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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U11191-1
Contig ID Contig-U11191-1
Contig update 2002.12.18
Contig sequence 
>Contig-U11191-1 (Contig-U11191-1Q) /CSM_Contig/Contig-U11191-1Q.Seq.d
ATTATAAAATAAAAAAAGATAAATTTTTTAAAAAAAAAAATAAAAAAAAT
AAATAAAAATATNTNTAAATTTAAAATGGATGAATCAATTGATATGGATA
GNGGAAGTGAGGATACTGAAATAAAAGATACAGAAATGAAAGAAGAAACT
CCAAATGAATTACCAAAACCAATTCCTACTTCTACAACAACAACAACAAC
AACAACAACAACAACACCAACATCAACTACTACTACTACAACATCAACAC
CTAAAAGAAAAAGATTAACAGAAGAAGAAAAACAAAAAAGAGAAGATGAA
AAAAAGAAGAGAGAAGAAGATAGAATTAAAAGAGAAGAAGATAAAAAGAA
AAAAGATGAAGAGAAAAAGAAATTAACGGAGGAGAGAGAAATTGAAAAAA
AGAAACGTGATGAAGAGAAAAAGAAACTTTTAGAAGAAAAAGAAATCAAT
CGTAAAAAGAGAGAAGAAGAGGCNGAGAAAAAACGTATTGAAAAAAAGAA
AAAAGAAGANGAGATTGAAAAAAAAAAAGAAG----------ATCAACAA
CNGCAACAGCATCAACAACNGCAACAACAACAACAATNCAGAAAATAATA
ATGAAAATAGTAATAATAGTTTAGAATTTTTAAAAATATTTACAATTCAA
CCATTGGGGTCCATTACCAATTAAATTAGAAAAACCAATTGACCCATTTT
TGGCTTCAAAAGAAGATAGAAGTTTTCCAATCAAAGCATTACCAACATTT
TTATTTATTATGAAAACATATAAATTATCTTTTAAAAAATTGGTTGTAAT
TTTAAAGCGAATTTTCCAAATATTAATCAAAGACAAATTAAGGATATGTT
TGATGAGCATTGTACTTATAGTCATAGAGTTTGGTCATTGAAACCACAGA
GCGAATTAATTTTTGCTCGATCAACAATTGACCCATTATATCCAGTTCCT
AATATTCCAAAACCTTCGCCAACCAAAAAAGAAAAAGAAAAGGAAAAACA
AATGTTCAATATAGGTTCCACAGATCCAAAACTTTCTGGATCACCAAACA
GATCAAAATCAAAAAAGAAACCAAATTCAGCACCAGTTCAAACAAATTCT
TTACTGAATTATTTTACAAAAATTGAACCACCACAACCTTCATCACAACC
ACCAACTCAAACTCCACCACTACAATCTCCATCACTACCATTAGAACAAC
CTTCACCACAATCACAATCACAATCACAATCACCATCACCAAATTCATCA
CAGCAACAATCACCAAAACAAGAAACTTCAACTCCATTAAAGAAATCACG
TAAGAGAACTAAAACTGATGTCGAATTTGGGGAAACATTTGTCCATATTG
AGCCAATTAAGTTTCCNAAACATTAACAAATTTAACATATGTACNACAAA
GTATTCGTAATAAAAAA
Gap gap included
Contig length 1407
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 756357
End point 757767
Strand (PLUS/MINUS) PLUS
Number of clones 4
Number of EST 6
Link to clone list U11191
List of clone(s) 

est1=SFI557F,1,376
est2=AHB424F,4,416
est3=SFL480F,69,533
est4=SFL480Z,534,1025
est5=AHB424Z,631,1299
est6=AHL784Z,870,1409
Translated Amino Acid sequence 
iik*KKINFLKKKIKKINKNXXKFKMDESIDMDXGSEDTEIKDTEMKEETPNELPKPIPT
STTTTTTTTTTTPTSTTTTTTSTPKRKRLTEEEKQKREDEKKKREEDRIKREEDKKKKDE
EKKKLTEEREIEKKKRDEEKKKLLEEKEINRKKREEEAEKKRIEKKKKEXEIEKKKE---

