| Contig-U11195-1 |
| Contig ID |
Contig-U11195-1 |
| Contig update |
2002.12.18 |
| Contig sequence |
 |
| Gap |
gap included |
| Contig length |
2858 |
| Chromosome number (1..6, M) |
2 |
| Chromosome length |
8467578 |
| Start point |
4308456 |
| End point |
4311316 |
| Strand (PLUS/MINUS) |
PLUS |
| Number of clones |
16 |
| Number of EST |
27 |
| Link to clone list |
U11195 |
| List of clone(s) |
est1=AHG216F,1,592
est2=CHF769F,326,770
est3=SHA820F,357,976
est4=SHK722F,378,986
est5=VHG345F,388,997
est6=SHF393F,514,1137
est7=VHE603F,516,1135
est8=AHB463F,568,1175
est9=AFF387F,816,1377
est10=AHL128F,977,1661
est11=AHO759F,1052,1645
est12=AHE208F,1293,1896
est13=CHH272F,1500,2088
est14=SHA820Z,2089,2855
est15=CHF769Z,2092,2858
est16=CHH272Z,2092,2855
est17=AHE208Z,2093,2859
est18=AHB463Z,2102,2854
est19=SHF393Z,2108,2854
est20=AHO559Z,2112,2854
est21=SHK722Z,2153,2854
est22=AHL128Z,2154,2839
est23=AHM652Z,2156,2855
est24=VHE603Z,2157,2834
est25=AHL173Z,2161,2728
est26=AHG216Z,2235,2817
est27=VHG345Z,2293,2854
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2008.11.23 |
| Homology vs DNA |
Query= Contig-U11195-1 (Contig-U11195-1Q) /CSM_Contig/Contig-U11195-1Q.Seq.d
(2868 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 1957 0.0 3
(BJ336270) Dictyostelium discoideum cDNA clone:dda53g07, 5' ... 1358 0.0 1
(BJ394373) Dictyostelium discoideum cDNA clone:dds34j23, 5' ... 1235 0.0 1
(BJ420664) Dictyostelium discoideum cDNA clone:ddv40e02, 5' ... 1229 0.0 1
(BJ421646) Dictyostelium discoideum cDNA clone:ddv43j11, 5' ... 1203 0.0 1
(BJ397126) Dictyostelium discoideum cDNA clone:dds45l05, 5' ... 1197 0.0 1
(BJ332460) Dictyostelium discoideum cDNA clone:dda39o02, 5' ... 1197 0.0 1
(BJ331044) Dictyostelium discoideum cDNA clone:dda33n16, 5' ... 1197 0.0 1
(BJ391763) Dictyostelium discoideum cDNA clone:dds25h06, 5' ... 1178 0.0 1
(BJ338223) Dictyostelium discoideum cDNA clone:dda60f15, 5' ... 1176 0.0 1
(BJ365819) Dictyostelium discoideum cDNA clone:ddc36o18, 5' ... 1168 0.0 1
(BJ333568) Dictyostelium discoideum cDNA clone:dda43o04, 5' ... 735 0.0 2
(BJ380008) Dictyostelium discoideum cDNA clone:ddc36o18, 3' ... 704 0.0 3
(BJ356510) Dictyostelium discoideum cDNA clone:dda60e15, 3' ... 704 0.0 2
(BJ348584) Dictyostelium discoideum cDNA clone:dda33n16, 3' ... 704 0.0 2
(BJ403427) Dictyostelium discoideum cDNA clone:dds25h06, 3' ... 684 0.0 4
(BJ379052) Dictyostelium discoideum cDNA clone:ddc33j17, 3' ... 678 0.0 3
(BJ350235) Dictyostelium discoideum cDNA clone:dda39o02, 3' ... 676 0.0 3
(BJ406320) Dictyostelium discoideum cDNA clone:dds34j23, 3' ... 672 0.0 2
(BJ354344) Dictyostelium discoideum cDNA clone:dda53g07, 3' ... 636 0.0 3
(BJ408236) Dictyostelium discoideum cDNA clone:dds45l05, 3' ... 597 0.0 4
(BJ355364) Dictyostelium discoideum cDNA clone:dda56g14, 3' ... 597 0.0 3
(BJ439306) Dictyostelium discoideum cDNA clone:ddv40e02, 3' ... 573 0.0 3
(BJ354471) Dictyostelium discoideum cDNA clone:dda53a19, 3' ... 535 0.0 2
(BJ358229) Dictyostelium discoideum cDNA clone:dda43o04, 3' ... 573 0.0 3
(BJ440336) Dictyostelium discoideum cDNA clone:ddv43j11, 3' ... 597 0.0 3
(BJ364960) Dictyostelium discoideum cDNA clone:ddc33j17, 5' ... 777 0.0 2
(AU264146) Dictyostelium discoideum vegetative cDNA clone:VS... 632 0.0 2
(AU264147) Dictyostelium discoideum vegetative cDNA clone:VS... 632 0.0 2
(BJ323718) Dictyostelium discoideum cDNA clone:dda11n21, 5' ... 60 5e-16 6
(AC014489) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 48 0.21 2
(AF362369) Dictyostelium discoideum histidine kinase DhkG (d... 40 0.27 5
(DX499492) Cpl41444 Papaya Genomic DNA BAC Library Carica pa... 34 0.35 2
(ED791872) GM_WBb0175H13.f GM_WBb Glycine max genomic clone ... 40 0.36 3
(AC125744) Rattus norvegicus clone CH230-11P6, WORKING DRAFT... 50 0.47 1
(AC096934) Rattus norvegicus clone CH230-153J12, WORKING DRA... 50 0.47 1
(EH014477) USDA-FP_187174 Lysiphlebus testaceipes adult whol... 40 0.90 2
(AL658925) Xenopus tropicalis EST, clone TNeu046p15 5'. 34 1.1 3
(BQ884578) AGENCOURT_8755810 NIH_MGC_130 Mus musculus cDNA c... 44 1.4 2
(CR847958) Zebrafish DNA sequence from clone CH211-203L23 in... 48 1.9 1
(CR383672) Zebrafish DNA sequence from clone DKEY-11P10 in l... 48 1.9 1
(AC183767) Pan troglodytes BAC clone CH251-373L9 from chromo... 48 1.9 1
(AE014298) Drosophila melanogaster chromosome X, complete se... 48 1.9 1
(AC104608) Drosophila melanogaster X BAC RP98-35A18 (Roswell... 48 1.9 1
(AC104606) Drosophila melanogaster X BAC RP98-26L11 (Roswell... 48 1.9 1
(AC018692) Homo sapiens BAC clone RP11-555K2 from 4, complet... 48 1.9 1
(AC140880) Homo sapiens chromosome 16 clone RP11-1332I15, WO... 48 1.9 1
(AC097651) Homo sapiens chromosome 4 clone RP11-130F6, WORKI... 48 1.9 1
(AC027205) Homo sapiens chromosome 1 clone RP11-130F6 map 1,... 48 1.9 1
(AC011732) Homo sapiens clone RP11-17O11, WORKING DRAFT SEQU... 48 1.9 1
(ER752946) SB_BBc36-B12.F SB_BBc Sorghum bicolor genomic 5',... 48 1.9 1
(EJ604090) 1092961216910 Global-Ocean-Sampling_GS-29-01-01-1... 48 1.9 1
(EJ583293) 1092960193390 Global-Ocean-Sampling_GS-29-01-01-1... 48 1.9 1
