36293) Caenorhabditis elegans cDNA clone yk31b3 : 5' end, ...    44   9.4    1
(BW075578) Ciona intestinalis cDNA, clone:rcieg066g24, 3' en...    44   9.4    1
(BP882798) Solanum lycopersicum cDNA, clone: FA24AB03, 5' en...    44   9.4    1
(BF096607) EST360634 tomato nutrient deficient roots Solanum...    44   9.4    1
(FF600269) Le_emcl1_14A24_M13Reverse Little Skate (Leucoraja...    44   9.4    1
(FF136863) CJAH-aae82g01.b1 Caenorhabditis_japonica_CJAH1_ES...    44   9.4    1
(FF121127) CJAH-aab18f12.b1 Caenorhabditis_japonica_CJAH1_ES...    44   9.4    1
(FF120064) CJAH-aab75a03.b1 Caenorhabditis_japonica_CJAH1_ES...    44   9.4    1
(FF109734) CJAH-aaa71e07.b2 Caenorhabditis_japonica_CJAH1_ES...    44   9.4    1
(FF109669) CJAD-aaa03g01.b1 Caenorhabditis_japonica_EST_CJAD...    44   9.4    1

>(BJ356835) Dictyostelium discoideum cDNA clone:dda61h18, 3' end,
           single read.
          Length = 604

 Score =  216 bits (109), Expect(5) = e-176
 Identities = 109/109 (100%)
 Strand = Plus / Minus


Query: 770 gtaataatactaatggtaaaccatttaatccaattgaagcattaactaaaagtaacagta 829
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 gtaataatactaatggtaaaccatttaatccaattgaagcattaactaaaagtaacagta 110


Query: 830 gtagtaattttgcaacaacttcaactgcttctgtaaacaccaacaatgg 878
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 gtagtaattttgcaacaacttcaactgcttctgtaaacaccaacaatgg 61

 Score =  182 bits (92), Expect(5) = e-176
 Identities = 92/92 (100%)
 Strand = Plus / Minus


Query: 455 atgtaattccaattaatactggtaaagaaaatatcactttattatcaccaaattcaatgt 514
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 atgtaattccaattaatactggtaaagaaaatatcactttattatcaccaaattcaatgt 425


Query: 515 cttcacttttaagtgattcattaaatgaatct 546
           ||||||||||||||||||||||||||||||||
Sbjct: 424 cttcacttttaagtgattcattaaatgaatct 393

 Score =  149 bits (75), Expect(5) = e-176
 Identities = 75/75 (100%)
 Strand = Plus / Minus


Query: 647 ataaatcagttttatcaaatccaacaccaacaccatctccaaatacatcatcattcattc 706
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 ataaatcagttttatcaaatccaacaccaacaccatctccaaatacatcatcattcattc 233


Query: 707 caacaaataaaggat 721
           |||||||||||||||
Sbjct: 232 caacaaataaaggat 218

 Score =  113 bits (57), Expect(5) = e-176
 Identities = 59/60 (98%)
 Strand = Plus / Minus


Query: 880 ggcactaattcaccagtatctaaatcaataccaattccttcttcaaaatcattaaaataa 939
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 60  ggcactaattcaccagtatctaaatcaataccaattcctncttcaaaatcattaaaataa 1

 Score = 67.9 bits (34), Expect(5) = e-176
 Identities = 34/34 (100%)
 Strand = Plus / Minus


Query: 344 ttaatttaataccaccatcttcaaatgtttcagt 377
           ||||||||||||||||||||||||||||||||||
Sbjct: 595 ttaatttaataccaccatcttcaaatgtttcagt 562

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 686,424,028
Number of extensions: 43418785
Number of successful extensions: 3240655
Number of sequences better than 10.0: 83
Length of query: 940
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 916
Effective length of database: 97,308,875,965
Effective search space: 89134930383940
Effective search space used: 89134930383940
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.29
Homology vs Protein 
Query= Contig-U11209-1 (Contig-U11209-1Q) /CSM_Contig/Contig-U11209-1Q.Seq.d
         (940 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55GH4) RecName: Full=Glycogen [starch] synthase;          EC=2...   108   3e-22

>(Q55GH4) RecName: Full=Glycogen [starch] synthase;
           EC=2.4.1.11;
          Length = 878

 Score =  108 bits (269), Expect = 3e-22
 Identities = 64/116 (55%), Positives = 64/116 (55%)
 Frame = +1

Query: 145 LDWRTLGKXYKTXRALALERAFXXXXXXXXXXXXXXXXLKLSTGLSNQIELXXXXXXXXX 324
           LDWRTLGK YKT RALALERAF                LKLSTGLSNQIEL
Sbjct: 615 LDWRTLGKFYKTARALALERAFPPKPISRSPSPSPSSSLKLSTGLSNQIELQQQQQQQQP 674

Query: 325 XXIGTTINLIPPSSNVSVXXXXXXXXXXXXXXXXXXXXXXXKPNVIPINTGKENIT 492
             IGTTINLIPPSSNVSV                       KPNVIPINTGKENIT
Sbjct: 675 QPIGTTINLIPPSSNVSVTPTTTPTTTTTATTATTAPITTPKPNVIPINTGKENIT 730

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 500,349,946
Number of extensions: 4599324
Number of successful extensions: 7722
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7718
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 1,040,966,779
Length adjustment: 128
Effective length of query: 185
Effective length of database: 630,818,299
Effective search space: 116701385315
Effective search space used: 116701385315
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.63  gvh: 0.47  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.36  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 36.0 %: mitochondrial
	 20.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U11209-1 is cyt
VS (DIR, S) 0
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 6
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 8
SF (FL, S) 1
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0