---INNXNSINNXNNNNNXENNNENSNNSLEFLKIFTIQPLGSITN*irktn*pifgfkr
r*kfsnqsitnifiyyeni*iif*kigcnfkanfpninqrqikdmfdehctyshrvwslk
pqselifarstidplypvpnipkpsptkkekekekqmfnigstdpklsgspnrskskkkp
nsapvqtnsllnyftkieppqpssqpptqtpplqspslpleqpspqsqsqsqspspnssq
qqspkqetstplkksrkrtktdvefgetfvhiepikfpkh*qi*hmyxkvfvik
Translated Amino Acid sequence (All Frames) 
Frame A:
iik*KKINFLKKKIKKINKNXXKFKMDESIDMDXGSEDTEIKDTEMKEETPNELPKPIPT
STTTTTTTTTTTPTSTTTTTTSTPKRKRLTEEEKQKREDEKKKREEDRIKREEDKKKKDE
EKKKLTEEREIEKKKRDEEKKKLLEEKEINRKKREEEAEKKRIEKKKKEXEIEKKKE---

---INNXNSINNXNNNNNXENNNENSNNSLEFLKIFTIQPLGSITN*irktn*pifgfkr
r*kfsnqsitnifiyyeni*iif*kigcnfkanfpninqrqikdmfdehctyshrvwslk
pqselifarstidplypvpnipkpsptkkekekekqmfnigstdpklsgspnrskskkkp
nsapvqtnsllnyftkieppqpssqpptqtpplqspslpleqpspqsqsqsqspspnssq
qqspkqetstplkksrkrtktdvefgetfvhiepikfpkh*qi*hmyxkvfvik

Frame B:
l*nkkr*if*kkk*kk*ikixxnlkwmnqliwixevrilk*kiqk*kkklqmnyqnqfll
lqqqqqqqqqqhqhqllllqhqhlkekd*qkkknkkekmkkrrekkielkekkikrkkmk
rkrn*rrreklkkrnvmkrkrnf*kkkksivkrekkrxrknvlkkrkkkxrlkkkkk---

---sttatasttattttxqkiimkiviiv*nf*kylqfnhwgplpiklekpidpflaske
drsfpikalptflfimktyklsfkklvvilkrifqilikdklriclmsivliviefgh*n
hran*flldqqlthyiqflifqnlrqpkkkkkrknkcsi*vpqiqnfldhqtdqnqkrnq
iqhqfkqily*iilqklnhhnlhhnhqlklhhynlhhyh*nnlhhnhnhnhnhhhqihhs
nnhqnkklqlh*rnhvrelklmsnlgkhlsilsqlsfxninkfnicttkys**k

Frame C:
ykikkdkffkkknkknk*kyx*i*ng*in*yg*xk*gy*nkryrnerrnsk*itktnsyf
ynnnnnnnnnntninyyyynint*kkkinrrrktkkrr*kkeerrr*n*krrr*kekr*r
ekeinggern*kket**reketfrrkrnqs*kerrrgxekty*kkekrrxd*kkkr---

---qqxqqhqqxqqqqqxrk***k****frifkniynstigvhyqln*knqlthfwlqkk
ievfqskhyqhfyll*khinyllknwl*f*sefsky*sktn*gyv**alyl*s*slviet
terinfcsinn*piisss*ysktfanqkrkrkgktnvqyrfhrsktfwitkqikikketk
fstssnkfftelfykn*ttttfitttnsnstttisittirttfttitititititkfita
titktrnfnsikeit*en*n*criwgnicpy*an*vsxtltnltyvxqsirnkk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U11191-1 (Contig-U11191-1Q)
/CSM_Contig/Contig-U11191-1Q.Seq.d
         (1417 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U11191-1 (Contig-U11191-1Q) /CSM_Contig/Conti...   765  0.0
Contig-U14255-1 (Contig-U14255-1Q) /CSM_Contig/Conti...    52  2e-06
Contig-U14528-1 (Contig-U14528-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U11806-1 (Contig-U11806-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U14632-1 (Contig-U14632-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U12444-1 (Contig-U12444-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U12241-1 (Contig-U12241-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U11980-1 (Contig-U11980-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U11666-1 (Contig-U11666-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U11154-1 (Contig-U11154-1Q) /CSM_Contig/Conti...    42  0.002