(ED003141) CHORI103-60A9.TV CHORI103 Schistosoma mansoni gen... 48 1.9 1
(DN269120) LIB30321_051_E01_SP6_1 LIB30321 Canis lupus famil... 48 1.9 1
(CT781683) Paramecium tetraurelia 5-PRIME EST from clone LK0... 48 1.9 1
(BI984301) fu11d05.x3 Campbell zebrafish ovary Danio rerio c... 48 1.9 1
(EX209577) SGT18b1_C06 library_18: tammar wallaby mammary ti... 48 1.9 1
(EX201054) SGT20r4_B09 normalized library from a mix of tamm... 48 1.9 1
(CX494250) JGI_XZG36915.rev NIH_XGC_tropGas7 Xenopus (Silura... 34 3.5 3
(AC098446) Rattus norvegicus clone CH230-1M23, WORKING DRAFT... 36 3.5 2
(AC098263) Rattus norvegicus clone CH230-1K5, *** SEQUENCING... 36 3.6 2
(AL658837) Xenopus tropicalis EST, clone TNeu046o15 5'. 34 3.8 3
(BZ205183) CH230-474H16.TJ CHORI-230 Segment 2 Rattus norveg... 36 4.8 2
(CX417519) JGI_XZG65011.rev NIH_XGC_tropGas7 Xenopus (Silura... 34 4.8 3
(CG140295) PUFRS61TB ZM_0.6_1.0_KB Zea mays genomic clone ZM... 36 4.9 2
(ER426872) 1092963756494 Global-Ocean-Sampling_GS-35-01-01-1... 38 5.5 3
(AC181627) Strongylocentrotus purpuratus clone R3-1105J13, W... 42 6.6 7
(BX701051) Xenopus tropicalis EST, clone TNeu132l15 3'. 34 6.9 3
(DD391816) Method and nucleic acids for the improved treatme... 36 7.3 4
(DD209173) test. 36 7.3 4
(DD061412) Methods and nucleic acids for the analysis of he... 36 7.3 4
(CS250583) Sequence 127 from Patent WO2005123945. 36 7.3 4
(CQ807072) Sequence 522 from Patent WO2004035803. 36 7.3 4
(AX826010) Sequence 262 from Patent WO03072821. 36 7.3 4
(AX822370) Sequence 262 from Patent EP1340818. 36 7.3 4
(AX795850) Sequence 193 from Patent WO03052135. 36 7.3 4
(AX767490) Sequence 138 from Patent WO03044226. 36 7.3 4
(AX598974) Sequence 314 from Patent WO02077272. 36 7.3 4
(CT027701) Zebrafish DNA sequence from clone CH211-209D1 in ... 46 7.4 1
(BX950211) Zebrafish DNA sequence from clone DKEY-57M14 in l... 46 7.4 1
(BX000362) Zebrafish DNA sequence from clone DKEYP-93D12 in ... 46 7.4 1
(AC197934) MACACA MULATTA BAC clone CH250-392N20 from chromo... 46 7.4 1
(AP006107) Lotus japonicus genomic DNA, chromosome 1, clone:... 46 7.4 1
(AF034617) Spinacia oleracea cytosolic heat shock 70 protein... 46 7.4 1
(AF034616) Spinacia oleracea cytosolic heat shock 70 protein... 46 7.4 1
(AF127462) Simulium vorax 16S ribosomal RNA gene, partial se... 46 7.4 1
(AL357793) Human DNA sequence from clone RP11-98G13 on chrom... 46 7.4 1
(AC144472) Felis catus clone RP86-241E22, WORKING DRAFT SEQU... 46 7.4 1
(AC140969) Canis familiaris clone RP81-197A18, WORKING DRAFT... 46 7.4 1
(AC140667) Canis familiaris clone RP81-292C20, WORKING DRAFT... 46 7.4 1
(CU862011) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 7.4 1
(CT027610) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 7.4 1
(AP007809) Lotus japonicus genomic DNA, chromosome 1, clone:... 46 7.4 1
(AP007797) Lotus japonicus genomic DNA, chromosome 1, clone:... 46 7.4 1
(AC229735) Medicago truncatula clone mth2-36n12, WORKING DRA... 46 7.4 1
(AC224874) Bos taurus clone CH240-474F23, WORKING DRAFT SEQU... 46 7.4 1
(EK035987) 1092959452853 Global-Ocean-Sampling_GS-31-01-01-1... 46 7.4 1
(DU411701) 1098415674287 CHORI-243 Ovis aries genomic clone ... 46 7.4 1
(DU179653) 1098553493657 CHORI-243 Ovis aries genomic clone ... 46 7.4 1
>(AC116957) Dictyostelium discoideum chromosome 2 map 1685067-2090751
strain AX4, complete sequence.
Length = 405682
Score = 1957 bits (987), Expect(3) = 0.0
Identities = 987/987 (100%)
Strand = Plus / Minus
Query: 379 gaatagaacatcattgaatgatggtttggatagtttattagtggatagtgccgtagatat 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331435 gaatagaacatcattgaatgatggtttggatagtttattagtggatagtgccgtagatat 331376
Query: 439 ccttgataccaatgcaagagaacgtggtaatttggcaggttgtaatgcaattttcattca 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331375 ccttgataccaatgcaagagaacgtggtaatttggcaggttgtaatgcaattttcattca 331316
Query: 499 tattaaaaatgccccaacttcaccagttagtccagatgttgttgatatttgtcaacatca 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331315 tattaaaaatgccccaacttcaccagttagtccagatgttgttgatatttgtcaacatca 331256
Query: 559 tatggtattatataaaatgggattcaaacttttagactttgatttctatataccaccatt 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331255 tatggtattatataaaatgggattcaaacttttagactttgatttctatataccaccatt 331196
Query: 619 ggattttcattcagcaccaaagaaaatgatgttaggtttattcattacaccattgatccc 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331195 ggattttcattcagcaccaaagaaaatgatgttaggtttattcattacaccattgatccc 331136
Query: 679 aaaatcaaatgaaaaaggtgatcgtccattcattccatcaaatctattgaaattatttgt 738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331135 aaaatcaaatgaaaaaggtgatcgtccattcattccatcaaatctattgaaattatttgt 331076
Query: 739 tgaacttcaatggaataatgcttttggttcagaacaaattaagaattcaccaaataccta 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331075 tgaacttcaatggaataatgcttttggttcagaacaaattaagaattcaccaaataccta 331016
Query: 799 cttggaatatcaacgtatgattgaacaaatagaattacgtgaacgtatttcattatcgga 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331015 cttggaatatcaacgtatgattgaacaaatagaattacgtgaacgtatttcattatcgga 330956
Query: 859 tttaccatgggatgcaggtaaaccatggacattggttgatctatgggaagattatgatca 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330955 tttaccatgggatgcaggtaaaccatggacattggttgatctatgggaagattatgatca 330896
Query: 919 agagttattggaacgtctatacaaagagattatgataccaaacttttcaaataaacacga 978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330895 agagttattggaacgtctatacaaagagattatgataccaaacttttcaaataaacacga 330836
Query: 979 attggaaccattggataattggttacaagcatttacttcagagaatcgtgatgatccaaa 1038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330835 attggaaccattggataattggttacaagcatttacttcagagaatcgtgatgatccaaa 330776
Query: 1039 catttccgatcttcatatactattggcacttagatggagcgataatagttcacaaccaat 1098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330775 catttccgatcttcatatactattggcacttagatggagcgataatagttcacaaccaat 330716
Query: 1099 cattgagggtgttatcatctttgaatatttctctgcaaataattgtggtctattaactta 1158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330715 cattgagggtgttatcatctttgaatatttctctgcaaataattgtggtctattaactta 330656
Query: 1159 tttaatcgttcaaaaaacatttaaaggtaaaggtttggatagaatcctcgtggaaacagc 1218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330655 tttaatcgttcaaaaaacatttaaaggtaaaggtttggatagaatcctcgtggaaacagc 330596
Query: 1219 aattgaaatcctaaatcaaaatgcaaagagtcaaggtttccttccaggttgtaatgcaat 1278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330595 aattgaaatcctaaatcaaaatgcaaagagtcaaggtttccttccaggttgtaatgcaat 330536
Query: 1279 ctttttggaggtttacagtggtgaaaaggtaactttgaaacaagatgtagtcgatccacg 1338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330535 ctttttggaggtttacagtggtgaaaaggtaactttgaaacaagatgtagtcgatccacg 330476
Query: 1339 tatgagacattccatctatcatcaaat 1365
|||||||||||||||||||||||||||
Sbjct: 330475 tatgagacattccatctatcatcaaat 330449
Score = 1433 bits (723), Expect(3) = 0.0
Identities = 723/723 (100%)
Strand = Plus / Minus
Query: 1366 tggatttagattgatagatttcgaatatgttgcaccaccattagctttgacttatccaaa 1425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330449 tggatttagattgatagatttcgaatatgttgcaccaccattagctttgacttatccaaa 330390
Query: 1426 gttaaaacatttccttctcacagtttatcttaccgaacatattccaaagatgccattgga 1485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330389 gttaaaacatttccttctcacagtttatcttaccgaacatattccaaagatgccattgga 330330
Query: 1486 ggagggcaaatattatttaccaagtagcgttttaaagaattttatcaccgtcctttggaa 1545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330329 ggagggcaaatattatttaccaagtagcgttttaaagaattttatcaccgtcctttggaa 330270
Query: 1546 gaatgcaattgcaaccaagaaaatcattaaacaaccacaaagagattcagattatgttag 1605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330269 gaatgcaattgcaaccaagaaaatcattaaacaaccacaaagagattcagattatgttag 330210
Query: 1606 aatggtcgaacagtttgagtatcgtgaaaaaataccattgttagatttaccatggggtgc 1665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330209 aatggtcgaacagtttgagtatcgtgaaaaaataccattgttagatttaccatggggtgc 330150
Query: 1666 aagtaaaccatggacattggttgatcttagagacgattatgatgaggatcttatggtacg 1725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330149 aagtaaaccatggacattggttgatcttagagacgattatgatgaggatcttatggtacg 330090
Query: 1726 tttttacaatgagttgatgttaccaaatttcccagtgaaaaatgaattggaaccattatc 1785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330089 tttttacaatgagttgatgttaccaaatttcccagtgaaaaatgaattggaaccattatc 330030
Query: 1786 aaatttcattagtgctctctctgaagagagaagagaatcattcaatccacatttatcaga 1845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330029 aaatttcattagtgctctctctgaagagagaagagaatcattcaatccacatttatcaga 329970
Query: 1846 ggttcatgttttattggcattgagatggccaaccgattcatccgatttacaaccaaccat 1905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329969 ggttcatgttttattggcattgagatggccaaccgattcatccgatttacaaccaaccat 329910
Query: 1906 tggtgctggtattattttcgaatatttttcaaataccaattgtggtttactttcctattt 1965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329909 tggtgctggtattattttcgaatatttttcaaataccaattgtggtttactttcctattt 329850
Query: 1966 ggtggtacatcgttcttcaagaggtcaaggtttggctggtattttggttgaacgtgcagt 2025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329849 ggtggtacatcgttcttcaagaggtcaaggtttggctggtattttggttgaacgtgcagt 329790
Query: 2026 ggaactattggataaacatgcaaaaactcgtggtcaattggctggttgtaactgtatttt 2085
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329789 ggaactattggataaacatgcaaaaactcgtggtcaattggctggttgtaactgtatttt 329730
Query: 2086 ctt 2088
|||
Sbjct: 329729 ctt 329727
Score = 735 bits (371), Expect(3) = 0.0
Identities = 371/371 (100%)
Strand = Plus / Minus
Query: 1 agcattggaacaaatcgaattacgtgaaaagataccattgttagatttaccatggggtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331813 agcattggaacaaatcgaattacgtgaaaagataccattgttagatttaccatggggtgc 331754
Query: 61 aggtaaaccatggacattagttgacctctatgaggattatgatgaagaattattggaacg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331753 aggtaaaccatggacattagttgacctctatgaggattatgatgaagaattattggaacg 331694
Query: 121 ttgttatagagaagtcatggtaccaagtgtgaaacatagtgaaattccttcacttggtaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331693 ttgttatagagaagtcatggtaccaagtgtgaaacatagtgaaattccttcacttggtaa 331634
Query: 181 cgttttaagggcaatgtctcccgagggtgatgattcatcctatctaccagatgttcatgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331633 cgttttaagggcaatgtctcccgagggtgatgattcatcctatctaccagatgttcatgt 331574