>Contig-U11191-1 (Contig-U11191-1Q) /CSM_Contig/Contig-U11191-1Q.Seq.d
          Length = 1417

 Score =  765 bits (386), Expect = 0.0
 Identities = 386/386 (100%)
 Strand = Plus / Plus

                                                                       
Query: 589 cagaaaataataatgaaaatagtaataatagtttagaatttttaaaaatatttacaattc 648
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 cagaaaataataatgaaaatagtaataatagtttagaatttttaaaaatatttacaattc 648

                                                                       
Query: 649 aaccattggggtccattaccaattaaattagaaaaaccaattgacccatttttggcttca 708
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 aaccattggggtccattaccaattaaattagaaaaaccaattgacccatttttggcttca 708

                                                                       
Query: 709 aaagaagatagaagttttccaatcaaagcattaccaacatttttatttattatgaaaaca 768
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 aaagaagatagaagttttccaatcaaagcattaccaacatttttatttattatgaaaaca 768

                                                                       
Query: 769 tataaattatcttttaaaaaattggttgtaattttaaagcgaattttccaaatattaatc 828
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 tataaattatcttttaaaaaattggttgtaattttaaagcgaattttccaaatattaatc 828

                                                                       
Query: 829 aaagacaaattaaggatatgtttgatgagcattgtacttatagtcatagagtttggtcat 888
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 aaagacaaattaaggatatgtttgatgagcattgtacttatagtcatagagtttggtcat 888

                                                                       
Query: 889 tgaaaccacagagcgaattaatttttgctcgatcaacaattgacccattatatccagttc 948
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 889 tgaaaccacagagcgaattaatttttgctcgatcaacaattgacccattatatccagttc 948

                                     
Query: 949 ctaatattccaaaaccttcgccaacc 974
           ||||||||||||||||||||||||||
Sbjct: 949 ctaatattccaaaaccttcgccaacc 974


 Score =  389 bits (196), Expect = e-108
 Identities = 196/196 (100%)
 Strand = Plus / Plus

                                                                        
Query: 999  caaatgttcaatataggttccacagatccaaaactttctggatcaccaaacagatcaaaa 1058
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 999  caaatgttcaatataggttccacagatccaaaactttctggatcaccaaacagatcaaaa 1058

                                                                        
Query: 1059 tcaaaaaagaaaccaaattcagcaccagttcaaacaaattctttactgaattattttaca 1118
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1059 tcaaaaaagaaaccaaattcagcaccagttcaaacaaattctttactgaattattttaca 1118

                                                                        
Query: 1119 aaaattgaaccaccacaaccttcatcacaaccaccaactcaaactccaccactacaatct 1178
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1119 aaaattgaaccaccacaaccttcatcacaaccaccaactcaaactccaccactacaatct 1178

                            
Query: 1179 ccatcactaccattag 1194
            ||||||||||||||||
Sbjct: 1179 ccatcactaccattag 1194


 Score =  315 bits (159), Expect = 7e-86
 Identities = 165/165 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1253 gcaacaatcaccaaaacaagaaacttcaactccattaaagaaatcacgtaagagaactaa 1312
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1253 gcaacaatcaccaaaacaagaaacttcaactccattaaagaaatcacgtaagagaactaa 1312

                                                                        
Query: 1313 aactgatgtcgaatttggggaaacatttgtccatattgagccaattaagtttccnaaaca 1372
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1313 aactgatgtcgaatttggggaaacatttgtccatattgagccaattaagtttccnaaaca 1372