Query: 241 ccttttagcagtacgttggccaactgatttccataaggatggcaattcatcatcgccaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331573 ccttttagcagtacgttggccaactgatttccataaggatggcaattcatcatcgccaat 331514
Query: 301 catcgatggtctttgtgttttcgaatatcataccgaacaaaattgtggaatactcactca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331513 catcgatggtctttgtgttttcgaatatcataccgaacaaaattgtggaatactcactca 331454
Query: 361 tttaattttac 371
|||||||||||
Sbjct: 331453 tttaattttac 331443
Score = 684 bits (345), Expect(12) = 0.0
Identities = 345/345 (100%)
Strand = Plus / Minus
Query: 2099 ctattgactccacgtattccaaagcatggtgttggtagtgaaattcaaccatttgtacca 2158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328765 ctattgactccacgtattccaaagcatggtgttggtagtgaaattcaaccatttgtacca 328706
Query: 2159 tcttctttgttacgttcattcattacaactctatgggaagatgaatgtggtttaattggt 2218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328705 tcttctttgttacgttcattcattacaactctatgggaagatgaatgtggtttaattggt 328646
Query: 2219 tataactttgaatctgatccatgttaccttagaatgatggaacaattggatggtaatgat 2278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328645 tataactttgaatctgatccatgttaccttagaatgatggaacaattggatggtaatgat 328586
Query: 2279 tatttccattgtttagatttaccttggattaaacatagaatcgatcaaaattcaatcaat 2338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328585 tatttccattgtttagatttaccttggattaaacatagaatcgatcaaaattcaatcaat 328526
Query: 2339 ccaaataattccactctaccacatataaacttttcaaattcttttaataatttaaatatt 2398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328525 ccaaataattccactctaccacatataaacttttcaaattcttttaataatttaaatatt 328466
Query: 2399 agttattcatcaccaaatcctgtacatttaagagattttaaaaat 2443
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328465 agttattcatcaccaaatcctgtacatttaagagattttaaaaat 328421
Score = 632 bits (319), Expect(12) = 0.0
Identities = 319/319 (100%)
Strand = Plus / Minus
Query: 2510 ttgacagctggtactaatttaggtggtaatagtttaaattcaagtggtagtatttataat 2569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328354 ttgacagctggtactaatttaggtggtaatagtttaaattcaagtggtagtatttataat 328295
Query: 2570 aatagcggcgataaaaaatcatcactaccaccattaccaaatccaaataaccttagtaat 2629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328294 aatagcggcgataaaaaatcatcactaccaccattaccaaatccaaataaccttagtaat 328235
Query: 2630 aattatgatagtgatcatcttacaaagaataaaaatttattaaaagtttcaacaccagat 2689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328234 aattatgatagtgatcatcttacaaagaataaaaatttattaaaagtttcaacaccagat 328175
Query: 2690 ggcaatagttcctctgctcctggttcaccaattttatctcctcaatcaatgaattcagtt 2749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328174 ggcaatagttcctctgctcctggttcaccaattttatctcctcaatcaatgaattcagtt 328115
Query: 2750 ttcccaccaaacgctcctttatcacctgctctttatccttcaaatttaagtaattcaaca 2809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328114 ttcccaccaaacgctcctttatcacctgctctttatccttcaaatttaagtaattcaaca 328055
Query: 2810 ttggcccaaagagttacat 2828
|||||||||||||||||||
Sbjct: 328054 ttggcccaaagagttacat 328036
Score = 83.8 bits (42), Expect(12) = 0.0
Identities = 69/78 (88%)
Strand = Plus / Minus
Query: 44 gatttaccatggggtgcaggtaaaccatggacattagttgacctctatgaggattatgat 103
||||||||||||| ||||||||||||||||||||| ||||| || | || |||||||||
Sbjct: 330957 gatttaccatgggatgcaggtaaaccatggacattggttgatctatgggaagattatgat 330898
Query: 104 gaagaattattggaacgt 121
|||| ||||||||||||
Sbjct: 330897 caagagttattggaacgt 330880
Score = 73.8 bits (37), Expect(12) = 0.0
Identities = 37/37 (100%)
Strand = Plus / Minus
Query: 2828 tggataaataaattataaataatgtataaaatcattc 2864
|||||||||||||||||||||||||||||||||||||
Sbjct: 328035 tggataaataaattataaataatgtataaaatcattc 327999
Score = 71.9 bits (36), Expect(12) = 0.0
Identities = 42/44 (95%)
Strand = Plus / Minus
Query: 857 gatttaccatgggatgcaggtaaaccatggacattggttgatct 900
||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 330166 gatttaccatggggtgcaagtaaaccatggacattggttgatct 330123
Score = 60.0 bits (30), Expect(12) = 0.0
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 893 gttgatctatgggaagattatgatcaagagttattgga 930
||||| || |||||||||||||||||||||||||||||
Sbjct: 329320 gttgacctttgggaagattatgatcaagagttattgga 329283
Score = 38.2 bits (19), Expect(12) = 0.0
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 1024 tcgtgatgatccaaacatttccgatcttcat 1054
|||||||||||| || |||| ||||||||||
Sbjct: 329189 tcgtgatgatcctaatatttgcgatcttcat 329159
Score = 34.2 bits (17), Expect(12) = 0.0
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 8 gaacaaatcgaattacgtgaa 28
|||||||| ||||||||||||
Sbjct: 330993 gaacaaatagaattacgtgaa 330973
Score = 32.2 bits (16), Expect(12) = 0.0
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 474 caggttgtaatgcaat 489
||||||||||||||||
Sbjct: 330551 caggttgtaatgcaat 330536
Score = 30.2 bits (15), Expect(12) = 0.0
Identities = 21/23 (91%)
Strand = Plus / Minus
Query: 1265 ggttgtaatgcaatctttttgga 1287
|||||||||||||| || |||||
Sbjct: 328939 ggttgtaatgcaattttcttgga 328917
Score = 26.3 bits (13), Expect(12) = 0.0
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 1233 atcaaaatgcaaa 1245
|||||||||||||
Sbjct: 328971 atcaaaatgcaaa 328959
Score = 26.3 bits (13), Expect(12) = 0.0