                                                         
Query: 1373 ttaacaaatttaacatatgtacnacaaagtattcgtaataaaaaa 1417
            |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1373 ttaacaaatttaacatatgtacnacaaagtattcgtaataaaaaa 1417


 Score =  228 bits (115), Expect = 1e-59
 Identities = 118/118 (100%)
 Strand = Plus / Plus

                                                                       
Query: 66  taaatttaaaatggatgaatcaattgatatggatagnggaagtgaggatactgaaataaa 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66  taaatttaaaatggatgaatcaattgatatggatagnggaagtgaggatactgaaataaa 125

                                                                     
Query: 126 agatacagaaatgaaagaagaaactccaaatgaattaccaaaaccaattcctacttct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 agatacagaaatgaaagaagaaactccaaatgaattaccaaaaccaattcctacttct 183


>Contig-U14255-1 (Contig-U14255-1Q) /CSM_Contig/Contig-U14255-1Q.Seq.d
          Length = 1845

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                          
Query: 591  gaaaataataatgaaaatagtaataatagt 620
            ||||||||||||||||||| ||||||||||
Sbjct: 1239 gaaaataataatgaaaataataataatagt 1268


 Score = 34.2 bits (17), Expect = 0.40
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                 
Query: 594  aataataatgaaaatagtaat 614
            ||||||||||| |||||||||
Sbjct: 1209 aataataatgacaatagtaat 1229


 Score = 30.2 bits (15), Expect = 6.2
 Identities = 21/23 (91%)
 Strand = Plus / Plus

                                   
Query: 594  aataataatgaaaatagtaataa 616
            |||| ||||||||||| ||||||
Sbjct: 1263 aatagtaatgaaaataataataa 1285


>Contig-U14528-1 (Contig-U14528-1Q) /CSM_Contig/Contig-U14528-1Q.Seq.d
          Length = 116

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 594 aataataatgaaaatagtaataatagt 620
           ||||||||| |||||||||||||||||
Sbjct: 3   aataataataaaaatagtaataatagt 29


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 22,011
Number of Sequences: 6905
Number of extensions: 22011
Number of successful extensions: 3264
Number of sequences better than 10.0: 557
length of query: 1417
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1401
effective length of database: 5,564,391
effective search space: 7795711791
effective search space used: 7795711791
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.23
Homology vs DNA 
Query= Contig-U11191-1 (Contig-U11191-1Q) /CSM_Contig/Contig-U11191-1Q.Seq.d
         (1417 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ348434) Dictyostelium discoideum cDNA clone:dda33p06, 3' ...   664   0.0    3
(BJ401651) Dictyostelium discoideum cDNA clone:dds23p20, 3' ...   327   0.0    4
(BJ354813) Dictyostelium discoideum cDNA clone:dda54h21, 3' ...   373   0.0    3
(BJ330916) Dictyostelium discoideum cDNA clone:dda33p06, 5' ...   200   1e-46  1
(BJ389368) Dictyostelium discoideum cDNA clone:dds18a15, 5' ...   194   6e-45  1
(BJ390854) Dictyostelium discoideum cDNA clone:dds23p20, 5' ...   192   3e-44  1
(AF482962) Dictyostelium discoideum ABC transporter AbcH.3 (...    52   0.008  2
(AC156888) Bos taurus clone CH240-65G19, WORKING DRAFT SEQUE...    40   0.015  4
(CU856128) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    54   0.015  1
(CE007102) tigr-gss-dog-17000320923757 Dog Library Canis lup...    54   0.015  1
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    34   0.016  15
(CU463255) Zebrafish DNA sequence from clone CH73-131K10 in ...    50   0.020  2
(AC116989) Dictyostelium discoideum chromosome 2 map 4545040...    42   0.055  5
(BX640495) Zebrafish DNA sequence from clone CH211-107H7 in ...    52   0.059  1
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    52   0.059  1
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    52   0.059  1
(AC006058) Homo sapiens 3p22-7 PAC RPCI4-555D20 (Roswell Par...    52   0.059  1
(AC073222) Homo sapiens chromosome 3 clone RP11-571B6, WORKI...    52   0.059  1
(CZ540816) SRAA-aad34c11.g1 Strongyloides ratti whole genome...    52   0.059  1
(BJ377830) Dictyostelium discoideum cDNA clone:ddc26i02, 3' ...    52   0.059  1
(EI974143) SB_BBc51-E21.F SB_BBc Sorghum bicolor genomic 5',...    42   0.082  2
(AM447509) Vitis vinifera contig VV78X189462.14, whole genom...    40   0.090  4
(AC116100) Dictyostelium discoideum chromosome 2 map 6163571...    38   0.10   5
(CR396583) Zebrafish DNA sequence from clone DKEY-157G20 in ...    50   0.14   5
(AC010439) Homo sapiens chromosome 5 clone CTD-2219P12, WORK...    42   0.15   3
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    38   0.15   17
(CU012054) Zebrafish DNA sequence from clone DKEYP-117D7 in ...    50   0.23   1
(CR933003) Zebrafish DNA sequence from clone DKEY-149P6 in l...    50   0.23   1
(BX294162) Zebrafish DNA sequence from clone CH211-270C5 in ...    50   0.23   1
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...    50   0.23   1
(DR729122) AGENCOURT_55162663 NIH_ZGC_7 Danio rerio cDNA clo...    50   0.23   1
(BX615813) Anopheles gambiae EST, clone AGADA60TR.                 50   0.23   1
(BM622714) 17000687476606 A.Gam.ad.cDNA1 Anopheles gambiae c...    50   0.23   1
(FG359109) RM_G_01785 Eriocheir sinensis hepatopancreas cDNA...    50   0.23   1
(AC122210) Mus musculus BAC clone RP23-96G7 from chromosome ...    40   0.41   5
(CU570725) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   0.50   2
(AC217644) Populus trichocarpa clone POP037-C20, complete se...    34   0.52   2
(AM483780) Vitis vinifera contig VV78X069115.9, whole genome...    36   0.56   2
(AM458596) Vitis vinifera contig VV78X075371.3, whole genome...    42   0.58   3
(AM474302) Vitis vinifera contig VV78X069115.8, whole genome...    36   0.61   2
(AG310886) Mus musculus molossinus DNA, clone:MSMg01-093H01....    34   0.63   3
(EK123989) 1092966811659 Global-Ocean-Sampling_GS-31-01-01-1...    38   0.64   3
(DR892208) JGI_XZT23221.rev NIH_XGC_tropTad5 Xenopus (Silura...    42   0.69   2
(DA131631) Homo sapiens cDNA clone BRALZ2003273, 5' end, mRN...    40   0.77   2
(AC116922) Dictyostelium discoideum chromosome 2 map 6061442...    38   0.80   4
(CX653341) EST 195 cDNA library from mitogen stimulated buff...    38   0.83   2