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 1180 taaaggtaaaggt 1192
|||||||||||||
Sbjct: 329126 taaaggtaaaggt 329114
Score = 83.8 bits (42), Expect(18) = 1e-25
Identities = 69/78 (88%)
Strand = Plus / Minus
Query: 857 gatttaccatgggatgcaggtaaaccatggacattggttgatctatgggaagattatgat 916
||||||||||||| ||||||||||||||||||||| ||||| || | || |||||||||
Sbjct: 331770 gatttaccatggggtgcaggtaaaccatggacattagttgacctctatgaggattatgat 331711
Query: 917 caagagttattggaacgt 934
|||| ||||||||||||
Sbjct: 331710 gaagaattattggaacgt 331693
Score = 58.0 bits (29), Expect(18) = 1e-25
Identities = 65/77 (84%)
Strand = Plus / Minus
Query: 1317 aacaagatgtagtcgatccacgtatgagacattccatctatcatcaaattggatttagat 1376
|||||||||| | |||||||||||||||||| | |||||| || |||| || || |||
Sbjct: 329694 aacaagatgttatggatccacgtatgagacatactatctattataaaatgggtttcagaa 329635
Query: 1377 tgatagatttcgaatat 1393
|||| ||||||||||||
Sbjct: 329634 tgatcgatttcgaatat 329618
Score = 46.1 bits (23), Expect(18) = 1e-25
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 463 tggtaatttggcaggttgtaatgcaattttc 493
|||| |||| |||||||||||||||||||||
Sbjct: 332374 tggtcatttagcaggttgtaatgcaattttc 332344
Score = 34.2 bits (17), Expect(18) = 1e-25
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 821 gaacaaatagaattacgtgaa 841
|||||||| ||||||||||||
Sbjct: 331806 gaacaaatcgaattacgtgaa 331786
Score = 32.2 bits (16), Expect(18) = 1e-25
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1649 gatttaccatggggtg 1664
||||||||||||||||
Sbjct: 329356 gatttaccatggggtg 329341
Score = 32.2 bits (16), Expect(18) = 1e-25
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1263 caggttgtaatgcaat 1278
||||||||||||||||
Sbjct: 331340 caggttgtaatgcaat 331325
Score = 30.2 bits (15), Expect(18) = 1e-25
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 2369 ttttcaaattctttt 2383
|||||||||||||||
Sbjct: 109992 ttttcaaattctttt 109978
Score = 30.2 bits (15), Expect(18) = 1e-25
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1694 agagacgattatgat 1708
|||||||||||||||
Sbjct: 289560 agagacgattatgat 289546
Score = 28.2 bits (14), Expect(18) = 1e-25
Identities = 20/22 (90%)
Strand = Plus / Minus
Query: 2838 aattataaataatgtataaaat 2859
||||||||||||| | ||||||
Sbjct: 28313 aattataaataatctttaaaat 28292
Score = 28.2 bits (14), Expect(18) = 1e-25
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 2631 attatgatagtgat 2644
||||||||||||||
Sbjct: 87663 attatgatagtgat 87650
Score = 28.2 bits (14), Expect(18) = 1e-25
Identities = 20/22 (90%)
Strand = Plus / Minus
Query: 2565 ataataatagcggcgataaaaa 2586
|||||||| ||||||||||||
Sbjct: 94651 ataataatgacggcgataaaaa 94630
Score = 28.2 bits (14), Expect(18) = 1e-25
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 1780 attatcaaatttca 1793
||||||||||||||
Sbjct: 118954 attatcaaatttca 118941
Score = 28.2 bits (14), Expect(18) = 1e-25
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 1771 attggaaccattat 1784
||||||||||||||
Sbjct: 152747 attggaaccattat 152734
Score = 28.2 bits (14), Expect(18) = 1e-25
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 292 atcgccaatcatcg 305
||||||||||||||
Sbjct: 339969 atcgccaatcatcg 339956
Score = 26.3 bits (13), Expect(18) = 1e-25
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 2827 atggataaataaa 2839
|||||||||||||
Sbjct: 43545 atggataaataaa 43533
Score = 26.3 bits (13), Expect(18) = 1e-25
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 2671 aaaagtttcaaca 2683
|||||||||||||
Sbjct: 79388 aaaagtttcaaca 79376
Score = 26.3 bits (13), Expect(18) = 1e-25
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 2332 aatcaatccaaat 2344
|||||||||||||
Sbjct: 116681 aatcaatccaaat 116669
Score = 26.3 bits (13), Expect(18) = 1e-25
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 168 cttcacttggtaa 180
|||||||||||||
Sbjct: 349177 cttcacttggtaa 349165
Score = 99.6 bits (50), Expect = 6e-16
Identities = 59/62 (95%)
Strand = Plus / Minus
Query: 23 cgtgaaaagataccattgttagatttaccatggggtgcaggtaaaccatggacattagtt 82
|||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct: 330187 cgtgaaaaaataccattgttagatttaccatggggtgcaagtaaaccatggacattggtt 330128
Query: 83 ga 84
||
Sbjct: 330127 ga 330126
Score = 99.6 bits (50), Expect = 6e-16
Identities = 59/62 (95%)
Strand = Plus / Minus
Query: 1628 cgtgaaaaaataccattgttagatttaccatggggtgcaagtaaaccatggacattggtt 1687
|||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct: 331791 cgtgaaaagataccattgttagatttaccatggggtgcaggtaaaccatggacattagtt 331732
Query: 1688 ga 1689
||
Sbjct: 331731 ga 331730
Score = 71.9 bits (36), Expect = 1e-07
Identities = 42/44 (95%)
Strand = Plus / Minus
Query: 1649 gatttaccatggggtgcaagtaaaccatggacattggttgatct 1692
||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 330957 gatttaccatgggatgcaggtaaaccatggacattggttgatct 330914
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 3,225,827,613
Number of extensions: 186713233
Number of successful extensions: 14937281
Number of sequences better than 10.0: 108
Length of query: 2868
Length of database: 95,242,211,685
Length adjustment: 25
Effective length of query: 2843
Effective length of database: 97,216,030,006