(BX005204) Zebrafish DNA sequence from clone CH211-151G17.         48   0.92   1
(AL592202) Zebrafish DNA sequence from clone XX-DZ105N24 Con...    48   0.92   1
(U60086) Dictyostelium discoideum multidrug resistance trans...    48   0.92   1
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...    48   0.92   1
(CU914720) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.92   1
(CU693407) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.92   1
(AL590707) Human DNA sequence *** SEQUENCING CANCELLED *** f...    48   0.92   1
(AC223176) Bos taurus clone CH240-427D20, WORKING DRAFT SEQU...    48   0.92   1
(AC184665) Strongylocentrotus purpuratus clone R3-3068G5, WO...    48   0.92   1
(AC178879) Strongylocentrotus purpuratus clone R3-27F24, WOR...    48   0.92   1
(AC172401) Strongylocentrotus purpuratus clone R3-14D24, WOR...    48   0.92   1
(BH533002) BOGZT72TR BOGZ Brassica oleracea genomic clone BO...    48   0.92   1
(EJ378345) 1092963751864 Global-Ocean-Sampling_GS-28-01-01-1...    48   0.92   1
(EJ048764) 1095454133462 Global-Ocean-Sampling_GS-26-01-01-1...    48   0.92   1
(DU057485) 97238 Tomato HindIII BAC Library Solanum lycopers...    48   0.92   1
(DE637052) Bombyx mori genomic DNA, Fosmid clone:GBMFno383_g...    48   0.92   1
(DE521696) Bombyx mori genomic DNA, Fosmid clone:GBMFno141_f...    48   0.92   1
(CT071982) Sus scrofa genomic clone PigE-249E11, genomic sur...    48   0.92   1
(CE477854) tigr-gss-dog-17000364650515 Dog Library Canis lup...    48   0.92   1
(DY893473) CeleSEQ12820 Cunninghamella elegans pBluescript (...    48   0.92   1
(DY890628) CeleSEQ9797 Cunninghamella elegans pBluescript (E...    48   0.92   1
(AI740292) MEEG04528.M1R Schistosoma mansoni, egg stage Schi...    48   0.92   1
(BJ407924) Dictyostelium discoideum cDNA clone:dds44h06, 3' ...    48   0.92   1
(AC005504) Plasmodium falciparum chromosome 12, *** SEQUENCI...    36   1.1    7
(CU075397) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   1.1    7
(CU914769) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   1.2    6
(AF356600) Dictyostelium discoideum filament-interacting pro...    34   1.2    5
(AC181538) Strongylocentrotus purpuratus clone R3-7D6, WORKI...    34   1.4    5
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214...    34   1.4    10
(AM439931) Vitis vinifera contig VV78X200661.7, whole genome...    40   1.5    3
(AC180864) Strongylocentrotus purpuratus clone R3-3026A24, W...    46   1.7    6
(BX908759) Zebrafish DNA sequence from clone DKEY-27J5 in li...    36   1.8    2
(AL445206) Human DNA sequence *** SEQUENCING CANCELLED *** f...    34   1.8    2
(AC185082) Bos taurus clone CH240-183E21, WORKING DRAFT SEQU...    34   1.8    2
(AP001456) Homo sapiens genomic DNA, chromosome 18q12 clone:...    34   1.8    2
(AC168569) Strongylocentrotus purpuratus clone R3-3065O2, WO...    42   1.8    2
(AC220643) Bos taurus clone CH240-351I17, WORKING DRAFT SEQU...    34   1.8    2
(AC183393) Xenopus tropicalis clone CH216-1A24, WORKING DRAF...    34   1.8    2
(AL109936) Human DNA sequence from clone RP5-1057J7 on chrom...    34   1.9    2
(CU927887) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    36   1.9    2
(AC209232) Homo sapiens FOSMID clone ABC9-46008800D8 from ch...    34   2.0    2
(AM488622) Vitis vinifera, whole genome shotgun sequence, co...    36   2.1    2
(CR631127) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    38   2.1    8
(CR457457) Zebrafish DNA sequence from clone CH211-150A20 in...    46   2.1    5
(EV558735) DR_4WG_FL06_G12 4-week-old gonad (TLL) Danio reri...    36   2.2    2
(AX356443) Sequence 77 from Patent WO0181622.                      46   2.3    2
(AX281178) Sequence 43 from Patent WO0177377.                      46   2.3    2
(AR453066) Sequence 43 from patent US 6677731.                     46   2.3    2
(DY590886) GUTF074975L17 POSSUM_01-POSSUM-GUT-2KB Trichosuru...    34   2.4    2
(DY588823) GUTF074980I1 POSSUM_01-POSSUM-GUT-2KB Trichosurus...    34   2.4    2
(DY598320) KIDNEYF031280A11 POSSUM_01-POSSUM-KIDNEY-2KB Tric...    34   2.5    2
(AC219211) Solanum lycopersicum chromosome 6 clone C06HBa011...    38   2.6    6
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    34   2.6    16
(AC182984) Bos taurus clone CH240-191F23, WORKING DRAFT SEQU...    38   2.7    6

>(BJ348434) Dictyostelium discoideum cDNA clone:dda33p06, 3' end,
           single read.
          Length = 669

 Score =  664 bits (335), Expect(3) = 0.0
 Identities = 335/335 (100%)
 Strand = Plus / Minus


Query: 640 ttacaattcaaccattggggtccattaccaattaaattagaaaaaccaattgacccattt 699
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 ttacaattcaaccattggggtccattaccaattaaattagaaaaaccaattgacccattt 610


Query: 700 ttggcttcaaaagaagatagaagttttccaatcaaagcattaccaacatttttatttatt 759
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 ttggcttcaaaagaagatagaagttttccaatcaaagcattaccaacatttttatttatt 550


Query: 760 atgaaaacatataaattatcttttaaaaaattggttgtaattttaaagcgaattttccaa 819
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 atgaaaacatataaattatcttttaaaaaattggttgtaattttaaagcgaattttccaa 490


Query: 820 atattaatcaaagacaaattaaggatatgtttgatgagcattgtacttatagtcatagag 879
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 atattaatcaaagacaaattaaggatatgtttgatgagcattgtacttatagtcatagag 430


Query: 880 tttggtcattgaaaccacagagcgaattaatttttgctcgatcaacaattgacccattat 939
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tttggtcattgaaaccacagagcgaattaatttttgctcgatcaacaattgacccattat 370


Query: 940 atccagttcctaatattccaaaaccttcgccaacc 974
           |||||||||||||||||||||||||||||||||||
Sbjct: 369 atccagttcctaatattccaaaaccttcgccaacc 335

 Score =  391 bits (197), Expect(3) = 0.0
 Identities = 197/197 (100%)
 Strand = Plus / Minus


Query: 999  caaatgttcaatataggttccacagatccaaaactttctggatcaccaaacagatcaaaa 1058
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310  caaatgttcaatataggttccacagatccaaaactttctggatcaccaaacagatcaaaa 251


Query: 1059 tcaaaaaagaaaccaaattcagcaccagttcaaacaaattctttactgaattattttaca 1118
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250  tcaaaaaagaaaccaaattcagcaccagttcaaacaaattctttactgaattattttaca 191


Query: 1119 aaaattgaaccaccacaaccttcatcacaaccaccaactcaaactccaccactacaatct 1178
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190  aaaattgaaccaccacaaccttcatcacaaccaccaactcaaactccaccactacaatct 131


Query: 1179 ccatcactaccattaga 1195
            |||||||||||||||||
Sbjct: 130  ccatcactaccattaga 114

 Score = 73.8 bits (37), Expect(3) = 0.0
 Identities = 37/37 (100%)
 Strand = Plus / Minus


Query: 1272 gaaacttcaactccattaaagaaatcacgtaagagaa 1308
            |||||||||||||||||||||||||||||||||||||
Sbjct: 37   gaaacttcaactccattaaagaaatcacgtaagagaa 1

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,202,420,085
Number of extensions: 83229163
Number of successful extensions: 7774245
Number of sequences better than 10.0: 287
Length of query: 1417
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1393
Effective length of database: 97,308,875,965
Effective search space: 135551264219245
Effective search space used: 135551264219245
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.29
Homology vs Protein 
Query= Contig-U11191-1 (Contig-U11191-1Q) /CSM_Contig/Contig-U11191-1Q.Seq.d
         (1417 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,122,942,882
Number of extensions: 18118603
Number of successful extensions: 46108
Number of sequences better than 10.0: 0
Number of HSP's gapped: 46065
Number of HSP's successfully gapped: 0
Length of query: 472
Length of database: 1,040,966,779
Length adjustment: 132
Effective length of query: 340
Effective length of database: 618,001,159
Effective search space: 210120394060
Effective search space used: 210120394060
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.41  gvh: 0.12  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.00
 nuc: 1.36  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 80.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: cytoplasmic

>> prediction for Contig-U11191-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 2
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 2
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0