Effective search space: 276385173307058
Effective search space used: 276385173307058
X1: 11 (21.8 bits)
S2: 23 (46.1 bits)
|
| protein update |
2009. 6.29 |
| Homology vs Protein |
Query= Contig-U11195-1 (Contig-U11195-1Q) /CSM_Contig/Contig-U11195-1Q.Seq.d
(2868 letters)
Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC116957_116(AC116957|pid:none) Dictyostelium discoideum chromos... 1352 0.0
CP000733_1349(CP000733|pid:none) Coxiella burnetii Dugway 5J108-... 47 0.004
AE016828_504(AE016828|pid:none) Coxiella burnetii RSA 493, compl... 47 0.004
CP000890_605(CP000890|pid:none) Coxiella burnetii RSA 331, compl... 47 0.004
CP001020_1115(CP001020|pid:none) Coxiella burnetii CbuK_Q154, co... 43 0.074
CP000628_323(CP000628|pid:none) Agrobacterium radiobacter K84 ch... 37 3.1
AM444349_1(AM444349|pid:none) Vitis vinifera contig VV78X274483.... 37 5.3
BT064040_1(BT064040|pid:none) Zea mays full-length cDNA clone ZM... 36 9.0
(Q57252) RecName: Full=Uncharacterized protein HI1163; &B64187(... 36 9.0
>AC116957_116(AC116957|pid:none) Dictyostelium discoideum chromosome 2
map 1685067-2090751 strain AX4, complete sequence.
Length = 1752
Score = 1352 bits (3499), Expect = 0.0
Identities = 687/823 (83%), Positives = 705/823 (85%), Gaps = 55/823 (6%)
Frame = +2
Query: 2 ALEQIELREKIPLLDLPWGAGKPWTLVXXXXXXXXXXXXRCYREVMVPSVKHSEIPSLGN 181
ALEQIELREKIPLLDLPWGAGKPWTLV RCYREVMVPSVKHSEIPSLGN
Sbjct: 506 ALEQIELREKIPLLDLPWGAGKPWTLVDLYEDYDEELLERCYREVMVPSVKHSEIPSLGN 565
Query: 182 VLRAMSPEGDDSSYLPDVHVLLAVRWPTDFHKDGNSSSPIIDGLCVFEYHTEQNCGILTH 361
VLRAMSPEGDDSSYLPDVHVLLAVRWPTDFHKDGNSSSPIIDGLCVFEYHTEQNCGILTH
Sbjct: 566 VLRAMSPEGDDSSYLPDVHVLLAVRWPTDFHKDGNSSSPIIDGLCVFEYHTEQNCGILTH 625
Query: 362 LILQKKNRTSLNDGLDSLLVDSAVDILDTNARERGNLAGCNAIFIHIKNAPTSPVSPDVV 541
LILQKKNRTSLNDGLDSLLVDSAVDILDTNARERGNLAGCNAIFIHIKNAPTSPVSPDVV
Sbjct: 626 LILQKKNRTSLNDGLDSLLVDSAVDILDTNARERGNLAGCNAIFIHIKNAPTSPVSPDVV 685
Query: 542 DICQHHMVLYKMGFKLLDFDFYIPPLDFHSAPKKMMLGLFITPLIPKSNEKGDRPFIPSN 721
DICQHHMVLYKMGFKLLDFDFYIPPLDFHSAPKKMMLGLFITPLIPKSNEKGDRPFIPSN
Sbjct: 686 DICQHHMVLYKMGFKLLDFDFYIPPLDFHSAPKKMMLGLFITPLIPKSNEKGDRPFIPSN 745
Query: 722 LLKLFVELQWNNAFGSEQIKNSPNTYLEYQRMIEQIELRERISLSDLPWDAGKPWTLVDL 901
LLKLFVELQWNNAFGSEQIKNSPNTYLEYQRMIEQIELRERISLSDLPWDAGKPWTLVDL
Sbjct: 746 LLKLFVELQWNNAFGSEQIKNSPNTYLEYQRMIEQIELRERISLSDLPWDAGKPWTLVDL 805
Query: 902 WEDYDQELLERLYKEIMIPNFSNKHELEPLDNWLQAFTSENRDDPNISDLHILLALRWSD 1081
WEDYDQELLERLYKEIMIPNFSNKHELEPLDNWLQAFTSENRDDPNISDLHILLALRWSD
Sbjct: 806 WEDYDQELLERLYKEIMIPNFSNKHELEPLDNWLQAFTSENRDDPNISDLHILLALRWSD 865
Query: 1082 NSSQPIIEGVIIFEYFSANNCGLLTYLIVQKTFKGKGLDRILVETAIEILNQNAKSQGFL 1261
NSSQPIIEGVIIFEYFSANNCGLLTYLIVQKTFKGKGLDRILVETAIEILNQNAKSQGFL
Sbjct: 866 NSSQPIIEGVIIFEYFSANNCGLLTYLIVQKTFKGKGLDRILVETAIEILNQNAKSQGFL 925
Query: 1262 PGCNAIFLEVYSGEKVTLKQDVVDPRMRHSIYHQIGFRLIDFEYVAPPLALTYPKLKHFL 1441
PGCNAIFLEVYSGEKVTLKQDVVDP FEYVAPPLALTYPKLKHFL
Sbjct: 926 PGCNAIFLEVYSGEKVTLKQDVVDPH---------------FEYVAPPLALTYPKLKHFL 970
Query: 1442 LTVYLTEHIPKMPLEEGKYYLPSSVLKNFITVLWKNAIATKKIIKQPQRDSDYVRMVEQF 1621
LTVYLTEHIPKMPLEEGKYYLPSSVLKNFITVLWKNAIATKKIIKQPQRDSDYVRMVEQF
Sbjct: 971 LTVYLTEHIPKMPLEEGKYYLPSSVLKNFITVLWKNAIATKKIIKQPQRDSDYVRMVEQF 1030
Query: 1622 EYREKIPLLDLPWGASKPWTLVDLRDDYDEDLMVRFYNELMLPNFPVKNELEPLSNFISA 1801
EYREKIPLLDLPWGASKPWTLVDLRDDYDEDLMVRFYNELMLPNFPVKNELEPLSNFISA
Sbjct: 1031 EYREKIPLLDLPWGASKPWTLVDLRDDYDEDLMVRFYNELMLPNFPVKNELEPLSNFISA 1090
Query: 1802 LSEERRESFNPHLSEVHVLLALRWPTDSSDLQPTIGAGIIFEYFSNTNCGLLSYLVVHRS 1981
LSEERRESFNPHLSEVHVLLALRWPTDSSDLQPTIGAGIIFEYFSNTNCGLLSYLVVHRS
Sbjct: 1091 LSEERRESFNPHLSEVHVLLALRWPTDSSDLQPTIGAGIIFEYFSNTNCGLLSYLVVHRS 1150
Query: 1982 SRGQGLAGILVERAVELLDKHAKTRGQLAGCNCIF----------XXXXLLTPRI----- 2116
SRGQGLAGILVERAVELLDKHAKTRGQLAGCNCIF ++ PR+
Sbjct: 1151 SRGQGLAGILVERAVELLDKHAKTRGQLAGCNCIFLETNSAEKVTVQQDVMDPRMRHTIY 1210
Query: 2117 --------------------------------------PKHGVGSEIQPFVPSSLLRSFI 2182
P V + Q ++P+ LL++FI
Sbjct: 1211 YKMGFRMIDFEYIMPPLFQGFEKLRGVLLLTVYLTPHIPYQDVNGKKQYYLPNVLLKNFI 1270
Query: 2183 TTLWED--ECGLIGYNFESDPCYLRMMEQLDGNDYFHCLDLPW 2305
++ WE+ + D + ++QL+ + LDLPW
Sbjct: 1271 SSQWENAFRNSRLSVRPSQDIDFTMSLDQLEIRERVPLLDLPW 1313
Score = 918 bits (2372), Expect = 0.0
Identities = 491/998 (49%), Positives = 633/998 (63%), Gaps = 57/998 (5%)
Frame = +2
Query: 5 LEQIELREKIPLLDLPWGAGKPWTLVXXXXXXXXXXXXRCYREVMVPSVKHS-EIPSLGN 181
+EQIELRE+I L DLPW AGKPWTLV R Y+E+M+P+ + E+ L N
Sbjct: 778 IEQIELRERISLSDLPWDAGKPWTLVDLWEDYDQELLERLYKEIMIPNFSNKHELEPLDN 837
Query: 182 VLRAMSPEGDDSSYLPDVHVLLAVRWPTDFHKDGNSSSPIIDGLCVFEYHTEQNCGILTH 361
L+A + E D + D+H+LLA+RW NSS PII+G+ +FEY + NCG+LT+
Sbjct: 838 WLQAFTSENRDDPNISDLHILLALRW------SDNSSQPIIEGVIIFEYFSANNCGLLTY 891
Query: 362 LILQKKNRTSLNDGLDSLLVDSAVDILDTNARERGNLAGCNAIFIHIKNAPTSPVSPDVV 541
LI+QK T GLD +LV++A++IL+ NA+ +G L GCNAIF+ + + + DVV
Sbjct: 892 LIVQK---TFKGKGLDRILVETAIEILNQNAKSQGFLPGCNAIFLEVYSGEKVTLKQDVV 948
Query: 542 DICQHHMVLYKMGFKLLDFDFYIPPLDF-HSAPKKMMLGLFITPLIPKSNEKGDRPFIPS 718
D F++ PPL + K +L +++T IPK + + ++PS
Sbjct: 949 DP---------------HFEYVAPPLALTYPKLKHFLLTVYLTEHIPKMPLEEGKYYLPS 993
Query: 719 NLLKLFVELQWNNAFGSEQIKNSPNTYLEYQRMIEQIELRERISLSDLPWDAGKPWTLVD 898
++LK F+ + W NA +++I P +Y RM+EQ E RE+I L DLPW A KPWTLVD
Sbjct: 994 SVLKNFITVLWKNAIATKKIIKQPQRDSDYVRMVEQFEYREKIPLLDLPWGASKPWTLVD 1053
Query: 899 LWEDYDQELLERLYKEIMIPNFSNKHELEPLDNWLQAFTSENRD--DPNISDLHILLALR 1072
L +DYD++L+ R Y E+M+PNF K+ELEPL N++ A + E R+ +P++S++H+LLALR
Sbjct: 1054 LRDDYDEDLMVRFYNELMLPNFPVKNELEPLSNFISALSEERRESFNPHLSEVHVLLALR 1113
Query: 1073 WSDNSS--QPIIEGVIIFEYFSANNCGLLTYLIVQKTFKGKGLDRILVETAIEILNQNAK 1246
W +SS QP I IIFEYFS NCGLL+YL+V ++ +G+GL ILVE A+E+L+++AK
Sbjct: 1114 WPTDSSDLQPTIGAGIIFEYFSNTNCGLLSYLVVHRSSRGQGLAGILVERAVELLDKHAK 1173
Query: 1247 SQGFLPGCNAIFLEVYSGEKVTLKQDVVDPRMRHSIYHQIGFRLIDFEYVAPPLALTYPK 1426
++G L GCN IFLE S EKVT++QDV+DPRMRH+IY+++GFR+IDFEY+ PPL + K
Sbjct: 1174 TRGQLAGCNCIFLETNSAEKVTVQQDVMDPRMRHTIYYKMGFRMIDFEYIMPPLFQGFEK 1233
Query: 1427 LKH-FLLTVYLTEHIPKMPLEEGK-YYLPSSVLKNFITVLWKNAIATKKIIKQPQRDSDY 1600
L+ LLTVYLT HIP + K YYLP+ +LKNFI+ W+NA ++ +P +D D+
Sbjct: 1234 LRGVLLLTVYLTPHIPYQDVNGKKQYYLPNVLLKNFISSQWENAFRNSRLSVRPSQDIDF 1293
Query: 1601 VRMVEQFEYREKIPLLDLPWGASKPWTLVDLRDDYDEDLMVRFYNELMLPNFPVKNELEP 1780
++Q E RE++PLLDLPWG K W +VDL +DYD++L+ FY + M+ F +ELEP
Sbjct: 1294 TMSLDQLEIRERVPLLDLPWGDGKDWMIVDLWEDYDQELLDAFYKKYMITQFGTSDELEP 1353
Query: 1781 LSNFISALSEERRESFNPHLSEVHVLLALRWPTDSSDL-QPTIGAGIIFEYFSNTNCGLL 1957
L N+ ALS E R+ +P++ ++HVLL L P + I G++FEY+ TN L+
Sbjct: 1354 LENWHKALSTEGRD--DPNICDLHVLLTLGLPGEHKGKGHKYIIGGLVFEYYPETNTALV 1411
Query: 1958 SYLVVHRSSRGQGLAGILVERAVELLDKHAKTRGQLAGCNCIF----------------- 2086
+YLVV++ G+G+ L+ R + +LD++AK +G +AGCN IF
Sbjct: 1412 TYLVVNQRWSGKGIGTDLILRTLTILDQNAKQKGHIAGCNAIFLEVMFLPQSGESDSSLS 1471
Query: 2087 -------------------------------XXXXLLTPRIPKHGVGSEIQPFVPSSLLR 2173
LLTPRIPKHGVGSEIQPFVPSSLLR
Sbjct: 1472 HVFLFNKGFRLLDFEYYQPPTSLRNPKSNNVCLTVLLTPRIPKHGVGSEIQPFVPSSLLR 1531
Query: 2174 SFITTLWEDECGLIGYNFESDPCYLRMMEQLDGNDYFHCLDLPWIKHRIDQNSINPNNST 2353
SFITTLWEDECGLIGYNFESDPCYLRMMEQLDGNDYFHCLDLPWIKHRIDQNSINPNNST
Sbjct: 1532 SFITTLWEDECGLIGYNFESDPCYLRMMEQLDGNDYFHCLDLPWIKHRIDQNSINPNNST 1591
Query: 2354 LPHXXXXXXXXXXXXXXXXPNPVHLRDFKNXXXXXXXXXXXXXXXXXXXXXXLTAXXXXX 2533
LPH PNPVHLRDFKN LTA
Sbjct: 1592 LPHINFSNSFNNLNISYSSPNPVHLRDFKNQQQQQQQQQVQQLQQQVQKVQQLTAGTNLG 1651
Query: 2534 XXXXXXXXXXXXXXXDKKXXXXXXXXXXXXXXXYDSDHLTKNKNLLKVSTPDGNSSSAPG 2713
DKK YDSDHLTKNKNLLKVSTPDGNSSSAPG
Sbjct: 1652 GNSLNSSGSIYNNSGDKKSSLPPLPNPNNLSNNYDSDHLTKNKNLLKVSTPDGNSSSAPG 1711
Query: 2714 SPILSPQSMNSVFPPNAPLSPALYPSNLSNSTLAQRVT 2827
SPILSPQSMNSVFPPNAPLSPALYPSNLSNSTLAQRVT
Sbjct: 1712 SPILSPQSMNSVFPPNAPLSPALYPSNLSNSTLAQRVT 1749
Score = 498 bits (1282), Expect = e-139
Identities = 269/638 (42%), Positives = 401/638 (62%), Gaps = 49/638 (7%)
Frame = +2
Query: 539 VDICQHHMVLYKMGFKLLDFDFYIPPLDFHSAPKKMMLGLFITPLIP-KSNEKGDRPFIP 715
+D Q H +L+K+GF+L+DFD+ PL ++L ++++P IP +S+ GD+ ++P
Sbjct: 413 IDPRQQHSILHKIGFRLVDFDYTKLPLKRLGKSNNLLLTVYLSPHIPSQSSLDGDKYYLP 472
Query: 716 SNLLKLFVELQWNNAFGSEQIKNSPNTYLEYQRMIEQIELRERISLSDLPWDAGKPWTLV 895
S LLK FV W+ ++ +E++ P+ EY R +EQIELRE+I L DLPW AGKPWTLV
Sbjct: 473 SVLLKNFVYDLWDTSYLTEKVNRKPDEDPEYGRALEQIELREKIPLLDLPWGAGKPWTLV 532
Query: 896 DLWEDYDQELLERLYKEIMIPNFSNKHELEPLDNWLQAFTSENRDDPNISDLHILLALRW 1075
DL+EDYD+ELLER Y+E+M+P+ + E+ L N L+A + E D + D+H+LLA+RW
Sbjct: 533 DLYEDYDEELLERCYREVMVPSVKHS-EIPSLGNVLRAMSPEGDDSSYLPDVHVLLAVRW 591
Query: 1076 ------SDNSSQPIIEGVIIFEYFSANNCGLLTYLIVQK---TFKGKGLDRILVETAIEI 1228
NSS PII+G+ +FEY + NCG+LT+LI+QK T GLD +LV++A++I
Sbjct: 592 PTDFHKDGNSSSPIIDGLCVFEYHTEQNCGILTHLILQKKNRTSLNDGLDSLLVDSAVDI 651
Query: 1229 LNQNAKSQGFLPGCNAIFLEVYSGEKVTLKQDVVDPRMRHSIYHQIGFRLIDFEYVAPPL 1408
L+ NA+ +G L GCNAIF+ + + + DVVD H + +++GF+L+DF++ PPL
Sbjct: 652 LDTNARERGNLAGCNAIFIHIKNAPTSPVSPDVVDICQHHMVLYKMGFKLLDFDFYIPPL 711
Query: 1409 ALTYPKLKHFLLTVYLTEHIPKMPLEEGKYYLPSSVLKNFITVLWKNAIATKKIIKQPQR 1588
+ K +L +++T IPK + + ++PS++LK F+ + W NA +++I P
Sbjct: 712 DF-HSAPKKMMLGLFITPLIPKSNEKGDRPFIPSNLLKLFVELQWNNAFGSEQIKNSPNT 770
Query: 1589 DSDYVRMVEQFEYREKIPLLDLPWGASKPWTLVDLRDDYDEDLMVRFYNELMLPNFPVKN 1768
+Y RM+EQ E RE+I L DLPW A KPWTLVDL +DYD++L+ R Y E+M+PNF K+
Sbjct: 771 YLEYQRMIEQIELRERISLSDLPWDAGKPWTLVDLWEDYDQELLERLYKEIMIPNFSNKH 830
Query: 1769 ELEPLSNFISALSEERRESFNPHLSEVHVLLALRWPTDSSDLQPTIGAGIIFEYFSNTNC 1948
ELEPL N++ A + E R+ +P++S++H+LLALRW +SS QP I IIFEYFS NC
Sbjct: 831 ELEPLDNWLQAFTSENRD--DPNISDLHILLALRWSDNSS--QPIIEGVIIFEYFSANNC 886
Query: 1949 GLLSYLVVHRSSRGQGLAGILVERAVELLDKHAKTRGQLAGCNCI--------------- 2083
GLL+YL+V ++ +G+GL ILVE A+E+L+++AK++G L GCN I
Sbjct: 887 GLLTYLIVQKTFKGKGLDRILVETAIEILNQNAKSQGFLPGCNAIFLEVYSGEKVTLKQD 946
Query: 2084 ----------------------FXXXXLLTPRIPKHGVGSEIQPFVPSSLLRSFITTLWE 2197
F LT IPK + E + ++PSS+L++FIT LW+
Sbjct: 947 VVDPHFEYVAPPLALTYPKLKHFLLTVYLTEHIPKMPL-EEGKYYLPSSVLKNFITVLWK 1005
Query: 2198 DECGL--IGYNFESDPCYLRMMEQLDGNDYFHCLDLPW 2305
+ I + D Y+RM+EQ + + LDLPW
Sbjct: 1006 NAIATKKIIKQPQRDSDYVRMVEQFEYREKIPLLDLPW 1043
Score = 248 bits (634), Expect = 7e-64
Identities = 153/393 (38%), Positives = 214/393 (54%), Gaps = 64/393 (16%)
Frame = +2
Query: 1319 QDV--VDPRMRHSIYHQIGFRLIDFEYVAPPLALTYPKLKHFLLTVYLTEHIPKMPLEEG 1492
QD+ +DPR +HSI H+IGFRL+DF+Y PL K + LLTVYL+ HIP +G
Sbjct: 408 QDINKIDPRQQHSILHKIGFRLVDFDYTKLPLK-RLGKSNNLLLTVYLSPHIPSQSSLDG 466
Query: 1493 -KYYLPSSVLKNFITVLWKNAIATKKIIKQPQRDSDYVRMVEQFEYREKIPLLDLPWGAS 1669
KYYLPS +LKNF+ LW + T+K+ ++P D +Y R +EQ E REKIPLLDLPWGA
Sbjct: 467 DKYYLPSVLLKNFVYDLWDTSYLTEKVNRKPDEDPEYGRALEQIELREKIPLLDLPWGAG 526
Query: 1670 KPWTLVDLRDDYDEDLMVRFYNELMLPNFPVKNELEPLSNFISALSEERRESFNPHLSEV 1849
KPWTLVDL +DYDE+L+ R Y E+M+P+ +E+ L N + A+S E +S +L +V
Sbjct: 527 KPWTLVDLYEDYDEELLERCYREVMVPSVK-HSEIPSLGNVLRAMSPEGDDS--SYLPDV 583
Query: 1850 HVLLALRWPT----DSSDLQPTIGAGIIFEYFSNTNCGLLSYLVV---HRSSRGQGLAGI 2008
HVLLA+RWPT D + P I +FEY + NCG+L++L++ +R+S GL +
Sbjct: 584 HVLLAVRWPTDFHKDGNSSSPIIDGLCVFEYHTEQNCGILTHLILQKKNRTSLNDGLDSL 643
Query: 2009 LVERAVELLDKHAKTRGQLAGCNCIF--------------------------------XX 2092
LV+ AV++LD +A+ RG LAGCN IF
Sbjct: 644 LVDSAVDILDTNARERGNLAGCNAIFIHIKNAPTSPVSPDVVDICQHHMVLYKMGFKLLD 703
Query: 2093 XXLLTPRIPKHG------VGSEIQPFV------------PSSLLRSFITTLWEDECGLIG 2218
P + H +G I P + PS+LL+ F+ W + G
Sbjct: 704 FDFYIPPLDFHSAPKKMMLGLFITPLIPKSNEKGDRPFIPSNLLKLFVELQWNNAFG--S 761
Query: 2219 YNFESDPC----YLRMMEQLDGNDYFHCLDLPW 2305
++ P Y RM+EQ++ + DLPW
Sbjct: 762 EQIKNSPNTYLEYQRMIEQIELRERISLSDLPW 794
Score = 167 bits (424), Expect = 2e-39
Identities = 107/295 (36%), Positives = 164/295 (55%), Gaps = 6/295 (2%)
Frame = +2
Query: 2 ALEQIELREKIPLLDLPWGAGKPWTLVXXXXXXXXXXXXRCYREVMVPSVKHS-EIPSLG 178
+L+Q+E+RE++PLLDLPWG GK W +V Y++ M+ S E+ L
Sbjct: 1296 SLDQLEIRERVPLLDLPWGDGKDWMIVDLWEDYDQELLDAFYKKYMITQFGTSDELEPLE 1355
Query: 179 NVLRAMSPEGDDSSYLPDVHVLLAVRWPTDFHKDGNSSSPIIDGLCVFEYHTEQNCGILT 358
N +A+S EG D + D+HVLL + P + HK G II GL VFEY+ E N ++T
Sbjct: 1356 NWHKALSTEGRDDPNICDLHVLLTLGLPGE-HK-GKGHKYIIGGL-VFEYYPETNTALVT 1412
Query: 359 HLILQKKNRTSLNDGLDSLLVDSAVDILDTNARERGNLAGCNAIFIHIKNAPTSPVSPDV 538
+L++ N+ G+ + L+ + ILD NA+++G++AGCNAIF+ + P S S
Sbjct: 1413 YLVV---NQRWSGKGIGTDLILRTLTILDQNAKQKGHIAGCNAIFLEVMFLPQSGES--- 1466
Query: 539 VDICQHHMVLYKMGFKLLDFDFYIPPLDFHSAPK--KMMLGLFITPLIPKSNEKGD-RPF 709
D H+ L+ GF+LLDF++Y PP + PK + L + +TP IPK + +PF
Sbjct: 1467 -DSSLSHVFLFNKGFRLLDFEYYQPPTSLRN-PKSNNVCLTVLLTPRIPKHGVGSEIQPF 1524
Query: 710 IPSNLLKLFVELQWNNAFG--SEQIKNSPNTYLEYQRMIEQIELRERISLSDLPW 868
+PS+LL+ F+ W + G ++ P Y RM+EQ++ + DLPW
Sbjct: 1525 VPSSLLRSFITTLWEDECGLIGYNFESDPC----YLRMMEQLDGNDYFHCLDLPW 1575
Score = 79.7 bits (195), Expect = 5e-13
Identities = 33/59 (55%), Positives = 46/59 (77%)
Frame = +2
Query: 1910 AGIIFEYFSNTNCGLLSYLVVHRSSRGQGLAGILVERAVELLDKHAKTRGQLAGCNCIF 2086
AG+IFEY+SN NCGL ++++ + R GL G+LV+RA+E+LDK+A + G LAGCN IF
Sbjct: 270 AGVIFEYYSNINCGLFLHMIIQKKFRNMGLEGLLVKRAIEILDKNAHSHGHLAGCNAIF 328
Score = 77.8 bits (190), Expect = 2e-12
Identities = 40/72 (55%), Positives = 51/72 (70%)
Frame = +2
Query: 1082 NSSQPIIEGVIIFEYFSANNCGLLTYLIVQKTFKGKGLDRILVETAIEILNQNAKSQGFL 1261
N+ II GVI FEY+S NCGL ++I+QK F+ GL+ +LV+ AIEIL++NA S G L
Sbjct: 263 NNRTQIIAGVI-FEYYSNINCGLFLHMIIQKKFRNMGLEGLLVKRAIEILDKNAHSHGHL 321
Query: 1262 PGCNAIFLEVYS 1297
GCNAIF E S
Sbjct: 322 AGCNAIFFETKS 333
Score = 75.9 bits (185), Expect = 8e-12
Identities = 39/76 (51%), Positives = 53/76 (69%)
Frame = +2
Query: 284 NSSSPIIDGLCVFEYHTEQNCGILTHLILQKKNRTSLNDGLDSLLVDSAVDILDTNARER 463
N+ + II G+ +FEY++ NCG+ H+I+QKK R N GL+ LLV A++ILD NA
Sbjct: 263 NNRTQIIAGV-IFEYYSNINCGLFLHMIIQKKFR---NMGLEGLLVKRAIEILDKNAHSH 318
Query: 464 GNLAGCNAIFIHIKNA 511
G+LAGCNAIF K+A
Sbjct: 319 GHLAGCNAIFFETKSA 334
Score = 69.3 bits (168), Expect = 7e-10
Identities = 31/66 (46%), Positives = 46/66 (69%)
Frame = +2
Query: 884 WTLVDLWEDYDQELLERLYKEIMIPNFSNKHELEPLDNWLQAFTSENRDDPNISDLHILL 1063
W VDLW+ YDQ LLER + E++ F N +++PL++W +A + E ++P+I DLHILL
Sbjct: 25 WAFVDLWDKYDQNLLERFWNELVKTTF-NTSDIQPLNDWNKAMSPEAHNNPDIPDLHILL 83
Query: 1064 ALRWSD 1081
A + SD
Sbjct: 84 AFKASD 89
Score = 53.5 bits (127), Expect = 4e-05
Identities = 32/90 (35%), Positives = 54/90 (60%)
Frame = +2
Query: 1676 WTLVDLRDDYDEDLMVRFYNELMLPNFPVKNELEPLSNFISALSEERRESFNPHLSEVHV 1855
W VDL D YD++L+ RF+NEL+ F ++++PL+++ A+S E NP + ++H+
Sbjct: 25 WAFVDLWDKYDQNLLERFWNELVKTTFNT-SDIQPLNDWNKAMSPEAHN--NPDIPDLHI 81
Query: 1856 LLALRWPTDSSDLQPTIGAGIIFEYFSNTN 1945
LLA + +SDL+ + E F+ TN
Sbjct: 82 LLAFK----ASDLETIKNS---TEAFTTTN 104
Score = 35.8 bits (81), Expect = 9.0
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = +2
Query: 71 WTLVXXXXXXXXXXXXRCYREVMVPSVKHSEIPSLGNVLRAMSPEGDDSSYLPDVHVLLA 250
W V R + E++ + S+I L + +AMSPE ++ +PD+H+LLA
Sbjct: 25 WAFVDLWDKYDQNLLERFWNELVKTTFNTSDIQPLNDWNKAMSPEAHNNPDIPDLHILLA 84
Query: 251 VR 256
+
Sbjct: 85 FK 86
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 5,042,342,136
Number of extensions: 112180049
Number of successful extensions: 264600
Number of sequences better than 10.0: 9
Number of HSP's gapped: 264388
Number of HSP's successfully gapped: 25
Length of query: 956
Length of database: 1,040,966,779
Length adjustment: 138
Effective length of query: 818
Effective length of database: 598,775,449
Effective search space: 489798317282
Effective search space used: 489798317282
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
2 |
| VF (FL, S) |
0 |
| AH (FL, L) |
8 |
| AF (FL, S) |
1 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
0 |
| SH (FL, L) |
3 |
| SF (FL, S) |
0 |
| CH (FL, L) |
2 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |